Query 026438
Match_columns 238
No_of_seqs 187 out of 548
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.0 1.4E-10 4.8E-15 87.9 4.2 92 2-99 3-99 (101)
2 2ffw_A Midline-1; B-BOX, ring 93.8 0.031 1.1E-06 40.8 2.4 43 2-44 30-75 (78)
3 2dja_A Midline-2; tripartite m 93.3 0.035 1.2E-06 40.2 2.0 58 39-102 2-61 (84)
4 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.022 7.7E-07 42.3 -0.0 42 56-97 5-49 (101)
5 3ddt_A E3 ubiquitin-protein li 91.1 0.074 2.5E-06 34.7 1.3 41 53-99 5-46 (48)
6 2did_A Tripartite motif protei 90.4 0.097 3.3E-06 34.8 1.4 40 55-101 9-49 (53)
7 2yvr_A Transcription intermedi 90.2 0.092 3.2E-06 34.4 1.2 41 55-101 7-47 (50)
8 1fre_A Nuclear factor XNF7; zi 89.5 0.18 6.2E-06 31.8 2.1 29 56-85 5-34 (42)
9 2d8u_A Ubiquitin ligase TRIM63 88.2 0.15 5E-06 34.9 1.0 43 54-102 8-51 (64)
10 2yrg_A Tripartite motif-contai 87.8 0.19 6.4E-06 34.5 1.4 41 55-102 15-56 (59)
11 2csv_A Tripartite motif protei 83.9 0.34 1.2E-05 34.1 1.1 42 54-102 18-59 (72)
12 2ffw_A Midline-1; B-BOX, ring 80.3 0.33 1.1E-05 35.2 -0.1 43 54-96 30-75 (78)
13 2egm_A Tripartite motif-contai 80.3 0.23 8E-06 33.8 -0.8 31 54-85 18-49 (57)
14 2did_A Tripartite motif protei 73.3 2.1 7.2E-05 28.1 2.4 41 3-50 9-50 (53)
15 4hc9_A Trans-acting T-cell-spe 67.3 1.9 6.6E-05 33.7 1.3 80 2-82 5-88 (115)
16 2yrg_A Tripartite motif-contai 65.3 4 0.00014 27.6 2.5 40 4-50 16-56 (59)
17 2yvr_A Transcription intermedi 64.6 4.2 0.00014 26.2 2.4 40 4-49 8-47 (50)
18 2d8v_A Zinc finger FYVE domain 62.0 2.5 8.6E-05 30.5 1.0 45 53-99 7-52 (67)
19 3pfq_A PKC-B, PKC-beta, protei 57.6 5.6 0.00019 38.6 2.9 75 4-89 50-145 (674)
20 2d8v_A Zinc finger FYVE domain 55.6 7.1 0.00024 28.1 2.4 45 3-49 9-54 (67)
21 3ddt_A E3 ubiquitin-protein li 55.5 6.1 0.00021 25.3 2.0 31 11-47 15-46 (48)
22 1fre_A Nuclear factor XNF7; zi 55.4 4.2 0.00014 25.2 1.1 30 4-34 5-35 (42)
23 2dja_A Midline-2; tripartite m 55.3 7 0.00024 27.7 2.4 41 4-50 20-61 (84)
24 2d8u_A Ubiquitin ligase TRIM63 53.3 5.4 0.00019 26.8 1.5 41 4-50 10-51 (64)
25 2fc7_A ZZZ3 protein; structure 51.6 24 0.00081 25.8 4.9 44 56-99 23-73 (82)
26 2jne_A Hypothetical protein YF 50.5 12 0.0004 28.9 3.1 26 1-30 31-56 (101)
27 2xzl_A ATP-dependent helicase 46.9 6.6 0.00023 39.5 1.5 81 3-83 12-107 (802)
28 1z60_A TFIIH basal transcripti 46.9 5.5 0.00019 27.8 0.7 32 4-35 17-51 (59)
29 2egm_A Tripartite motif-contai 46.7 8.2 0.00028 25.9 1.5 30 4-34 20-50 (57)
30 2csv_A Tripartite motif protei 40.5 11 0.00038 26.1 1.4 39 4-49 20-58 (72)
31 2jrp_A Putative cytoplasmic pr 40.1 50 0.0017 24.4 5.1 61 1-85 1-62 (81)
32 2wjy_A Regulator of nonsense t 37.2 11 0.00039 37.8 1.5 79 3-81 7-100 (800)
33 2pv0_B DNA (cytosine-5)-methyl 36.2 15 0.0005 34.5 1.9 71 1-81 49-122 (386)
34 1v5n_A PDI-like hypothetical p 33.5 29 0.001 25.5 2.9 42 41-88 34-75 (89)
35 1tot_A CREB-binding protein; z 32.4 13 0.00046 24.8 0.8 30 2-31 6-37 (52)
36 2lri_C Autoimmune regulator; Z 31.2 19 0.00066 25.1 1.5 24 3-34 13-36 (66)
37 1v6g_A Actin binding LIM prote 27.3 22 0.00077 24.5 1.3 20 14-33 3-26 (81)
38 2epr_A POZ-, at HOOK-, and zin 26.8 15 0.00051 22.2 0.2 37 21-61 11-47 (48)
39 1f62_A Transcription factor WS 26.1 38 0.0013 21.7 2.2 26 4-34 2-27 (51)
40 1qxf_A GR2, 30S ribosomal prot 25.3 19 0.00064 25.8 0.5 30 1-31 6-35 (66)
41 1mm2_A MI2-beta; PHD, zinc fin 25.3 57 0.0019 22.0 3.0 25 3-35 10-34 (61)
42 2fc7_A ZZZ3 protein; structure 24.7 71 0.0024 23.1 3.6 32 2-33 21-59 (82)
43 3u5c_b RP61, YS20, 40S ribosom 24.4 24 0.00081 26.3 0.9 29 1-30 33-61 (82)
44 2e8o_A SAM domain and HD domai 24.2 38 0.0013 25.2 2.1 11 140-150 25-35 (103)
45 2xzm_6 RPS27E; ribosome, trans 23.5 21 0.00073 26.5 0.5 29 1-30 31-59 (81)
46 3j20_W 30S ribosomal protein S 23.2 21 0.00072 25.3 0.4 30 1-31 14-43 (63)
47 2yqq_A Zinc finger HIT domain- 22.9 34 0.0012 23.5 1.5 29 4-34 14-43 (56)
48 3iz6_X 40S ribosomal protein S 22.6 23 0.00078 26.6 0.5 29 1-30 35-63 (86)
49 3a1b_A DNA (cytosine-5)-methyl 21.4 51 0.0017 27.2 2.5 70 2-81 36-108 (159)
50 2e5r_A Dystrobrevin alpha; ZZ 20.8 77 0.0026 21.8 3.0 30 3-32 12-45 (63)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=87.93 Aligned_cols=92 Identities=23% Similarity=0.446 Sum_probs=76.4
Q ss_pred CccccccCC---CCcEEEcccccccchhhhchhcccCcccccccccc-eeccccCCCCCccccccCceEEEecccccccc
Q 026438 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPCDICQEKAAFIFCVEDRALFC 77 (238)
Q Consensus 2 ~~~Cd~C~~---apA~vyC~aD~A~LC~~CD~~vHsaN~La~kH~Rv-pL~~~~~~~p~Cd~C~~~pA~v~C~~D~a~LC 77 (238)
.+.|++|.+ .+|+.+|..+.+.||..|...+|..++.+++|.++ ++...+.+...|+.|+..+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 468999984 68999999999999999999999988878899987 55544445678999998889999999999999
Q ss_pred ccCCC-CCcCCCCCCCCCcceee
Q 026438 78 KDCDE-PIHSPGSLSANHQRFLA 99 (238)
Q Consensus 78 ~~CD~-~iH~an~ls~~HqR~~l 99 (238)
..|.. ..| +.|...++
T Consensus 83 ~~C~~~~~H------~~H~~~~l 99 (101)
T 2jun_A 83 ALCKLVGRH------RDHQVAAL 99 (101)
T ss_dssp HHHHHHTTT------SSSCBCCC
T ss_pred hhcCCCCCc------CCCCeecC
Confidence 99985 566 34665554
No 2
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=93.76 E-value=0.031 Score=40.78 Aligned_cols=43 Identities=26% Similarity=0.583 Sum_probs=36.3
Q ss_pred CccccccCC---CCcEEEcccccccchhhhchhcccCccccccccc
Q 026438 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQR 44 (238)
Q Consensus 2 ~~~Cd~C~~---apA~vyC~aD~A~LC~~CD~~vHsaN~La~kH~R 44 (238)
.+.|++|.. .+|+..|..+.+.||..|=...|...+.+++|.=
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 368999986 6799999999999999998767987777778863
No 3
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=93.34 E-value=0.035 Score=40.19 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=41.3
Q ss_pred ccccccceeccc-cCCCCCccccccCceEEEeccccccccccCCC-CCcCCCCCCCCCcceeeccc
Q 026438 39 ASKHQRLLLQCL-SNKLPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (238)
Q Consensus 39 a~kH~RvpL~~~-~~~~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH~an~ls~~HqR~~l~~~ 102 (238)
+.+|+.+.-... ......|+.|+..+..+||..|...+|..|.. .-| ..|..+++..+
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 61 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 61 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHH
Confidence 356776654331 22355799998788899999999999999976 555 45766666544
No 4
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.50 E-value=0.022 Score=42.29 Aligned_cols=42 Identities=21% Similarity=0.552 Sum_probs=35.4
Q ss_pred Ccccccc---CceEEEeccccccccccCCCCCcCCCCCCCCCcce
Q 026438 56 PCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRF 97 (238)
Q Consensus 56 ~Cd~C~~---~pA~v~C~~D~a~LC~~CD~~iH~an~ls~~HqR~ 97 (238)
.|++|.+ .+|..+|..+...||..|...+|..+....+|+++
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 5999984 57999999999999999998888877666778765
No 5
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=91.14 E-value=0.074 Score=34.74 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCCccccccCceEEEeccccccccccCC-CCCcCCCCCCCCCcceee
Q 026438 53 KLPPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLA 99 (238)
Q Consensus 53 ~~p~Cd~C~~~pA~v~C~~D~a~LC~~CD-~~iH~an~ls~~HqR~~l 99 (238)
+...|..|+.++..+||..|...+|..|. ..-| +.|..+++
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l 46 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPL 46 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEEC
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeC
Confidence 34569999978889999999999999996 4455 45666555
No 6
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=90.36 E-value=0.097 Score=34.81 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=31.9
Q ss_pred CCccccccCceEEEeccccccccccCCC-CCcCCCCCCCCCcceeecc
Q 026438 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG 101 (238)
Q Consensus 55 p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH~an~ls~~HqR~~l~~ 101 (238)
..|+.|+ ++..+||..|...+|..|.. .-| +.|...++..
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e 49 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSG 49 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHH
Confidence 3599998 67899999999999999986 455 4677776654
No 7
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=90.24 E-value=0.092 Score=34.43 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=32.8
Q ss_pred CCccccccCceEEEeccccccccccCCCCCcCCCCCCCCCcceeecc
Q 026438 55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG 101 (238)
Q Consensus 55 p~Cd~C~~~pA~v~C~~D~a~LC~~CD~~iH~an~ls~~HqR~~l~~ 101 (238)
..|+.|..++..+||..|...+|..|...-| ..|...++..
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e 47 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED 47 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence 3599998888899999999999999976555 4677766654
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=89.52 E-value=0.18 Score=31.76 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=24.0
Q ss_pred CccccccCceEEEeccccccccccCCC-CCc
Q 026438 56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (238)
Q Consensus 56 ~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH 85 (238)
.|..|+ ++..+||..|...+|..|.. .-|
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 599997 66788999999999999986 445
No 9
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=88.18 E-value=0.15 Score=34.92 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=33.1
Q ss_pred CCCccccccCceEEEeccccccccccCCC-CCcCCCCCCCCCcceeeccc
Q 026438 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (238)
Q Consensus 54 ~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH~an~ls~~HqR~~l~~~ 102 (238)
...|+.|..++..+||..|...+|..|.. ..| ..|..+++..+
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~a 51 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSV 51 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTC
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHHH
Confidence 34699998788899999999999999974 456 35776666543
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.83 E-value=0.19 Score=34.49 Aligned_cols=41 Identities=27% Similarity=0.611 Sum_probs=32.0
Q ss_pred CCccccccCceEEEeccccccccccCCC-CCcCCCCCCCCCcceeeccc
Q 026438 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (238)
Q Consensus 55 p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH~an~ls~~HqR~~l~~~ 102 (238)
..|..|+ ++..+||..|...+|..|.. .-| ..|..+++...
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 4599997 56889999999999999986 455 46777776544
No 11
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=83.91 E-value=0.34 Score=34.07 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCccccccCceEEEeccccccccccCCCCCcCCCCCCCCCcceeeccc
Q 026438 54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGI 102 (238)
Q Consensus 54 ~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~~iH~an~ls~~HqR~~l~~~ 102 (238)
...|+.|+ ++..+||..|...+|..|...-| ..|..+++...
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea 59 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEA 59 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHH
Confidence 45799995 77899999999999999976555 46877777653
No 12
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=80.29 E-value=0.33 Score=35.20 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=34.3
Q ss_pred CCCcccccc---CceEEEeccccccccccCCCCCcCCCCCCCCCcc
Q 026438 54 LPPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96 (238)
Q Consensus 54 ~p~Cd~C~~---~pA~v~C~~D~a~LC~~CD~~iH~an~ls~~HqR 96 (238)
...|++|.. .+|...|..+.+.||..|-...|.......+|+.
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 456999976 5689999999999999998777776655566754
No 13
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.25 E-value=0.23 Score=33.81 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=25.4
Q ss_pred CCCccccccCceEEEeccccccccccCCC-CCc
Q 026438 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (238)
Q Consensus 54 ~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH 85 (238)
...|..|+ ++..+||..|...+|..|.. .-|
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 44699996 66899999999999999975 344
No 14
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=73.31 E-value=2.1 Score=28.08 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=30.0
Q ss_pred ccccccCCCCcEEEcccccccchhhhch-hcccCcccccccccceeccc
Q 026438 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (238)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~kH~RvpL~~~ 50 (238)
..|..=+ .+-.+||..|...+|..|-. .-| +.|..++|.++
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 3455554 56789999999999999985 455 46777777543
No 15
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=67.26 E-value=1.9 Score=33.73 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=48.8
Q ss_pred CccccccCCCCcEEEccccc-ccchhhhc--hhcccCcccccccccceeccccCCCCCccccccCceEEEec-ccccccc
Q 026438 2 KIQCDVCEKAPATVICCADE-AALCAKCD--VEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV-EDRALFC 77 (238)
Q Consensus 2 ~~~Cd~C~~apA~vyC~aD~-A~LC~~CD--~~vHsaN~La~kH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~-~D~a~LC 77 (238)
...|..|+.....+|-..+. ..||..|. .+.|..|....+-.+... ........|..|+......|-. .+...||
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~-~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLS-AARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCC-CCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccccccccccccccc-ccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 46799999877777766554 47999999 455666654333222211 1112345699998887555432 2235788
Q ss_pred ccCCC
Q 026438 78 KDCDE 82 (238)
Q Consensus 78 ~~CD~ 82 (238)
..|-.
T Consensus 84 NaCgl 88 (115)
T 4hc9_A 84 NACGL 88 (115)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88863
No 16
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.34 E-value=4 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=28.9
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hcccCcccccccccceeccc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~kH~RvpL~~~ 50 (238)
.|..-+ .+-.+||..|...+|..|.. .-| +.|..++|.++
T Consensus 16 ~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 16 HCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp BCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred cChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 455444 46789999999999999986 455 35666777543
No 17
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=64.55 E-value=4.2 Score=26.19 Aligned_cols=40 Identities=25% Similarity=0.628 Sum_probs=29.3
Q ss_pred cccccCCCCcEEEcccccccchhhhchhcccCcccccccccceecc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC 49 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~kH~RvpL~~ 49 (238)
.|..=...+-.+||..|...+|..|-..-| +.|..++|..
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e 47 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED 47 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred cCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence 455553456789999999999999976555 3677677643
No 18
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.99 E-value=2.5 Score=30.50 Aligned_cols=45 Identities=31% Similarity=0.452 Sum_probs=35.7
Q ss_pred CCCCccccccCceEEEeccc-cccccccCCCCCcCCCCCCCCCcceee
Q 026438 53 KLPPCDICQEKAAFIFCVED-RALFCKDCDEPIHSPGSLSANHQRFLA 99 (238)
Q Consensus 53 ~~p~Cd~C~~~pA~v~C~~D-~a~LC~~CD~~iH~an~ls~~HqR~~l 99 (238)
.++-|-+|.+. |.+.|..+ .-++|..|-...|.. .--+.|+-++.
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y 52 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPY 52 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECC
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeec
Confidence 37889999998 89999877 779999999999953 33456766655
No 19
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=57.61 E-value=5.6 Score=38.63 Aligned_cols=75 Identities=19% Similarity=0.425 Sum_probs=22.8
Q ss_pred cccccCCCCcEEEcccccccchhhhchhcccCcccccccccceecc---------------c-----c-CCCCCcccccc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC---------------L-----S-NKLPPCDICQE 62 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~kH~RvpL~~---------------~-----~-~~~p~Cd~C~~ 62 (238)
.|+.|+.--.. ..-..+-|..|...+|.. .|..++... . . .....|+.|+.
T Consensus 50 ~C~~C~~~i~g---~~~qg~~C~~C~~~~H~~-----C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~ 121 (674)
T 3pfq_A 50 FCSHCTDFIWG---FGKQGFQCQVCSFVVHKR-----CHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGS 121 (674)
T ss_dssp ------------------------------------------------------------CCCCCEECCSSCCCCSSSCS
T ss_pred ccccccccccc---cCCceeECCCCCCCcChh-----hcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCcccc
Confidence 47788763222 234556677777777752 222222211 0 0 12457999987
Q ss_pred CceEEEeccccccccccCCCCCcCCCC
Q 026438 63 KAAFIFCVEDRALFCKDCDEPIHSPGS 89 (238)
Q Consensus 63 ~pA~v~C~~D~a~LC~~CD~~iH~an~ 89 (238)
.- +...-..+-|..|...+|..|.
T Consensus 122 ~l---~g~~~qg~~C~~C~~~~H~~C~ 145 (674)
T 3pfq_A 122 LL---YGLIHQGMKCDTCMMNVHKRCV 145 (674)
T ss_dssp CC---BBSSSCEECCSSSCCCBCSSTT
T ss_pred cc---chhhcCccccccCCcchhhhhh
Confidence 73 3333456778888887777664
No 20
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=55.55 E-value=7.1 Score=28.13 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=36.3
Q ss_pred ccccccCCCCcEEEcccc-cccchhhhchhcccCcccccccccceecc
Q 026438 3 IQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQC 49 (238)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD-~A~LC~~CD~~vHsaN~La~kH~RvpL~~ 49 (238)
+-|-+|... |++.|..+ .-.+|.+|=+..|. ..-.+.|+-+++..
T Consensus 9 pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 9 PWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHP 54 (67)
T ss_dssp SSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCC
T ss_pred CeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccC
Confidence 458899964 99999987 56779999999996 34578999998843
No 21
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=55.55 E-value=6.1 Score=25.26 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=22.8
Q ss_pred CCcEEEcccccccchhhhc-hhcccCccccccccccee
Q 026438 11 APATVICCADEAALCAKCD-VEVHAANKLASKHQRLLL 47 (238)
Q Consensus 11 apA~vyC~aD~A~LC~~CD-~~vHsaN~La~kH~RvpL 47 (238)
.+-.+||..|...+|..|- ..-|. .|.-++|
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 46 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL 46 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred ccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence 4477999999999999996 34564 3555554
No 22
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=55.39 E-value=4.2 Score=25.18 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=22.6
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hccc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHA 34 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHs 34 (238)
.|..=+ .+-.+||..|...+|..|-. .-|.
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 455444 56788999999999999975 4453
No 23
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=55.34 E-value=7 Score=27.68 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=29.2
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hcccCcccccccccceeccc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~kH~RvpL~~~ 50 (238)
.|..=+..+-.+||..|...+|..|-. .-| +.|.-++|..+
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 61 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 61 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHH
Confidence 354443456789999999999999986 555 35666676543
No 24
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=53.29 E-value=5.4 Score=26.79 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=29.6
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hcccCcccccccccceeccc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~kH~RvpL~~~ 50 (238)
.|..=...+-.+||..|...+|..|-. .-|. .|.-++|..+
T Consensus 10 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a 51 (64)
T 2d8u_A 10 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSV 51 (64)
T ss_dssp CCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTC
T ss_pred cCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHH
Confidence 455543456789999999999999975 3664 5777777544
No 25
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=51.58 E-value=24 Score=25.75 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=27.8
Q ss_pred CccccccCceE---EEeccccc----cccccCCCCCcCCCCCCCCCcceee
Q 026438 56 PCDICQEKAAF---IFCVEDRA----LFCKDCDEPIHSPGSLSANHQRFLA 99 (238)
Q Consensus 56 ~Cd~C~~~pA~---v~C~~D~a----~LC~~CD~~iH~an~ls~~HqR~~l 99 (238)
.|+.|+..+.. +.|..+.. -||..|-......+.-...|....+
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i 73 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI 73 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEe
Confidence 49999987643 66887765 5999998654332222234554444
No 26
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.53 E-value=12 Score=28.95 Aligned_cols=26 Identities=23% Similarity=0.639 Sum_probs=12.9
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 026438 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~ 30 (238)
|...|-.|+..-. + .+..+.|..|+.
T Consensus 31 M~~~CP~Cq~eL~-~---~g~~~hC~~C~~ 56 (101)
T 2jne_A 31 MELHCPQCQHVLD-Q---DNGHARCRSCGE 56 (101)
T ss_dssp CCCBCSSSCSBEE-E---ETTEEEETTTCC
T ss_pred ccccCccCCCcce-e---cCCEEECccccc
Confidence 5566666664311 1 233334666653
No 27
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=46.92 E-value=6.6 Score=39.48 Aligned_cols=81 Identities=22% Similarity=0.473 Sum_probs=54.4
Q ss_pred ccccccCCC--CcEEEcccccccchhhhc-hh-cccCccc-ccccccceecccc---CCCCCccccccCceEEEec----
Q 026438 3 IQCDVCEKA--PATVICCADEAALCAKCD-VE-VHAANKL-ASKHQRLLLQCLS---NKLPPCDICQEKAAFIFCV---- 70 (238)
Q Consensus 3 ~~Cd~C~~a--pA~vyC~aD~A~LC~~CD-~~-vHsaN~L-a~kH~RvpL~~~~---~~~p~Cd~C~~~pA~v~C~---- 70 (238)
..|.+|+-. .+++.|..+.-.+|..=. .. -|--|.| .+||.=|-|-+-+ -...-|-.|+....++...
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~~ 91 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAK 91 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC--
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeecc
Confidence 569999985 588889999999999544 22 3444444 4588888885332 3355699999998665432
Q ss_pred cc--ccccccc-CCCC
Q 026438 71 ED--RALFCKD-CDEP 83 (238)
Q Consensus 71 ~D--~a~LC~~-CD~~ 83 (238)
.+ ...||+. |...
T Consensus 92 ~~~~~~~~cr~~c~~~ 107 (802)
T 2xzl_A 92 SEAVVVLLCRIPCAQT 107 (802)
T ss_dssp ----CEEEETTTTTTC
T ss_pred CCceEEEEeCCcccch
Confidence 22 4578885 8543
No 28
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.87 E-value=5.5 Score=27.83 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=24.8
Q ss_pred cccccCCCC---cEEEcccccccchhhhchhcccC
Q 026438 4 QCDVCEKAP---ATVICCADEAALCAKCDVEVHAA 35 (238)
Q Consensus 4 ~Cd~C~~ap---A~vyC~aD~A~LC~~CD~~vHsa 35 (238)
.|-.|...- .++.|..+...+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 377777643 23459999999999999999963
No 29
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.71 E-value=8.2 Score=25.87 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=23.1
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hccc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHA 34 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHs 34 (238)
.|..=+ .+-.+||..|...+|..|.. .-|.
T Consensus 20 ~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 455553 57889999999999999985 4554
No 30
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=40.46 E-value=11 Score=26.06 Aligned_cols=39 Identities=21% Similarity=0.550 Sum_probs=28.4
Q ss_pred cccccCCCCcEEEcccccccchhhhchhcccCcccccccccceecc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC 49 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~kH~RvpL~~ 49 (238)
.|..=+ .+-.+||..|...+|..|-..-|. .|.-++|.+
T Consensus 20 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~e 58 (72)
T 2csv_A 20 KCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEE 58 (72)
T ss_dssp BCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHH
T ss_pred cCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHH
Confidence 455443 577899999999999999765553 566666643
No 31
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.08 E-value=50 Score=24.35 Aligned_cols=61 Identities=25% Similarity=0.567 Sum_probs=34.6
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchhcccCcccccccccceeccccCCCCCccccccCceEEE-ecccccccccc
Q 026438 1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIF-CVEDRALFCKD 79 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~kH~RvpL~~~~~~~p~Cd~C~~~pA~v~-C~~D~a~LC~~ 79 (238)
|...|-.|+..... ...-+.|..|+..+-. .. .|+.|+.....+- |.+ ..+||..
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~~----------~a---------fCPeCgq~Le~lkACGA-~~yFC~~ 56 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFSL----------QA---------LCPDCRQPLQVLKACGA-VDYFCQN 56 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEEE----------EE---------ECSSSCSCCCEEEETTE-EEECCTT
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCCC----------cc---------cCcchhhHHHHHHhcCC-cCeeecc
Confidence 78889999865432 2334457777643211 11 2777776654421 222 2688988
Q ss_pred CCCCCc
Q 026438 80 CDEPIH 85 (238)
Q Consensus 80 CD~~iH 85 (238)
|..-|.
T Consensus 57 C~~LiS 62 (81)
T 2jrp_A 57 GHGLIS 62 (81)
T ss_dssp TTCCCC
T ss_pred CCCEee
Confidence 876553
No 32
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=37.16 E-value=11 Score=37.77 Aligned_cols=79 Identities=22% Similarity=0.473 Sum_probs=52.6
Q ss_pred ccccccCCC--CcEEEcccccccchhhhchh--cccCccc-ccccccceecccc---CCCCCccccccCceEEE----ec
Q 026438 3 IQCDVCEKA--PATVICCADEAALCAKCDVE--VHAANKL-ASKHQRLLLQCLS---NKLPPCDICQEKAAFIF----CV 70 (238)
Q Consensus 3 ~~Cd~C~~a--pA~vyC~aD~A~LC~~CD~~--vHsaN~L-a~kH~RvpL~~~~---~~~p~Cd~C~~~pA~v~----C~ 70 (238)
..|.+|+-. ..++.|..+.-.+|..-... -|--|.| .+||.=|-|.+-+ -...-|-.|+....++. ..
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~~ 86 (800)
T 2wjy_A 7 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK 86 (800)
T ss_dssp TSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC--
T ss_pred hhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceecc
Confidence 569999985 58888999999999854422 3444444 4588888885432 24566999999986543 33
Q ss_pred cc--cccccc-cCC
Q 026438 71 ED--RALFCK-DCD 81 (238)
Q Consensus 71 ~D--~a~LC~-~CD 81 (238)
.+ ...||+ -|.
T Consensus 87 ~~~~~~~~~~~~~~ 100 (800)
T 2wjy_A 87 ADSVVVLLCRQPCA 100 (800)
T ss_dssp ---CCEECCTTTTS
T ss_pred cCceEEEEecCccc
Confidence 33 357888 474
No 33
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.15 E-value=15 Score=34.47 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=45.0
Q ss_pred CCccccccCCCCcEEEcccc-cccchhhhchhcccCcccccccccceeccccCCCCCccccccCceEEEec--ccccccc
Q 026438 1 MKIQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFC 77 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD-~A~LC~~CD~~vHsaN~La~kH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~--~D~a~LC 77 (238)
|+..|-.|++.. .++.+-- ...+|..|-...+..+..- .-...-..|..|.+-.-.+.|. .+...||
T Consensus 49 ~e~~C~~CG~~~-~~~~HPl~~v~lC~~Ck~~y~~~~f~~---------D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC 118 (386)
T 2pv0_B 49 IEDICICCGSLQ-VHTQHPLFEGGICAPCKDKFLDALFLY---------DDDGYQSYCSICCSGETLLICGNPDCTRCYC 118 (386)
T ss_dssp GGGSBTTTCCSC-CCSBCSSBSSBCCHHHHHHHHTTTTCB---------CSSSSBCSCTTTCCCSSCEECCSTTCCCEEC
T ss_pred ccceeCCCCCcC-ccccCCCcCcchhhHHHHHHhccCccc---------CCCCCcccceEcCCCCeEEEeCCCCCCcchH
Confidence 345788888753 2333322 5778888887777654311 1111233588888888777788 6777788
Q ss_pred ccCC
Q 026438 78 KDCD 81 (238)
Q Consensus 78 ~~CD 81 (238)
..|-
T Consensus 119 ~~Ci 122 (386)
T 2pv0_B 119 FECV 122 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8885
No 34
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=33.49 E-value=29 Score=25.46 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=27.0
Q ss_pred ccccceeccccCCCCCccccccCceEEEeccccccccccCCCCCcCCC
Q 026438 41 KHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPG 88 (238)
Q Consensus 41 kH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~~iH~an 88 (238)
.|.+.+|.-.....-.|+.|.... ....+.|..|+..+|..+
T Consensus 34 ~Hp~H~L~L~~~~~~~C~~C~~~~------~~~~Y~C~~C~f~lH~~C 75 (89)
T 1v5n_A 34 LHEEHELELTRVQVYTCDKCEEEG------TIWSYHCDECDFDLHAKC 75 (89)
T ss_dssp TTTTSCEEEECCSSCCCTTTSCCC------CSCEEECTTTCCCCCHHH
T ss_pred CCCCCccEEeeCCCeEeCCCCCcC------CCcEEEcCCCCCeEcHHh
Confidence 343444543333334699999874 346788999998888654
No 35
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=32.42 E-value=13 Score=24.84 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=22.7
Q ss_pred CccccccCCCC-cEEEccccccc-chhhhchh
Q 026438 2 KIQCDVCEKAP-ATVICCADEAA-LCAKCDVE 31 (238)
Q Consensus 2 ~~~Cd~C~~ap-A~vyC~aD~A~-LC~~CD~~ 31 (238)
.+.|+.|.+.. ..+.|..+..+ ||..|-..
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 46799999752 45779888776 99999654
No 36
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=31.23 E-value=19 Score=25.11 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=17.1
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhccc
Q 026438 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (238)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHs 34 (238)
..|.+|++. +...+|..|+...|.
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~ 36 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHW 36 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECH
T ss_pred CCcCCCCCC--------CeEEECCCCCCceec
Confidence 358888853 345678889888885
No 37
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.29 E-value=22 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=14.6
Q ss_pred EEEccccc----ccchhhhchhcc
Q 026438 14 TVICCADE----AALCAKCDVEVH 33 (238)
Q Consensus 14 ~vyC~aD~----A~LC~~CD~~vH 33 (238)
.+||..|= +..|..|+..|-
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~ 26 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE 26 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC
T ss_pred CCcchHHHHhHhCCcCccccCEec
Confidence 46777773 457999998776
No 38
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.85 E-value=15 Score=22.19 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=22.4
Q ss_pred cccchhhhchhcccCcccccccccceeccccCCCCCccccc
Q 026438 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (238)
Q Consensus 21 ~A~LC~~CD~~vHsaN~La~kH~RvpL~~~~~~~p~Cd~C~ 61 (238)
..+-|..|+...-... .+.+|+|+-..+. .-.|++|+
T Consensus 11 k~~~C~~C~k~f~~~~-~L~~H~~~H~~~k---~~~C~~C~ 47 (48)
T 2epr_A 11 KQVACEICGKIFRDVY-HLNRHKLSHSGEK---PYSSGPSS 47 (48)
T ss_dssp CSEEETTTTEEESSHH-HHHHHGGGSCSCC---CCCSCCCC
T ss_pred cCeeCCCCCcccCCHH-HHHHHHHhcCCCC---CccCCCCC
Confidence 3466888886655433 4678888764322 23477775
No 39
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.11 E-value=38 Score=21.73 Aligned_cols=26 Identities=35% Similarity=0.819 Sum_probs=17.9
Q ss_pred cccccCCCCcEEEcccccccchhhhchhccc
Q 026438 4 QCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHs 34 (238)
.|.+|++.. ..+.-.+|..|+...|.
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~ 27 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHL 27 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECH
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCc
Confidence 588888643 13456678899988775
No 40
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=25.31 E-value=19 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchh
Q 026438 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~~ 31 (238)
|++.|..|. +.-++|=.+-...+|..|...
T Consensus 6 m~VKCp~C~-niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCE-HEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEEECTTTC-CEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCC-CceEEEecCceEEEcccCCCE
Confidence 678899999 578888888888899999743
No 41
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.31 E-value=57 Score=22.02 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=17.8
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhcccC
Q 026438 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAA 35 (238)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsa 35 (238)
..|.+|+.. +.-.+|..|+...|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH 34 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc
Confidence 457788752 4567788899888863
No 42
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=24.75 E-value=71 Score=23.13 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=23.7
Q ss_pred CccccccCCCC---cEEEcccccc----cchhhhchhcc
Q 026438 2 KIQCDVCEKAP---ATVICCADEA----ALCAKCDVEVH 33 (238)
Q Consensus 2 ~~~Cd~C~~ap---A~vyC~aD~A----~LC~~CD~~vH 33 (238)
.+.||.|+..+ -.+.|..+.. -||..|-..-+
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 46899999765 4467887765 59999976543
No 43
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.44 E-value=24 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.638 Sum_probs=23.8
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 026438 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~ 30 (238)
|++.|-.|+ +.-+||=.+-...+|..|..
T Consensus 33 m~VkCp~C~-~~q~VFSha~t~V~C~~Cg~ 61 (82)
T 3u5c_b 33 LDVKCPGCL-NITTVFSHAQTAVTCESCST 61 (82)
T ss_dssp EEEECTTSC-SCEEEESBCSSCCCCSSSCC
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccccCC
Confidence 678899998 57788888888888888873
No 44
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.17 E-value=38 Score=25.20 Aligned_cols=11 Identities=9% Similarity=0.290 Sum_probs=7.9
Q ss_pred CCCCCcccccc
Q 026438 140 GISSPWAVDDF 150 (238)
Q Consensus 140 ~~~~~~~vd~l 150 (238)
.....|.++|+
T Consensus 25 ~~v~~Ws~~~V 35 (103)
T 2e8o_A 25 PDYKTWGPEQV 35 (103)
T ss_dssp SCGGGCHHHHH
T ss_pred cChhhCCHHHH
Confidence 35566998887
No 45
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=23.54 E-value=21 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.735 Sum_probs=23.8
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 026438 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~ 30 (238)
|++.|..|+ +.-+||=.+-...+|..|..
T Consensus 31 m~VkCp~C~-n~q~VFShA~t~V~C~~Cg~ 59 (81)
T 2xzm_6 31 MDVKCAQCQ-NIQMIFSNAQSTIICEKCSA 59 (81)
T ss_dssp EEEECSSSC-CEEEEETTCSSCEECSSSCC
T ss_pred EEeECCCCC-CeeEEEecCccEEEccCCCC
Confidence 678899998 57788888888888888873
No 46
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.24 E-value=21 Score=25.34 Aligned_cols=30 Identities=17% Similarity=0.494 Sum_probs=24.1
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchh
Q 026438 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~~ 31 (238)
|++.|-.|+ +.-++|=++-...+|..|..-
T Consensus 14 m~VkCp~C~-~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCG-NEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEEECSSSC-CEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccCcCCE
Confidence 678899998 467788888888888888743
No 47
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.88 E-value=34 Score=23.52 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=24.1
Q ss_pred cccccCCCCcEEEcccccccchh-hhchhccc
Q 026438 4 QCDVCEKAPATVICCADEAALCA-KCDVEVHA 34 (238)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~-~CD~~vHs 34 (238)
+|.+|+. ++...|..+.+..|. .|= +.|.
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C~-k~Hk 43 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVCF-RKHK 43 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHHH-HHHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHHH-HHHH
Confidence 5999999 999999999999997 774 4443
No 48
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.56 E-value=23 Score=26.61 Aligned_cols=29 Identities=24% Similarity=0.650 Sum_probs=23.1
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 026438 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (238)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~ 30 (238)
|++.|-.|+ +.-+||=.+-...+|..|..
T Consensus 35 m~VkCp~C~-~~~~VFShA~t~V~C~~Cgt 63 (86)
T 3iz6_X 35 MDVKCQGCF-NITTVFSHSQTVVVCPGCQT 63 (86)
T ss_dssp EEEECTTTC-CEEEEETTCSSCCCCSSSCC
T ss_pred eEEECCCCC-CeeEEEecCCcEEEccCCCC
Confidence 677888888 57788888888888888873
No 49
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.40 E-value=51 Score=27.19 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=40.6
Q ss_pred CccccccCCCCcEEEcccc-cccchhhhchhcccCcccccccccceeccccCCCCCccccccCceEEEec--cccccccc
Q 026438 2 KIQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFCK 78 (238)
Q Consensus 2 ~~~Cd~C~~apA~vyC~aD-~A~LC~~CD~~vHsaN~La~kH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~--~D~a~LC~ 78 (238)
...|-.|++. .+++.+.- ...||..|-...+..... -..-.....|..|.+-...+.|. .+...||.
T Consensus 36 e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~---------~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~ 105 (159)
T 3a1b_A 36 EDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQ---------YDDDGYQSYCTICCGGREVLMCGNNNCCRCFCV 105 (159)
T ss_dssp GGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTC---------BCTTSSBSSCTTTSCCSEEEECSSTTTCCEEEH
T ss_pred cCcccCCCCc-CccccCCCccchhhHHHHHHHhhcccc---------cCCCCCcceeeEecCCCeEEeeCCCCCCCchhH
Confidence 4567777653 22233322 456677776555543211 01111234599999888777787 67888888
Q ss_pred cCC
Q 026438 79 DCD 81 (238)
Q Consensus 79 ~CD 81 (238)
.|-
T Consensus 106 ~CI 108 (159)
T 3a1b_A 106 ECV 108 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 50
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.79 E-value=77 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=22.2
Q ss_pred ccccccCCCC---cEEEccccc-ccchhhhchhc
Q 026438 3 IQCDVCEKAP---ATVICCADE-AALCAKCDVEV 32 (238)
Q Consensus 3 ~~Cd~C~~ap---A~vyC~aD~-A~LC~~CD~~v 32 (238)
+.||.|+..+ -.+.|..+. --||..|-..-
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 5799999765 456688775 45999997553
Done!