BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026440
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+ +L+ A + D G TPL A E A LL+ GA + +E+KE T L A
Sbjct: 154 MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Query: 222 NDFRPILIDAAKAMLEG 238
IL K M+EG
Sbjct: 214 GGLGLIL----KRMVEG 226
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 83/149 (55%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
GA++N+ ++ GCT LH AS + +L+E GA DA D T + A N ++
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 197 LLLIRHGADVDVEDKEGYTVLGRASNDFR 225
+L+ + A +++D EG T L A ++ R
Sbjct: 156 HILLYYKASTNIQDTEGNTPLHLACDEER 184
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D + LH+AAS G E+V+ LL VNAV++ G P+H AAS I ML
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLG---KGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GA+ + K+ TA+H AA+KG LK++ +L+ A N +D G T LH
Sbjct: 126 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
+LL+ +GA + +K +TPL A
Sbjct: 186 EEAKLLVSQGASIYIENKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+ +L+ A + D G TPL A E A LL+ GA + +E+KE T L A
Sbjct: 155 MIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Query: 222 NDFRPILIDAAKAMLEG 238
IL K M+EG
Sbjct: 215 GGLGLIL----KRMVEG 227
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 83/149 (55%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
GA++N+ ++ GCT LH AS + +L+E GA DA D T + A N ++
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 197 LLLIRHGADVDVEDKEGYTVLGRASNDFR 225
+L+ + A +++D EG T L A ++ R
Sbjct: 157 HILLYYKASTNIQDTEGNTPLHLACDEER 185
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D + LH+AAS G E+V+ LL VNAV++ G P+H AAS I ML
Sbjct: 70 KDDAGWSPLHIAASAGRDEIVKALLG---KGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GA+ + K+ TA+H AA+KG LK++ +L+ A N +D G T LH
Sbjct: 127 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 186
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
+LL+ +GA + +K +TPL A
Sbjct: 187 EEAKLLVSQGASIYIENKEEKTPLQVA 213
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 100/187 (53%), Gaps = 3/187 (1%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+ +L+ A + D G TPL A E A L+ GA + +E+KE T L A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 222 NDFRPIL 228
IL
Sbjct: 214 GGLGLIL 220
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
GA +N+ ++ GCT LH AS + +L+E GA DA D T + A N ++
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 197 LLLIRHGADVDVEDKEGYTVLGRASNDFR 225
+L+ + A +++D EG T L A ++ R
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEER 184
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D + LH+AAS G E+V+ LL VNAV++ G P+H AAS I ML
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLV---KGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GA+ + K+ TA+H AA+KG LK+V +L+ A N +D G T LH
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
+ L+ +GA + +K +TPL A
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
TALH S G++ + E L++ G V+ D AG +PL A E+ L+ GA V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 209 EDKEGYTVLGRASNDFRPILIDAAKAMLEG 238
++ G T L A++ R + A +LEG
Sbjct: 102 VNQNGCTPLHYAASKNRH---EIAVMLLEG 128
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 100/187 (53%), Gaps = 3/187 (1%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+ +L+ A + D G TPL A E A L+ GA + +E+KE T L A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 222 NDFRPIL 228
IL
Sbjct: 214 GGLGLIL 220
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA 196
GA +N+ ++ GCT LH AS + +L+E GA DA D T + A N ++
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 197 LLLIRHGADVDVEDKEGYTVLGRASNDFR 225
+L+ + A +++D EG T L A ++ R
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEER 184
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D + LH+AAS G E+V+ LL VNAV++ G P+H AAS I ML
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLV---KGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GA+ + K+ TA+H AA+KG LK+V +L+ A N +D G T LH
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
+ L+ +GA + +K +TPL A
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDV 208
TALH S G++ + E L++ G V+ D AG +PL A E+ L+ GA V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 209 EDKEGYTVLGRASNDFRPILIDAAKAMLEG 238
++ G T L A++ R + A +LEG
Sbjct: 102 VNQNGCTPLHYAASKNRH---EIAVMLLEG 128
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ L+ E+ VNA D +G P+H AA G+ IV++L+SKGADVN K+
Sbjct: 11 AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
GRT LHYAA +G +IV+LLIS+GA +N+KD G T LH A G+ + +LLI +GA
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
+V+ +D G+TPL A N+E+ LL + G
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA GN V+ L+ GADVN + GRT LHYAA +G +IV+LLIS+GA +N+KD G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + +LLI +GA+V+A D G+TPL A +KE+ LLI GADV+
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 208 VEDKEGYTVL 217
D +G T L
Sbjct: 131 TSDSDGRTPL 140
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 3/128 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH E+V++L+S VNA D +G P+H AA G+ IV++L+SK
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GADVN K+ GRT LHYAA +G +IV+LLIS+GA +N+ D G T L GN +
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIV 152
Query: 164 ELLIEEGA 171
+LL ++G
Sbjct: 153 KLLEKQGG 160
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH E+V++L+S VNA D +G P+H AA G+ IV++L
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
+SKGADVN + GRT L A G +IV+LL +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V+ LI GA +N+ D G T LH A G+ + +LLI +GA+V+A D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
+TPL A +KE+ LLI GADV+ +D +G T L A+ +
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 113
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 98/153 (64%), Gaps = 3/153 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ L+ E+ VNA D +G P+H AA G+ +V++L+SKGADVN K+
Sbjct: 11 AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
GRT LH+AA G ++V+LLIS+GA +N+KD G T LH A G+ + +LLI +GA
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
+V+ +D G+TPL A N+EV LL + G
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA GN V+ L+ GADVN + GRT LH+AA G ++V+LLIS+GA +N+KD G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + +LLI +GA+V+A D G+TPL +A +KEV LLI GADV+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 208 VEDKEGYTVL 217
D +G T L
Sbjct: 131 TSDSDGRTPL 140
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 3/128 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH EVV++L+S VNA D +G P+H AA G+ +V++L+SK
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GADVN K+ GRT LH+AA G ++V+LLIS+GA +N+ D G T L GN +
Sbjct: 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVV 152
Query: 164 ELLIEEGA 171
+LL ++G
Sbjct: 153 KLLEKQGG 160
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 60/101 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V+ LI GA +N+ D G T LH A G+ + +LLI +GA+V+A D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+TPL +A +KEV LLI GADV+ +D +G T L A+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH EVV++L+S VNA D +G P+H AA G+ +V++L
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
+SKGADVN + GRT L A G ++V+LL +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 98/150 (65%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+KDK G T LH A G+ + E+L++ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+TP A+ N+++A +L +
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK G T GN
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE 147
Query: 161 ALCELL 166
+ E+L
Sbjct: 148 DIAEVL 153
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA G V +L++ GADVN K+ G T LH AA +G L+IVE+L+ GA +N+KDK
Sbjct: 8 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G T LH A G+ + E+L++ GA+V+A DK G TPL A + E+ +L++ GADV
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 207 DVEDKEGYT 215
+ +DK G T
Sbjct: 128 NAQDKFGKT 136
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A G +L+ GA+V+A DK G TPL A + E+ +L++ GADV+ +DK+GY
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 215 TVLGRASND 223
T L A+ +
Sbjct: 70 TPLHLAARE 78
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+KDK G T LH A G+ + E+L++ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+TP A+ ++++A +L +
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK G T G+
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
Query: 161 ALCELL 166
+ E+L
Sbjct: 148 DIAEVL 153
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA G V +L++ GADVN K+ G T LH AA +G L+IVE+L+ GA +N+KDK
Sbjct: 8 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G T LH A G+ + E+L++ GA+V+A DK G TPL A + E+ +L++ GADV
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 207 DVEDKEGYT 215
+ +DK G T
Sbjct: 128 NAQDKFGKT 136
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 65/103 (63%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+KDK G T LH A G+ + E+L++ GA+V+A DK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
TPL A + E+ +L++ GADV+ +DK+GYT L A+ +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ LL E+ NA D +G P+H AA G+ IV++LLSKGAD N K+
Sbjct: 11 AAENGNKDRVKDLL---ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
GRT LHYAA G +IV+LL+S+GA N+KD G T LH A G+ + +LL+ +GA
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
+ + +D G+TPL A N+E+ LL + G
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH E+V++LLS NA D +G P+H AA G+ IV++LLSK
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GAD N K+ GRT LHYAA G +IV+LL+S+GA N+ D G T L GN +
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Query: 164 ELLIEEGA 171
+LL ++G
Sbjct: 153 KLLEKQGG 160
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 78/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA GN V+ LL GAD N + GRT LHYAA G +IV+LL+S+GA N+KD G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + +LL+ +GA+ +A D G+TPL A +KE+ LL+ GAD +
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 208 VEDKEGYTVL 217
D +G T L
Sbjct: 131 TSDSDGRTPL 140
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH E+V++LLS NA D +G P+H AA G+ IV++L
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
LSKGAD N + GRT L A G +IV+LL +G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V+ L+ GA N+ D G T LH A G+ + +LL+ +GA+ +A D G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+TPL A +KE+ LL+ GAD + +D +G T L A+
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 96/148 (64%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+KDK G T LH A G+ + E+L++ GA
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
L E+L
Sbjct: 160 DLAEIL 165
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 82/130 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN K+ G T LH AA +G L+IVE+L+ GA +N+KDK G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A DK G TPL A + E+ +L++ GADV+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 65/103 (63%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+KDK G T LH A G+ + E+L++ GA+V+A DK G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
TPL A + E+ +L++ GADV+ +DK+GYT L A+ +
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
+ D+N + G T LH A K W ++ + LI GA + KDK LHR AS G
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEG 213
+ L ELL G + V+ DK G TPL +A+ + + A+LL+ ++GA+ D+ D +G
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISRGAKIN- 141
P+H A V+ LL + L+ D GR LH++ S +I L+S+ +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 --SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ--TPLMNAVICYNKEVAL 197
D G T H S GN + + L + + D Q T L AV EV+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 198 LLIRHGADVDVEDKEGYTVLGRASN 222
LI +GA V ++DK L RA++
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAAS 149
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
+ D+N + G T LH A K W ++ + LI GA + KDK LHR AS G
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEG 213
+ L ELL G + V+ DK G TPL +A+ + + A+LL+ ++GA+ D+ D +G
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISRGAKIN- 141
P+H A V+ LL + L+ D GR LH++ S +I L+S+ +N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 --SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ--TPLMNAVICYNKEVAL 197
D G T H S GN + + L + + D Q T L AV EV+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 198 LLIRHGADVDVEDKEGYTVLGRASN 222
LI +GA V ++DK L RA++
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAAS 149
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
+ RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GADVN K+ GRT LH AA G L++V+LL+ GA +N+KDK G T LH A G+ +
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 164 ELLIEEGA 171
+LL+E GA
Sbjct: 118 KLLLEAGA 125
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 81/124 (65%)
Query: 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
G P+H AA G++ +V++LL GADVN K+ GRT LH AA G L++V+LL+ GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLI 200
N+KDK G T LH A G+ + +LL+E GA+V+A DK G+TPL A + EV LL+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 201 RHGA 204
GA
Sbjct: 122 EAGA 125
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
GRT LH AA G L++V+LL+ GA +N+KDK G T LH A G+ + +LL+E GA+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAK 233
+A DK G+TPL A + EV LL+ GADV+ +DK G T L A+ + ++ K
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH---LEVVK 118
Query: 234 AMLE 237
+LE
Sbjct: 119 LLLE 122
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ + RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++L
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
L GADVN K+ GRT LH AA G L++V+LL+ GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
+ D+N + G T LH A K W ++ + LI GA + KDK LHR AS G
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEVALLLI-RHGADVDVEDKEG 213
+ L ELL G + V+ DK G TPL +A+ + + A+LL+ ++GA+ D+ D +G
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+D T LH+AA GHPE+VE+LL + VNA D +GW P+H AA G++ IVE+L
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN ++ G T LH AA +G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
L E+L
Sbjct: 160 DLAEIL 165
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G P+H AA IG+ IVE+LL GADVN ++
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N++D G T LH A G+ + E+L++ GA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+T ++ N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN +D G T LH AA G +IVE+L+ GA +N++D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A + E+ +L++HGADV+
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D G T LH A G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
TPL A + E+ +L+++GADV+ +D G T L A++
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAAD 122
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A G +L+ GA+V+A D G TPL A + E+ +L++HGADV+ D +G+
Sbjct: 22 ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW 81
Query: 215 TVLGRASND 223
T L A+++
Sbjct: 82 TPLHLAADN 90
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN K+
Sbjct: 21 AARAGQDDEVRILMA---NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA +G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 82/130 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +N+KD +G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A+D G TPL A + E+ +L+++GADV+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N++D G T LH A G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
TPL A + E+ +L+++GADV+ D G+T L A+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L++VE+L+ GA +N+ D G T LH A+ G+ + E+L++ GA
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+T ++ N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA G L+IVE+L+ GA +N+ D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A + E+ +L++HGADV+
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ +VE+LL GAD
Sbjct: 49 TPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D VG T LH A G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
TPL A + EV +L+++GADV+ D G+T L A+N
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAAN 122
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA +G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+ D +G T LH A TG+ + E+L++ GA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA+D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 79/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A + E+ +L+++GADV+
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 62/102 (60%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N++D G T LH A G+ + E+L++ GA+V+A D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
TPL A + E+ +L+++GADV+ +D G T L A++
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAAD 122
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ LL E+ VNA D +G P+H AA G+ +V++LLS+GAD N K+
Sbjct: 11 AAENGNKDRVKDLL---ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G+T LH AA G ++V+LL+S+GA N+KD G T LH A G+ + +LL+ +GA
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
+ + +D G+TPL A N+EV LL + G
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 78/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA GN V+ LL GADVN + G+T LH AA G ++V+LL+S+GA N+KD G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + +LL+ +GA+ +A D G+TPL A +KEV LL+ GAD +
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 208 VEDKEGYTVL 217
D +G T L
Sbjct: 131 TSDSDGRTPL 140
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 3/128 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D +T LH+AA GH EVV++LLS + A+ NA D +G P+H AA G+ +V++LLS+
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLS--QGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GAD N K+ G+T LH AA G ++V+LL+S+GA N+ D G T L GN +
Sbjct: 93 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVV 152
Query: 164 ELLIEEGA 171
+LL ++G
Sbjct: 153 KLLEKQGG 160
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D +T LH+AA GH EVV++LLS + A+ NA D +G P+H AA G+ +V++L
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLS--QGAD-PNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
LS+GAD N + GRT L A G ++V+LL +G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 82/130 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA+ G V +L++ GADVN +D G T LH AA+ G L+IVE+L+ GA +N+ D G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D+AG TPL A + E+ +L++HGADV+
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 208 VEDKEGYTVL 217
+D G T
Sbjct: 133 AQDALGLTAF 142
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA+ G + V IL++ + VNA D+ G P+H AA+ G + IVE+LL GADVN +
Sbjct: 13 AAAAGQDDEVRILMA---NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D+ G T LH A +G + E+L++ GA
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 172 EVDATDKAGQTPL 184
+V+A D G T
Sbjct: 130 DVNAQDALGLTAF 142
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D+ T LH+AA+ G E+VE+LL ++ VNA D G P+H AA G++ IVE+LL
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLL---KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
GADVN + G T LH AA G L+IVE+L+ GA +N++D +G TA + G
Sbjct: 93 KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQED 152
Query: 162 LCELL 166
L E+L
Sbjct: 153 LAEIL 157
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
L A+ G +L+ GA+V+ATD G TPL A E+ +L+++GADV+ D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 211 KEGYTVLGRASND 223
G T L A+ D
Sbjct: 70 SAGITPLHLAAYD 82
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 85/130 (65%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++D G+T LH AA KG L+IVE+L+ GA +N+ DK+G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+ATD G TPL A + E+ +L+++GADV+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+T ++ N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+D +T LH+AA GH E+VE+LL + VNA D+ G P+H AA G++ IVE+L
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
L E+L
Sbjct: 160 DLAEIL 165
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N++D G T LH A G+ + E+L++ GA+V+A DK G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
TPL A + + E+ +L+++GADV+ D G+T L A++
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAAD 122
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH+AA+ GH E+VE+LL + VNAVD G P+H AAS+G++ IVE+LL GA
Sbjct: 36 RTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN K+ G T L+ AA G L+IVE+L+ GA +N++DK G TA GN L E+
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEI 152
Query: 166 L 166
L
Sbjct: 153 L 153
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ AN A D G P+H AA++G++ IVE+LL GADVN +
Sbjct: 9 AARAGQDDEVRILMANGADAN---AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AAS G L+IVE+L+ GA +N+KD G T L+ A G+ + E+L++ GA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 80/130 (61%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GAD N + GRT LH AA+ G L+IVE+L+ GA +N+ D G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH AS G+ + E+L++ GA+V+A D G TPL A + E+ +L++HGADV+
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 129 AQDKFGKTAF 138
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
L A G +L+ GA+ +A D G+TPL A + E+ +L+R+GADV+ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 211 KEGYTVLGRASN 222
G T L A++
Sbjct: 66 TNGTTPLHLAAS 77
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D +G+ P+H AAS G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA+ G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AAS G L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A+TG+ + E+L++ GA+V+A D G TPL A + E+ +L++HGADV+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D T LH+AAS GH E+VE+LL ++ VNA D G P+H AA+ G++ IVE+LL
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
GADVN ++ G T LH AA G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 162 LCELL 166
L E+L
Sbjct: 161 LAEIL 165
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 62/101 (61%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D G T LH AS G+ + E+L++ GA+V+A+D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
TPL A + E+ +L++HGADV+ D +G+T L A+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN K+D G T LH AA++G L+IVE+L+ GA +N++DK G TA + GN L E+L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGRDDEVRILMA---NGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+KD G T LH A+ G+ + E+L++ GA
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 79/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA G L+IVE+L+ GA +N+ D +G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A + E+ +L+++GADV+
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A G +L+ GA+V+A D G TPL A + E+ +L+++GADV+ D G
Sbjct: 22 ARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS 81
Query: 215 TVLGRASN 222
T L A++
Sbjct: 82 TPLHLAAH 89
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D+ T LH+AA+ GH E+VE+LL VNA D+ G + + GN + E+L
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 92/150 (61%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
+ G T LH AA G L+IVE+L+ GA +N+KD G T LH A G+ + E+L++ GA
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+T ++ N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL GA
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN K+ G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 166 L 166
L
Sbjct: 165 L 165
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA G L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A + E+ +L+++GADV+
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D +G T LH A TG+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
TPL A + E+ +L++HGADV+ +D EG+T L A+ D
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD 123
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+ + GH E++E+LL + A VNA D+ GW P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLVVNNGHLEIIEVLL---KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H + G++ I+E+LL ADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+T ++ N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH + G L+I+E+L+ A +N+ DK G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A + E+ +L+++GADV+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 60/94 (63%)
Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
V +L++ GA +N+ D G T LH + G+ + E+L++ A+V+A+DK+G TPL A
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAY 89
Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
+ E+ +L+++GADV+ D +GYT L A+ D
Sbjct: 90 RGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED 123
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 81/130 (62%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA+ G L+IVE+L+ GA +N+ D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A I + E+ +L++HGADV+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA+ GH E+VE+LL + VNA+D G P+H AA IG++ IVE+LL GAD
Sbjct: 49 TPLHLAATYGHLEIVEVLL---KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA+ G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D G T LH A+ G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
TPL A + + E+ +L++HGADV+ D G T L A+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 80/130 (61%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA+ G L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A I + E+ +L++HGADV+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA+ GH E+VE+LL + VNA+D G P+H AA IG++ IVE+LL GAD
Sbjct: 49 TPLHLAATYGHLEIVEVLL---KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA+ G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V+A DK G+T ++ N+++A +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D G T LH A+ G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
TPL A + + E+ +L++HGADV+ D G T L A+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T L AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
+V+A DK G+T ++ N+++A +L +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNAVD G P+ AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 79/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T L A G+ + E+L++ GA+V+A D G TPL A + + E+ +L+++GADV+
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N++D G T LH A G+ + E+L++ GA+V+A D AG
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
TPL A + + E+ +L+++GADV+ D EG+T L A+
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH E+VE+LL ++ VNA D+ G + GN + E+L
Sbjct: 114 HTPLHLAAMFGHLEIVEVLL---KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNAVD G P+H AA G++ IVE+LL GADV+ +
Sbjct: 21 AARAGQDDEVRILIA---NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 80/130 (61%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +++ D G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A TG+ + E+L++ GA+V+A D G TPL A + E+ +L+++GADV+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + V+A D G+ P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAVSGHLEIVEVLL---KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE 164
VN + G T LH AA +G L+IVE+L+ GA +N++DK G TA GN L +
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +LI+ GA +N+ D G T LH A +G+ + E+L++ GA+VDA D G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
TPL A + + E+ +L+++GADV+ D G T L A+++
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA EV LL SAN A +G P+H AA G+ +V +LLSK A+
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
NL N G T LH A +G + + ++LI G +++ ++G T LH + GN L + L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
++ A+V+A K G +PL A + ++ LL+++GA + +G T L A
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH EV + LL ++ VNA ++ P+H AA IG+ +V++LL A+
Sbjct: 49 TPLHMAARAGHTEVAKYLL---QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
NL G T LH AA +G ++ V L+ + A K G T LH A G + ELL
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRP 226
+E A +A K G TPL AV N ++ LL+ G GYT L A+ +
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ- 224
Query: 227 ILIDAAKAMLE 237
++ A+++L+
Sbjct: 225 --VEVARSLLQ 233
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVA + ++V++LL S + + G+ P+H AA V + LL G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
N ++ G T LH AA +G ++V LL+S+ A N +K G T LH A G+ + ++L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
I+ G VDAT + G TPL A N ++ L++H ADV+ + K GY+ L +A+
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVAA G V E+LL D N A + G P+H A N+ IV++LL +G
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ G T LH AA + +++ L+ G N++ G T LH A G++ + LL
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASN 222
+ + A + +K+G TPL + VA +LI+HG VD + GYT L AS+
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 3/183 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+ DD+T LH AA GH +V++LL + + N+ G P+H AA G+V V L
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLAL 132
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L K A G T LH AA G +++ ELL+ R A N+ K G T LH N
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
+ +LL+ G + G TPL A EVA L+++G + E +G T L A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252
Query: 221 SND 223
+ +
Sbjct: 253 AQE 255
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
P+H A+ +G++ IV+ LL +GA N+ N T LH AA G ++ + L+ AK+N+K
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
K T LH A G++ + +LL+E A + AG TPL A + E L L+
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 204 ADVDVEDKEGYTVLGRAS 221
A K+G+T L A+
Sbjct: 137 ASQACMTKKGFTPLHVAA 154
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N T LH+ A GH V ++L+ + +V+A G+ P+H A+ GN+ +V+ LL
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI---KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
ADVN K G + LH AA +G IV LL+ GA N G T L
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%)
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
T LH A+ G L IV+ L+ RGA N + T LH A G++ + + L++ A+V+A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
K QTPL A + + LL+ + A+ ++ G+T L A+ +
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LL AA G + V IL++ + VNA D G P+H AA G++ IVE+LL GA
Sbjct: 16 RKLLE-AARAGQDDEVRILMA---NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DV+ + G T LH AA G L+IVE+L+ GA +N+ D G T LH A G + E+
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR 201
L++ GA+V+A DK G+T ++ N+++A +L +
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +++ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH A G+ + E+L++ GA+V+A D G TPL A E+ +L++HGADV+
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 208 VEDKEGYTVL 217
+DK G T
Sbjct: 141 AQDKFGKTAF 150
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
+D GR L AA G V +L++ GA +N+ D G T LH A +G+ + E+L++ G
Sbjct: 12 SDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 171 AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
A+VDA+D G TPL A + E+ +L+++GADV+ D +G T L A+
Sbjct: 71 ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA+DE+G P+H AA +G++ IVE+LL GADVN ++
Sbjct: 21 AARAGQDDEVRILMA---NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ G T LH AA +G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 70/112 (62%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +N++D G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
T LH A G+ + E+L++ GA+V+A DK G+T ++ N+++A +L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D+ G T LH A G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
TPL A I + E+ +L++HGADV+ +DK G T
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
GADVN ++ G+TA + G + E+L
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A G +L+ GA+V+A D+ G TPL A + E+ +L+++GADV+ ED G
Sbjct: 22 ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI 81
Query: 215 TVLGRAS 221
T L A+
Sbjct: 82 TPLHLAA 88
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 13 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
GADV+ K+ GG LH A S G ++ ELL+ GA +N D T LH A+ G +
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
C+LL++ GA+ ++ G TPL
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPL 149
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G+V V+ L + + VN ++ GR T LH+AA + +VE L+ GA +++KDK
Sbjct: 19 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
G LH S G+ + ELL++ GA V+ D TPL A E+ LL++HGAD
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Query: 206 VDVEDKEGYTVL 217
++++G T L
Sbjct: 138 PTKKNRDGNTPL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 9 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
GADV+ K+ GG LH A S G ++ ELL+ GA +N D T LH A+ G +
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
C+LL++ GA+ ++ G TPL
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPL 145
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G+V V+ L + + VN ++ GR T LH+AA + +VE L+ GA +++KDK
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
G LH S G+ + ELL++ GA V+ D TPL A E+ LL++HGAD
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Query: 206 VDVEDKEGYTVL 217
++++G T L
Sbjct: 134 PTKKNRDGNTPL 145
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVG--CTALHRGASTGNSALCELLIEEGAEVDATDK 178
AA G ++ V+ L + + +N +D G T LH A ++ E L++ GA+V A DK
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 179 AGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
G PL NA + EVA LL++HGA V+V D +T L A+
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 11 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
GADV+ K+ GG LH A S G ++ ELL+ GA +N D T LH A+ G +
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
C+LL++ GA+ ++ G TPL
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPL 147
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G+V V+ L + + VN ++ GR T LH+AA + +VE L+ GA +++KDK
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
G LH S G+ + ELL++ GA V+ D TPL A E+ LL++HGAD
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Query: 206 VDVEDKEGYTVL 217
++++G T L
Sbjct: 136 PTKKNRDGNTPL 147
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 140 INSKDKVG--CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVAL 197
+N +D G T LH A ++ E L++ GA+V A DK G PL NA + EVA
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 198 LLIRHGADVDVEDKEGYTVLGRAS 221
LL++HGA V+V D +T L A+
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAA 118
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN ++
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GRT LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 69/103 (66%)
Query: 97 VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
V +L++ GADVN +D G T LH AA +G L+IVE+L+ GA +N++D G T LH A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
G+ + E+L+E GA+V+A DK G+T ++ N+++A +L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%)
Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
V +L++ GA +N+ D G T LH A G+ + E+L++ GA+V+A D G+TPL A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVL 217
+ E+ +L+ +GADV+ +DK G T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+L+ GA+V+A D AG TPL A + E+ +L++HGADV+ D G T L A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RT LH+AA+ GH E+VE+LL E VNA D+ G + GN + E+L
Sbjct: 81 RTPLHLAATVGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GRT LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 97 VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
V +L++ GADVN +D G T LH AA +G L+IVE+L+ GA +N+ D G T LH A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
G+ + E+L+E GA+V+A DK G+T ++ N+++A +L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
V +L++ GA +N+ D G T LH A G+ + E+L++ GA+V+A+D G+TPL A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVL 217
+ E+ +L+ +GADV+ +DK G T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+L+ GA+V+A D AG TPL A + E+ +L++HGADV+ D G T L A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RT LH+AA+ GH E+VE+LL E VNA D+ G + GN + E+L
Sbjct: 81 RTPLHLAATVGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GRT LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 97 VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
V +L++ GADVN +D G T LH AA +G L+IVE+L+ GA +N+ D G T LH A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
G+ + E+L+E GA+V+A DK G+T ++ N+++A +L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
V +L++ GA +N+ D G T LH A G+ + E+L++ GA+V+A+D G+TPL A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVL 217
+ E+ +L+ +GADV+ +DK G T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+L+ GA+V+A D AG TPL A + E+ +L++HGADV+ D G T L A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RT LH+AA+ GH E+VE+LL E VNA D+ G + GN + E+L
Sbjct: 81 RTPLHLAATVGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++G +P+H AA G ++ +LL GA+ +N LH A +G ++V+ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
+ AK N KD G T L S G+ L LL++ GA ++A++ G T L AVI +
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 194 EVALLLIRHGADVDVEDKEGYTVLGRASNDFR 225
V LL+ HGA V V +K T + A + +
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RN D LH+A GH +VV+ LL +S N D G P+ A S G+ +V +L
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLL---DSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GA +N N+ G TALH A + + +VELL+ GA + +K TA+ + NS
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV--DCAEQNS 229
Query: 161 ALCELL 166
+ ELL
Sbjct: 230 KIMELL 235
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
G P+H AA G++ +V++LL GADVN K+ GRT LH AA G L++V+LL+ GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGA 171
N+KDK G T LH A G+ + +LL+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
+ RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
GADVN K+ GRT LH AA G L++V+LL+ GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
GRT LH AA G L++V+LL+ GA +N+KDK G T LH A G+ + +LL+E GA+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
+A DK G+TPL A + EV LL+ GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G T LH A G+ + +LL+E GA+V+A DK G+TPL A + EV LL+ GADV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 207 DVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
+ +DK G T L A+ + ++ K +LE
Sbjct: 62 NAKDKNGRTPLHLAARNGH---LEVVKLLLE 89
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ + RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++L
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 101 LSKGA 105
L GA
Sbjct: 88 LEAGA 92
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D +G P+H AA ++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR 201
T LH A G+ + E+L++ GA+V+A DK G+T ++ N+++A +L +
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D+ G T LH A + + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
TPL A + + E+ +L++HGADV+ +DK G T
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 42 NDDDR---TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N +DR T LH+AA H E+VE+LL + VNA D +G P+H AA G++ IVE
Sbjct: 41 NANDRKGNTPLHLAADYDHLEIVEVLL---KHGADVNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 99 MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
+LL GADVN ++ G+TA + G + E+L
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A G +L+ GA+V+A D+ G TPL A + E+ +L++HGADV+ D +G
Sbjct: 22 ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 215 TVLGRAS 221
T L A+
Sbjct: 82 TPLHLAA 88
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D RT L AA H E V+ L+ ++ +V+ D EG +H AA G+ +V+ LL
Sbjct: 41 SEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 102 SKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
S G DVN ++DGG T + +A + +V+LL+S+G+ IN +D LH A +G
Sbjct: 98 SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
+ E+L+ ++ A + G +PL A + +L + +DV +++KEG T L A
Sbjct: 158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Query: 221 S 221
S
Sbjct: 218 S 218
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH EVV+ LLS + VN D+ GW P+ A +V +V++LLSKG+D
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+N++++ LH+AA G + I E+L++ +++ + G + LH A L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 167 IEEGAEVDATDKAGQTPLMNAVI 189
+ ++V +K G+TPL A +
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASL 219
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
+P+H+AA G+V I ML+ GA+++ ++ RT L AA L+ V+ LI GA ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDKAGQTPLMNAVICYNKEVALLLIR 201
KD G T LH A G+ + + L+ G +V+ D G TP++ A + ++ LL+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 202 HGADVDVEDKEGYTVLGRAS 221
G+D+++ D E L A+
Sbjct: 133 KGSDINIRDNEENICLHWAA 152
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
+ C V + L +D + N +N D+ G++P+H A G +VEML+ +GA +N+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
N G T LH AAS G IV+ L+ A IN+ ++ G LH G + E L+ G
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 171 AEVDATDKAGQTPL 184
A V +K G+ P+
Sbjct: 129 ALVSICNKYGEMPV 142
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 85 IHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
I + GN V + L D+N +D G + LH+A +G +VE+LI RGA+IN
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
++ T LH AS G+ + + L++ A+++A ++ G PL A +VA L+ +G
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 204 ADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
A V + +K G + +A R +L + A+ M
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A G VVE+L+ NV+N D+ P+H AAS G+ IV+ LL AD+N
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
N+ G LHYA G ++ E L++ GA ++ +K G
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH+AAS GH ++V+ LL +NAV+E G P+H A G + E L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
+ GA V++ N G + A + + ELL R K+
Sbjct: 126 ANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKM 160
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
+ C V + L +D + N +N D+ G++P+H A G +VEML+ +GA +N+
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
N G T LH AAS G IV+ L+ A IN+ ++ G LH G + E L+ G
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 171 AEVDATDKAGQTPL 184
A V +K G+ P+
Sbjct: 124 ALVSICNKYGEMPV 137
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 85 IHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
I + GN V + L D+N +D G + LH+A +G +VE+LI RGA+IN
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
++ T LH AS G+ + + L++ A+++A ++ G PL A +VA L+ +G
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 204 ADVDVEDKEGYTVLGRASNDFRPILIDAAKAM 235
A V + +K G + +A R +L + A+ M
Sbjct: 124 ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 155
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A G VVE+L+ NV+N D+ P+H AAS G+ IV+ LL AD+N
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
N+ G LHYA G ++ E L++ GA ++ +K G
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH+AAS GH ++V+ LL +NAV+E G P+H A G + E L+
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
+ GA V++ N G + A + + ELL R K+
Sbjct: 121 ANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKM 155
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL + + VNA D G P+H AA +G++ IVE+LL GADVN
Sbjct: 21 AARAGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ GRT LH AA L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L + GADVN + G T LH AA G L+IVE+L+ GA +N+ G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIR 201
T LH A + + E+L++ GA+V+A DK G+T ++ N+++A +L +
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
V +L + GA +N+ D G T LH A G+ + E+L++ GA+V+AT G+TPL A
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVL 217
+ E+ +L++HGADV+ +DK G T
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E+VE+LL ++ VNA G P+H AA ++ IVE+LL GA
Sbjct: 48 HTPLHLAAMLGHLEIVEVLL---KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELL 133
DVN ++ G+TA + G + E+L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A G +L GA+V+A D G TPL A + + E+ +L+++GADV+ G
Sbjct: 22 ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR 81
Query: 215 TVLGRAS 221
T L A+
Sbjct: 82 TPLHLAA 88
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 18/186 (9%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH A ++VE+LL A+ V + G P AA G+V ++++ LSKGAD
Sbjct: 61 TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV----------GCTALHRGAS 156
VN + G TA AA G +K ++ L RGA +N + K G TAL A
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 157 TGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYN----KEVALLLIRHGADVDVEDK 211
G+ + ++L++E GA+V+A D G+ L++A++ + + + LL+ HGADV+V +
Sbjct: 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 237
Query: 212 EGYTVL 217
G T L
Sbjct: 238 RGKTPL 243
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 50 HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
H+ E V+++ + E VN +EEG W P+H+A + IVE+LL GAD
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
L+ G T AA G +K+++L +S+GA +N D G TA A G + L +
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 169 EGAEV----------DATDKAGQTPLMNAVICYNKEV-ALLLIRHGADVDVEDKEGYTVL 217
GA V + K G T LM+A + EV +LL GADV+ D G L
Sbjct: 147 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 52/219 (23%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R + T +AA G +++++ LS VN D G+ AA G V ++ L
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCT 149
+GA+VNL+ GG TAL AA KG ++++++L+ GA +N+ D +G
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 150 AL-HRGASTGNS---ALCELLIEEGA---------------------------------- 171
AL H S+ +S A+ LL++ GA
Sbjct: 205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 264
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
E++ TD G+T L+ AV K++A LL + GA D D
Sbjct: 265 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 129 IVELLISRGAKIN-SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+V+ L+ GA +N +++ G T LH + ELL+ GA+ K G TP + A
Sbjct: 40 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
I + ++ L + GADV+ D G+T A+
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 133
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 69/166 (41%), Gaps = 45/166 (27%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNV---TIVEMLLS 102
T L AA GH EV++ILL DE VNA D G A IH+ S + I +LL
Sbjct: 170 TALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 103 KGADVNLKNDGGRTALHYAASKGWL----------------------------------K 128
GADVN++ + G+T L A K L K
Sbjct: 228 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 287
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
I ELL RGA + D V TA + +L ++L+ GA+ D
Sbjct: 288 IAELLCKRGASTDCGDLV-MTA----RRNYDHSLVKVLLSHGAKED 328
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 18/186 (9%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH A ++VE+LL A+ V + G P AA G+V ++++ LSKGAD
Sbjct: 41 TPLHNAVQMSREDIVELLLR--HGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV----------GCTALHRGAS 156
VN + G TA AA G +K ++ L RGA +N + K G TAL A
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 157 TGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYN----KEVALLLIRHGADVDVEDK 211
G+ + ++L++E GA+V+A D G+ L++A++ + + + LL+ HGADV+V +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 212 EGYTVL 217
G T L
Sbjct: 218 RGKTPL 223
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 50 HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
H+ E V+++ + E VN +EEG W P+H+A + IVE+LL GAD
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
L+ G T AA G +K+++L +S+GA +N D G TA A G + L +
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 169 EGAEV----------DATDKAGQTPLMNAVICYNKEV-ALLLIRHGADVDVEDKEGYTVL 217
GA V + K G T LM+A + EV +LL GADV+ D G L
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 52/219 (23%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R + T +AA G +++++ LS + A+V N D G+ AA G V ++ L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLS--KGADV-NECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCT 149
+GA+VNL+ GG TAL AA KG ++++++L+ GA +N+ D +G
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 150 AL-HRGASTGNS---ALCELLIEEGA---------------------------------- 171
AL H S+ +S A+ LL++ GA
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
E++ TD G+T L+ AV K++A LL + GA D D
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 129 IVELLISRGAKINSKDKVG-CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+V+ L+ GA +N +++ G T LH + ELL+ GA+ K G TP + A
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
I + ++ L + GADV+ D G+T A+
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 56/138 (40%), Gaps = 40/138 (28%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNV---TIVEMLLS 102
T L AA GH EV++ILL DE VNA D G A IH+ S + I +LL
Sbjct: 150 TALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 103 KGADVNLKNDGGRTALHYAASKGWL----------------------------------K 128
GADVN++ + G+T L A K L K
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
Query: 129 IVELLISRGAKINSKDKV 146
I ELL RGA + D V
Sbjct: 268 IAELLCKRGASTDCGDLV 285
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH+AA GH E+LL S + VD P+H AAS G+ IVE+LL GADVN
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
K+ TALH+A ++VELLI GA ++++ K TA GN L E+L
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ D G +P+H AA G+ + E+LL G + +
Sbjct: 9 AARAGQDDEVRILMA----NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
RT LH AAS+G IVE+L+ GA +N+KD + TALH + + ELLI+ GA
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLL 199
+V K +T ++ N+++A +L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GA + G + LH AA G E+L+ G +++ KV
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVD 207
T LH AS G++ + E+L++ GA+V+A D T L A ++EV LLI++GADV
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 208 VEDK 211
+ K
Sbjct: 128 TQSK 131
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
V +L++ GA + D +G + LH A G+ + E+L+ G DA K +TPL A
Sbjct: 18 VRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS 76
Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVLGRAS 221
+ + +L++HGADV+ +D T L A+
Sbjct: 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWAT 108
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA DE G P++ A + G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
G T LH AA G L+I E+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 71/112 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN K++ G T L+ A + G L+IVE+L+ GA +N+ D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
T LH A G+ + E+L++ GA+V+A DK G+T ++ N+++A +L
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+KD+ G T L+ + G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV----LGRASNDFRPIL 228
TPL A + E+A +L++HGADV+ +DK G T +G + D IL
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T L++A + GH E+VE+LL ++ VNAVD G+ P+H AA IG++ I E+LL GAD
Sbjct: 49 TPLYLATAHGHLEIVEVLL---KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D+ G P+H AA ++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
G T LH A G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN ++ G T LH AA L+IVE+L+ GA +N+ D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
T LH A G+ + E+L++ GA+V+A DK G+T ++ N+++A +L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 60/97 (61%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N++DKVG T LH A + + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
+TPL + + E+ +L++HGADV+ +DK G T
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA H E+VE+LL ++ VNA+D G P+H A G++ IVE+LL GAD
Sbjct: 49 TPLHLAAMNDHLEIVEVLL---KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
L A G +L+ GA+V+A DK G TPL A + + E+ +L+++GADV+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 211 KEGYTVL 217
G T L
Sbjct: 78 AIGETPL 84
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 60/240 (25%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-- 106
LH A S GH EV E+LL + VNA+D + P+H AAS V + +LLS GAD
Sbjct: 95 LHNACSYGHYEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 107 ---------------------------------------------------VNLKNDGGR 115
+N K
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211
Query: 116 -TALHYAASKGWLK---IVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
TALH A + K + ELL+ +GA +N K+K T LH A ++ + E+L + GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDA 231
+++A D GQT L A + + + LL+ +G+D + +G+T + + IL ++
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSES 331
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 62 EILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
E L+++ NV +A D P+H AA V IV++LL GADV+ K+ GG LH
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
A S G ++ ELL+ GA +N+ D T LH AS +C LL+ GA+ + G
Sbjct: 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157
Query: 181 QT 182
++
Sbjct: 158 KS 159
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA GN + LL+ +VN GR T LH AA ++IV+LL+ GA +++KDK
Sbjct: 31 AARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
G LH S G+ + ELL++ GA V+A D TPL A EV LL+ HGAD
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Query: 206 VDVEDKEG 213
+ + G
Sbjct: 150 PTLVNCHG 157
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 10/125 (8%)
Query: 47 TLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
T LH A + HP +V E+LL + ANV N +++ P+H AA + ++E+L
Sbjct: 213 TALHCAVASLHPKRKQVAELLLR--KGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GA +N + G+TALH AA G L+ LL+S G+ + G TA A GN A+
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA----AQMGNEAVQ 325
Query: 164 ELLIE 168
++L E
Sbjct: 326 QILSE 330
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%)
Query: 128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
K++ LL ++ D T LH A + +LL++ GA+V A DK G PL NA
Sbjct: 39 KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA 98
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFR 225
+ EV LL++HGA V+ D +T L A++ R
Sbjct: 99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N D T LHVAA H +V+E+L + +NA+D G +H AA G++ +L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVL---HKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 101 LSKGADVNLKNDGGRTA 117
LS G+D ++ + G TA
Sbjct: 300 LSYGSDPSIISLQGFTA 316
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 63/97 (64%)
Query: 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
++G P+H+AA G+ V+ LLSKGADVN ++ G T LH AA G +IV+LL+++GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
+N++ K G T H G+ + +LL +GA+V+A
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D T LH AA GH E V+ LLS VNA ++G P+H AA G+ IV++LL+K
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
GADVN ++ G T H A G +IV+LL ++GA +N++
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
G T LH AA G + V+ L+S+GA +N++ K G T LH A G++ + +LL+ +GA+V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE 209
+A K G TP A + E+ LL GADV+
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R+ D T LH+AA GH E+V++LL+ VNA ++G P H A G+ IV++L
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 101 LSKGADVNLKNDG 113
+KGADVN ++ G
Sbjct: 95 DAKGADVNARSWG 107
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
K G T LH A G++ + L+ +GA+V+A K G TPL A + E+ LL+ GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 205 DVDVEDKEGYT 215
DV+ K+G T
Sbjct: 67 DVNARSKDGNT 77
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
K G TPL NA + E L+ GADV+ K+G T L
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL 46
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
IV++L+ G +N D G T L A GN C ++L+E GA+
Sbjct: 82 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 125
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%)
Query: 85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
+H A+ G + + + + +N ++ G T L +AA+ G + +VE L+ GA
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
K +AL S G + + ++L++ G +V+ D G TPL+ AV + + +L+ GA
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Query: 205 DVDVEDKEGY 214
D +E GY
Sbjct: 125 DPTIETDSGY 134
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 126 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 159
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176
++H A++G + + I + IN D+ G T L A+ G A+ E L++ GA+
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 177 DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
K ++ L A ++ +L+ G DV+ D G T L
Sbjct: 64 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
IV++L+ G +N D G T L A GN C ++L+E GA+
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 143
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%)
Query: 85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
+H A+ G + + + + +N ++ G T L +AA+ G + +VE L+ GA
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
K +AL S G + + ++L++ G +V+ D G TPL+ AV + + +L+ GA
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Query: 205 DVDVEDKEGY 214
D +E GY
Sbjct: 143 DPTIETDSGY 152
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 144 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 108 NLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
NL G + ++H A++G + + I + IN D+ G T L A+ G A+ E L
Sbjct: 12 NLYFQGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 71
Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
++ GA+ K ++ L A ++ +L+ G DV+ D G T L
Sbjct: 72 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 122
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
IV++L+ G +N D G T L A GN C ++L+E GA+
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 127
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%)
Query: 85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
+H A+ G + + + + +N ++ G T L +AA+ G + +VE L+ GA
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
K +AL S G + + ++L++ G +V+ D G TPL+ AV + + +L+ GA
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 205 DVDVEDKEGY 214
D +E GY
Sbjct: 127 DPTIETDSGY 136
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176
++H A++G + + I + IN D+ G T L A+ G A+ E L++ GA+
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 177 DKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
K ++ L A ++ +L+ G DV+ D G T L
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
D + T LH A GH +V L+ +++ D EG + IH AA G+ +IV L++
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKV-GCTALHRGASTGNS 160
KG DV++ + G T L +AA + + LL++ +N DK TALH GN+
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 161 ALCELLIEEGAEVDATDKAGQTPL 184
+ LL+E GA VDA + G++ L
Sbjct: 191 TVISLLLEAGANVDAQNIKGESAL 214
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN-LKNDGGRTALHYAASKGWL 127
E+ V D+E +H AA + +V+ +SKGA V+ L D T LH+A +G L
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89
Query: 128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+V L+ GA + D GC+ +H A G++++ LI +G +VD D+ G TPLM A
Sbjct: 90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Query: 188 VI-CYNKEVALLLIRHGADVDVEDK 211
++ + LL+ V++ DK
Sbjct: 150 AYRTHSVDPTRLLLTFNVSVNLGDK 174
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 41/128 (32%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI----------------------- 85
+H+AA GH +V L++ + V+ +D+ G P+
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 86 ------------HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVE 131
H A GN T++ +LL GA+V+ +N G +AL A + W+ I
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM-INH 228
Query: 132 LLISRGAK 139
L +R AK
Sbjct: 229 LQEARQAK 236
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 52/98 (53%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
+A S G+ V LL +GAD+N N G TALH A + +V+ L+ GA IN D
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
G LH AS G + E LI +GA V A + G TPL
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 30/210 (14%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH A + ++V+ L V+ AN+ N D EGW P+H+AAS G + I E L+
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFL--VENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 102 SKGADVNLKNDGGRTALHYAAS------------------KGWLKIVELLISRGAK--IN 141
S+GA V N G T L A + K E ++ R A+ +N
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN 186
Query: 142 S-------KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
S K G TALH A+ G + + +LLI+ +V+ D G TPL A +E
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 195 VALLLIRHGADVDVEDKEGYTVLGRASNDF 224
+L+ + D++ +K G T A D
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 28/197 (14%)
Query: 53 ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
A+C + E+L ++ A++ N + +G +H A NV +V+ L+ GA++N ++
Sbjct: 46 AACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI-EEGA 171
G LH AAS G+L I E LIS+GA + + + G T L L + + +G
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164
Query: 172 EVDATD--------------------------KAGQTPLMNAVICYNKEVALLLIRHGAD 205
+++A K+G T L A EV LLI+ D
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 206 VDVEDKEGYTVLGRASN 222
V+++D +G+T L A++
Sbjct: 225 VNIKDYDGWTPLHAAAH 241
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N+ +T LH+A PE+ E LL + D G P+H A G + V +L
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 94
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
+L N G T LH A+ G+L IVELL+S GA +N+++ G TALH
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
N L LL++ GA+V+ G +P
Sbjct: 155 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 43 DDDRTLLHVAASCGHPE---VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
+D + LH+A H E +E++ V +N + P+H A I E
Sbjct: 3 EDGDSFLHLAII--HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK------INSKDKVGCTALHR 153
LL G D L++ G T LH A +G L V +L + + + G T LH
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 120
Query: 154 GASTGNSALCELLIEEGAEVDATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKE 212
+ G + ELL+ GA+V+A + G+T L AV N ++ LL++ GADV+ +
Sbjct: 121 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 180
Query: 213 GYT 215
GY+
Sbjct: 181 GYS 183
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 171 AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
A ++ + QTPL AVI E+A L+ G D ++ D G T L A
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 82
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N+ +T LH+A PE+ E LL + D G P+H A G + V +L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 97
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
+L N G T LH A+ G+L IVELL+S GA +N+++ G TALH
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
N L LL++ GA+V+ G +P
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 43 DDDRTLLHVAASCGHPE---VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
+D + LH+A H E +E++ V +N + P+H A I E
Sbjct: 6 EDGDSFLHLAII--HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK------INSKDKVGCTALHR 153
LL G D L++ G T LH A +G L V +L + + + G T LH
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 154 GASTGNSALCELLIEEGAEVDATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKE 212
+ G + ELL+ GA+V+A + G+T L AV N ++ LL++ GADV+ +
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 213 GYT 215
GY+
Sbjct: 184 GYS 186
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 171 AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRA 220
A ++ + QTPL AVI E+A L+ G D ++ D G T L A
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
LL A +V EIL ++ V+ VD EG P++ A ++ I + L+ +GAD+
Sbjct: 9 LLEAANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELL 166
NL+N + YA ++G +I+ ++ +N ++ G AL A G+ +LL
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 167 IEEGAE-VDATDKAGQTPLMNAVICYN-----KEVALLLIRHGADVDVEDKEGYTVLGRA 220
+E+G E +D + G T L+ AV +++ LL+ +GAD ++D G T + A
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Query: 221 S 221
+
Sbjct: 186 N 186
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI--GNVT---IVEMLLSKGAD 106
AA GH + V++LL ++ ++ ++ G+ + A + GN IV++L+ GAD
Sbjct: 113 AAEKGHIDNVKLLL--EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
++K++ GRTA+ YA KG+ +I ++L
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLK 110
A + G E++ +L + +N + G + AA G++ V++LL G D++ +
Sbjct: 79 AGAQGRTEILAYMLK--HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 111 NDGGRTALHYA-----ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
ND G TAL A ++ + IV+LL+ GA + KD G TA+ G + + ++
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 166 LIE 168
L +
Sbjct: 197 LAQ 199
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 6/186 (3%)
Query: 42 NDDDRTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D T LH+A G+ P V ++ + ++ + P+H A ++V +L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK----INSKDKVGCTALHRGAS 156
++ GA + G+TA H A + L+ A + +++ G TALH +
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 157 TGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYT 215
T +LL+E GA++DA D K+G++PL++AV + + LL++HGA+V+ + G +
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185
Query: 216 VLGRAS 221
L AS
Sbjct: 186 ALHSAS 191
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
+T H+A P + LL + + A + +G +H A + V++LL +G
Sbjct: 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 105 ADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
AD++ + GR+ L +A L +V+LL+ GA +N++ G +ALH + G L
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV 199
Query: 164 ELLIEEGAEVDATDKAGQTPLMNA 187
L+ GA+ + TPLM A
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVA 223
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
+V++LL ANV NA G + +HSA+ G + +V L+ GAD +LKN T L
Sbjct: 165 MVQLLL--QHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Query: 120 YAASKGWLKIVE 131
A S+ + I+
Sbjct: 222 VARSRRVIDILR 233
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 144 DKVGCTALHRGASTGN----SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
D+ G T LH GN L L + G E+D + QTPL AVI V LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 200 IRHGADVDVEDKEGYTVLGRASNDFRPILIDA 231
+ GA D+ G T A P + A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 148 CTALHRGASTGNSALCELL 166
TA GN L E+L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN ++
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+KDK G T LH A G+ + E+L++ GA+V+A DK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 181 QTPLMNAVICYNKEVALLLIR 201
+T ++ N+++A +L +
Sbjct: 69 KTAFDISIDNGNEDLAEILQK 89
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
L A G +L+ GA+V+A DK G TPL A + E+ +L++ GADV+ +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 211 KEGYTVL 217
K G T
Sbjct: 66 KFGKTAF 72
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D+ G + GN + E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%)
Query: 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
+ G +H A+ G++ VE LL G+D N+K+ G T LH A + G LK+VELL+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
A +N+ + LH A G+ + +LL+ GA +A + G P+
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N TLLH+A+ G VE LL NV D GW P+H A + G++ +VE+LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVELLL 63
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
A VN + LH AA G + IV+LL+S GA N+ + G
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
N G T LH A+ KG + VE L+ G+ N KD G T LH + G+ + ELL++
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
A V+ T +PL +A + ++ LL+ +GA
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH A + GH +VVE+LL + +VN + +P+H AA G+V IV++LLS GA
Sbjct: 45 TPLHEACNHGHLKVVELLL---QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 107 VNLKNDGGRTALHYA 121
N N G + Y
Sbjct: 102 RNAVNIFGLRPVDYT 116
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G T LH + G+ E L++ G++ + D AG TPL A + +V LL++H A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 207 DV 208
+
Sbjct: 70 NT 71
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R+ +RT L VA G ++ L+ E+ + + D EG + A + I E L
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
LSKG++VN K+ G+T L ++ G+ ++ L+ GA +N ++ G T L + G S
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEV 195
+ + L+E GA++ A D G T +A I +EV
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
N D P+ A +G ++ L+ + K+ G TAL +A L I E L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
S+G+ +N+KD G T L G S + L+E GA V+ + G+TPL+ A E
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 195 VALLLIRHGADVDVEDKEGYT 215
+ L+ GAD+ D G T
Sbjct: 149 IVKKLLELGADISARDLTGLT 169
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
N ++ RT L A G ++ L+ K+ KD G TAL + E L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPI 227
+G+ V+ D +G+TPLM ++I E++ L+ HGA+V+ + EG T L AS R
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 228 LIDAAKAMLE 237
++ K +LE
Sbjct: 149 IV---KKLLE 155
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN D G P+ + G + LL GA+VN +N G T L A+ G +IV+ L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
+ GA I+++D G TA G + ++ E
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D + LH A GH V+ILL + VN V + P+ +A G+ V +LL
Sbjct: 91 DHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GA V ++D + +H AA +G ++ V LI+ G I+ K T L+ A
Sbjct: 148 GASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206
Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
+ L+E GA+V+ K +PL V ++E+A LL+ GAD ++ EG
Sbjct: 207 KKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
W+P+H AA G+ + L+S+G VN+ + LH A G L V++L+ GA++N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDA-TDKAGQTPLMNAVICYNKEVALLLI 200
T L +G+ LL++ GA V +D A +P+ A + E LI
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLI 177
Query: 201 RHGADVD 207
+G ++D
Sbjct: 178 AYGGNID 184
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
+ +H AA G + LIS+G +N + LH G+ + ++L++ GA+V+
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE 209
TPL NA + + + LL++HGA V E
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 59 EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
+V+ LL+ + A + +D+ G +H AA + LL GAD N +++ GRT L
Sbjct: 31 QVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 88
Query: 119 HYAASKGWLKIVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
H A + + + ++L+ +R +N++ G T L A + E LI A+++A D
Sbjct: 89 HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 148
Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
+G+T L A N E +L+ H A+ D +D + T L A+ R +A+KA+L+
Sbjct: 149 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA---REGSYEASKALLD 205
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
N+ D G P+H+A + + + ++LL ++ ++N + G T L AA +VE L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
I+ A IN+ D G TALH A+ N+ +L+ A DA D +TPL A +
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 197
Query: 194 EVALLLIRHGADVDVED 210
E + L+ + A+ ++ D
Sbjct: 198 EASKALLDNFANREITD 214
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A + V +ILL A +NA +G P+ AA + +VE L++ A
Sbjct: 85 RTPLHAAVAADAMGVFQILLR--NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 142
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
D+N ++ G+TALH+AA+ + V +L+ A +++D T L A G+ +
Sbjct: 143 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 202
Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRH 202
L++ A + TD + P A + ++ LL H
Sbjct: 203 LLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 239
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 72 NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
N+VN DE G+ P+ A++ G + V LL GAD ++ +AL A++ G+ IV
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAVIC 190
LL+ R IN D G T L A GN C E L+ GA++ +G TP+ AV
Sbjct: 87 LLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 191 YNKEVALLLIRH 202
++V ++ H
Sbjct: 146 GYRKVQQVIENH 157
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 85 IHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
IH A+ G + ++ L KG + VN ++ G T L +A++ G ++ V L+ GA +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
K +AL ++ G + + LL+E +++ D G TPL+ AV + + L+ G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 204 ADVDVEDKEGYTVL 217
AD+ E GYT +
Sbjct: 126 ADLTTEADSGYTPM 139
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 72 NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
N+VN DE G+ P+ A++ G + V LL GAD ++ +AL A++ G+ IV
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAVIC 190
LL+ R IN D G T L A GN C E L+ GA++ +G TP+ AV
Sbjct: 87 LLLERDVDINIYDWNGGTPLLY-AVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 191 YNKEVALLLIRH 202
++V ++ H
Sbjct: 146 GYRKVQQVIENH 157
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 85 IHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
IH A+ G + ++ L KG + VN ++ G T L +A++ G ++ V L+ GA +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHG 203
K +AL ++ G + + LL+E +++ D G TPL+ AV + + L+ G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 204 ADVDVEDKEGYTVL 217
AD+ E GYT +
Sbjct: 126 ADLTTEADSGYTPM 139
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G +V+ ++ + D +L ND G TALH A G +IV+ L+ G +N+ D G T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
H AS N +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
ND+ T LH A GH E+V+ L+ + VNA D +GW P+H AAS NV + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
GA V
Sbjct: 124 ESGAAV 129
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 101 LSKGADVNLKNDGGRTALHYAASK-------------GWLKIVELLISRGAKINSKDKVG 147
L G NL+ G H K G +V+ +I + + G
Sbjct: 11 LPPGKRTNLRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
TALH G++ + + L++ G V+A D G TPL A C N +V L+ GA V
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
V I+ VD+ + ++EG +H+A G+ IV+ L+ G +VN + G T LH
Sbjct: 53 VQRIIYEVDDPS----LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 120 YAASKGWLKIVELLISRGAKI 140
AAS +++ + L+ GA +
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
G L + +I E + + G T L NAV + E+ L++ G +V+ D +G+T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G +V+ ++ + D +L ND G TALH A G +IV+ L+ G +N+ D G T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
H AS N +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
ND+ T LH A GH E+V+ L+ + VNA D +GW P+H AAS NV + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
GA V
Sbjct: 124 ESGAAV 129
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G TALH G++ + + L++ G V+A D G TPL A C N +V L+ GA V
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
V I+ VD+ + ++EG +H+A G+ IV+ L+ G +VN + G T LH
Sbjct: 53 VQRIIYEVDDPS----LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 120 YAASKGWLKIVELLISRGAKI 140
AAS +++ + L+ GA +
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
G L + +I E + + G T L NAV + E+ L++ G +V+ D +G+T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D + LH A GH V+ILL + VN V + P+ +A G+ V +LL
Sbjct: 35 DHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GA V ++D + +H AA +G ++ V LI+ G I+ K T L+ A
Sbjct: 92 GASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 150
Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
+ L+E GA+V+ K +PL ++E+A LL+ GAD ++ EG
Sbjct: 151 KKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
W+P+H AA G+ + L+S+G VN+ + LH A G L V++L+ GA++N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDA-TDKAGQTPLMNAVICYNKEVALLLI 200
T L +G+ LL++ GA V +D A +P+ A + E LI
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLI 121
Query: 201 RHGADVD 207
+G ++D
Sbjct: 122 AYGGNID 128
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
+ +H AA G + LIS+G +N + LH G+ + ++L++ GA+V+
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 176 TDKAGQTPLMNAVICYNKEVALLLIRHGADVDVE 209
TPL NA + + + LL++HGA V E
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADV K+ G T LH AA G L++V+LL+ GA +N++DK G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 148 CTALHRGASTGNSALCELL 166
TA GN L E+L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA + +KDK G T LH A G+ + +LL+E GA+V+A DK G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 181 QTPLMNAVICYNKEVALLL 199
+T ++ N+++A +L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ A+V A D+ G P+H AA G++ +V++LL GADVN ++
Sbjct: 13 AARAGQDDEVRILMA--NGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A G +L+ GA+V A DK G TPL A + EV LL+ GADV+ +DK G
Sbjct: 14 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGK 73
Query: 215 TVL 217
T
Sbjct: 74 TAF 76
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH EVV++LL E+ VNA D+ G + GN + E+L
Sbjct: 41 TPLHLAARNGHLEVVKLLL---EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA+ + + LL AN+ D G P+H+A S + +
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
N +L++ GA D + +TPL A + E A +L+ H A+ D+ D
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA+ + LL AD N++++ GRT LH A S
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L A
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVL 217
N + A++L+++GA+ D+++ T L
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPL 194
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 91 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 209 LLDHFANRDITDHMDRLP 226
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G++ V+ ++KG DVN +GGR LHYAA G L+I+E L+ +GA IN+ DK T L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
G+ + +LL+ +GA+ G T L
Sbjct: 73 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN E G P+H AA G + I+E LL KGAD+N + T L A +G + V+LL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+S+GA K G TAL +T N A+ LL
Sbjct: 88 LSKGADKTVKGPDGLTALE---ATDNQAIKALL 117
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LH AA CG E++E LL +NA D+ P+ SA G+V+ V++LLSKGA
Sbjct: 36 RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 106 DVNLKNDGGRTAL 118
D +K G TAL
Sbjct: 93 DKTVKGPDGLTAL 105
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
+A G L V+ +++G +N + G LH A G + E L+ +GA+++A DK
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
TPL++AV + LL+ GAD V+ +G T L N A KA+L+
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN-------QAIKALLQ 118
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL AN+ D G P+H+A S + +
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 75
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
N +L++ GA D + +TPL A + E A +L+ H A+ D+ D
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L A
Sbjct: 73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 132
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVL 217
N + A++L+++GA+ D+++ T L
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPL 162
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 59 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 177 LLDHFANRDITDHMDRLP 194
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL AN+ D G P+H+A S + +
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
N +L++ GA D + +TPL A + E A +L+ H A+ D+ D
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L A
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVL 217
N + A++L+++GA+ D+++ T L
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPL 194
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 91 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 209 LLDHFANRDITDHMDRLP 226
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL AN+ D G P+H+A S + +
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 108
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 109 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 168
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
N +L++ GA D + +TPL A + E A +L+ H A+ D+ D
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 221
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 105
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L A
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 165
Query: 188 VICYNKEVALLLIRHGADVDVEDKEGYTVL 217
N + A++L+++GA+ D+++ T L
Sbjct: 166 AAVNNVDAAVVLLKNGANKDMQNNREETPL 195
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL + A ++A +G P+ AA + ++E L++ A
Sbjct: 92 RTPLHAAVSADAQGVFQIL--IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 149
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 209
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 210 LLDHFANRDITDHMDRLP 227
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G++ V+ ++KG DVN +GGR LHYAA G L+I+E L+ +GA IN+ DK T L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 152 HRGASTGNSALCELLIEEGAE 172
G+ + +LL+ +GA+
Sbjct: 78 LSAVYEGHVSCVKLLLSKGAD 98
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN E G P+H AA G + I+E LL KGAD+N + T L A +G + V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+S+GA K G TA +T N A+ LL
Sbjct: 93 LSKGADKTVKGPDGLTAFE---ATDNQAIKALL 122
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LH AA CG E++E LL +NA D+ P+ SA G+V+ V++LLSKGA
Sbjct: 41 RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 106 DVNLKNDGGRTAL 118
D +K G TA
Sbjct: 98 DKTVKGPDGLTAF 110
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
+A G L V+ +++G +N + G LH A G + E L+ +GA+++A DK
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 180 GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPILIDAAKAMLE 237
TPL++AV + LL+ GAD V+ +G T N A KA+L+
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN-------QAIKALLQ 123
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 7/173 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL A + D G P+H+A S + +
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ---DNMGRTPLHAAVSADAQGVFQ 72
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+LL ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV 132
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
N +L++ GA D + +TPL A + E A +L+ H A+ D+ D
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 185
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS---KG 125
+ A++ N D G +H AA + LL AD ++++ GRT LH A S +G
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQG 69
Query: 126 WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLM 185
+I LL +R ++++ G T L A + E LI A+V+A D G++ L
Sbjct: 70 VFQI--LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 127
Query: 186 NAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
A N + A++L+++GA+ D+++ + T L
Sbjct: 128 WAAAVNNVDAAVVLLKNGANKDMQNNKEETPL 159
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +ILL A ++A +G P+ AA + ++E L++ A
Sbjct: 56 RTPLHAAVSADAQGVFQILLR--NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHA 113
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKV 173
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 174 LLDHFANRDITDHMDRLP 191
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G + +V+ + + D + N+ G TALH A IV+ LI+ GA +NS D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDAT 176
T LH AS ++ +C L++ GA + AT
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFAT 116
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G L++V+ + + ++ G TALH N ++ + LI GA V++ D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 181 QTPLMNAVICYNKEVALLLIRHGADV 206
TPL A C + + + L++HGA +
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAI 113
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 61 VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
+E++ + N + +EEG +H+A N +IV+ L++ GA+VN + G T LH
Sbjct: 34 LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC 93
Query: 121 AASKGWLKIVELLISRGAKI 140
AAS I L+ GA I
Sbjct: 94 AASCNDTVICMALVQHGAAI 113
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
A TG + + ++E + ++ G T L NA+ N + LI GA+V+ D G+
Sbjct: 29 ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW 88
Query: 215 TVL 217
T L
Sbjct: 89 TPL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADV K+ G T LH AA G L++V+LL+ GA + ++DK G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 148 CTALHRGASTGNSALCELL 166
TA GN L E+L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA + +KDK G T LH A G+ + +LL+E GA+V A DK G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 181 QTPLMNAVICYNKEVALLL 199
+T ++ N+++A +L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + V A D+ G P+H AA G++ +V++LL GADV ++
Sbjct: 31 AARAGQDDEVRILMA---NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
L+ RG+ + S +G L A G +L+ GA+V A DK G TPL A +
Sbjct: 13 LVPRGSHMGSD--LGKKLL-EAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGH 69
Query: 193 KEVALLLIRHGADVDVEDKEGYTVL 217
EV LL+ GADV +DK G T
Sbjct: 70 LEVVKLLLEAGADVXAQDKFGKTAF 94
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH EVV++LL E+ V A D+ G + GN + E+L
Sbjct: 59 TPLHLAARNGHLEVVKLLL---EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINS 142
P+H AA GN++ + L VN + G TAL++A G IVE L ++ ++N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
++K+G TALH A G + + +LL+ +GA D
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVEL 132
VN +D+ G ++ A G+ IVE L ++ ++N +N G TALH AA KG+ IV+L
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 133 LISRGAKINSKD 144
L+++GA+ + ++
Sbjct: 159 LLAKGARTDLRN 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T L+ A GH ++VE L + N+ +N ++ G +H+AA G IV++LL+KGA
Sbjct: 108 TALYWACHGGHKDIVEXLFT---QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 106 DVNLKN 111
+L+N
Sbjct: 165 RTDLRN 170
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
+ KD+ G +H A G + L+E A+V+ D G PL A + V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
L++H A
Sbjct: 122 LVKHTA 127
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G L+ + L+ +N+++ G TAL GN + L+ GA D D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
+ G + +A + L+ ADV++ED EG
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEG 103
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
+ KD+ G +H A G + L+E A+V+ D G PL A + V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
L++H A
Sbjct: 122 LVKHTA 127
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G L+ + L+ +N+++ G TAL GN + L+ GA D D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
+ G + +A + L+ + ADV++ED EG
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEG 103
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
+ KD+ G +H A G + L+E A+V+ D G PL A + V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
L++H A
Sbjct: 122 LVKHTA 127
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA++G L+ + L+ +N+++ G TAL GN + L+ GA D D+ G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASND 223
+ +A + L+ ADV++ED EG L A+ +
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
+ KD+ G +H A G + L+E A+V+ D G PL A + V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
L++H A
Sbjct: 122 LVKHTA 127
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA++G L+ + L+ +N+++ G TAL GN + L+ GA D D+ G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 181 QTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
+ +A + L+ ADV++ED EG
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG 103
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ I LL +GA N+++ G + +H AA G+L +++L+ GA +N D G
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G++A+ L E +++ D G TPL
Sbjct: 111 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL 143
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
N D G +P+H AA G + +++L+ GADVN+ + G +H A +G +V L
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ + ++ +D G T L G L ++L
Sbjct: 128 AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL G I L+ +GA N +D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G + +H A TG ++L+E GA+V+ D G P+ AV + V L +D+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 132
Query: 207 DVEDKEGYT----VLGRASNDFRPIL 228
D G T L R + D IL
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ I LL +GA N+++ G + +H AA G+L +++L+ GA +N D G
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G++A+ L E +++ D G TPL
Sbjct: 105 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL 137
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
N D G +P+H AA G + +++L+ GADVN+ + G +H A +G +V L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ + ++ +D G T L G L ++L
Sbjct: 122 AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL G I L+ +GA N +D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G + +H A TG ++L+E GA+V+ D G P+ AV + V L +D+
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 126
Query: 207 DVEDKEGYT----VLGRASNDFRPIL 228
D G T L R + D IL
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ + LL +GA N+++ G + +H AA G+L +++L+ GA +N+ D G
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G+S++ L E +++ D +G TPL
Sbjct: 111 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL 143
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 56 GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
G P V LL S NV +A G +P+H AA G + +++L+ GADVN + G
Sbjct: 52 GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 108
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+H A +G +V L + ++ +D G T L G L ++L
Sbjct: 109 LPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL +ELL +GA N +D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G + +H A TG ++L+E GA+V+A D G P+ A+ + V L +D+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 207 DVEDKEGYTVL 217
D G T L
Sbjct: 133 HHRDASGLTPL 143
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ + LL +GA N+++ G + +H AA G+L +++L+ GA +N+ D G
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G+S++ L E +++ D +G TPL
Sbjct: 113 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL 145
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 56 GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
G P V LL S NV +A G +P+H AA G + +++L+ GADVN + G
Sbjct: 54 GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 110
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+H A +G +V L + ++ +D G T L G L ++L
Sbjct: 111 LPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL +ELL +GA N +D
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 75
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADV 206
G + +H A TG ++L+E GA+V+A D G P+ A+ + V L +D+
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 207 DVEDKEGYTVL 217
D G T L
Sbjct: 135 HHRDASGLTPL 145
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 97/234 (41%), Gaps = 57/234 (24%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANV------VNAVDEEGWAPIHSAASIGNVTIVE 98
+RT+LH AS E E L+ V E+ VNA D + P+ A +V
Sbjct: 125 NRTVLHWIASNSSAEKSEDLI-VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 99 MLLSKGADVNLKNDGGRTALHYAAS----------------KG-----------WLKIV- 130
L GAD + N R+ALH AA+ KG L IV
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 131 -----------ELLISRGAKI--------NSKDKVGCTALHRGASTGNSALCELLI-EEG 170
+LL+ +GAK+ +S+ G TALH A N + + L+ E+G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 171 AEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTV--LGRASN 222
+ D D+ G+TP+ A EV LI+ GA V+ D +T L +A+N
Sbjct: 304 SNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANN 357
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH AA + +V+ L V E + + DE+G PI AA G + +V L+ +GA
Sbjct: 280 RTALHYAAQVSNXPIVKYL--VGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELL 133
V + TA A + IV++
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 31/157 (19%)
Query: 72 NVVNAVDEEGWAPI--HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
N+ + E +PI H+ A+ G+ I E + + ++ + RT LH+ AS +
Sbjct: 83 NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEK 140
Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
E LI AK C A GA+V+A D TPL AV+
Sbjct: 141 SEDLIVHEAK-------ECIAA------------------GADVNAXDCDENTPLXLAVL 175
Query: 190 CYNKEVALLLIRHGADVDVEDKEGYTVLGRAS--NDF 224
+ + L + GAD + +K + L +A+ DF
Sbjct: 176 ARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDF 212
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
L+ GADVN N G T L A + L E L+ GA +N D G LH G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
++ L L ++ GA++ A D G+ PL A+ N ++ LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 155 ASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
A+ NS L CE L++ GA V+ D AG+ PL +A I + +A L ++ GAD+ D EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 214 YTVL 217
L
Sbjct: 302 RDPL 305
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GR LH+A G + L + RGA + ++D G L T N+ + LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
L+ GADVN N G T L A + L E L+ GA +N D G LH G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
++ L L ++ GA++ A D G+ PL A+ N ++ LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 155 ASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
A+ NS L CE L++ GA V+ D AG+ PL +A I + +A L ++ GAD+ D EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 214 YTVL 217
L
Sbjct: 302 RDPL 305
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GR LH+A G + L + RGA + ++D G L T N+ + LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
L+ GADVN N G T L A + L E L+ GA +N D G LH G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
++ L L ++ GA++ A D G+ PL A+ N ++ LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 155 ASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
A+ NS L CE L++ GA V+ D AG+ PL +A I + +A L ++ GAD+ D EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 214 YTVL 217
L
Sbjct: 302 RDPL 305
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GR LH+A G + L + RGA + ++D G L T N+ + LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 56 GHPEVVEILLSVDESAN------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVN 108
HPE+V L + + VVN D G +H + S N +V+ LL G V+
Sbjct: 80 AHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD 139
Query: 109 LKNDGGR-----TALHYAASKGWLKIVELLISRGAKINSK-DKVGCTALHRGASTGNSAL 162
+N G TAL ++ ++ V L + R IN+K + G TAL S G +
Sbjct: 140 KQNRAGYSPIMLTALATLKTQDDIETV-LQLFRLGNINAKASQAGQTALMLAVSHGRVDV 198
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEVA-LLLIRHGADVDVEDKEGYTVL 217
+ L+ A+V+ D G T LM A +KE+A LLL D+ + D++G T L
Sbjct: 199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL 254
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH--SAASIGNVTIVEMLLS-- 102
T LH + S + VV+ LL D V+ + G++PI + A++ +E +L
Sbjct: 113 TALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 103 KGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
+ ++N K + G+TAL A S G + +V+ L++ A +N +D G TAL G+
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE 230
Query: 162 LCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEVALLL 199
+ LL+ ++ TD+ G T LM A+ E+A +L
Sbjct: 231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++DD T L A GH E+ +LL+V ++ D +G + A G I ML
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASML 269
Query: 101 LSK 103
S+
Sbjct: 270 YSR 272
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
P +AA + + LL DV+ ++ GRTAL + A G K V LL GA ++ +
Sbjct: 48 PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 144 D-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
D + G TALH A + E L+E GA+++ D+ G T L
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
V+AVDE G + A +G+ V +L GAD++ ++ GG TALH AA ++VE
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 133 LISRGAKINSKDKVGCTALH 152
L+ GA I +D+ G TAL
Sbjct: 130 LVELGADIEVEDERGLTALE 149
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEVALL 198
+++ D+ G TAL A G+ LL E GA++D D + G T L A EV
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 199 LIRHGADVDVEDKEGYTVL 217
L+ GAD++VED+ G T L
Sbjct: 130 LVELGADIEVEDERGLTAL 148
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED-KEGYTVL 217
AL +LL E +VDA D+ G+T L+ + + LL GAD+D D + G T L
Sbjct: 58 EQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115
Query: 218 GRASNDFRPILIDA 231
A+ RP +++A
Sbjct: 116 HMAAGYVRPEVVEA 129
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+++ RT L A G + V +L + A++ + G +H AA +VE L+
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLL--AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 102 SKGADVNLKNDGGRTALHYA 121
GAD+ ++++ G TAL A
Sbjct: 132 ELGADIEVEDERGLTALELA 151
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIE 168
+N G T LH A ++V LL GA +N + G T LH +++ ELL++
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
GA+ A G+TPL +A++ N +A LL HGA
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 88/235 (37%), Gaps = 48/235 (20%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D T LH+A H ++ LL ++ ++ G +H AA +G + VE L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYAAS-KGWLKIVELLISRGA---------------------- 138
+ GA V + GG TALH A + LL R +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 139 ------------------------KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
++ +++ G T LH ++ + LL + GA+++
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 175 ATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPIL 228
+ G+TPL AV V LL++ GAD G T LG A PIL
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
+ A + +G P+H A + +V +L GAD+N GRT LH A ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
L+ GA ++ G T L N L LL GA
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LHVA E+V +L D A++ G P+H A +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
GAD + GGRT L A + + LL + GA
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 73 VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
V V E+G +H A + ++ LL A ++L+ND G+TALH AA G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 130 VELLISRGAKINSKDKVGCTALH 152
VE L + GA + ++ G TALH
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALH 83
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIE 168
+N G T LH A ++V LL GA +N + G T LH +++ ELL++
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 169 EGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
GA+ A G+TPL +A++ N +A LL HGA
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 88/235 (37%), Gaps = 48/235 (20%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D T LH+A H ++ LL ++ ++ G +H AA +G + VE L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 102 SKGADVNLKNDGGRTALHYAAS-KGWLKIVELLISRGA---------------------- 138
+ GA V + GG TALH A + LL R +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 139 ------------------------KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
++ +++ G T LH ++ + LL + GA+++
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 175 ATDKA-GQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPIL 228
+ G+TPL AV V LL++ GAD G T LG A PIL
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
+ A + +G P+H A + +V +L GAD+N GRT LH A ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
L+ GA ++ G T L N L LL GA
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LHVA E+V +L D A++ G P+H A +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
GAD + GGRT L A + + LL + GA
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 73 VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
V V E+G +H A + ++ LL A ++L+ND G+TALH AA G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 130 VELLISRGAKINSKDKVGCTALH 152
VE L + GA + ++ G TALH
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALH 83
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
P +AA + + LL DV+ ++ GRTAL + A G K V LL GA ++ +
Sbjct: 47 PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 144 D-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
D + G TALH A + E L+E GA+++ D+ G T L
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
V+AVDE G + A +G+ V +L GAD++ ++ GG TALH AA ++VE
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 133 LISRGAKINSKDKVGCTALH 152
L+ GA I +D+ G TAL
Sbjct: 129 LVELGADIEVEDERGLTALE 148
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKEVALL 198
+++ D+ G TAL A G+ LL E GA++D D + G T L A EV
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 199 LIRHGADVDVEDKEGYTVL 217
L+ GAD++VED+ G T L
Sbjct: 129 LVELGADIEVEDERGLTAL 147
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED-KEGYTVL 217
AL +LL E +VDA D+ G+T L+ + + LL GAD+D D + G T L
Sbjct: 57 EQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 114
Query: 218 GRASNDFRPILIDA 231
A+ RP +++A
Sbjct: 115 HMAAGYVRPEVVEA 128
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+++ RT L A G + V +L + A++ + G +H AA +VE L+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLL--AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 102 SKGADVNLKNDGGRTALHYA 121
GAD+ ++++ G TAL A
Sbjct: 131 ELGADIEVEDERGLTALELA 150
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 82 W-APIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
W +P+ AA +V + LL +G +V+ + G TALH AA L+ +L+ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 140 I-----NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA-------------GQ 181
+ S+ G TALH N L L+ GA V A G+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 182 TPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 217
PL A ++E+ LLI HGAD+ +D G TVL
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE--EGWAPIHSAASIGNVTIVE 98
R T LH+AA + E +L+ E EG +H A NV +V
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 99 MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
LL++GA V+ + G G L +AA G +IV LLI GA I ++D
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 146 VGCTALH 152
+G T LH
Sbjct: 153 LGNTVLH 159
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
+GN I LL +GA+ +LK+ G +H AA G+L ++ L+ A +N +D G
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 151 LHRGASTGNSALCELLIEEGA-EVDATDKAGQTPLMNAVICYNKEVALLLIRHGA 204
LH A G+ + E L++ A V + G T A + EV L+ +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 45 DRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
DRT ++H AA G + ++ LL VN D EG P+H AA G++ +VE L+
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 102 SKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
A +V +N G TA A G ++V L+ + GA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
+ KD+ G +H A G + L+E A+V+ D G PL A + V
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 199 LIRHGA 204
L++H A
Sbjct: 122 LVKHTA 127
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G L+ + L+ +N+++ G TAL GN + L+ GA D D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 178 KAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
+ G + +A + L+ ADV++ED EG
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG 103
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
E P+H AA++ + IV++LL G D + +D G TAL+YA G + V+L + + +
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 140 INSKDKVGC-TALHRGASTGNSALCELLIEE 169
+ K G T+ + + ++ + E
Sbjct: 121 LXFYGKTGWKTSFYHAVXLNDVSIVSYFLSE 151
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
D G + + A + NV +V LL+ GA NL + LH AA+ KIV++L+ G
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSG 85
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG-QTPLMNAV 188
+ D G TAL+ +GN +L +++ + K G +T +AV
Sbjct: 86 LDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAV 137
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
G +A +YA + +++V L++ GA N + LH+ A+ ++ + ++L+ G +
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD 88
Query: 174 DATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGY 214
D G T L AV N + L ++ + K G+
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGW 129
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN----VTIVEMLLS 102
T LH+A G + + L SV E ++ + G PIH A V +VE
Sbjct: 55 TALHLACKFGCVDTAKYLASVGEVHSLWH-----GQKPIHLAVXANKTDLVVALVEGAKE 109
Query: 103 KGA------------DVN-----LKNDGGRTALHYAASKG--WLKIVELLISRGAKINSK 143
+G +VN +K+ G+TALH+ G +L+ +++L+ GA +K
Sbjct: 110 RGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAK 169
Query: 144 DKVGCTALHRGASTGNSALCELLI-----EEGAEVDATDKAGQTPLMNAVICYNKEVALL 198
DK T L R N +L + +D +K G + L A++ ++VA
Sbjct: 170 DKADETPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXR 229
Query: 199 LIRHGADVDVEDKE 212
+ G DV+ ED E
Sbjct: 230 FVEXGIDVNXEDNE 243
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 28/176 (15%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D++ +HVAA G + V L+ S + N G +H A G V + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYLA 73
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLIS----RGAKINS--------------- 142
S G +L + G+ +H A +V L+ RG S
Sbjct: 74 SVGEVHSLWH--GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGS 131
Query: 143 --KDKVGCTALHRGASTGNSAL--CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
K G TALH G L ++L++ GA A DKA +TPL A N+E
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNRE 187
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVE 131
NA E + + +AA +G L KG + LK++ L + KI
Sbjct: 2 NAXSE--YRTVSAAAXLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISX 59
Query: 132 LLISRGAKINSKDKVGCT---ALHRGAS---TGNSALCELLIEEGAEVDATDKAGQTPLM 185
LI++GA I S+ K G T L +G TG + LC++ +E+GA++ A K + +
Sbjct: 60 FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119
Query: 186 NAVICY----NKEVA---LLLIRHGADVDVEDKEGYTVLGRASNDFRPI 227
+ Y N+ + L+ + G + ++DK G T L +PI
Sbjct: 120 KNIFNYFVDENEXIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
L ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+ N
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVED 210
+L++ GA D + +TPL A + E A +L+ H A+ D+ D
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITD 111
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%)
Query: 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
+G P+ AA + ++E L++ ADVN +D G++ALH+AA+ + +L+ GA
Sbjct: 13 HDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 72
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
+ ++ T L A G+ ++L++ A D TD + P
Sbjct: 73 NKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 117
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 116 TALHYAAS---KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
TALH A + L IV+ L+ ++ + G TALH T N+ +LL+ A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 173 VDATDKAGQTPL 184
++ +++G+TPL
Sbjct: 231 IEIANESGETPL 242
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 149 TALH---RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 205
TALH R + + + L++ +D G T L + N E LL+R A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 206 VDVEDKEGYTVL 217
+++ ++ G T L
Sbjct: 231 IEIANESGETPL 242
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 56 GHPEVVEILLSV----DESANVVNAVDE----EGWAPIHSAASIGNVTIVEMLLSKGADV 107
G + + +LL V D VNA +G +H A N T+V +L+ GADV
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADV 127
Query: 108 N-------LKNDGGRTALHY-------AASKGWLKIVELLIS---RGAKINSKDKVGCTA 150
K GR ++ AA L IV+ L+ + A I+++D VG T
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187
Query: 151 LH 152
LH
Sbjct: 188 LH 189
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKA--------------GQTPLMNAVICYN 192
G TALH N L LL+E GA+V A G+ PL A
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 193 KEVALLLIRHG---ADVDVEDKEGYTVL 217
+ L+++ AD+ D G TVL
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVL 188
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L AA+ G E V LL E+ + NA + G PI +G+ + E+LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALL---EAGALPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPN 71
Query: 109 LKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVG 147
+ T +H AA +G+L + +L GA+++ +D G
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G ++ V L+ GA N+ + G + G++ + ELL+ GAE + D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 178 KAGQT-PLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
A T P+ +A + ++L R GA +DV D G
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 71 ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA 122
AN++NA D G ++ AA +GN++IV+ LL GAD + N G + + A
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
VDE G P+H SI N+ +V+ L+ G++
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+N++D G T L+ A GN ++ + L++ GA+ +K+G P+
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L AA+ G E V LL + N N+ G PI +G+ + E+LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSY---GRRPIQ-VMMMGSARVAELLLLHGAEPN 71
Query: 109 LKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVG 147
+ T +H AA +G+L + +L GA+++ +D G
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G ++ V L+ GA N+ + G + G++ + ELL+ GAE + D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 178 KAGQT-PLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
A T P+ +A + ++L R GA +DV D G
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 85 IHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
+H A + N + +V+ ++ G ++ K G TALHYAA ++LL+ A +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEE 169
+ ++ G TAL A + CE L+E+
Sbjct: 235 TVNEAGETALDI-ARKKHHKECEELLEQ 261
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 118 LHYA---ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
LH A A++ L +V+ +I G +++K G TALH A +LL++ A V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 175 ATDKAGQTPLMNAVICYNKEVALLL 199
++AG+T L A ++KE LL
Sbjct: 235 TVNEAGETALDIARKKHHKECEELL 259
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 85 IHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
+H A + N + +V+ ++ G ++ K G TALHYAA ++LL+ A +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEE 169
+ ++ G TAL A + CE L+E+
Sbjct: 254 TVNEAGETALDI-ARKKHHKECEELLEQ 280
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 118 LHYA---ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
LH A A++ L +V+ +I G +++K G TALH A +LL++ A V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 175 ATDKAGQTPLMNAVICYNKEVALLL 199
++AG+T L A ++KE LL
Sbjct: 254 TVNEAGETALDIARKKHHKECEELL 278
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G ++ V L+ GA N+ ++ G + G++ + ELL+ GAE + D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 178 KAGQT-PLMNAVICYNKEVALLLIRHGADVDVEDKEG 213
A T P+ +A + ++L R GA +DV D G
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG 111
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 25/124 (20%)
Query: 54 SCGHPEVVEILLSVDESA----NVVNA----VDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
S G + + ILL + E +N+ V G +H A VE+L+ KGA
Sbjct: 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117
Query: 106 DVNLKNDG--------------GRTALHYAASKGWLKIVELLISRGAK---INSKDKVGC 148
DV+ + G G L AA IV L G K + +D G
Sbjct: 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN 177
Query: 149 TALH 152
T LH
Sbjct: 178 TVLH 181
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-- 145
A GN+ E + S DV + G+TALH A + VELL+ +GA ++++ +
Sbjct: 72 AEKTGNMR--EFINSPFRDVYYR---GQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 146 ------------VGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPL 184
G L A T + L E G A++ D G T L
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
>pdb|3TB6|A Chain A, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
pdb|3TB6|B Chain B, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
Length = 298
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 172 EVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRASNDFRPI 227
+V AT + + A++CYN E+AL +I ++D++ E +++G + F I
Sbjct: 189 KVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYDDSHFAQI 244
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
EGWA +HS+A G+ + E LL K D +L
Sbjct: 106 EGWAALHSSAERGDWDVAEALLEKMDDPSL 135
>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
Length = 113
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNK--EVALLLIRHGAD-VDVEDKEGYT--VLG 218
++L+ E +V+ + L CY E + + + D VD + K+ Y VLG
Sbjct: 15 KILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLG 74
Query: 219 RASNDFRPILIDAAKAMLEG 238
+D +P+L+ ML+G
Sbjct: 75 NGVSDLKPVLLTEPSVMLQG 94
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSK------DKVGCTALHRGASTGNSALC---- 163
G +ALH A K L+ V+LL+ GA ++++ K T + G + A C
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 164 ---ELLIE---EGAEVDATDKAGQTPL 184
L+E + A + ATD G T L
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVL 181
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
A GN+ E + S D+ + G+TALH A + VELL+++GA ++++ +
Sbjct: 70 AERTGNMR--EFINSPFRDIYYR---GQTALHIAIERRCKHYVELLVAQGADVHAQAR 122
>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate.
pdb|4E5U|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate
Length = 213
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 18 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 52
>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|C Chain C, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|D Chain D, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 211
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 14 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 48
>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWO|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 220
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 23 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 57
>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWK|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 232
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 35 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 69
>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4EDH|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4ESH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With
Deoxythymidine.
pdb|4GMD|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|C Chain C, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|D Chain D, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
Length = 213
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 18 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 52
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSK------DKVGCTALHRGASTGNSALC---- 163
G +ALH A K L+ V+LL+ GA ++ + K T + G + A C
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 164 ---ELLIE---EGAEVDATDKAGQTPLMNAVI 189
L+E + A ++ATD G T L V+
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVM 194
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSK------DKVGCTALHRGASTGNSALC---- 163
G +ALH A K L+ V+LL+ GA ++ + K T + G + A C
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 164 ---ELLIE---EGAEVDATDKAGQTPLMNAVI 189
L+E + A ++ATD G T L V+
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,261,256
Number of Sequences: 62578
Number of extensions: 234011
Number of successful extensions: 1414
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 530
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)