Query 026442
Match_columns 238
No_of_seqs 187 out of 538
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:04:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02195 cellulose synthase A 100.0 1.2E-79 2.7E-84 620.9 20.4 236 3-238 157-406 (977)
2 PLN02400 cellulose synthase 100.0 3E-79 6.5E-84 622.6 20.8 236 3-238 261-510 (1085)
3 PLN02915 cellulose synthase A 100.0 7.2E-79 1.6E-83 618.2 21.6 236 3-238 192-441 (1044)
4 PLN02190 cellulose synthase-li 100.0 2.9E-78 6.3E-83 600.1 22.1 234 2-238 7-240 (756)
5 PLN02638 cellulose synthase A 100.0 1.9E-78 4.1E-83 616.5 20.4 235 3-237 254-502 (1079)
6 PLN02436 cellulose synthase A 100.0 2.1E-78 4.5E-83 615.1 20.2 236 3-238 270-519 (1094)
7 PLN02189 cellulose synthase 100.0 3.2E-78 7E-83 613.3 19.3 236 3-238 236-485 (1040)
8 PLN02893 Cellulose synthase-li 100.0 1E-76 2.2E-81 590.1 20.0 229 2-238 10-251 (734)
9 PLN02248 cellulose synthase-li 100.0 2E-76 4.3E-81 602.1 21.4 204 4-207 268-486 (1135)
10 PF03552 Cellulose_synt: Cellu 100.0 7.9E-56 1.7E-60 438.8 11.4 149 90-238 1-153 (720)
11 PRK11498 bcsA cellulose syntha 99.8 1.1E-20 2.4E-25 193.0 15.1 187 12-204 180-415 (852)
12 TIGR03030 CelA cellulose synth 99.8 2.9E-20 6.2E-25 186.8 15.0 144 13-161 52-205 (713)
13 COG1215 Glycosyltransferases, 98.9 1.3E-08 2.9E-13 94.2 9.8 87 50-143 17-104 (439)
14 PRK05454 glucosyltransferase M 98.8 4.9E-08 1.1E-12 98.9 14.4 132 16-159 40-189 (691)
15 TIGR03111 glyc2_xrt_Gpos1 puta 98.6 2.5E-07 5.3E-12 88.3 9.9 57 84-144 45-101 (439)
16 PRK14583 hmsR N-glycosyltransf 98.3 3.5E-06 7.7E-11 80.3 8.9 53 85-143 72-124 (444)
17 PRK11204 N-glycosyltransferase 98.0 3E-05 6.4E-10 72.6 9.8 54 84-143 50-103 (420)
18 TIGR03469 HonB hopene-associat 98.0 2.3E-05 5E-10 73.5 9.0 55 84-143 36-90 (384)
19 cd06421 CESA_CelA_like CESA_Ce 98.0 1.4E-05 3.1E-10 67.1 5.8 49 88-139 1-49 (234)
20 cd04191 Glucan_BSP_ModH Glucan 97.9 4E-05 8.7E-10 68.6 7.1 43 90-136 1-47 (254)
21 TIGR03472 HpnI hopanoid biosyn 97.8 0.00011 2.4E-09 68.6 10.0 53 85-143 38-90 (373)
22 cd04190 Chitin_synth_C C-termi 97.7 1.8E-05 3.9E-10 69.1 2.7 41 92-135 1-49 (244)
23 cd06427 CESA_like_2 CESA_like_ 97.7 5.7E-05 1.2E-09 65.1 5.3 52 88-143 1-52 (241)
24 cd06439 CESA_like_1 CESA_like_ 97.5 7.1E-05 1.5E-09 64.1 3.5 56 84-143 25-80 (251)
25 PRK14716 bacteriophage N4 adso 97.5 0.00053 1.1E-08 67.6 9.7 56 84-145 62-118 (504)
26 cd06437 CESA_CaSu_A2 Cellulose 97.5 0.00022 4.8E-09 60.7 5.9 52 88-144 1-52 (232)
27 PF13641 Glyco_tranf_2_3: Glyc 97.4 7.1E-05 1.5E-09 63.1 2.0 50 88-143 1-50 (228)
28 cd06438 EpsO_like EpsO protein 97.4 0.00022 4.8E-09 58.8 4.7 45 92-140 1-45 (183)
29 PRK11234 nfrB bacteriophage N4 97.3 0.00073 1.6E-08 69.3 8.0 54 84-143 59-113 (727)
30 cd04192 GT_2_like_e Subfamily 97.2 0.00051 1.1E-08 57.2 5.1 47 92-142 1-47 (229)
31 cd06435 CESA_NdvC_like NdvC_li 97.2 0.00083 1.8E-08 57.0 6.2 42 92-138 2-43 (236)
32 cd04196 GT_2_like_d Subfamily 97.2 0.00074 1.6E-08 55.6 5.3 47 91-143 1-47 (214)
33 cd02520 Glucosylceramide_synth 97.2 0.00087 1.9E-08 56.0 5.7 50 88-143 1-50 (196)
34 cd04184 GT2_RfbC_Mx_like Myxoc 97.0 0.0016 3.4E-08 53.6 5.5 50 88-142 1-50 (202)
35 cd06434 GT2_HAS Hyaluronan syn 96.8 0.0018 3.8E-08 54.7 4.6 47 89-142 1-47 (235)
36 cd02525 Succinoglycan_BP_ExoA 96.7 0.0033 7.1E-08 53.0 5.7 50 90-143 2-51 (249)
37 COG0463 WcaA Glycosyltransfera 96.7 0.0035 7.6E-08 47.4 4.9 51 87-143 2-52 (291)
38 PF00535 Glycos_transf_2: Glyc 96.5 0.0036 7.8E-08 48.5 3.9 49 91-145 1-49 (169)
39 PRK15489 nfrB bacteriophage N4 96.4 0.0085 1.8E-07 61.5 7.2 50 84-139 67-120 (703)
40 cd06423 CESA_like CESA_like is 96.2 0.007 1.5E-07 46.6 4.3 46 92-143 1-46 (180)
41 cd06433 GT_2_WfgS_like WfgS an 96.2 0.0095 2.1E-07 48.0 5.2 46 92-143 2-47 (202)
42 PTZ00260 dolichyl-phosphate be 96.2 0.029 6.3E-07 52.1 9.1 55 85-143 67-127 (333)
43 cd04186 GT_2_like_c Subfamily 96.1 0.0098 2.1E-07 46.5 4.8 47 92-144 1-47 (166)
44 PRK10018 putative glycosyl tra 95.8 0.017 3.7E-07 52.5 5.6 44 86-135 3-46 (279)
45 cd02522 GT_2_like_a GT_2_like_ 95.8 0.015 3.2E-07 48.5 4.6 48 90-143 1-48 (221)
46 cd04185 GT_2_like_b Subfamily 95.7 0.014 3.1E-07 48.2 4.4 46 92-143 1-46 (202)
47 PLN02726 dolichyl-phosphate be 95.7 0.02 4.4E-07 49.5 5.5 55 85-143 6-60 (243)
48 PRK10073 putative glycosyl tra 95.7 0.018 3.8E-07 53.3 5.4 52 86-143 4-55 (328)
49 cd04195 GT2_AmsE_like GT2_AmsE 95.7 0.024 5.2E-07 46.6 5.5 43 92-139 2-45 (201)
50 cd06436 GlcNAc-1-P_transferase 95.6 0.016 3.4E-07 48.5 4.2 44 92-142 1-44 (191)
51 cd06420 GT2_Chondriotin_Pol_N 95.5 0.028 6.1E-07 45.3 5.1 46 92-143 1-46 (182)
52 cd06913 beta3GnTL1_like Beta 1 95.4 0.023 5.1E-07 47.8 4.7 47 92-143 1-47 (219)
53 cd04179 DPM_DPG-synthase_like 95.2 0.03 6.6E-07 45.1 4.6 48 92-143 1-48 (185)
54 cd02510 pp-GalNAc-T pp-GalNAc- 95.2 0.03 6.5E-07 50.0 5.0 49 92-143 2-50 (299)
55 PRK10063 putative glycosyl tra 94.6 0.053 1.1E-06 48.1 4.7 52 88-143 1-53 (248)
56 PRK13915 putative glucosyl-3-p 94.3 0.075 1.6E-06 48.9 5.2 55 85-143 28-82 (306)
57 cd06442 DPM1_like DPM1_like re 94.0 0.084 1.8E-06 44.0 4.6 44 92-140 1-44 (224)
58 COG2943 MdoH Membrane glycosyl 93.9 1.4 3E-05 44.7 13.3 137 14-162 61-212 (736)
59 cd00761 Glyco_tranf_GTA_type G 93.7 0.15 3.3E-06 38.1 5.1 48 92-145 1-48 (156)
60 cd04188 DPG_synthase DPG_synth 93.6 0.085 1.9E-06 44.1 3.9 48 92-143 1-50 (211)
61 cd04187 DPM1_like_bac Bacteria 93.3 0.15 3.3E-06 41.4 4.8 47 92-143 1-49 (181)
62 PRK10714 undecaprenyl phosphat 91.2 0.38 8.2E-06 44.5 5.2 54 87-145 5-60 (325)
63 cd02511 Beta4Glucosyltransfera 88.0 0.83 1.8E-05 39.2 4.6 41 90-139 2-42 (229)
64 cd02514 GT13_GLCNAC-TI GT13_GL 87.1 1.1 2.4E-05 42.3 5.2 42 91-136 3-44 (334)
65 cd02526 GT2_RfbF_like RfbF is 81.1 2.2 4.8E-05 35.8 4.1 37 92-136 1-37 (237)
66 COG1216 Predicted glycosyltran 79.1 4.2 9.1E-05 36.8 5.4 51 88-144 3-53 (305)
67 KOG2977 Glycosyltransferase [G 77.6 5.2 0.00011 37.6 5.6 59 89-161 68-132 (323)
68 PF03142 Chitin_synth_2: Chiti 72.5 5.5 0.00012 40.0 4.6 43 85-130 22-65 (527)
69 COG3095 MukE Uncharacterized p 57.2 14 0.00029 32.7 3.6 29 146-174 47-76 (238)
70 PF15632 ATPgrasp_Ter: ATP-gra 56.7 22 0.00047 33.6 5.2 55 89-160 66-120 (329)
71 PF03071 GNT-I: GNT-I family; 56.5 11 0.00024 37.1 3.2 49 85-138 90-139 (434)
72 PF06853 DUF1249: Protein of u 52.8 19 0.00042 29.1 3.7 21 141-161 97-117 (120)
73 PRK11039 putative dehydrogenas 49.5 20 0.00042 30.1 3.3 20 142-161 116-135 (140)
74 PRK05256 condesin subunit E; P 49.4 29 0.00063 31.5 4.5 29 146-174 49-78 (238)
75 PF02012 BNR: BNR/Asp-box repe 45.1 13 0.00027 18.9 0.9 9 127-135 1-9 (12)
76 KOG1577 Aldo/keto reductase fa 44.0 32 0.0007 32.3 4.1 15 150-164 192-206 (300)
77 KOG2978 Dolichol-phosphate man 43.7 27 0.00057 31.4 3.3 47 90-139 5-51 (238)
78 KOG3738 Predicted polypeptide 40.7 30 0.00066 34.3 3.5 52 84-138 120-171 (559)
79 PF08861 DUF1828: Domain of un 38.7 23 0.0005 26.7 1.9 40 125-164 21-64 (90)
80 COG3151 Uncharacterized protei 36.7 46 0.001 28.1 3.5 34 117-161 107-140 (147)
81 KOG3177 Oligoketide cyclase/li 35.5 19 0.00042 32.4 1.2 41 132-172 77-117 (227)
82 PRK09121 5-methyltetrahydropte 33.6 97 0.0021 29.1 5.6 53 94-149 275-335 (339)
83 PF11720 Inhibitor_I78: Peptid 33.2 29 0.00063 24.6 1.6 20 114-133 34-53 (60)
84 PF12344 UvrB: Ultra-violet re 30.5 78 0.0017 21.6 3.2 28 137-164 10-37 (44)
85 cd06432 GT8_HUGT1_C_like The C 29.8 86 0.0019 28.0 4.4 56 91-160 2-57 (248)
86 PF10111 Glyco_tranf_2_2: Glyc 29.5 1.1E+02 0.0024 27.2 5.2 46 92-139 2-50 (281)
87 COG5227 SMT3 Ubiquitin-like pr 28.0 28 0.00061 27.6 0.9 50 122-172 23-72 (103)
88 COG4226 HicB Predicted nucleas 27.4 46 0.001 27.0 2.0 42 126-167 26-70 (111)
89 TIGR01556 rhamnosyltran L-rham 27.1 71 0.0015 27.9 3.4 31 96-134 2-32 (281)
90 PF01717 Meth_synt_2: Cobalami 26.1 1.1E+02 0.0023 28.1 4.5 42 88-135 263-304 (324)
91 PF00715 IL2: Interleukin 2 Th 25.1 57 0.0012 27.4 2.2 13 145-157 130-142 (145)
92 KOG3737 Predicted polypeptide 24.8 75 0.0016 31.6 3.3 47 84-134 151-198 (603)
93 PRK15171 lipopolysaccharide 1, 23.6 2E+02 0.0043 26.9 5.8 52 88-143 24-75 (334)
94 PRK03001 M48 family peptidase; 23.4 5.4E+02 0.012 23.2 8.5 11 85-95 80-90 (283)
95 KOG3736 Polypeptide N-acetylga 23.4 43 0.00093 34.2 1.4 51 84-137 138-188 (578)
96 PF02820 MBT: mbt repeat; Int 23.3 30 0.00066 25.1 0.3 22 150-171 50-71 (73)
97 PRK03982 heat shock protein Ht 23.3 4.1E+02 0.0089 24.1 7.7 59 59-130 50-114 (288)
98 PF00728 Glyco_hydro_20: Glyco 22.9 1E+02 0.0022 28.1 3.7 57 103-161 16-88 (351)
99 COG3605 PtsP Signal transducti 22.8 32 0.0007 35.6 0.4 39 94-135 323-361 (756)
100 PF08844 DUF1815: Domain of un 22.7 48 0.001 26.4 1.3 15 118-135 30-44 (105)
101 PRK06520 5-methyltetrahydropte 22.3 1.5E+02 0.0033 28.1 4.8 39 94-135 302-340 (368)
102 PF09623 Cas_NE0113: CRISPR-as 22.0 5.8E+02 0.013 22.9 10.2 61 92-161 4-64 (224)
103 cd06431 GT8_LARGE_C LARGE cata 21.3 1.9E+02 0.0041 26.4 5.1 44 93-141 5-48 (280)
104 cd04194 GT8_A4GalT_like A4GalT 20.8 1.3E+02 0.0028 26.0 3.8 49 91-143 2-50 (248)
105 smart00189 IL2 Interleukin-2 f 20.7 68 0.0015 27.1 1.8 13 145-157 136-148 (154)
106 smart00674 CENPB Putative DNA- 20.6 88 0.0019 21.6 2.2 13 149-161 50-63 (66)
No 1
>PLN02195 cellulose synthase A
Probab=100.00 E-value=1.2e-79 Score=620.92 Aligned_cols=236 Identities=37% Similarity=0.648 Sum_probs=219.1
Q ss_pred CCCceeeEecCCch---hHHHHHHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (238)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~~~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~ 78 (238)
.+||++++++++++ ||+++++++++|+++++||+++..+.+. .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 157 ~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 236 (977)
T PLN02195 157 YEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYID 236 (977)
T ss_pred cCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHH
Confidence 36999999999984 9999999999999999999999888774 8999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHH
Q 026442 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (238)
Q Consensus 79 ~L~~~~------~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wv 152 (238)
||++|- ++||+|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.|||+||++||
T Consensus 237 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 316 (977)
T PLN02195 237 RLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWV 316 (977)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCCC----CCccccCCCCCCC
Q 026442 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLT----GELEVFFNTECQN 228 (238)
Q Consensus 153 pFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~~----g~f~~w~~~~~~~ 228 (238)
|||||||||||||++||+++.+..++...++|++||++||+||||||+|||+++++....+.+ ++|++|++++++|
T Consensus 317 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~d 396 (977)
T PLN02195 317 PFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRD 396 (977)
T ss_pred ccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCC
Confidence 999999999999999999987755566678999999999999999999999998764443322 5589999999999
Q ss_pred CcccceeccC
Q 026442 229 HPTIIKVITS 238 (238)
Q Consensus 229 H~~ivqvi~~ 238 (238)
||+|||||+.
T Consensus 397 Hp~IIqVll~ 406 (977)
T PLN02195 397 HPGMIQVFLG 406 (977)
T ss_pred Ccchhhhhcc
Confidence 9999999973
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=3e-79 Score=622.57 Aligned_cols=236 Identities=37% Similarity=0.652 Sum_probs=219.8
Q ss_pred CCCceeeEecCCc---hhHHHHHHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442 3 SLPLYEKVIAKNT---THRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (238)
Q Consensus 3 ~~pL~~~~~~~~~---~~R~~~~~~~~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~ 78 (238)
.+||+++++++++ .||+++++++++|+++|+||+++..+.++ .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 261 ~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 340 (1085)
T PLN02400 261 RLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLD 340 (1085)
T ss_pred cCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHH
Confidence 4799999999998 49999999999999999999999888764 6999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHH
Q 026442 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (238)
Q Consensus 79 ~L~~~~------~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wv 152 (238)
||++|- ++||+|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.|||+||++||
T Consensus 341 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~Wv 420 (1085)
T PLN02400 341 RLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWV 420 (1085)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCCCC----CccccCCCCCCC
Q 026442 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTG----ELEVFFNTECQN 228 (238)
Q Consensus 153 pFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~~g----~f~~w~~~~~~~ 228 (238)
||||||+||||||++||+++.+..++...++|++||++||+||||||+|||+++++....+.+| +|++|++++++|
T Consensus 421 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~d 500 (1085)
T PLN02400 421 PFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRD 500 (1085)
T ss_pred chhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCC
Confidence 9999999999999999999877566667789999999999999999999999986555555444 599999999999
Q ss_pred CcccceeccC
Q 026442 229 HPTIIKVITS 238 (238)
Q Consensus 229 H~~ivqvi~~ 238 (238)
||+|||||++
T Consensus 501 Hp~iIqVll~ 510 (1085)
T PLN02400 501 HPGMIQVFLG 510 (1085)
T ss_pred Cchhhhhhhc
Confidence 9999999974
No 3
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=7.2e-79 Score=618.20 Aligned_cols=236 Identities=39% Similarity=0.651 Sum_probs=217.6
Q ss_pred CCCceeeEecCCch---hHHHHHHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNG-FAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (238)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~~~~l~~yl~wR~~~tl~~~-~~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~ 78 (238)
.+||++++++++++ ||+++++++++|+++|+||+++..+.+ +.|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 192 ~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 271 (1044)
T PLN02915 192 RQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLD 271 (1044)
T ss_pred CCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHH
Confidence 47999999999985 999999999999999999999965555 46999999999999999999999999999999999
Q ss_pred chhhc---c---CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHH
Q 026442 79 RLQER---I---KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (238)
Q Consensus 79 ~L~~~---~---~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wv 152 (238)
||++| + ++||+|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.|||+||++||
T Consensus 272 rL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~Wv 351 (1044)
T PLN02915 272 RLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWV 351 (1044)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhc
Confidence 99976 2 24999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCCCC----CccccCCCCCCC
Q 026442 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTG----ELEVFFNTECQN 228 (238)
Q Consensus 153 pFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~~g----~f~~w~~~~~~~ 228 (238)
|||||||||||||++||+++.+..++...++|++||++||+||||||+|||+++++....+.+| +|++|+++..+|
T Consensus 352 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~d 431 (1044)
T PLN02915 352 PFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRD 431 (1044)
T ss_pred chhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCC
Confidence 9999999999999999999877566766789999999999999999999999987654444444 589999988899
Q ss_pred CcccceeccC
Q 026442 229 HPTIIKVITS 238 (238)
Q Consensus 229 H~~ivqvi~~ 238 (238)
||+|||||++
T Consensus 432 Hp~IIqVll~ 441 (1044)
T PLN02915 432 HPGMIQVYLG 441 (1044)
T ss_pred CccceEEeec
Confidence 9999999974
No 4
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=2.9e-78 Score=600.14 Aligned_cols=234 Identities=58% Similarity=1.037 Sum_probs=219.8
Q ss_pred CCCCceeeEecCCchhHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccchh
Q 026442 2 SSLPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQ 81 (238)
Q Consensus 2 ~~~pL~~~~~~~~~~~R~~~~~~~~~l~~yl~wR~~~tl~~~~~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~~L~ 81 (238)
+++|||++++.|++++|++.++++++++.|++||+++.++.+..|+++++||+||+|+|+|+|+.+|+|++|.++|++|+
T Consensus 7 ~~~pL~~~~~~~~~~~r~~~~~vl~~~~~~l~~R~~~~~~~~~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p~~l~ 86 (756)
T PLN02190 7 SLPPLCERISHKSYFLRAVDLTILGLLFSLLLYRILHMSENDTVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYPDRLD 86 (756)
T ss_pred CCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHhccceeeecCCCCCcHHHH
Confidence 45799999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hccCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCCc
Q 026442 82 ERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIR 161 (238)
Q Consensus 82 ~~~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v~ 161 (238)
++.++||+||||||||||.||||++|+|||||+||+|||+||++|||||||||++||+||.|||+||++|||||||||||
T Consensus 87 ~r~~~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~Ie 166 (756)
T PLN02190 87 ERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVR 166 (756)
T ss_pred HhhccCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhhcccccccCCC
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccccCCCCCCCCcccceeccC
Q 026442 162 VRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVITS 238 (238)
Q Consensus 162 ~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~~g~f~~w~~~~~~~H~~ivqvi~~ 238 (238)
|||||+||++... +...++|++||++||+||||||+|||+++.++...+.+|+++.|++++++|||+|||||++
T Consensus 167 pRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~~~~~~~~~~~~~~~~~~~~~~dH~~iiqVll~ 240 (756)
T PLN02190 167 VRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDATGDSHWLDAEDDFEAFSNTKPNDHSTIVKVVWE 240 (756)
T ss_pred cCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhccCCCCcccCCcccccCCCCCCCCccceEEEec
Confidence 9999999997432 2234699999999999999999999999866665555678999999999999999999974
No 5
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.9e-78 Score=616.47 Aligned_cols=235 Identities=39% Similarity=0.689 Sum_probs=219.3
Q ss_pred CCCceeeEecCCc---hhHHHHHHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442 3 SLPLYEKVIAKNT---THRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (238)
Q Consensus 3 ~~pL~~~~~~~~~---~~R~~~~~~~~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~ 78 (238)
.+||+++++++++ .||+++++++++|+++|+||+++....++ .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 254 ~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~d 333 (1079)
T PLN02638 254 RQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKWLPVNRETYLD 333 (1079)
T ss_pred CCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccccccccccCHH
Confidence 4699999999998 49999999999999999999999887664 6999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHH
Q 026442 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (238)
Q Consensus 79 ~L~~~~------~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wv 152 (238)
||++|- ++||+|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.|||+||++||
T Consensus 334 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 413 (1079)
T PLN02638 334 RLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWV 413 (1079)
T ss_pred HHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCCCC----CccccCCCCCCC
Q 026442 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTG----ELEVFFNTECQN 228 (238)
Q Consensus 153 pFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~~g----~f~~w~~~~~~~ 228 (238)
|||||||||||||++||+++.+..+++..++|++||+.||+||||||+|||+++++....+++| +|++|++++++|
T Consensus 414 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~d 493 (1079)
T PLN02638 414 PFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRD 493 (1079)
T ss_pred ccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCccCCCCCCCC
Confidence 9999999999999999999877667777789999999999999999999999987666655443 389999999999
Q ss_pred Ccccceecc
Q 026442 229 HPTIIKVIT 237 (238)
Q Consensus 229 H~~ivqvi~ 237 (238)
||+||||++
T Consensus 494 Hp~IiqVll 502 (1079)
T PLN02638 494 HPGMIQVFL 502 (1079)
T ss_pred CHHHHHHHh
Confidence 999999987
No 6
>PLN02436 cellulose synthase A
Probab=100.00 E-value=2.1e-78 Score=615.10 Aligned_cols=236 Identities=38% Similarity=0.659 Sum_probs=217.0
Q ss_pred CCCceeeEecCCch---hHHHHHHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (238)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~~~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~ 78 (238)
.+||++++++++++ ||+++++++++|+++|+||+++..+.++ .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 270 ~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~d 349 (1094)
T PLN02436 270 RQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLD 349 (1094)
T ss_pred CCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHH
Confidence 46999999999984 9999999999999999999999888764 6999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHH
Q 026442 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (238)
Q Consensus 79 ~L~~~~------~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wv 152 (238)
||++|- ++||+|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.|||+||++||
T Consensus 350 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~Wv 429 (1094)
T PLN02436 350 RLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWV 429 (1094)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhcc--CCccCC--CCCccccCCCCCCC
Q 026442 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANN--STSFDL--TGELEVFFNTECQN 228 (238)
Q Consensus 153 pFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~--~~~~~~--~g~f~~w~~~~~~~ 228 (238)
||||||||||||||+||+++.+.+++...++|++||+.||+||||||+|||++++. .++.+. ..+|++|++++++|
T Consensus 430 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~d 509 (1094)
T PLN02436 430 PFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRD 509 (1094)
T ss_pred ccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCC
Confidence 99999999999999999998775666667799999999999999999999999873 333221 12379999999999
Q ss_pred CcccceeccC
Q 026442 229 HPTIIKVITS 238 (238)
Q Consensus 229 H~~ivqvi~~ 238 (238)
||+|||||++
T Consensus 510 Hp~IIqVll~ 519 (1094)
T PLN02436 510 HPGMIQVFLG 519 (1094)
T ss_pred CccceEEEec
Confidence 9999999974
No 7
>PLN02189 cellulose synthase
Probab=100.00 E-value=3.2e-78 Score=613.26 Aligned_cols=236 Identities=39% Similarity=0.663 Sum_probs=219.2
Q ss_pred CCCceeeEecCCch---hHHHHHHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442 3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNG-FAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (238)
Q Consensus 3 ~~pL~~~~~~~~~~---~R~~~~~~~~~l~~yl~wR~~~tl~~~-~~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~ 78 (238)
.+||++++++++++ ||+++++++++|+++++||+++..+.+ +.|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus 236 ~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~d 315 (1040)
T PLN02189 236 RQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLD 315 (1040)
T ss_pred CCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHH
Confidence 57999999999984 999999999999999999999988665 57999999999999999999999999999999999
Q ss_pred chhhcc------CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHH
Q 026442 79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV 152 (238)
Q Consensus 79 ~L~~~~------~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wv 152 (238)
||++|- ++||+|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.|||+||++||
T Consensus 316 rL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 395 (1040)
T PLN02189 316 RLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWV 395 (1040)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 999872 24999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCCCC----CccccCCCCCCC
Q 026442 153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTG----ELEVFFNTECQN 228 (238)
Q Consensus 153 pFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~~g----~f~~w~~~~~~~ 228 (238)
|||||||||||||++||+++.+.+++...++|++||+.||+||||||+|||+++++....+++| +|++|++++++|
T Consensus 396 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~d 475 (1040)
T PLN02189 396 PFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRD 475 (1040)
T ss_pred ccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCC
Confidence 9999999999999999999877666777789999999999999999999999987666655443 369999999999
Q ss_pred CcccceeccC
Q 026442 229 HPTIIKVITS 238 (238)
Q Consensus 229 H~~ivqvi~~ 238 (238)
||+||||+++
T Consensus 476 Hp~IiQVll~ 485 (1040)
T PLN02189 476 HPGMIQVFLG 485 (1040)
T ss_pred CHHHHHHHhc
Confidence 9999999874
No 8
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1e-76 Score=590.10 Aligned_cols=229 Identities=32% Similarity=0.580 Sum_probs=209.3
Q ss_pred CCCCceeeEecCCch-hHHHHHHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442 2 SSLPLYEKVIAKNTT-HRFLDVTILFLLLSLLFYRLLSLKHNG--FAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ 78 (238)
Q Consensus 2 ~~~pL~~~~~~~~~~-~R~~~~~~~~~l~~yl~wR~~~tl~~~--~~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~ 78 (238)
+.+|||++++.+++. ||+++++++++|+++++||+++.+..+ +.|+++++||+||+|+|+++|++||+|++|.+++|
T Consensus 10 ~~~pL~~~~~~~~~~~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~~~~ 89 (734)
T PLN02893 10 GAPPLHTCHPMRRTIANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRVFIE 89 (734)
T ss_pred CCCCceeeeecCCchHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCccccccccccCHH
Confidence 357999999999994 999999999999999999999888765 58999999999999999999999999999999999
Q ss_pred chhhc--cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHH
Q 026442 79 RLQER--IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCK 156 (238)
Q Consensus 79 ~L~~~--~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~ 156 (238)
||+++ .++||+|||||||+||.||||.+|+|||||+||+|||+||++|||||||||++||+||.|||+||++||||||
T Consensus 90 ~L~~~~~~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~~WvPFCr 169 (734)
T PLN02893 90 HLEHYAKESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFATHWLPFCK 169 (734)
T ss_pred HHhhhcccccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHHhhccccc
Confidence 99865 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCcc-------CCCCCccccC-CCCCCC
Q 026442 157 KYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSF-------DLTGELEVFF-NTECQN 228 (238)
Q Consensus 157 k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~-------~~~g~f~~w~-~~~~~~ 228 (238)
||||||||||+||++++ ++|.+||++||+||||||+|||++++..... +++++|++|+ |++++|
T Consensus 170 k~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~d 241 (734)
T PLN02893 170 KNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVERGKVSTDYITCDQEREAFSRWTDKFTRQD 241 (734)
T ss_pred ccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhcCcCchhhhhhcccccccccCcCCCCCCC
Confidence 99999999999999873 3467899999999999999999997532221 2234599996 678999
Q ss_pred CcccceeccC
Q 026442 229 HPTIIKVITS 238 (238)
Q Consensus 229 H~~ivqvi~~ 238 (238)
||+||||+++
T Consensus 242 H~~ivqV~l~ 251 (734)
T PLN02893 242 HPTVIQVLLE 251 (734)
T ss_pred CCceeeeecc
Confidence 9999999974
No 9
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=2e-76 Score=602.10 Aligned_cols=204 Identities=38% Similarity=0.673 Sum_probs=192.8
Q ss_pred CCceeeEecCCch---hHHHHHHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccc
Q 026442 4 LPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNG-FAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQR 79 (238)
Q Consensus 4 ~pL~~~~~~~~~~---~R~~~~~~~~~l~~yl~wR~~~tl~~~-~~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~~ 79 (238)
+||++++++++++ ||+++++++++|+++|+||++|..... +.|+++++||+||+|+|+|+|++||+|++|.+++++
T Consensus 268 ~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~r 347 (1135)
T PLN02248 268 RPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAV 347 (1135)
T ss_pred CCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHHH
Confidence 6899999999985 999999999999999999999954344 689999999999999999999999999999999999
Q ss_pred hhhcc-----------CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHH
Q 026442 80 LQERI-----------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFA 148 (238)
Q Consensus 80 L~~~~-----------~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa 148 (238)
|+++. ++||+|||||||+||+||||.+|+|||||+||+|||+|||+||||||||+++||+||.|||+||
T Consensus 348 L~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA 427 (1135)
T PLN02248 348 LKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFA 427 (1135)
T ss_pred HHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHHH
Confidence 99873 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhc
Q 026442 149 KLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAAN 207 (238)
Q Consensus 149 ~~wvpFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~ 207 (238)
+.||||||||||||||||+||+++.+.+++...++|++||++||+||||||+|||++.+
T Consensus 428 ~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~ 486 (1135)
T PLN02248 428 RIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPD 486 (1135)
T ss_pred HhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999877666767789999999999999999999999965
No 10
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=7.9e-56 Score=438.83 Aligned_cols=149 Identities=48% Similarity=0.747 Sum_probs=137.9
Q ss_pred ccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCCcccCCcccc
Q 026442 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYF 169 (238)
Q Consensus 90 VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v~~r~P~~YF 169 (238)
|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.||++||++||||||||+||||||++||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCC----CCCccccCCCCCCCCcccceeccC
Q 026442 170 LRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDL----TGELEVFFNTECQNHPTIIKVITS 238 (238)
Q Consensus 170 ~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~----~g~f~~w~~~~~~~H~~ivqvi~~ 238 (238)
+++.+..++...++|++||+.||++|||||+|||+++++..+.++ .+++++|++++++|||+||||+++
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~ 153 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLD 153 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeecc
Confidence 999887777778999999999999999999999999775433322 234699999999999999999974
No 11
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=192.97 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=138.8
Q ss_pred cCCchhHHHHHH-HHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccchhhccC
Q 026442 12 AKNTTHRFLDVT-ILFLLLSLLFYRLLSLKHNG-----FAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIK 85 (238)
Q Consensus 12 ~~~~~~R~~~~~-~~~~l~~yl~wR~~~tl~~~-----~~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~~L~~~~~ 85 (238)
.++++.|++.++ .+++.+.|++||+++|++.+ ...++++++|+++.++.+++.+..++|.+|++.+ ++...+
T Consensus 180 ~~~~~~~~~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--~~~~~~ 257 (852)
T PRK11498 180 MPGRFSALMLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--LPKDMS 257 (852)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--CCcccC
Confidence 345555655544 44456679999999999964 1357889999999999999999999999887543 333356
Q ss_pred CCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhh---------------------hHHHH
Q 026442 86 ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY---------------------SLVEA 144 (238)
Q Consensus 86 ~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~---------------------al~ea 144 (238)
.+|+|||+||||| ||.+++.+|+.|++++|||.+|+.|||+|||+++.+.+ ++..|
T Consensus 258 ~~P~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~a 334 (852)
T PRK11498 258 LWPTVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNA 334 (852)
T ss_pred CCCcEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHH
Confidence 7999999999999 99999999999999999999999999999999988654 12222
Q ss_pred -------------------HHHHHHHHHHH-HHcCCc-ccCCccccccCCCCCCCCC-CcccHHHHHHHHHHHHHHHHHH
Q 026442 145 -------------------SKFAKLWVPFC-KKYNIR-VRAPFRYFLRESDEPPCAS-SWEFQQDWEKMKEEYERLCGNI 202 (238)
Q Consensus 145 -------------------a~Fa~~wvpFC-~k~~v~-~r~P~~YF~~~~~~~~~~~-~~~f~~e~~~~k~~Ye~~k~ri 202 (238)
..|.+..+++. +.-+|. +++|+.||+.++. ..+.+ ...+.+|-+.+...+++.++..
T Consensus 335 L~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~-~rnl~~~~~~~~e~~~fy~~iq~g~~~~ 413 (852)
T PRK11498 335 LKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPF-ERNLGRFRKTPNEGTLFYGLVQDGNDMW 413 (852)
T ss_pred HHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchH-HHhhHHHhhcccchhHHHHHHHhHHHhh
Confidence 56666777754 555777 8999999987653 22211 1234456666666666666555
Q ss_pred HH
Q 026442 203 EA 204 (238)
Q Consensus 203 e~ 204 (238)
+.
T Consensus 414 ~a 415 (852)
T PRK11498 414 DA 415 (852)
T ss_pred cc
Confidence 43
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.84 E-value=2.9e-20 Score=186.79 Aligned_cols=144 Identities=22% Similarity=0.306 Sum_probs=117.6
Q ss_pred CCchhHHHHHHHHHH-HHHHHHHHhcCCCCChh-----HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccchhhccCC
Q 026442 13 KNTTHRFLDVTILFL-LLSLLFYRLLSLKHNGF-----AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKE 86 (238)
Q Consensus 13 ~~~~~R~~~~~~~~~-l~~yl~wR~~~tl~~~~-----~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~~L~~~~~~ 86 (238)
++++.|++.++.+++ .+.|++||+++|+|.+. ..++++++|+++.++.+++.+..++|.+|.+.+. +.+.+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~ 129 (713)
T TIGR03030 52 NGKRPRLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVPL--PLDPEE 129 (713)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCC--CCCccc
Confidence 345567776666665 45699999999999641 3578899999999999999999999998876542 233578
Q ss_pred CCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhh----hHHHHHHHHHHHHHHHHHcCCc
Q 026442 87 LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY----SLVEASKFAKLWVPFCKKYNIR 161 (238)
Q Consensus 87 lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~----al~eaa~Fa~~wvpFC~k~~v~ 161 (238)
+|+|||+||||| |+++++.+|+.|++++|||.+|+.|||+|||+++.|.. ...|+.+-+..+..+|+++||.
T Consensus 130 ~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 205 (713)
T TIGR03030 130 WPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVN 205 (713)
T ss_pred CCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcE
Confidence 999999999999 99999999999999999999999999999999988753 2333334455778899999988
No 13
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.85 E-value=1.3e-08 Score=94.24 Aligned_cols=87 Identities=25% Similarity=0.284 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCCccchhhccCC-CCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEE
Q 026442 50 FLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKE-LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYV 128 (238)
Q Consensus 50 ~~aEl~~~~~wll~~~~~~~P~~R~~~~~~L~~~~~~-lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv 128 (238)
+..++..........+....+.++...+..-. ... +|.|||+||+|| |+++++.+|+.|+.++||| ++.|+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp--~~eviv 89 (439)
T COG1215 17 ILLLILSIITLLLGYLLLVLPLSRPRKKLPKD--ADKLLPKVSVIIPAYN---EEPEVLEETLESLLSQDYP--RYEVIV 89 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccCCCCc--ccccCCceEEEEecCC---CchhhHHHHHHHHHhCCCC--CceEEE
Confidence 33343344444445566666666554432211 222 699999999999 9999999999999999999 589999
Q ss_pred cCCCCCchhhhhHHH
Q 026442 129 SDDGCSPLNFYSLVE 143 (238)
Q Consensus 129 ~DDG~s~~t~~al~e 143 (238)
+|||+++-+.+-+.+
T Consensus 90 v~d~~~d~~~~~~~~ 104 (439)
T COG1215 90 VDDGSTDETYEILEE 104 (439)
T ss_pred ECCCCChhHHHHHHH
Confidence 999999987775554
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=98.84 E-value=4.9e-08 Score=98.92 Aligned_cols=132 Identities=11% Similarity=0.112 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCh-hH---------HHHHHHHHHHHHHHHHHhhhhhcccccCCCCc----cchh
Q 026442 16 THRFLDVTILFLLLSLLFYRLLSLKHNG-FA---------WFVAFLCESCFTFVWVLITGTKWTPISYNTYP----QRLQ 81 (238)
Q Consensus 16 ~~R~~~~~~~~~l~~yl~wR~~~tl~~~-~~---------wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~----~~L~ 81 (238)
+.|++.++..++.+.|..|+...+++.+ .. ..+++..+.+.....+++.+...+ .|.+.. ..-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~~~~~~~~~~ 117 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKYSISASAAGD 117 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcccCCcccccC
Confidence 4788888888888899999999998753 11 234556677666666667655433 221111 0000
Q ss_pred hccCCCCCccEEEeCCCCCCCchhhHHHHHH----HhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHH
Q 026442 82 ERIKELPPLDIFVTTADPYLEPPILTVNTVL----SLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKK 157 (238)
Q Consensus 82 ~~~~~lP~VDVFI~T~np~~EP~~~v~~Tvl----s~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k 157 (238)
......|.|+|+||+|| |+++.+..++. |..+.||| +++.+||+|||.++.+.. .|-. .|-.+|++
T Consensus 118 ~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~e~~----~~~~L~~~ 187 (691)
T PRK05454 118 PPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--AEEA----AWLELRAE 187 (691)
T ss_pred CCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--HHHH----HHHHHHHh
Confidence 11356899999999999 99987655554 55558897 589999999999986543 2212 34458888
Q ss_pred cC
Q 026442 158 YN 159 (238)
Q Consensus 158 ~~ 159 (238)
++
T Consensus 188 ~~ 189 (691)
T PRK05454 188 LG 189 (691)
T ss_pred cC
Confidence 74
No 15
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.59 E-value=2.5e-07 Score=88.31 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=51.1
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHH
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEA 144 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ea 144 (238)
.+.+|.|+|+||+|| |. ..+.+|+.|+++.+||.+++.|+|.|||.++-|.+-+.++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~ 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH
Confidence 367999999999999 87 7899999999999999999999999999999987766554
No 16
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=98.26 E-value=3.5e-06 Score=80.34 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=46.6
Q ss_pred CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 85 ~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
+..|.|+|+||+|| |+.. +.+|+.|+++.||| ++.|+|.|||.++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~~-i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~ 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGLN-ARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHHH-HHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH
Confidence 45799999999999 9865 68999999999999 589999999999988776555
No 17
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.03 E-value=3e-05 Score=72.58 Aligned_cols=54 Identities=30% Similarity=0.341 Sum_probs=47.1
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
....|.|.|.||+|| |+ +.+.+|+.|+++.+|| +..|+|.|||.++-|.+.+.+
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~ 103 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR 103 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH
Confidence 457899999999999 86 5689999999999999 689999999999988766554
No 18
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.03 E-value=2.3e-05 Score=73.45 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=47.6
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
.+..|.|.|.||+|| |. +.+..++-|+++.|||. ++.|+|.|||.++-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~ 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH
Confidence 467999999999999 86 66889999999999995 489999999999988765554
No 19
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=97.96 E-value=1.4e-05 Score=67.13 Aligned_cols=49 Identities=39% Similarity=0.641 Sum_probs=45.0
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhh
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY 139 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~ 139 (238)
|.|.|.||||| |+.+.+..++.|+++.+||.+++.|+|.|||.++-|.+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~ 49 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRA 49 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHH
Confidence 78999999999 98899999999999999998889999999998876554
No 20
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=97.86 E-value=4e-05 Score=68.64 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=36.2
Q ss_pred ccEEEeCCCCCCCchhhHHHHHHHhhc----cCCCCCcceEEEcCCCCCch
Q 026442 90 LDIFVTTADPYLEPPILTVNTVLSLLA----VDYPAHRLACYVSDDGCSPL 136 (238)
Q Consensus 90 VDVFI~T~np~~EP~~~v~~Tvls~la----~DYP~~kl~vYv~DDG~s~~ 136 (238)
|-|+||||| ||+.++.+|+.+... .|| ..++.|||+|||..+.
T Consensus 1 ~SIliP~~n---e~~~~l~~~l~~~~~~~~~~~~-~~~~eI~vldD~~d~~ 47 (254)
T cd04191 1 TAIVMPVYN---EDPARVFAGLRAMYESLAKTGL-ADHFDFFILSDTRDPD 47 (254)
T ss_pred CEEEEeCCC---CCHHHHHHHHHHHHHHHHhcCC-cCceEEEEECCCCChH
Confidence 579999999 999999999998764 355 2379999999998874
No 21
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.84 E-value=0.00011 Score=68.58 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 85 ~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
...|.|.|+||+|| |... +.+++.|.++.|||. +.|.|.||+.++-|.+-+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~~-l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~ 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEPE-LYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR 90 (373)
T ss_pred CCCCCeEEEEECCC---CChh-HHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH
Confidence 45899999999999 8764 679999999999994 89999999988877654433
No 22
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=97.73 E-value=1.8e-05 Score=69.12 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=39.4
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCC--------CCcceEEEcCCCCCc
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYP--------AHRLACYVSDDGCSP 135 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP--------~~kl~vYv~DDG~s~ 135 (238)
|+||.|| |+..++.+||.|+++.||| .+|+.|+|.|||++.
T Consensus 1 v~ip~yN---E~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d 49 (244)
T cd04190 1 VCVTMYN---EDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK 49 (244)
T ss_pred CEEeeec---CCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc
Confidence 6899999 9999999999999999999 799999999999997
No 23
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=97.70 E-value=5.7e-05 Score=65.14 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.|.|.||+|| |+ ..+..|+.|+++.+||.+++.|.|.|||.++.|.+-+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH
Confidence 78999999999 97 678999999999999988899999999999887765544
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=97.54 E-value=7.1e-05 Score=64.13 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=48.1
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
.+..|.|-|.||||| |. ..+.+++.|+.+.+||.+++.|+|.|||.++.|...+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH
Confidence 467899999999999 76 668899999999999988899999999999877664443
No 25
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=97.51 E-value=0.00053 Score=67.63 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=47.8
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhh-ccCCCCCcceEEEcCCCCCchhhhhHHHHH
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLL-AVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~l-a~DYP~~kl~vYv~DDG~s~~t~~al~eaa 145 (238)
....|.|+|+||.|| |. .++.+||-+++ ++||| ++.|+|.|||..+.|...+.+.+
T Consensus 62 ~~~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~ 118 (504)
T PRK14716 62 SVPEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA 118 (504)
T ss_pred cCCCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH
Confidence 345999999999999 85 58999999864 79997 89999999999999888777643
No 26
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.48 E-value=0.00022 Score=60.72 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=44.7
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEA 144 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ea 144 (238)
|.|.|.||+|| |. +.+..++.|+++.+||.+++-|.|.|| +++-|...+.+.
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~ 52 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI 52 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH
Confidence 68999999999 85 578899999999999998899999998 787777766553
No 27
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.42 E-value=7.1e-05 Score=63.08 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=37.5
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.|.|.||+|| |+. .+..|+.|+++.+|| ++.|+|.|||.++-+.+.+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~~ 50 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILRA 50 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHHH
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHHH
Confidence 78999999999 876 888899999999996 699999999998887765543
No 28
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.40 E-value=0.00022 Score=58.83 Aligned_cols=45 Identities=31% Similarity=0.416 Sum_probs=40.3
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhh
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS 140 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~a 140 (238)
|+||+|| |+ ..+..|+-++++.+||.+++.|+|.|||+++-|.+.
T Consensus 1 VvIp~~n---e~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~ 45 (183)
T cd06438 1 ILIPAHN---EE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQV 45 (183)
T ss_pred CEEeccc---hH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHH
Confidence 6899999 88 678999999999999988899999999999877654
No 29
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=97.29 E-value=0.00073 Score=69.34 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=41.5
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhh-ccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLL-AVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~l-a~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
.++.|.|.|+||.|| |. .++.+|+-+++ ++||| ++.|++.||+..+.|.+.+.+
T Consensus 59 ~~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP--~~eI~vi~~~nD~~T~~~~~~ 113 (727)
T PRK11234 59 KPDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYE--NYHIFVGTYPNDPATQADVDA 113 (727)
T ss_pred cCCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCC--CeEEEEEecCCChhHHHHHHH
Confidence 466799999999999 86 56778888776 79999 499999966555555554444
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.23 E-value=0.00051 Score=57.18 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=41.0
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ 142 (238)
|.||||| |+ ..+.+|+-|++..+||.+++.|+|.|||.++-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~ 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH
Confidence 6899999 86 77999999999999998889999999999887766443
No 31
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.21 E-value=0.00083 Score=56.98 Aligned_cols=42 Identities=33% Similarity=0.504 Sum_probs=38.5
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhh
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNF 138 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~ 138 (238)
|+||||| |+++.+.+++.|++..+|| +..|+|.|||.++-+.
T Consensus 2 iiip~~n---e~~~~l~~~l~sl~~q~~~--~~eiiVvdd~s~D~t~ 43 (236)
T cd06435 2 IHVPCYE---EPPEMVKETLDSLAALDYP--NFEVIVIDNNTKDEAL 43 (236)
T ss_pred eeEeeCC---CcHHHHHHHHHHHHhCCCC--CcEEEEEeCCCCchhH
Confidence 7899999 9999999999999999999 5789999999988665
No 32
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.15 E-value=0.00074 Score=55.61 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=40.8
Q ss_pred cEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 91 DVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
.|.||||| |+ ..+.+++.|++..+|| ++.|+|.|||.++-|.+.+.+
T Consensus 1 sIvIp~yn---~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~ 47 (214)
T cd04196 1 AVLMATYN---GE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKE 47 (214)
T ss_pred CEEEEecC---cH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHH
Confidence 47999999 77 6679999999999999 789999999999987766554
No 33
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.15 E-value=0.00087 Score=55.98 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.|.|.||+|| |... +..++-|.++.+|| .+.+.|.|||+++-|...+.+
T Consensus 1 p~vsviip~~n---~~~~-l~~~L~sl~~q~~~--~~eiivVdd~s~d~t~~~~~~ 50 (196)
T cd02520 1 PGVSILKPLCG---VDPN-LYENLESFFQQDYP--KYEILFCVQDEDDPAIPVVRK 50 (196)
T ss_pred CCeEEEEecCC---CCcc-HHHHHHHHHhccCC--CeEEEEEeCCCcchHHHHHHH
Confidence 78999999999 8664 78999999999999 489999999999877665444
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.96 E-value=0.0016 Score=53.57 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=42.4
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ 142 (238)
|.|.|.||||| |....+.+|+.|+++..|| .+.|.|.|||.++-+...+.
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~ 50 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVL 50 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHH
Confidence 67999999999 8777899999999999998 57899999999875554433
No 35
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=96.79 E-value=0.0018 Score=54.66 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=41.0
Q ss_pred CccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHH
Q 026442 89 PLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (238)
Q Consensus 89 ~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ 142 (238)
+|+|.||||| |++..+.+|+.|+.+.+ +..++|.|||.++-+...+.
T Consensus 1 ~isVvIp~~n---e~~~~l~~~l~sl~~q~----~~eiivvdd~s~d~~~~~l~ 47 (235)
T cd06434 1 DVTVIIPVYD---EDPDVFRECLRSILRQK----PLEIIVVTDGDDEPYLSILS 47 (235)
T ss_pred CeEEEEeecC---CChHHHHHHHHHHHhCC----CCEEEEEeCCCChHHHHHHH
Confidence 5899999999 99999999999999988 46899999999987766553
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=96.72 E-value=0.0033 Score=52.97 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=42.3
Q ss_pred ccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 90 VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.|.||||| |+ ..+.+++-++++.+||..+..|+|.|||.++.|..-+.+
T Consensus 2 ~sIiip~~n---~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~ 51 (249)
T cd02525 2 VSIIIPVRN---EE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE 51 (249)
T ss_pred EEEEEEcCC---ch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH
Confidence 789999999 76 467999999999999988899999999999876554443
No 37
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.0035 Score=47.41 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=43.9
Q ss_pred CCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 87 LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 87 lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
.|.+-|.||||| |+ ..+..++.|++.-.|+. ..|.|.|||.++-|-+-+.+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~ 52 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIE 52 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHH
Confidence 578999999999 66 89999999999999995 56999999999987765444
No 38
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.45 E-value=0.0036 Score=48.45 Aligned_cols=49 Identities=27% Similarity=0.243 Sum_probs=38.8
Q ss_pred cEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHH
Q 026442 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (238)
Q Consensus 91 DVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa 145 (238)
+|.||||| | ...+..|+.|++...++ ...|+|.|||.++-+...+.+..
T Consensus 1 Svvip~~n---~-~~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~~~~~~~~~~ 49 (169)
T PF00535_consen 1 SVVIPTYN---E-AEYLERTLESLLKQTDP--DFEIIVVDDGSTDETEEILEEYA 49 (169)
T ss_dssp EEEEEESS-----TTTHHHHHHHHHHHSGC--EEEEEEEECS-SSSHHHHHHHHH
T ss_pred CEEEEeeC---C-HHHHHHHHHHHhhccCC--CEEEEEecccccccccccccccc
Confidence 48999999 7 67888999998888666 77999999999888877666643
No 39
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=96.40 E-value=0.0085 Score=61.49 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=40.9
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhh-ccCCCCCcceEEE---cCCCCCchhhh
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLL-AVDYPAHRLACYV---SDDGCSPLNFY 139 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~l-a~DYP~~kl~vYv---~DDG~s~~t~~ 139 (238)
..+.|.|.|+||.|| |. +++..||-+++ ++||| ++.|+| -|||.+....+
T Consensus 67 ~~~~~~vsIlVPa~n---E~-~VI~~~v~~ll~~ldYp--~~~I~v~~~~nD~~T~~~~~ 120 (703)
T PRK15489 67 ERDEQPLAIMVPAWK---EY-DVIAKMIENMLATLDYR--RYVIFVGTYPNDAETITEVE 120 (703)
T ss_pred ccCCCceEEEEeCCC---cH-HHHHHHHHHHHhcCCCC--CeEEEEEecCCCccHHHHHH
Confidence 467899999999999 85 78899999986 89999 678999 69986554443
No 40
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=96.21 E-value=0.007 Score=46.58 Aligned_cols=46 Identities=39% Similarity=0.532 Sum_probs=39.6
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||||| |+ ..+.+|+.|++.-.|+ ...|+|.|||.++.|..-+.+
T Consensus 1 Viip~~n---~~-~~l~~~l~sl~~q~~~--~~~iivvdd~s~d~t~~~~~~ 46 (180)
T cd06423 1 IIVPAYN---EE-AVIERTIESLLALDYP--KLEVIVVDDGSTDDTLEILEE 46 (180)
T ss_pred CeecccC---hH-HHHHHHHHHHHhCCCC--ceEEEEEeCCCccchHHHHHH
Confidence 5799999 87 8999999999999996 679999999999887765544
No 41
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.20 E-value=0.0095 Score=48.01 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=39.3
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||||| ++ ..+.+++.|+++-.||. +.|+|.|||.++-+.+-+.+
T Consensus 2 ivi~~~n---~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~~~ 47 (202)
T cd06433 2 IITPTYN---QA-ETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDIIKK 47 (202)
T ss_pred EEEeccc---hH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHHHH
Confidence 7899999 76 78899999999999984 89999999999887765443
No 42
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=96.20 E-value=0.029 Score=52.08 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=38.9
Q ss_pred CCCCCccEEEeCCCCCCCchhhHHHHHHHhhcc------CCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAV------DYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 85 ~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~------DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
...|.|+|.||+|| |... +..++-++.+. ++|.....|+|.|||.++-|.+-+.+
T Consensus 67 ~~~~~isVVIP~yN---e~~~-i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~ 127 (333)
T PTZ00260 67 DSDVDLSIVIPAYN---EEDR-LPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKD 127 (333)
T ss_pred CCCeEEEEEEeeCC---CHHH-HHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHH
Confidence 45788999999999 7654 44444444332 35556789999999999988765443
No 43
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.13 E-value=0.0098 Score=46.52 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=40.2
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEA 144 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ea 144 (238)
|.||+|| | ...+.+|+.|..+.+|| +..++|.|||..+-+.+.+.+.
T Consensus 1 vii~~~~---~-~~~l~~~l~sl~~~~~~--~~~iiivdd~s~~~~~~~~~~~ 47 (166)
T cd04186 1 IIIVNYN---S-LEYLKACLDSLLAQTYP--DFEVIVVDNASTDGSVELLREL 47 (166)
T ss_pred CEEEecC---C-HHHHHHHHHHHHhccCC--CeEEEEEECCCCchHHHHHHHh
Confidence 6799999 8 67899999999999996 6799999999998877766553
No 44
>PRK10018 putative glycosyl transferase; Provisional
Probab=95.81 E-value=0.017 Score=52.48 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=38.5
Q ss_pred CCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCc
Q 026442 86 ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (238)
Q Consensus 86 ~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~ 135 (238)
+.|.|-|.||||| ++..+ ..|+-|+++-.|| .+.+.|.|||.+.
T Consensus 3 ~~p~VSVIip~yN---~~~~l-~~~l~Svl~Qt~~--~~EiIVVDDgS~~ 46 (279)
T PRK10018 3 DNPLISIYMPTWN---RQQLA-IRAIKSVLRQDYS--NWEMIIVDDCSTS 46 (279)
T ss_pred CCCEEEEEEEeCC---CHHHH-HHHHHHHHhCCCC--CeEEEEEECCCCC
Confidence 4688999999999 87654 6899999999999 5899999999873
No 45
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.78 E-value=0.015 Score=48.47 Aligned_cols=48 Identities=21% Similarity=0.143 Sum_probs=40.2
Q ss_pred ccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 90 VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.|.||+|| |+. .+..++.|+++-.|+ ...|+|.|||.++-+.+.+.+
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d~~~~~~~~ 48 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTDGTVAIARS 48 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCccHHHHHhc
Confidence 579999999 876 679999999998885 679999999998877765444
No 46
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.75 E-value=0.014 Score=48.22 Aligned_cols=46 Identities=22% Similarity=0.067 Sum_probs=38.4
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|+||||| |+ ..+..++.|+++..|| ...|+|.|||.++.|...+.+
T Consensus 1 viI~~~n---~~-~~l~~~l~sl~~q~~~--~~eiiivD~~s~d~t~~~~~~ 46 (202)
T cd04185 1 AVVVTYN---RL-DLLKECLDALLAQTRP--PDHIIVIDNASTDGTAEWLTS 46 (202)
T ss_pred CEEEeeC---CH-HHHHHHHHHHHhccCC--CceEEEEECCCCcchHHHHHH
Confidence 6899999 76 6789999999999999 458999999999876654443
No 47
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=95.74 E-value=0.02 Score=49.49 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=36.6
Q ss_pred CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 85 ~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
...|.|.|.||+|| |...+ ..++-++.........+.|+|.|||.++-|.+.+.+
T Consensus 6 ~~~~~vsVvIp~yn---e~~~l-~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~ 60 (243)
T PLN02726 6 EGAMKYSIIVPTYN---ERLNI-ALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQ 60 (243)
T ss_pred CCCceEEEEEccCC---chhhH-HHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHH
Confidence 45789999999999 76544 233333322111123789999999999988765544
No 48
>PRK10073 putative glycosyl transferase; Provisional
Probab=95.73 E-value=0.018 Score=53.26 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=43.8
Q ss_pred CCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 86 ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 86 ~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
.-|.|-|.||+|| ++ ..+..++-|+++-.|+ .+.|.|.|||.++-|.+-+.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~ 55 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH 55 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH
Confidence 3588999999999 65 6889999999999998 689999999999877654433
No 49
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.67 E-value=0.024 Score=46.57 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=35.7
Q ss_pred EEEeCCCCCCCc-hhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhh
Q 026442 92 IFVTTADPYLEP-PILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY 139 (238)
Q Consensus 92 VFI~T~np~~EP-~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~ 139 (238)
|.||||| +. ++.+..|+.|+++-+|| ...+.|.|||.+.-...
T Consensus 2 viip~~n---~~~~~~l~~~l~Sl~~q~~~--~~eiiivdd~ss~d~t~ 45 (201)
T cd04195 2 VLMSVYI---KEKPEFLREALESILKQTLP--PDEVVLVKDGPVTQSLN 45 (201)
T ss_pred EEEEccc---cchHHHHHHHHHHHHhcCCC--CcEEEEEECCCCchhHH
Confidence 7899999 64 68999999999999999 45889999998554333
No 50
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=95.60 E-value=0.016 Score=48.50 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=37.9
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLV 142 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ 142 (238)
|.||+|| |. ..+..|+-|+++.+ | ++.|+|.|||.++-|...+.
T Consensus 1 ViIp~~N---e~-~~l~~~l~sl~~~~-~--~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 1 VLVPCLN---EE-AVIQRTLASLLRNK-P--NFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred CEEeccc---cH-HHHHHHHHHHHhCC-C--CeEEEEEECCCCcCHHHHHh
Confidence 6899999 87 67899999999988 5 68999999999998776554
No 51
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=95.46 E-value=0.028 Score=45.29 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=37.9
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||+|| |+ ..+.+|+-|+++..|+ ...|.|.|||.++-|..-+.+
T Consensus 1 ivip~~n---~~-~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~t~~~~~~ 46 (182)
T cd06420 1 LIITTYN---RP-EALELVLKSVLNQSIL--PFEVIIADDGSTEETKELIEE 46 (182)
T ss_pred CEEeecC---Ch-HHHHHHHHHHHhccCC--CCEEEEEeCCCchhHHHHHHH
Confidence 5799999 87 5579999999999988 568999999999877654443
No 52
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=95.42 E-value=0.023 Score=47.84 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=39.3
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||+|| +. ..+..|+-|+++.+|| +...|.|.|||.++-|...+.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~i~~~ 47 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAEIIEK 47 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHHHHHH
Confidence 6799999 54 6899999999999998 4689999999999877654444
No 53
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=95.24 E-value=0.03 Score=45.12 Aligned_cols=48 Identities=23% Similarity=0.098 Sum_probs=40.1
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||||| |+ ..+.+|+.|+....|+.....|+|.|||.++-+.+.+.+
T Consensus 1 iii~~~n---~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~ 48 (185)
T cd04179 1 VVIPAYN---EE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARE 48 (185)
T ss_pred CeecccC---hH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHH
Confidence 5799999 76 678899999999998666789999999999877665544
No 54
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=95.24 E-value=0.03 Score=50.04 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=42.7
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||||| |+++.+.+|+-|+++-.||.....|.|.|||.++-|...+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~ 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH
Confidence 7899999 988999999999999999866679999999999887765543
No 55
>PRK10063 putative glycosyl transferase; Provisional
Probab=94.58 E-value=0.053 Score=48.05 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=40.2
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhcc-CCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAV-DYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~-DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.|-|.||||| |. ..+..|+-|+.+. ..+...+.|.|.|||.++-|.+-+.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~ 53 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLEN 53 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHH
Confidence 66899999999 74 4678888888754 33334789999999999988775544
No 56
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=94.29 E-value=0.075 Score=48.90 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=39.8
Q ss_pred CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 85 ~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
..-|.|.|.||+|| |.. .+..++-++.+..+......|.|.|||.++-|.+-+.+
T Consensus 28 ~~~~~vSVVIPayN---ee~-~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~ 82 (306)
T PRK13915 28 KAGRTVSVVLPALN---EEE-TVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAA 82 (306)
T ss_pred cCCCCEEEEEecCC---cHH-HHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHH
Confidence 45699999999999 864 45667767666544222458999999999987764443
No 57
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=94.03 E-value=0.084 Score=43.96 Aligned_cols=44 Identities=18% Similarity=-0.006 Sum_probs=35.2
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhh
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS 140 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~a 140 (238)
|.||||| |+ ..+.+++-|+....| ...+.|+|.|||.++-|..-
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~-~~~~eiiiVDd~S~d~t~~~ 44 (224)
T cd06442 1 IIIPTYN---ER-ENIPELIERLDAALK-GIDYEIIVVDDNSPDGTAEI 44 (224)
T ss_pred CeEeccc---hh-hhHHHHHHHHHHhhc-CCCeEEEEEeCCCCCChHHH
Confidence 6799999 76 446788888888887 23689999999998877653
No 58
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.92 E-value=1.4 Score=44.70 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=76.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCCCChh------HHHHHHHHHHH---HHHHH-HHhhhhhcccccCC--CCccchh
Q 026442 14 NTTHRFLDVTILFLLLSLLFYRLLSLKHNGF------AWFVAFLCESC---FTFVW-VLITGTKWTPISYN--TYPQRLQ 81 (238)
Q Consensus 14 ~~~~R~~~~~~~~~l~~yl~wR~~~tl~~~~------~wl~l~~aEl~---~~~~w-ll~~~~~~~P~~R~--~~~~~L~ 81 (238)
+++.|.+.+...++....-.|-...+++.+- +-+++|+.-.+ .+|.- +.+.+....--+|. +.++..
T Consensus 61 g~lRR~~L~~~tla~tv~at~~m~~vl~~gG~~~le~~iL~Lfa~lFcwvs~~F~tAl~GF~~L~~~~~r~~~~~p~~p- 139 (736)
T COG2943 61 GTLRRYILLGLTLAQTVVATWYMKTVLPYGGPYMLEAGILVLFAVLFCWVSAGFWTALMGFLVLLFGRDRYLSIAPNEP- 139 (736)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCcCCCCCCCC-
Confidence 3457888877777777777787777777641 11222221111 11211 12222222211221 222110
Q ss_pred hccCCCCCccEEEeCCCCCCCchhhHHHHHH---HhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHc
Q 026442 82 ERIKELPPLDIFVTTADPYLEPPILTVNTVL---SLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKY 158 (238)
Q Consensus 82 ~~~~~lP~VDVFI~T~np~~EP~~~v~~Tvl---s~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~ 158 (238)
-..+-+--|..|||| |.+.-|.--+. ..+|--=-.+++-+||+-|.+.+. -++.|...|++ +|++.
T Consensus 140 --~p~~hrTAilmPiyn---Ed~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpd--ialAEq~a~~~----l~~e~ 208 (736)
T COG2943 140 --LPDLHRTAILMPIYN---EDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPD--IALAEQKAWAE----LCREL 208 (736)
T ss_pred --CCcccceeEEeeccc---cCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCch--hhhhHHHHHHH----HHHHh
Confidence 122334669999999 98876543322 233333345789999999999885 35667666666 89888
Q ss_pred CCcc
Q 026442 159 NIRV 162 (238)
Q Consensus 159 ~v~~ 162 (238)
+-+-
T Consensus 209 ~g~~ 212 (736)
T COG2943 209 GGEG 212 (736)
T ss_pred CCCC
Confidence 7443
No 59
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=93.73 E-value=0.15 Score=38.07 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=39.8
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa 145 (238)
|.||++| + ...+..|+.+++..+|+ ...++++|||.++.+...+.+..
T Consensus 1 iii~~~~---~-~~~l~~~l~s~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~ 48 (156)
T cd00761 1 VIIPAYN---E-EPYLERCLESLLAQTYP--NFEVIVVDDGSTDGTLEILEEYA 48 (156)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCcc--ceEEEEEeCCCCccHHHHHHHHH
Confidence 5799999 6 46778999999999995 67899999999988777666554
No 60
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=93.60 E-value=0.085 Score=44.14 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=35.0
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCC--CCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDY--PAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DY--P~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||+|| |. ..+..++-+++...+ +.....|+|.|||.++-|..-+.+
T Consensus 1 iiip~yN---~~-~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~ 50 (211)
T cd04188 1 VVIPAYN---EE-KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARK 50 (211)
T ss_pred CEEcccC---hH-HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHH
Confidence 6799999 76 455667777666544 444789999999999877654443
No 61
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=93.32 E-value=0.15 Score=41.39 Aligned_cols=47 Identities=21% Similarity=0.140 Sum_probs=31.3
Q ss_pred EEEeCCCCCCCchhh--HHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 92 IFVTTADPYLEPPIL--TVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 92 VFI~T~np~~EP~~~--v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
|.||||| |+-.+ +..++.+.+.-.++ .+.|+|.|||.++-|.+.+.+
T Consensus 1 viIp~~n---~~~~l~~~l~sl~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~ 49 (181)
T cd04187 1 IVVPVYN---EEENLPELYERLKAVLESLGY--DYEIIFVDDGSTDRTLEILRE 49 (181)
T ss_pred CEEeecC---chhhHHHHHHHHHHHHHhcCC--CeEEEEEeCCCCccHHHHHHH
Confidence 6799999 66332 34445444333344 679999999999877665444
No 62
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=91.21 E-value=0.38 Score=44.46 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=37.2
Q ss_pred CCCccEEEeCCCCCCCchhh--HHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHH
Q 026442 87 LPPLDIFVTTADPYLEPPIL--TVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS 145 (238)
Q Consensus 87 lP~VDVFI~T~np~~EP~~~--v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa 145 (238)
.+.|.|.||+|| |...+ +...+.+++.-- .....|.|.|||.++-|.+-+.+.+
T Consensus 5 ~~~vSVVIP~yN---E~~~i~~~l~~l~~~~~~~--~~~~EIIvVDDgS~D~T~~il~~~~ 60 (325)
T PRK10714 5 IKKVSVVIPVYN---EQESLPELIRRTTAACESL--GKEYEILLIDDGSSDNSAEMLVEAA 60 (325)
T ss_pred CCeEEEEEcccC---chhhHHHHHHHHHHHHHhC--CCCEEEEEEeCCCCCcHHHHHHHHH
Confidence 467999999999 76443 344444443211 1357899999999998888766643
No 63
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=88.01 E-value=0.83 Score=39.23 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=31.7
Q ss_pred ccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhh
Q 026442 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY 139 (238)
Q Consensus 90 VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~ 139 (238)
|.|.||||| |.. .+..|+.|+... . + .|+|.|||.++-|.+
T Consensus 2 isvii~~~N---e~~-~l~~~l~sl~~~--~-~--eiivvD~gStD~t~~ 42 (229)
T cd02511 2 LSVVIITKN---EER-NIERCLESVKWA--V-D--EIIVVDSGSTDRTVE 42 (229)
T ss_pred EEEEEEeCC---cHH-HHHHHHHHHhcc--c-C--EEEEEeCCCCccHHH
Confidence 679999999 764 578888887654 1 2 799999999987654
No 64
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=87.13 E-value=1.1 Score=42.31 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=35.3
Q ss_pred cEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCch
Q 026442 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPL 136 (238)
Q Consensus 91 DVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~ 136 (238)
=|.|.+|| -++.+.+|+-|++...+-.++..+||++||.+..
T Consensus 3 PVlv~ayN----Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~ 44 (334)
T cd02514 3 PVLVIACN----RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE 44 (334)
T ss_pred CEEEEecC----CHHHHHHHHHHHHhccccCCCceEEEEeCCCchH
Confidence 37899999 4688999999999987445788999999999864
No 65
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=81.14 E-value=2.2 Score=35.75 Aligned_cols=37 Identities=14% Similarity=-0.041 Sum_probs=29.7
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCch
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPL 136 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~ 136 (238)
+.||||| |....+.+|+-|+++- ...|.|.|||..+.
T Consensus 1 ~vI~~yn---~~~~~l~~~l~sl~~q-----~~~iivvDn~s~~~ 37 (237)
T cd02526 1 AVVVTYN---PDLSKLKELLAALAEQ-----VDKVVVVDNSSGND 37 (237)
T ss_pred CEEEEec---CCHHHHHHHHHHHhcc-----CCEEEEEeCCCCcc
Confidence 4699999 8889999999998875 34688888876553
No 66
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=79.08 E-value=4.2 Score=36.76 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=43.4
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEA 144 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~ea 144 (238)
|.+=+.|.||| +.+.+.+++-+..+.+||.+ .+.+.|+|.++.+.+.+.+.
T Consensus 3 ~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~ 53 (305)
T COG1216 3 PKISIIIVTYN----RGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKAR 53 (305)
T ss_pred cceEEEEEecC----CHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhh
Confidence 66788999999 77889999999999999965 55589999999888876664
No 67
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=77.61 E-value=5.2 Score=37.63 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=39.1
Q ss_pred CccEEEeCCCCCCCchhh---HHHHHHHhhccCCCC---CcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCCc
Q 026442 89 PLDIFVTTADPYLEPPIL---TVNTVLSLLAVDYPA---HRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIR 161 (238)
Q Consensus 89 ~VDVFI~T~np~~EP~~~---v~~Tvls~la~DYP~---~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v~ 161 (238)
..-|.||.|| ||--+ +-.|+-. +.=.|-. =.-.+-|+|||..+.|.+...+ ||+|+|.+
T Consensus 68 ~lsVIVpayn---E~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k----------~s~K~~~d 132 (323)
T KOG2977|consen 68 YLSVIVPAYN---EEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVEVALK----------FSRKLGDD 132 (323)
T ss_pred eeEEEEecCC---cccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHHHHHH----------HHHHcCcc
Confidence 6789999999 77433 3333332 2223333 2456899999999988775443 88888854
No 68
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=72.48 E-value=5.5 Score=40.02 Aligned_cols=43 Identities=21% Similarity=0.088 Sum_probs=36.7
Q ss_pred CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCC-CcceEEEcC
Q 026442 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPA-HRLACYVSD 130 (238)
Q Consensus 85 ~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~-~kl~vYv~D 130 (238)
..++.+=.+||+|+ |..+-+.+|+-|+...|||. .|+=+.|||
T Consensus 22 ~~~~~~i~~v~cy~---E~~~~l~~tldsl~~~~y~~~~k~~~vi~D 65 (527)
T PF03142_consen 22 FPDKFVICLVPCYS---EGEEELRTTLDSLATTDYDDSRKLIFVICD 65 (527)
T ss_pred CCCceEEEEEcccc---CChHHHHHHHHHHHhcCCCCcccEEEEEcC
Confidence 34566778999999 99999999999999999998 577777776
No 69
>COG3095 MukE Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=57.24 E-value=14 Score=32.74 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCc-ccCCccccccCCC
Q 026442 146 KFAKLWVPFCKKYNIR-VRAPFRYFLRESD 174 (238)
Q Consensus 146 ~Fa~~wvpFC~k~~v~-~r~P~~YF~~~~~ 174 (238)
.|....-.|-++|+|| .|||+.||-.-|.
T Consensus 47 dfq~~l~~fy~rynvelirapegffylrpr 76 (238)
T COG3095 47 DFQEYLEEFYARYNVELIRAPEGFFYLRPR 76 (238)
T ss_pred hhHHHHHHHHHHhhhhheecCCceeEeccc
Confidence 5777778899999999 9999999976654
No 70
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=56.67 E-value=22 Score=33.62 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=33.8
Q ss_pred CccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCC
Q 026442 89 PLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNI 160 (238)
Q Consensus 89 ~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v 160 (238)
.||||+|.++ . +.++.-.=++-+.-+++-+ ..+..++.-+..-.+|.+ +|+++||
T Consensus 66 ~Idv~~P~~~---~-------~~l~~~r~~F~a~Gv~l~~---~~~~~~l~~~~dK~~~y~----~~~~~~i 120 (329)
T PF15632_consen 66 GIDVFVPGRN---R-------ELLAAHRDEFEALGVKLLT---ASSAETLELADDKAAFYE----FMEANGI 120 (329)
T ss_pred CCeEEEcCcc---H-------HHHHHHHHHHHHhCCEEEe---cCCHHHHHHHhhHHHHHH----HHHhCCC
Confidence 5999999998 2 2244333333333445555 334555555555567777 9999998
No 71
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=56.52 E-value=11 Score=37.10 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCC-CcceEEEcCCCCCchhh
Q 026442 85 KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPA-HRLACYVSDDGCSPLNF 138 (238)
Q Consensus 85 ~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~-~kl~vYv~DDG~s~~t~ 138 (238)
...|.+-|.|=+|| -|..+.+|+-+++... |. ++..++||.||+...+.
T Consensus 90 ~~~~~~pVlV~AcN----Rp~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~~~ 139 (434)
T PF03071_consen 90 NKEPVIPVLVFACN----RPDYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEEVA 139 (434)
T ss_dssp -------EEEEESS-----TT-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HHHH
T ss_pred cCCCcceEEEEecC----CcHHHHHHHHHHHHcC-CCCCCccEEEEecCCcHHHH
Confidence 45678889999999 5577999999999988 65 78999999999876443
No 72
>PF06853 DUF1249: Protein of unknown function (DUF1249); InterPro: IPR009659 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=52.82 E-value=19 Score=29.13 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCc
Q 026442 141 LVEASKFAKLWVPFCKKYNIR 161 (238)
Q Consensus 141 l~eaa~Fa~~wvpFC~k~~v~ 161 (238)
-.+...|...|+-||-++|..
T Consensus 97 K~q~N~FL~eWL~~CL~~G~~ 117 (120)
T PF06853_consen 97 KWQLNRFLAEWLRYCLRHGHS 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHcCCc
Confidence 455678999999999999954
No 73
>PRK11039 putative dehydrogenase; Provisional
Probab=49.49 E-value=20 Score=30.11 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 026442 142 VEASKFAKLWVPFCKKYNIR 161 (238)
Q Consensus 142 ~eaa~Fa~~wvpFC~k~~v~ 161 (238)
.+...|...|+-||-++|+.
T Consensus 116 ~Q~N~FL~eWL~~CL~~G~~ 135 (140)
T PRK11039 116 HQINQFLADWLRYCLAHGAM 135 (140)
T ss_pred HHHHHHHHHHHHHHHhcCcc
Confidence 55678999999999999955
No 74
>PRK05256 condesin subunit E; Provisional
Probab=49.39 E-value=29 Score=31.50 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCc-ccCCccccccCCC
Q 026442 146 KFAKLWVPFCKKYNIR-VRAPFRYFLRESD 174 (238)
Q Consensus 146 ~Fa~~wvpFC~k~~v~-~r~P~~YF~~~~~ 174 (238)
.|-...-.|-+|++++ .|||+.||=.-|.
T Consensus 49 d~q~~L~~FY~ry~~eLi~aPEgffYLrP~ 78 (238)
T PRK05256 49 DFQEELEEFYRRYNVELIRAPEGFFYLRPR 78 (238)
T ss_pred HHHHHHHHHHHHhceeEEEcCCceEEeccc
Confidence 3555666899999999 9999999987665
No 75
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=45.08 E-value=13 Score=18.87 Aligned_cols=9 Identities=44% Similarity=0.682 Sum_probs=7.1
Q ss_pred EEcCCCCCc
Q 026442 127 YVSDDGCSP 135 (238)
Q Consensus 127 Yv~DDG~s~ 135 (238)
|.|+|||..
T Consensus 1 ~~S~D~G~T 9 (12)
T PF02012_consen 1 YYSTDGGKT 9 (12)
T ss_dssp EEESSTTSS
T ss_pred CEeCCCccc
Confidence 689999863
No 76
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=43.98 E-value=32 Score=32.30 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCcccC
Q 026442 150 LWVPFCKKYNIRVRA 164 (238)
Q Consensus 150 ~wvpFC~k~~v~~r~ 164 (238)
..+.||+++||.+.|
T Consensus 192 ~L~~fCk~~~I~v~A 206 (300)
T KOG1577|consen 192 KLVEFCKSKGIVVTA 206 (300)
T ss_pred HHHHHHhhCCcEEEE
Confidence 477899999999766
No 77
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=43.65 E-value=27 Score=31.42 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=31.4
Q ss_pred ccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhh
Q 026442 90 LDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFY 139 (238)
Q Consensus 90 VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~ 139 (238)
-.|.+|||| |-..+-.-|=+=+-.++--..+..+.+.||+.-+=|.+
T Consensus 5 YsvilPtYn---Ek~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~ 51 (238)
T KOG2978|consen 5 YSVILPTYN---EKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQE 51 (238)
T ss_pred eeEEecccc---CCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHH
Confidence 468999999 76665544443344444334577899999987766655
No 78
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.72 E-value=30 Score=34.30 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=41.7
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhh
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNF 138 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~ 138 (238)
..++|.-.|.|+-.| |-...+.+||.|++.-.=+.=-.-+.+.||+..+.+.
T Consensus 120 ~~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped 171 (559)
T KOG3738|consen 120 KVDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPED 171 (559)
T ss_pred ecCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHH
Confidence 457999999999999 9999999999999986533223458888999887543
No 79
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=38.67 E-value=23 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=29.3
Q ss_pred eEEEcCCCCCchhhhh----HHHHHHHHHHHHHHHHHcCCcccC
Q 026442 125 ACYVSDDGCSPLNFYS----LVEASKFAKLWVPFCKKYNIRVRA 164 (238)
Q Consensus 125 ~vYv~DDG~s~~t~~a----l~eaa~Fa~~wvpFC~k~~v~~r~ 164 (238)
++.|+|||.+...+.. +....+..+.+.-.+.+|||+-..
T Consensus 21 ~~~ltDdG~Tl~~L~~~G~~~~~s~~R~~~l~~il~~~gv~~~~ 64 (90)
T PF08861_consen 21 SIRLTDDGYTLMNLSSSGIDIDRSKKRKKILNSILNGFGVELDE 64 (90)
T ss_pred eEEEecCHHHHHhHhHcCCccccchHHHHHHHHHHHHcCccccC
Confidence 6789999998877764 222345556777899999998655
No 80
>COG3151 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.70 E-value=46 Score=28.05 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=24.1
Q ss_pred cCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCCc
Q 026442 117 VDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIR 161 (238)
Q Consensus 117 ~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v~ 161 (238)
+|||..|++. .+.-..-..|...|+-||-+||..
T Consensus 107 y~ypn~~~hq-----------~dek~q~N~FLgdWL~ycla~G~~ 140 (147)
T COG3151 107 YDYPNKKLHQ-----------RDEKHQINQFLGDWLRYCLAHGHM 140 (147)
T ss_pred cCCCCccccC-----------ccHHHHHHHHHHHHHHHHHHcCCc
Confidence 5999765542 122334467999999999999965
No 81
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=35.54 E-value=19 Score=32.39 Aligned_cols=41 Identities=32% Similarity=0.548 Sum_probs=30.2
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHcCCcccCCccccccC
Q 026442 132 GCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRE 172 (238)
Q Consensus 132 G~s~~t~~al~eaa~Fa~~wvpFC~k~~v~~r~P~~YF~~~ 172 (238)
|.++...+++...-+==+..||+|+|-.|..+-|...|-++
T Consensus 77 gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~ 117 (227)
T KOG3177|consen 77 GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKAD 117 (227)
T ss_pred CCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceee
Confidence 55677777655544444568999999999999997776554
No 82
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=33.57 E-value=97 Score=29.06 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=39.7
Q ss_pred EeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCch--------hhhhHHHHHHHHH
Q 026442 94 VTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPL--------NFYSLVEASKFAK 149 (238)
Q Consensus 94 I~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~--------t~~al~eaa~Fa~ 149 (238)
|.+-+|..|+++.+..-|..+..+= |.+ ++||+-|-|-.. ++.+|.++++.++
T Consensus 275 vd~k~~~lE~~e~I~~rI~~a~~~v-~~~--~l~lspdCGf~~l~~~~a~~KL~~l~~~a~~~~ 335 (339)
T PRK09121 275 IDVASDTIETPEEVADTLRKALQFV-DAD--KLYPCTNCGMAPLSRDVARGKLNALSAGAEIVR 335 (339)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHhC-CHH--HEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998876643 556 899999988542 2335666665554
No 83
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=33.21 E-value=29 Score=24.55 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=17.5
Q ss_pred hhccCCCCCcceEEEcCCCC
Q 026442 114 LLAVDYPAHRLACYVSDDGC 133 (238)
Q Consensus 114 ~la~DYP~~kl~vYv~DDG~ 133 (238)
++-|||=.++|+|.+=|||.
T Consensus 34 ~vTmDyr~dRLnv~~D~~g~ 53 (60)
T PF11720_consen 34 AVTMDYRPDRLNVEVDDDGV 53 (60)
T ss_pred cCcccCCCCcEEEEECCCCc
Confidence 67899999999999988763
No 84
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=30.51 E-value=78 Score=21.61 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCcccC
Q 026442 137 NFYSLVEASKFAKLWVPFCKKYNIRVRA 164 (238)
Q Consensus 137 t~~al~eaa~Fa~~wvpFC~k~~v~~r~ 164 (238)
--.|+.|+.+.++.=..|=++|||.|++
T Consensus 10 M~~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 10 MQKAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3467889998888888999999999876
No 85
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=29.85 E-value=86 Score=28.02 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=34.0
Q ss_pred cEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCC
Q 026442 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNI 160 (238)
Q Consensus 91 DVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v 160 (238)
-||+...|..-.+ .+..++.|++.-. ..++++||++||=+......+.+ +|+++|.
T Consensus 2 ni~~~~~~~~y~~--~~~v~l~Sll~nn--~~~~~fyil~~~is~e~~~~l~~----------~~~~~~~ 57 (248)
T cd06432 2 NIFSVASGHLYER--FLRIMMLSVMKNT--KSPVKFWFIKNFLSPQFKEFLPE----------MAKEYGF 57 (248)
T ss_pred eEEEEcCcHHHHH--HHHHHHHHHHHcC--CCCEEEEEEeCCCCHHHHHHHHH----------HHHHhCC
Confidence 4666655422222 3456666666543 36899999999988755554443 5666654
No 86
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=29.54 E-value=1.1e+02 Score=27.21 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=25.2
Q ss_pred EEEeCCCCCCCchhhHHHHHHHh-hccCC--CCCcceEEEcCCCCCchhhh
Q 026442 92 IFVTTADPYLEPPILTVNTVLSL-LAVDY--PAHRLACYVSDDGCSPLNFY 139 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~-la~DY--P~~kl~vYv~DDG~s~~t~~ 139 (238)
|.||..+-.. ...+ ...+.+| ..+++ +...+.|.|.|||.+..+-+
T Consensus 2 iIIPv~~~~~-~~~i-~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~ 50 (281)
T PF10111_consen 2 IIIPVRNRSE-RPDI-LERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDE 50 (281)
T ss_pred EEEEecCCcc-chHH-HHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHH
Confidence 6788888222 2222 2222222 12222 23588999999998876433
No 87
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=27.97 E-value=28 Score=27.55 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=36.5
Q ss_pred CcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCCcccCCccccccC
Q 026442 122 HRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRE 172 (238)
Q Consensus 122 ~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v~~r~P~~YF~~~ 172 (238)
+|++.=|+|++++.+-| .+..+..|.+..-.|||+.|-+--+=---|+.+
T Consensus 23 ~hinLkvv~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~ 72 (103)
T COG5227 23 KHINLKVVDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGK 72 (103)
T ss_pred cccceEEecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcce
Confidence 58899999999998744 456667888888899999995544433445443
No 88
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=27.42 E-value=46 Score=26.98 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=26.2
Q ss_pred EEEcCCCCCchhhh--hHHHHHHHH-HHHHHHHHHcCCcccCCcc
Q 026442 126 CYVSDDGCSPLNFY--SLVEASKFA-KLWVPFCKKYNIRVRAPFR 167 (238)
Q Consensus 126 vYv~DDG~s~~t~~--al~eaa~Fa-~~wvpFC~k~~v~~r~P~~ 167 (238)
+-.+-||.+...=. .+..+-.-. +..+.+|++-|+|||.|.+
T Consensus 26 ~~g~~~~~~f~~~sv~~lk~~~~~s~~~yle~C~~~g~EP~k~~S 70 (111)
T COG4226 26 FVGLSGVIDFQGDSVKGLKKEGELSLDDYLEFCKERGIEPRKPYS 70 (111)
T ss_pred ccccccccCchhhhHHHHHHHHHhhHHHHHHHHHHcCCCCccccC
Confidence 44566777654221 233322222 3577899999999999966
No 89
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=27.06 E-value=71 Score=27.94 Aligned_cols=31 Identities=16% Similarity=-0.051 Sum_probs=23.4
Q ss_pred CCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCC
Q 026442 96 TADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCS 134 (238)
Q Consensus 96 T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s 134 (238)
|||| +.+.+.+++.|++.-. ..|+|.|||.+
T Consensus 2 tyn~---~~~~l~~~l~sl~~q~-----~~iiVVDN~S~ 32 (281)
T TIGR01556 2 TFNP---DLEHLGELITSLPKQV-----DRIIAVDNSPH 32 (281)
T ss_pred ccCc---cHHHHHHHHHHHHhcC-----CEEEEEECcCC
Confidence 8994 3567888888877642 37999999964
No 90
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=26.13 E-value=1.1e+02 Score=28.06 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCc
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~ 135 (238)
++| |+|-+|..|.++.+...|..++.+ -|.+ +++++.|-|-.
T Consensus 263 lGv---v~~~~~~vE~~e~v~~ri~~a~~~-~~~~--~l~~sPdCGfa 304 (324)
T PF01717_consen 263 LGV---VDTKSPEVESPEEVADRIEEALEY-VPLE--QLWLSPDCGFA 304 (324)
T ss_dssp EEE---S-TTSSS--THHHHHHHHHHHHTT-S-GG--GEEEEESSTST
T ss_pred EEE---EcCCCCCcCCHHHHHHHHHHHHhc-Cccc--cEEEcCCCCCC
Confidence 555 899999999999999999888877 5555 67999997754
No 91
>PF00715 IL2: Interleukin 2 This family is a subset of the SCOP family.; InterPro: IPR000779 T-Lymphocytes regulate the growth and differentiation of certain lymphopoietic and haemopoietic cells through the release of various secreted protein factors []. These factors, which include interleukin-2 (IL2), are secreted by lectin- or antigen-stimulated T-cells, and have various physiological effects. IL2 is a lymphokine that induces the proliferation of responsive T-cells. In addition, it acts on some B-cells, via receptor-specific binding [], as a growth factor and antibody production stimulant []. The protein is secreted as a single glycosylated polypeptide, and cleavage of a signal sequence is required for its activity []. Solution NMR suggests that the structure of IL2 comprises a bundle of 4 helices (termed A-D), flanked by 2 shorter helices and several poorly-defined loops. Residues in helix A, and in the loop region between helices A and B, are important for receptor binding. Secondary structure analysis has suggested similarity to IL4 and granulocyte-macrophage colony stimulating factor (GMCSF) [].; GO: 0005134 interleukin-2 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3QAZ_M 2B5I_A 1Z92_A 3QB1_F 2ERJ_H 1NBP_A 1PY2_C 1IRL_A 1QVN_A 3INK_C ....
Probab=25.11 E-value=57 Score=27.43 Aligned_cols=13 Identities=31% Similarity=1.081 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 026442 145 SKFAKLWVPFCKK 157 (238)
Q Consensus 145 a~Fa~~wvpFC~k 157 (238)
.+|.+.|+-||++
T Consensus 130 veFln~WItFCQs 142 (145)
T PF00715_consen 130 VEFLNKWITFCQS 142 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999999986
No 92
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=75 Score=31.64 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=35.7
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcc-eEEEcCCCCC
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRL-ACYVSDDGCS 134 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl-~vYv~DDG~s 134 (238)
+++||++.|.|--.| |--..+++||-|++.-. |.+-+ .|.+.||=..
T Consensus 151 pe~Lpt~SVviVFHN---EGws~LmRTVHSVi~Rs-P~~~l~eivlvDDfSd 198 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRS-PRKYLAEIVLVDDFSD 198 (603)
T ss_pred cccCCcceEEEEEec---CccHHHHHHHHHHHhcC-cHHhhheEEEeccCCc
Confidence 678999999999999 99999999999988654 43333 3455555333
No 93
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=23.61 E-value=2e+02 Score=26.88 Aligned_cols=52 Identities=21% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
..++|..++=+-...+..+++.+|+. -+ |...+++||++||-+......+.+
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~---nn-~~~~~~f~Il~~~is~e~~~~l~~ 75 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLL---NN-PDKSLVFHVFTDYISDADKQRFSA 75 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHH---hC-CCCCEEEEEEeCCCCHHHHHHHHH
Confidence 67999888766555555555555443 22 445799999999998876665543
No 94
>PRK03001 M48 family peptidase; Provisional
Probab=23.36 E-value=5.4e+02 Score=23.22 Aligned_cols=11 Identities=18% Similarity=0.473 Sum_probs=7.3
Q ss_pred CCCCCccEEEe
Q 026442 85 KELPPLDIFVT 95 (238)
Q Consensus 85 ~~lP~VDVFI~ 95 (238)
..+|.-+|+|-
T Consensus 80 ~g~~~p~v~v~ 90 (283)
T PRK03001 80 AGLPMPKVYLI 90 (283)
T ss_pred cCCCCCeEEEe
Confidence 45677777774
No 95
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=43 Score=34.21 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=39.7
Q ss_pred cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchh
Q 026442 84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLN 137 (238)
Q Consensus 84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t 137 (238)
.+.+|++-|.||-+| |-..++.+||-|...--=|.---.+.|.||+.....
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~ 188 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDH 188 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcchhh
Confidence 356999999999999 999999999998776554433445778888766543
No 96
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=23.34 E-value=30 Score=25.05 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCcccCCcccccc
Q 026442 150 LWVPFCKKYNIRVRAPFRYFLR 171 (238)
Q Consensus 150 ~wvpFC~k~~v~~r~P~~YF~~ 171 (238)
+-+.+|+++|..-+.|..|.+.
T Consensus 50 ~PvGw~~~~g~~L~pP~~~~~~ 71 (73)
T PF02820_consen 50 FPVGWCEKNGHPLQPPKGYRSK 71 (73)
T ss_dssp EETTHHHHHT-EEE-STTCSST
T ss_pred eecchHHhcCCcccCCCCCccC
Confidence 4568999999999999998754
No 97
>PRK03982 heat shock protein HtpX; Provisional
Probab=23.28 E-value=4.1e+02 Score=24.07 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHhhhhhcccccCCCCccchhhc------cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcC
Q 026442 59 VWVLITGTKWTPISYNTYPQRLQER------IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSD 130 (238)
Q Consensus 59 ~wll~~~~~~~P~~R~~~~~~L~~~------~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~D 130 (238)
.|+.-.+.+.+|+.+...|+ |... ...+|.-+|+|--.+ +| -|.+.-....+-.|.|+|
T Consensus 50 ~~i~~~~~~~~~l~~~~~p~-L~~~v~~la~~~g~~~p~v~v~~~~---~~---------NAfa~G~~~~~~~V~vt~ 114 (288)
T PRK03982 50 DKIVLASYNARIVSEEEAPE-LYRIVERLAERANIPKPKVAIVPTQ---TP---------NAFATGRDPKHAVVAVTE 114 (288)
T ss_pred HHHHHHhcCCEECChhhhHH-HHHHHHHHHHHcCCCCCeEEEEeCC---Cc---------ceEEeccCCCCeEEEeeh
Confidence 44445566788887665543 2221 345677788774322 32 255555544444555554
No 98
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=22.85 E-value=1e+02 Score=28.08 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=34.0
Q ss_pred chhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHH----------------HHHHHHHHHHHHcCCc
Q 026442 103 PPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEAS----------------KFAKLWVPFCKKYNIR 161 (238)
Q Consensus 103 P~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa----------------~Fa~~wvpFC~k~~v~ 161 (238)
|++.+.+ ++-.||+ |=-+.|+.+++||.+-++....+.+.. +=-+..+.+|+++||+
T Consensus 16 ~~~~ik~-~id~ma~-~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~ 88 (351)
T PF00728_consen 16 SVDTIKR-LIDQMAY-YKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIE 88 (351)
T ss_dssp -HHHHHH-HHHHHHH-TT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-E
T ss_pred CHHHHHH-HHHHHHH-cCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCc
Confidence 3344444 4445555 545689999999977776554433222 2234688899999998
No 99
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=22.82 E-value=32 Score=35.57 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=33.9
Q ss_pred EeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCc
Q 026442 94 VTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (238)
Q Consensus 94 I~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~ 135 (238)
..++. |+.++|.+..-++.-.|||.+|+.=.|+-||...
T Consensus 323 ~~~~p---e~aIlVarel~aa~L~e~Pr~rL~GvVl~dGaan 361 (756)
T COG3605 323 ANAWP---EDAILVARELGAAELLEYPRDRLRGVVLEDGAAN 361 (756)
T ss_pred hhcCC---cceEEEecccCHHHHhhCchhhheeeeeecCccc
Confidence 34555 8888888889999999999999999999999875
No 100
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=22.72 E-value=48 Score=26.38 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.8
Q ss_pred CCCCCcceEEEcCCCCCc
Q 026442 118 DYPAHRLACYVSDDGCSP 135 (238)
Q Consensus 118 DYP~~kl~vYv~DDG~s~ 135 (238)
-|+ -+||.||||+..
T Consensus 30 G~~---AsCYtC~dG~~~ 44 (105)
T PF08844_consen 30 GYL---ASCYTCGDGRDM 44 (105)
T ss_pred Cce---eEEEecCCCCCC
Confidence 566 379999999864
No 101
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=22.32 E-value=1.5e+02 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=29.6
Q ss_pred EeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCc
Q 026442 94 VTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSP 135 (238)
Q Consensus 94 I~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~ 135 (238)
|.+.+|..|+++.+.+-|..++.+= |.+ +++|+.|-|-.
T Consensus 302 vd~~~~~vE~~e~I~~rI~~a~~~v-~~~--~l~lspdCGf~ 340 (368)
T PRK06520 302 ITTKNGELENADDVKARLAEAAKFV-PLE--QLCLSPQCGFA 340 (368)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHhC-CHH--HEeeCcccCCC
Confidence 7788888888888888887765543 545 58888888755
No 102
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=21.98 E-value=5.8e+02 Score=22.86 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=45.5
Q ss_pred EEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHHHHHHHcCCc
Q 026442 92 IFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIR 161 (238)
Q Consensus 92 VFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wvpFC~k~~v~ 161 (238)
|+|||-. ..|-++--|+-+..+-.++.+.+.|.=..||...+...-+ ...+.-||+.|+..
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll------~g~~~~l~~~y~~~ 64 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL------DGGLQRLCQDYYLP 64 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH------HHHHHHHHHhhcCC
Confidence 7899999 8889999999999999988897777767776665433323 11244599999864
No 103
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=21.30 E-value=1.9e+02 Score=26.44 Aligned_cols=44 Identities=18% Similarity=0.032 Sum_probs=27.9
Q ss_pred EEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhH
Q 026442 93 FVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSL 141 (238)
Q Consensus 93 FI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al 141 (238)
.|++++-. ...++.|+.|++.- ....+++||.+||-+...+..+
T Consensus 5 iv~~~~~y---~~~~~~~i~Sil~n--~~~~~~fhii~d~~s~~~~~~l 48 (280)
T cd06431 5 IVCAGYNA---SRDVVTLVKSVLFY--RRNPLHFHLITDEIARRILATL 48 (280)
T ss_pred EEEccCCc---HHHHHHHHHHHHHc--CCCCEEEEEEECCcCHHHHHHH
Confidence 35555522 34556677777554 3456899999998876655443
No 104
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=20.82 E-value=1.3e+02 Score=26.01 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=24.7
Q ss_pred cEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHH
Q 026442 91 DIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVE 143 (238)
Q Consensus 91 DVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~e 143 (238)
.|++|+=+....+..++.++++. .-+.+.+++||+.||-++.....|.+
T Consensus 2 ~I~~~~d~~y~~~~~~~l~Sl~~----~~~~~~~~~~il~~~is~~~~~~L~~ 50 (248)
T cd04194 2 NIVFAIDDNYAPYLAVTIKSILA----NNSKRDYDFYILNDDISEENKKKLKE 50 (248)
T ss_pred CEEEEecHhhHHHHHHHHHHHHh----cCCCCceEEEEEeCCCCHHHHHHHHH
Confidence 45555544333333333333332 22224677787777766655554444
No 105
>smart00189 IL2 Interleukin-2 family. Interleukin-2 is a cytokine produced by T-helper cells in response to antigenic or mitogenic stimulation. This protein is required for T-cell proliferation and other activities crucial to the regulation of the immune response.
Probab=20.68 E-value=68 Score=27.07 Aligned_cols=13 Identities=31% Similarity=1.083 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 026442 145 SKFAKLWVPFCKK 157 (238)
Q Consensus 145 a~Fa~~wvpFC~k 157 (238)
-+|...|+.||+.
T Consensus 136 vEFLn~WItfCQs 148 (154)
T smart00189 136 VEFLNRWIAFCQS 148 (154)
T ss_pred HHHHHHHHHHHHH
Confidence 4799999999986
No 106
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=20.57 E-value=88 Score=21.57 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=9.5
Q ss_pred HHHH-HHHHHcCCc
Q 026442 149 KLWV-PFCKKYNIR 161 (238)
Q Consensus 149 ~~wv-pFC~k~~v~ 161 (238)
+-|+ -|+++|++.
T Consensus 50 ~~Wl~rF~~Rh~~~ 63 (66)
T smart00674 50 NGWLTRFKKRHNIV 63 (66)
T ss_pred HHHHHHHHHHcCCc
Confidence 4577 788888865
Done!