BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026443
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
Length = 262
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 54 ISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRS 113
+ST ++ L+ Q++EWN+R +S+ HA+ + LY + ++ D + P+ +
Sbjct: 30 LSTRLTGGFHKLSARQKIEWNSRTVSSFHALVVGCFCLYIL----VYDDAVNADPV-WGD 84
Query: 114 SWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YT 171
++ + V+ GY ++DL +I + + +G +V HH + A Y + GEG L +
Sbjct: 85 PFMVKLNVAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVL--GEGMLPYFG 142
Query: 172 YMVLISEVTTPEINMRWYLDTAG-MKRSTTYLVNGVIIFFAWLIARI 217
LI+E +TP +N RW+ + G K S +VNGV++ ++ I RI
Sbjct: 143 NFRLIAEFSTPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRI 189
>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1
Length = 276
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 89/172 (51%), Gaps = 6/172 (3%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
YN L+ +++EWN+R +ST H++ + LY F F + T P+ +++ N
Sbjct: 50 GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFF----FDEATITDPLWGDPTYV-NIN 104
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
+ + GY ++DL +I + + +G +++HH A + + +G L++E++
Sbjct: 105 IATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELS 164
Query: 181 TPEINMRWYLDTAGMKR-STTYLVNGVIIFFAWLIARILLFVYMFYHVYLHY 231
+P +N RW+ + + S ++NG+++ + I RI+ M++ +Y Y
Sbjct: 165 SPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVY 216
>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1
Length = 264
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
++ ++S+ + + Y L + +WN+R +STVHA+ I L Y+ W D D + P+
Sbjct: 23 VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78
Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
+ L + ++ GY DL ++ + ++G + +V HH + A Y + G
Sbjct: 79 -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137
Query: 170 YTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLV-NGVIIFFAWLIARI 217
+ LISE++TP +N RW+ + R+ +V NG+ + + + RI
Sbjct: 138 FANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRI 186
>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1
Length = 258
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 7/191 (3%)
Query: 29 DPFIPYTSILAGLLACKVVYD-LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFIT 87
D I Y + L ++++ ++ + T Y Y L+ ++ EW++R +ST HA+ +
Sbjct: 3 DVLISYCVVTGSFLGFQLLFSAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNHALIVG 62
Query: 88 ALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEY 147
+ LY + + D + PI W+ + ++ GY + DL ++ + +
Sbjct: 63 SACLYIL----AYDDAVNADPIWGDPFWV-KMNVAITCGYLVQDLLLLARFWKVMRDPYM 117
Query: 148 VVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRST-TYLVNGV 206
V HH + Y + G + LISE++TP +N RW+ D G RS+ L+NG+
Sbjct: 118 VCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGL 177
Query: 207 IIFFAWLIARI 217
+ + I RI
Sbjct: 178 AMALVFFIVRI 188
>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1
Length = 263
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
+N L+ +++EWN+R +ST H++ + L Y+F LF + P+ S L+N
Sbjct: 37 GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGL-YIF---LFDEATKADPLWGGPS-LANVN 91
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
+ ++ GY ++DL +I + +G +++HH S A + +G L++E++
Sbjct: 92 IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151
Query: 181 TPEINMRWYLDTAGMKR-STTYLVNGVIIFFAWLIARI 217
+P +N RW+ + + S ++NG+++ + I RI
Sbjct: 152 SPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRI 189
>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1
Length = 259
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 7/189 (3%)
Query: 31 FIPYTSILAGLLACKVVYDLTQLIS-TFYFKAYNGLTKIQRMEWNNRGISTVHAIFITAL 89
FI Y + L ++++ + + T Y Y L+ ++ EW++R +ST HA+ + +
Sbjct: 6 FISYCVVTGSFLGFQLLFSIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVVGSG 65
Query: 90 SLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVV 149
LY + + + + PI W+ + ++ GY + DL ++ + + V
Sbjct: 66 CLYIL----AYDEAVNADPIWGDPFWV-KMNVAITCGYLVHDLLLLARFWKVMRDPYMVC 120
Query: 150 HHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRST-TYLVNGVII 208
HH + Y + G + LISE++TP +N RW+ D G RS+ L+NG+ +
Sbjct: 121 HHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGLAM 180
Query: 209 FFAWLIARI 217
+ I RI
Sbjct: 181 ALVFFIVRI 189
>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56b PE=3 SV=1
Length = 257
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 100/188 (53%), Gaps = 15/188 (7%)
Query: 37 ILAGLLACKVVYD-----LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSL 91
IL L C +++ L ++I + K G + +R+EW NR ISTV+AI +ALS+
Sbjct: 8 ILYQDLPCFLLFTSLHLFLPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSI 67
Query: 92 YYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHH 151
Y +++++ + + +S +S F YF+ D + + L ++HH
Sbjct: 68 YCLYYNEWIVNSLRS------TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHH 121
Query: 152 SLSGIAVAYSMFSGEGQLYTYMV--LISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIF 209
+++ ++++ G+G + ++ +E+TTP IN+R++L +K Y++NG++IF
Sbjct: 122 TIA--LLSFTFLGGKGLAHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIF 179
Query: 210 FAWLIARI 217
+++ R+
Sbjct: 180 VGFVLFRV 187
>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum
GN=tmem56a PE=3 SV=1
Length = 258
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 7/158 (4%)
Query: 50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
+ L+ T + L+ ++EW N+ ++T+ +I +LS Y ++ + + T
Sbjct: 28 IPSLLQTIFNNNEKQLSYSSKIEWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTS-- 85
Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIA--VAYSMFSGEG 167
+ LS+F L YFL D + Y L ++HH + GI V ++ +
Sbjct: 86 ---TCALSDFILKFISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSYVYIGLYYKKV 142
Query: 168 QLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNG 205
L L+ E+T P I+M+W+L ++ Y +NG
Sbjct: 143 HLTLLYFLLFEITNPFIHMKWFLKDLKLENHILYSING 180
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLAD 131
EWN R ++ H I I L+ Y F + T P T +++ L +S+GYFL D
Sbjct: 32 EWNCRLVTLFHGILIICLTAYIGF---IAGPWPFTHPGT-ENTYFQILTLVLSLGYFLFD 87
Query: 132 LGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEVTTPEINMRWYL 190
M + +Y G + HH++S + ++ GE + T VL SE+T P + RW+L
Sbjct: 88 --MAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARWFL 145
Query: 191 DTAG 194
G
Sbjct: 146 KRMG 149
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
++ L K + EWN R ++ H I LS Y F + P T L
Sbjct: 22 SFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTP----LQVHV 77
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEV 179
L +++GYF+ DLG +Y G + HH+LS + + ++ GE VL SE+
Sbjct: 78 LCLTLGYFIFDLGWC--IYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEI 135
Query: 180 TTPEINMRWYLDTAGMKRSTT 200
T P + +RW+L G S T
Sbjct: 136 TNPLLQIRWFLRETGHYHSFT 156
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 59 FKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSN 118
+ ++ L K + EW+ R ++ H + LS Y F + P T L
Sbjct: 20 YTSFCCLNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTP----LQV 75
Query: 119 FGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-S 177
L +++GYF+ DLG +Y G + HH+LS + + ++ GE VL S
Sbjct: 76 HVLCLTLGYFIFDLGWC--IYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNAVLFGS 133
Query: 178 EVTTPEINMRWYLDTAGMKRSTT 200
E+T P + MRW+L G S T
Sbjct: 134 EITNPLLQMRWFLRETGHYHSFT 156
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
++ L K + EW+ R ++ H + LS Y F + P T L
Sbjct: 22 SFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTP----LQVHV 77
Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEV 179
L +++GYF+ DLG +Y G + HH+LS + + ++ GE VL SE+
Sbjct: 78 LCLTLGYFIFDLGWC--VYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSEL 135
Query: 180 TTPEINMRWYLDTAGMKRSTT 200
T P + MRW+L G S T
Sbjct: 136 TNPLLQMRWFLRETGHYHSFT 156
>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56c PE=3 SV=1
Length = 272
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWS----DLFSDQQHTGPITFRSSW 115
KAY LT+ +++EW+ R +S +HA + + S D+F Q + +
Sbjct: 53 KAYTTLTEKKKLEWDQRVVSMIHAFLVLPFCIISAVESFKYGDIFYFQNDSLLMV----- 107
Query: 116 LSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSL---SGIAVAYSMFSGEGQLYTY 172
L +S GYF+ DL +I + P L G ++H + S I VA
Sbjct: 108 -----LSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSSNIYVALPHGRPCFVPIVA 161
Query: 173 MVLISEVTTPEINMRWYLDTAGMK 196
++LI+E++T +NM+ ++ K
Sbjct: 162 ILLITEISTIPLNMKGFIQVVNSK 185
>sp|O13752|YF22_SCHPO Uncharacterized TLC domain-containing protein C17A2.02c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.02c PE=4 SV=1
Length = 290
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
Query: 37 ILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFW 96
IL L +++ L+ +IS Y L+K R+ W+ +S+V +I + L +
Sbjct: 43 ILLSALFYQIINILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGYTCLKE 102
Query: 97 SDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGI 156
+ F D+ F S ++ ++ GYF+ DL I Y + G+ +V+H +
Sbjct: 103 VNAFPDK------LFGYSVVAGDIYALTAGYFVWDL-YITVRYVHITGIGFVIHAIAALF 155
Query: 157 AVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIAR 216
+ +S + Y L E++TP +N+ ++LD S ++NG I+ ++ R
Sbjct: 156 VITFS-YRPYLMYYGPTYLSWELSTPFLNIHYFLDKTNRTGSKFQMINGFILIVTFICVR 214
Query: 217 I 217
I
Sbjct: 215 I 215
>sp|Q71RH2|FA57B_HUMAN Protein FAM57B OS=Homo sapiens GN=FAM57B PE=2 SV=1
Length = 274
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 164 SGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYM 223
G+G + +L++EV+TP + + L + + + VNG ++ ++L R+LLF Y+
Sbjct: 152 QGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVNGALMLLSFLCCRVLLFPYL 211
Query: 224 FY 225
++
Sbjct: 212 YW 213
>sp|Q7TNV1|FA57B_MOUSE Protein FAM57B OS=Mus musculus GN=Fam57b PE=2 SV=2
Length = 275
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 164 SGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYM 223
G+G + +L++EV+TP + + L + + + VNG ++ ++L R+LLF Y+
Sbjct: 152 QGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVNGALMLLSFLCCRVLLFPYL 211
Query: 224 FY 225
++
Sbjct: 212 YW 213
>sp|Q8TBR7|FA57A_HUMAN Protein FAM57A OS=Homo sapiens GN=FAM57A PE=1 SV=2
Length = 257
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 148 VVHHSL---SGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVN 204
+ HH++ + VA + G + + +E++TP +++ L + + Y VN
Sbjct: 121 ITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVN 180
Query: 205 GVIIFFAWLIARILLFVYMFY 225
G++ +L RILLF +M++
Sbjct: 181 GILTLATFLSCRILLFPFMYW 201
>sp|Q5ND56|FA57A_MOUSE Protein FAM57A OS=Mus musculus GN=Fam57a PE=2 SV=1
Length = 257
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 148 VVHHS---LSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVN 204
V HH+ L + ++ + G + + +E++TP +++ + + + Y VN
Sbjct: 121 VTHHTVILLFLVPISQKLRGDLGDFFVGCIFTAELSTPFVSLARIMIQLKQQHTLLYKVN 180
Query: 205 GVIIFFAWLIARILLFVYMFY 225
G++ +L RILLF +M++
Sbjct: 181 GILTVTTFLFCRILLFPFMYW 201
>sp|P47153|TDA4_YEAST Topoisomerase I damage affected protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TDA4 PE=1
SV=1
Length = 279
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 126 GYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEIN 185
GYF+ DL M Y L G+E+ H++ + V Q + LI E +TP +N
Sbjct: 121 GYFIWDLTMCV-RYFKLYGLEFT-GHAIGSVYVMLLSLRPFCQPWIGRFLIYEASTPFVN 178
Query: 186 MRWYLDTAGMKRSTTY-----LVNGVIIFFAWLIARI 217
+ W++ K + +VNG+++ + + RI
Sbjct: 179 INWFIMQCNAKSKNSIPLWFNVVNGLLLMTVFFVVRI 215
>sp|Q3U4B4|LIPN_MOUSE Lipase member N OS=Mus musculus GN=Lipn PE=2 SV=1
Length = 400
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 115 WLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFS 164
WL NF G S+G+ LAD G W+ S G H +LS + FS
Sbjct: 96 WLENFANG-SLGFILADAGYDVWMGNSRGNTWSRRHKTLSANEEKFWAFS 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,671,023
Number of Sequences: 539616
Number of extensions: 3356330
Number of successful extensions: 9200
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 9165
Number of HSP's gapped (non-prelim): 37
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)