Query 026443
Match_columns 238
No_of_seqs 156 out of 635
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4561 Uncharacterized conser 100.0 2.6E-38 5.7E-43 274.2 -1.8 223 7-235 2-231 (281)
2 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 5.9E-29 1.3E-33 206.4 15.5 161 72-233 1-164 (198)
3 smart00724 TLC TRAM, LAG1 and 100.0 3.1E-28 6.8E-33 204.6 15.0 162 68-233 1-164 (205)
4 KOG4474 Uncharacterized conser 99.9 1.3E-26 2.8E-31 197.4 9.2 167 64-235 37-204 (253)
5 COG5058 LAG1 Protein transport 96.8 0.003 6.6E-08 56.4 6.1 150 65-218 149-304 (395)
6 KOG1607 Protein transporter of 95.8 0.36 7.8E-06 43.5 13.8 162 61-225 77-241 (318)
7 PF02674 Colicin_V: Colicin V 55.0 85 0.0018 24.1 7.7 81 7-94 35-116 (146)
8 PF06716 DUF1201: Protein of u 27.3 1.8E+02 0.0038 18.7 5.3 34 199-232 6-39 (54)
9 PF06423 GWT1: GWT1; InterPro 26.7 1.7E+02 0.0036 22.9 5.1 44 38-81 6-49 (136)
10 PHA02690 hypothetical protein; 24.9 1.9E+02 0.0042 20.7 4.5 36 176-220 30-65 (90)
11 COG3311 AlpA Predicted transcr 24.5 50 0.0011 23.1 1.5 29 176-204 6-34 (70)
12 PF12650 DUF3784: Domain of un 24.4 1.2E+02 0.0027 21.9 3.8 36 59-94 23-58 (97)
13 KOG1608 Protein transporter of 22.0 6E+02 0.013 23.1 13.6 151 64-226 110-271 (374)
No 1
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.6e-38 Score=274.23 Aligned_cols=223 Identities=35% Similarity=0.569 Sum_probs=187.3
Q ss_pred hHHHHhhcHHHHHHHhhhhccCCCcccHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhcCCCcchhccee-ehhhHHHH
Q 026443 7 TVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLT---QLISTFYFKAYNGLTKIQRMEWN-NRGISTVH 82 (238)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~i~~ls---~~ls~~~~k~y~~l~~~~k~~w~-~r~vS~vH 82 (238)
++.+.+++..+.+.++.+...++++..+.....++++|+..|++. +..++...++|.++++++|+||| +|+||++|
T Consensus 2 ~i~~~~~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~h 81 (281)
T KOG4561|consen 2 VIPMLPARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVH 81 (281)
T ss_pred CCCCCCCcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeeh
Confidence 456678889999999999999999999999999999999999988 77777777999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhccCCCC-CCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHhHHH
Q 026443 83 AIFITALSLYYVFWSDLFS-DQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYS 161 (238)
Q Consensus 83 Aiv~~~~~~~~l~~~~~~~-~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~~~~llHH~~~l~~~~~~ 161 (238)
+++++ ++|+++.++.+. |....+...+..+...... .|||++|+..+.++++..+|.+|++||++++......
T Consensus 82 slv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~ 155 (281)
T KOG4561|consen 82 SLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCL 155 (281)
T ss_pred Hhhhc--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheee
Confidence 99998 889888776554 4443333334433333222 5699999986667788899999999999994444444
Q ss_pred hccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--Hhccccc
Q 026443 162 MFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVY--LHYDQVI 235 (238)
Q Consensus 162 l~~~~~~~~~~~~Ll~ElSTPFlnlRw~L~~~g~~~s~~y~~n~~l~~~tFf~~Ri~~~~y~~~~~~--~~~~~v~ 235 (238)
...|.+++++..+|++|+||||+|+||+++++|+|+|++|++||++++++|+++||+..||++++++ .+..+++
T Consensus 156 ~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~ 231 (281)
T KOG4561|consen 156 LRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLN 231 (281)
T ss_pred EecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5678899999999999999999999999999999999999999999999999999998889988888 4444443
No 2
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.96 E-value=5.9e-29 Score=206.44 Aligned_cols=161 Identities=34% Similarity=0.599 Sum_probs=136.5
Q ss_pred ceeehhhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCCC-hhhHHH
Q 026443 72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGG-MEYVVH 150 (238)
Q Consensus 72 ~w~~r~vS~vHAiv~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~-~~~llH 150 (238)
||++|++|++||++++.+|++++..++...++.. |....++++..+...++++|||++|++++..+.+..+| .++++|
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H 79 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWP-DDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH 79 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcc-cCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 6999999999999999999999987642111122 33323446677789999999999999999986654443 899999
Q ss_pred HHHHHHHhHHHhccCCchhHHHHHHHHhhcchhhhHHHHHHHc-CC-CCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026443 151 HSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTA-GM-KRSTTYLVNGVIIFFAWLIARILLFVYMFYHVY 228 (238)
Q Consensus 151 H~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRw~L~~~-g~-~~s~~y~~n~~l~~~tFf~~Ri~~~~y~~~~~~ 228 (238)
|++++.++..+...+.+.+++..+++.|+||||+|+||++++. |. +++..+.+|+++++++|+++|++.+|+..++.+
T Consensus 80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~ 159 (198)
T PF03798_consen 80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY 159 (198)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887888999999999999999999999999999 77 688999999999999999999999999988888
Q ss_pred Hhccc
Q 026443 229 LHYDQ 233 (238)
Q Consensus 229 ~~~~~ 233 (238)
.+..+
T Consensus 160 ~~~~~ 164 (198)
T PF03798_consen 160 WDVWP 164 (198)
T ss_pred HHhcc
Confidence 76544
No 3
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.96 E-value=3.1e-28 Score=204.58 Aligned_cols=162 Identities=29% Similarity=0.407 Sum_probs=141.1
Q ss_pred chhcceeehhhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCC--Ch
Q 026443 68 IQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG--GM 145 (238)
Q Consensus 68 ~~k~~w~~r~vS~vHAiv~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~--~~ 145 (238)
+|+.||++|++|.+||++++..+++.... +.|+..+++. .+.++..+...++++|||++|+.++..+.+... ++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~ 76 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK 76 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 47889999999999999999999887653 1122223554 677999999999999999999999986554433 79
Q ss_pred hhHHHHHHHHHHhHHHhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026443 146 EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFY 225 (238)
Q Consensus 146 ~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRw~L~~~g~~~s~~y~~n~~l~~~tFf~~Ri~~~~y~~~ 225 (238)
++++||++++.++..+...+....++...++.|+||||+|+||+++++|.|+++++..|+.+++++|+++|++++|+..+
T Consensus 77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~ 156 (205)
T smart00724 77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL 156 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888788888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 026443 226 HVYLHYDQ 233 (238)
Q Consensus 226 ~~~~~~~~ 233 (238)
..+.+.++
T Consensus 157 ~~~~~~~~ 164 (205)
T smart00724 157 TVTVHYAQ 164 (205)
T ss_pred HHHhhhhh
Confidence 98887665
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.3e-26 Score=197.43 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=145.4
Q ss_pred CCCcchhcceeehhhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 026443 64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG 143 (238)
Q Consensus 64 ~l~~~~k~~w~~r~vS~vHAiv~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~ 143 (238)
.++..+|.+|.|+.||++||++++.++.+++..++ +...|++ ...+..+..+.++|+|||++|+++|..+.....
T Consensus 37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~----~~~~~~~-~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~ 111 (253)
T KOG4474|consen 37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDP----EMVDDPI-TYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL 111 (253)
T ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCc----ccccCHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 46677799999999999999999999999988642 3445666 455788899999999999999999998654456
Q ss_pred ChhhHHHHHHHHHHhHHHhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCC-ChHHHHHHHHHHHHHHHHHHhHHHH
Q 026443 144 GMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKR-STTYLVNGVIIFFAWLIARILLFVY 222 (238)
Q Consensus 144 ~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRw~L~~~g~~~-s~~y~~n~~l~~~tFf~~Ri~~~~y 222 (238)
.+++++||++++.++..+++++++..++.+.+++|+|+||+|+|.+++.+|.++ ++.++++..++.++||++|++...|
T Consensus 112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~ 191 (253)
T KOG4474|consen 112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY 191 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence 789999999999999999999998889999999999999999999999999865 4479999999999999999999999
Q ss_pred HHHHHHHhccccc
Q 026443 223 MFYHVYLHYDQVI 235 (238)
Q Consensus 223 ~~~~~~~~~~~v~ 235 (238)
+.++.+.+.+.++
T Consensus 192 l~~~~i~~~~~~~ 204 (253)
T KOG4474|consen 192 LTYFLIANAPFLH 204 (253)
T ss_pred EEEEEeeeCCCcc
Confidence 8887777665444
No 5
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.003 Score=56.39 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=96.8
Q ss_pred CCcchhcceeehhhHHHHHHHHHHHHHHHHhccCCCCC---CCCCC-CccccCChhhHHHHHHHHHHHHHHHHHHHHh--
Q 026443 65 LTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSD---QQHTG-PITFRSSWLSNFGLGVSVGYFLADLGMIFWL-- 138 (238)
Q Consensus 65 l~~~~k~~w~~r~vS~vHAiv~~~~~~~~l~~~~~~~~---~~~~d-~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~-- 138 (238)
-++++..+++...-+.+--.+++..|+|+...++.|.- +..++ |. +...+.-...-.+-.||-+....+.+++
T Consensus 149 ~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqaafw~qQa~ilvLqlE 227 (395)
T COG5058 149 RSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQAAFWAQQACILVLQLE 227 (395)
T ss_pred CCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHHHHHHHHHhhheeeec
Confidence 34555578899888999899999999999887766531 11111 23 4445555555667778888885555442
Q ss_pred cccCCChhhHHHHHHHHHHhHHHhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHh
Q 026443 139 YPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARIL 218 (238)
Q Consensus 139 ~~~~~~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRw~L~~~g~~~s~~y~~n~~l~~~tFf~~Ri~ 218 (238)
.|+..-++++.||++.++-...+......-.-.+....+.+|-|||.+...+.-.|- ..++.+- .+|+..|+-.|-.
T Consensus 228 kprkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~--~l~~~iF-~iFv~~wIysRHy 304 (395)
T COG5058 228 KPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS--VLATFIF-GIFVFIWIYSRHY 304 (395)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc--hhHHHHH-HHHHHHHHHHHHH
Confidence 344456789999999877654443222221122234588999999999888766654 3334333 4577888888833
No 6
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.36 Score=43.49 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=100.5
Q ss_pred hhcCCCcchhcceeehhhHHHHHHHHHHHHHHHHhccCCCCCCC---CCCCccccCChhhHHHHHHHHHHHHHHHHHHHH
Q 026443 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ---HTGPITFRSSWLSNFGLGVSVGYFLADLGMIFW 137 (238)
Q Consensus 61 ~y~~l~~~~k~~w~~r~vS~vHAiv~~~~~~~~l~~~~~~~~~~---~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~ 137 (238)
.++.-+++++.+.....=.++--.++.+.|+++...++-+.+.. .+-|. ....+.-...-.+-+|+-..-+..+..
T Consensus 77 ~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~~ 155 (318)
T KOG1607|consen 77 RLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALFL 155 (318)
T ss_pred hcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44444455556777777777888888888999887632222210 11111 222344455567778887777777765
Q ss_pred hcccCCChhhHHHHHHHHHHhHHHhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHH
Q 026443 138 LYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARI 217 (238)
Q Consensus 138 ~~~~~~~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFlnlRw~L~~~g~~~s~~y~~n~~l~~~tFf~~Ri 217 (238)
...+..-.++++||+++++-...+...+..-.-.....+...|-++|-+..+++-.+.+ .+-...-+++...|+..|+
T Consensus 156 d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL 233 (318)
T KOG1607|consen 156 DEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRL 233 (318)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHH
Confidence 44443446799999998766555443332222233445788899999987766554443 4444445678889999998
Q ss_pred hHHHHHHH
Q 026443 218 LLFVYMFY 225 (238)
Q Consensus 218 ~~~~y~~~ 225 (238)
...|....
T Consensus 234 ~~~p~wil 241 (318)
T KOG1607|consen 234 IYYPFWIL 241 (318)
T ss_pred HHHHHHHH
Confidence 77765543
No 7
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=54.97 E-value=85 Score=24.14 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=41.2
Q ss_pred hHHHHhhcHHHHHHHhhhh-ccCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcchhcceeehhhHHHHHHH
Q 026443 7 TVTAIKSYQNQAQVLVKNY-IIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIF 85 (238)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~s~~~~~~i~~ls~~ls~~~~k~y~~l~~~~k~~w~~r~vS~vHAiv 85 (238)
-+.|.+-|++..+...+.. ..+++. ...+.+.+++.+...+.+.+.+.-++..++++..+-||....+=+.+
T Consensus 35 ~~~a~~~~~~~~~~l~~~~~~~~~~~-------~~~iaf~~~f~~~~~i~~~i~~~l~~~~~~~~~~~~dr~lG~~~G~~ 107 (146)
T PF02674_consen 35 LFVAFLFYPPLAPFLSNYFSSLSPPF-------ANIIAFIILFVLVYIIVRIIGKLLRRIVKKPFLGWLDRLLGALLGLA 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3456666666666666643 222222 22222223333333333322223333335567778888888877777
Q ss_pred HHHHHHHHH
Q 026443 86 ITALSLYYV 94 (238)
Q Consensus 86 ~~~~~~~~l 94 (238)
.+..-.+.+
T Consensus 108 ~~~li~~~~ 116 (146)
T PF02674_consen 108 KGLLILSLL 116 (146)
T ss_pred HHHHHHHHH
Confidence 776665544
No 8
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=27.34 E-value=1.8e+02 Score=18.74 Aligned_cols=34 Identities=15% Similarity=0.441 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc
Q 026443 199 TTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYD 232 (238)
Q Consensus 199 ~~y~~n~~l~~~tFf~~Ri~~~~y~~~~~~~~~~ 232 (238)
+.|..-+..+++.||++=.+...+..|+-...+.
T Consensus 6 Rs~L~~~F~~lIC~Fl~~~~~F~~F~~Kqilfr~ 39 (54)
T PF06716_consen 6 RSYLLLAFGFLICLFLFCLVVFIWFVYKQILFRN 39 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3577788889999998888888888876655443
No 9
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=26.71 E-value=1.7e+02 Score=22.90 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcCCCcchhcceeehhhHHH
Q 026443 38 LAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTV 81 (238)
Q Consensus 38 ~~s~~~~~~i~~ls~~ls~~~~k~y~~l~~~~k~~w~~r~vS~v 81 (238)
+.|+..|..+|.++..+-+.+++.-+....+++.+|-.......
T Consensus 6 i~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~ 49 (136)
T PF06423_consen 6 IFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLL 49 (136)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHH
Confidence 57889999999988888776664444332344445555544443
No 10
>PHA02690 hypothetical protein; Provisional
Probab=24.87 E-value=1.9e+02 Score=20.74 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=26.5
Q ss_pred HHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHhHH
Q 026443 176 ISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLF 220 (238)
Q Consensus 176 l~ElSTPFlnlRw~L~~~g~~~s~~y~~n~~l~~~tFf~~Ri~~~ 220 (238)
=.|=|||.+..-|-+ +|...--.+++.++++|+++-
T Consensus 30 hlEgs~plLR~~~Rl---------LfDL~lTvfV~myiv~Rl~~R 65 (90)
T PHA02690 30 HLEGSTPLLRQMWRL---------LFDLLLTVFVVMYIVFRLIWR 65 (90)
T ss_pred HHhcCCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHc
Confidence 458888888765533 566677788889999998864
No 11
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=24.52 E-value=50 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHhhcchhhhHHHHHHHcCCCCChHHHHH
Q 026443 176 ISEVTTPEINMRWYLDTAGMKRSTTYLVN 204 (238)
Q Consensus 176 l~ElSTPFlnlRw~L~~~g~~~s~~y~~n 204 (238)
.++.+++++.++-.+.++|++.+.+|...
T Consensus 6 ~~~~~~r~lrl~ev~~~~GlSrstiYr~i 34 (70)
T COG3311 6 EMRHTDRLLRLPEVAQLTGLSRSTIYRLI 34 (70)
T ss_pred cccccchhhhHHHHHHHHCccHHHHHHHH
Confidence 35678999999999999999988888753
No 12
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=24.43 E-value=1.2e+02 Score=21.89 Aligned_cols=36 Identities=11% Similarity=0.400 Sum_probs=27.4
Q ss_pred hhhhcCCCcchhcceeehhhHHHHHHHHHHHHHHHH
Q 026443 59 FKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYV 94 (238)
Q Consensus 59 ~k~y~~l~~~~k~~w~~r~vS~vHAiv~~~~~~~~l 94 (238)
-.+|+.+|++||.+.|.+-.+-.-+......|+..+
T Consensus 23 IaGyntms~eEk~~~D~~~l~r~~g~~~~~~~i~~l 58 (97)
T PF12650_consen 23 IAGYNTMSKEEKEKYDKKKLCRFMGKFMLIIGIILL 58 (97)
T ss_pred hhhcccCCHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999987777666666666665444
No 13
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=6e+02 Score=23.08 Aligned_cols=151 Identities=11% Similarity=0.180 Sum_probs=66.4
Q ss_pred CCCcchhcceeehhhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcc--ccCCh---hhHHHHHHHHHHHHHHHHHHHHh
Q 026443 64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPIT--FRSSW---LSNFGLGVSVGYFLADLGMIFWL 138 (238)
Q Consensus 64 ~l~~~~k~~w~~r~vS~vHAiv~~~~~~~~l~~~~~~~~~~~~d~i~--~~~s~---~~~~~~~~s~GYFl~Dl~~~~~~ 138 (238)
++|+-+.-+++.-.-=.+--+.+.++|.+++...+-.+++. .+. ++... ..++....-++|-+.-+=.....
T Consensus 110 hlSK~k~~kFnESgql~~Fy~~S~vwg~~ili~E~yl~~p~---~lW~~yPh~~msfq~Kffyi~QlaYwlHafPElYfQ 186 (374)
T KOG1608|consen 110 HLSKVKHSKFNESGQLVAFYLFSCVWGFYILISEGYLSDPT---SLWEGYPHRVMSFQMKFFYISQLAYWLHAFPELYFQ 186 (374)
T ss_pred hhhHhhhhhhccCCeeeehhhHHhhhhheeeeecccccChH---HHHhcCCCchhhHHHHHHHHHHHHHHHHHChHHHHH
Confidence 45555555566543333445667777788776532111111 110 22221 12333344455555444333321
Q ss_pred cccCC----ChhhHHHHHHHHHH-hHHHhccCCchhHHHHHHHHhhcchhh-hHHHHHHHcCCCCChHHHHHHHHHHHHH
Q 026443 139 YPSLG----GMEYVVHHSLSGIA-VAYSMFSGEGQLYTYMVLISEVTTPEI-NMRWYLDTAGMKRSTTYLVNGVIIFFAW 212 (238)
Q Consensus 139 ~~~~~----~~~~llHH~~~l~~-~~~~l~~~~~~~~~~~~Ll~ElSTPFl-nlRw~L~~~g~~~s~~y~~n~~l~~~tF 212 (238)
-.+.. ...+.+=|+.-+.+ +.. ...-.+...|..|-.|-++ |+-.+.--.+.|..+++.++. ..|
T Consensus 187 K~Kkeeiprqlvyi~l~l~hI~gAYll-----nl~rlgLvLl~LhYftellfHi~rlfyf~dek~~k~fslwa----~vF 257 (374)
T KOG1608|consen 187 KTKKEEIPRQLVYIILHLFHIAGAYLL-----NLNRLGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSLWA----AVF 257 (374)
T ss_pred HHhhhhccHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHheecccchhHHHHHHH----HHH
Confidence 11111 22333333333332 221 1223444445555544444 443344445666667776554 456
Q ss_pred HHHHHhHHHHHHHH
Q 026443 213 LIARILLFVYMFYH 226 (238)
Q Consensus 213 f~~Ri~~~~y~~~~ 226 (238)
++.|+.........
T Consensus 258 ~l~Rl~tliiaVlt 271 (374)
T KOG1608|consen 258 VLGRLGTLIIAVLT 271 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 67776655444333
Done!