Query 026443
Match_columns 238
No_of_seqs 156 out of 635
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9p_A Pheromone alpha factor 19.3 78 0.0027 21.7 2.7 28 188-219 40-67 (80)
2 1td6_A F10_ORF294, hypothetica 5.9 9.9E+02 0.034 19.9 5.5 49 17-69 74-122 (306)
3 2ls4_A High affinity copper up 7.8 1.3E+02 0.0044 16.0 0.0 12 120-131 10-21 (26)
4 1hry_A Human SRY; DNA, DNA-bin 4.5 2.1E+02 0.0072 18.3 0.5 22 54-75 35-56 (76)
5 1i11_A Transcription factor SO 4.5 2.9E+02 0.0098 17.9 1.2 21 54-74 35-55 (81)
6 1ckt_A High mobility group 1 p 4.3 2.5E+02 0.0087 17.6 0.7 22 53-74 33-54 (71)
7 2lx0_A Membrane fusion protein 4.2 5.7E+02 0.02 13.7 4.5 24 196-219 2-25 (32)
8 3fgh_A Transcription factor A, 4.0 2.5E+02 0.0084 17.5 0.5 21 54-74 29-49 (67)
9 3vgx_C Envelope glycoprotein G 4.0 3.4E+02 0.012 15.7 1.0 12 5-16 26-37 (40)
10 4a3n_A Transcription factor SO 3.6 2.1E+02 0.0071 17.9 -0.2 21 54-74 33-53 (71)
No 1
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=19.33 E-value=78 Score=21.66 Aligned_cols=28 Identities=21% Similarity=0.576 Sum_probs=20.7
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHhH
Q 026443 188 WYLDTAGMKRSTTYLVNGVIIFFAWLIARILL 219 (238)
Q Consensus 188 w~L~~~g~~~s~~y~~n~~l~~~tFf~~Ri~~ 219 (238)
|++-| .|+|+++.+|+..+++. +.|.+.
T Consensus 40 ~lltk--krrspiF~lN~~~L~l~--iirs~l 67 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFLI--ILHSAL 67 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHHH--HHHHHH
Confidence 55544 67899999999998877 456544
No 2
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=5.94 E-value=9.9e+02 Score=19.88 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=28.2
Q ss_pred HHHHHhhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcch
Q 026443 17 QAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQ 69 (238)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~i~~ls~~ls~~~~k~y~~l~~~~ 69 (238)
.+++..++ .++.|++|.+.+- + |-++.+.+++-+--.=+..+.+|++++
T Consensus 74 ~Ale~~eE-ELdtpYlp~~lv~--~-Fqsl~~~v~~~Lyene~~~lesL~~ee 122 (306)
T 1td6_A 74 TAQSRCEE-ELAAPYLPKPLVS--F-FQSLLQLVNHDLLEQQNAALASLPAAK 122 (306)
T ss_dssp HHHHHHHH-HTTCTTSCHHHHH--H-HHHHHHHHHHHHHHHHCGGGGGCCHHH
T ss_pred HHHHHHHH-HhcCCcccHHHHH--H-HHHHHHHhhHHHHHhhHHHHhcCCHHH
Confidence 34555555 6889999986443 2 223456667666332235666666554
No 3
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.81 E-value=1.3e+02 Score=16.03 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHH
Q 026443 120 GLGVSVGYFLAD 131 (238)
Q Consensus 120 ~~~~s~GYFl~D 131 (238)
++.-.+|||+++
T Consensus 10 vlGa~~Gyf~F~ 21 (26)
T 2ls4_A 10 AAGAGTGYFLFS 21 (26)
Confidence 445677888764
No 4
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=4.50 E-value=2.1e+02 Score=18.29 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=15.3
Q ss_pred HHhhhhhhhcCCCcchhcceee
Q 026443 54 ISTFYFKAYNGLTKIQRMEWNN 75 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~~ 75 (238)
+|+.+.+.|++|++++|..|..
T Consensus 35 isk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 35 ISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhHHHhCCHHHHHHHHH
Confidence 4555667888999887766543
No 5
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=4.50 E-value=2.9e+02 Score=17.91 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=15.3
Q ss_pred HHhhhhhhhcCCCcchhccee
Q 026443 54 ISTFYFKAYNGLTKIQRMEWN 74 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~ 74 (238)
+|+.+.+.|++|++.+|..|.
T Consensus 35 isk~lg~~Wk~ls~eeK~~y~ 55 (81)
T 1i11_A 35 ISKILGSRWKAMTNLEKQPYY 55 (81)
T ss_dssp HHHHHHHHHTTSCSGGGHHHH
T ss_pred HHHHHHhhhhhCCHHHHHHHH
Confidence 455666789999988776654
No 6
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=4.26 E-value=2.5e+02 Score=17.55 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=15.3
Q ss_pred HHHhhhhhhhcCCCcchhccee
Q 026443 53 LISTFYFKAYNGLTKIQRMEWN 74 (238)
Q Consensus 53 ~ls~~~~k~y~~l~~~~k~~w~ 74 (238)
-+++.+.+.|++|++.+|..|.
T Consensus 33 eisk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 33 EFSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHH
Confidence 3555666788999987776553
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=4.24 E-value=5.7e+02 Score=13.70 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhH
Q 026443 196 KRSTTYLVNGVIIFFAWLIARILL 219 (238)
Q Consensus 196 ~~s~~y~~n~~l~~~tFf~~Ri~~ 219 (238)
|++..-.+.|+.-.++|+.+-.-.
T Consensus 2 khtiweviaglvalltflafgfwl 25 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888877654433
No 8
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=3.99 E-value=2.5e+02 Score=17.50 Aligned_cols=21 Identities=5% Similarity=0.012 Sum_probs=15.4
Q ss_pred HHhhhhhhhcCCCcchhccee
Q 026443 54 ISTFYFKAYNGLTKIQRMEWN 74 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~ 74 (238)
+++.+.+.|++|++.+|-.|.
T Consensus 29 i~k~lg~~Wk~ls~~eK~~y~ 49 (67)
T 3fgh_A 29 KLKTVKENWKNLSDSEKELYI 49 (67)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHH
Confidence 556667789999988776554
No 9
>3vgx_C Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1} PDB: 3vu5_A 3vu6_A
Probab=3.98 E-value=3.4e+02 Score=15.74 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=7.0
Q ss_pred hhhHHHHhhcHH
Q 026443 5 EQTVTAIKSYQN 16 (238)
Q Consensus 5 ~~~~~~~~~~~~ 16 (238)
.+++-|++.|++
T Consensus 26 qarvla~e~ylk 37 (40)
T 3vgx_C 26 QARILAVERYLK 37 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccccccccCCc
Confidence 345666666654
No 10
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=3.62 E-value=2.1e+02 Score=17.91 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=14.6
Q ss_pred HHhhhhhhhcCCCcchhccee
Q 026443 54 ISTFYFKAYNGLTKIQRMEWN 74 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~ 74 (238)
+|+.+.+.|++|++.+|..|.
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 33 LSKMLGKSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 455556788888887776554
Done!