Query 026445
Match_columns 238
No_of_seqs 70 out of 72
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 13:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jsl_A DNA ligase; NAD+-depend 92.1 0.13 4.3E-06 46.9 4.3 26 150-175 19-45 (318)
2 3uq8_A DNA ligase; adenylated 92.0 0.14 4.9E-06 46.6 4.5 27 149-175 16-43 (322)
3 1ta8_A DNA ligase, NAD-depende 91.3 0.14 4.9E-06 46.8 3.9 26 150-175 26-52 (332)
4 4glw_A DNA ligase; inhibitor, 90.4 0.052 1.8E-06 48.7 -0.0 25 150-174 16-41 (305)
5 4glw_A DNA ligase; inhibitor, 90.3 0.046 1.6E-06 49.0 -0.4 35 96-130 6-40 (305)
6 3uq8_A DNA ligase; adenylated 89.9 0.27 9.2E-06 44.8 4.3 36 95-130 6-41 (322)
7 1zau_A DNA ligase; AMP; HET: D 89.7 0.17 5.8E-06 46.1 2.8 26 150-175 28-54 (328)
8 1b04_A Protein (DNA ligase); D 89.5 0.17 5.7E-06 46.0 2.6 25 150-174 21-46 (318)
9 4glx_A DNA ligase; inhibitor, 89.5 0.2 7E-06 48.8 3.4 25 150-174 19-44 (586)
10 3jsl_A DNA ligase; NAD+-depend 89.3 0.32 1.1E-05 44.3 4.4 37 94-130 7-43 (318)
11 1zau_A DNA ligase; AMP; HET: D 89.2 0.34 1.2E-05 44.1 4.4 38 93-130 15-52 (328)
12 1b04_A Protein (DNA ligase); D 89.1 0.37 1.2E-05 43.8 4.5 37 94-130 9-45 (318)
13 1ta8_A DNA ligase, NAD-depende 88.9 0.41 1.4E-05 43.7 4.7 37 94-130 14-50 (332)
14 4glx_A DNA ligase; inhibitor, 88.5 0.31 1.1E-05 47.5 3.9 37 94-130 7-43 (586)
15 2owo_A DNA ligase; protein-DNA 83.6 0.9 3.1E-05 45.0 4.4 37 94-130 7-43 (671)
16 1dgs_A DNA ligase; AMP complex 82.5 0.49 1.7E-05 46.8 2.0 27 150-176 21-48 (667)
17 2owo_A DNA ligase; protein-DNA 82.1 0.6 2.1E-05 46.2 2.4 26 150-175 19-45 (671)
18 1dgs_A DNA ligase; AMP complex 80.7 0.96 3.3E-05 44.8 3.3 36 95-130 10-45 (667)
19 3sgi_A DNA ligase; HET: DNA AM 75.8 0.35 1.2E-05 47.6 -1.4 26 150-175 28-54 (615)
20 3sgi_A DNA ligase; HET: DNA AM 72.9 0.79 2.7E-05 45.1 0.3 39 94-132 16-55 (615)
21 3vc8_A RNA-directed RNA polyme 57.9 31 0.0011 27.0 6.5 67 112-190 12-90 (94)
22 3gzf_A Replicase polyprotein 1 57.3 31 0.0011 27.0 6.5 67 112-190 17-94 (96)
23 3c1l_A Putative antioxidant de 41.3 36 0.0012 26.7 4.8 76 91-171 63-148 (188)
24 3rmt_A 3-phosphoshikimate 1-ca 40.2 22 0.00075 33.1 3.8 50 142-191 318-376 (455)
25 2pfx_A Uncharacterized peroxid 36.1 40 0.0014 26.6 4.2 51 116-171 101-151 (191)
26 3g5o_A Uncharacterized protein 31.8 45 0.0015 25.2 3.7 48 116-172 46-93 (108)
27 2prr_A Alkylhydroperoxidase AH 30.6 44 0.0015 26.5 3.7 75 91-170 67-151 (197)
28 2oyo_A Uncharacterized peroxid 29.9 57 0.0019 25.9 4.2 76 91-171 71-156 (196)
29 1tx2_A DHPS, dihydropteroate s 29.7 68 0.0023 28.5 5.1 104 119-230 97-211 (297)
30 1q7z_A 5-methyltetrahydrofolat 28.6 1.5E+02 0.0052 28.3 7.6 105 119-230 369-483 (566)
31 1ub0_A THID, phosphomethylpyri 27.9 1.8E+02 0.0061 23.2 6.9 53 123-183 121-174 (258)
32 3m1m_A ORF904; primase, polyme 27.9 22 0.00075 33.1 1.6 67 107-203 209-276 (335)
33 2imp_A Lactaldehyde dehydrogen 24.9 2.1E+02 0.0073 26.1 7.6 68 117-184 261-356 (479)
34 3lns_A Benzaldehyde dehydrogen 24.3 1.1E+02 0.0037 27.9 5.5 68 116-183 245-331 (457)
35 2pn0_A Prokaryotic transcripti 23.6 1E+02 0.0035 24.1 4.6 65 155-235 6-79 (141)
36 1a4s_A ALDH, betaine aldehyde 23.5 2.4E+02 0.0083 26.0 7.8 68 117-184 273-367 (503)
37 1wnd_A Putative betaine aldehy 23.2 2.3E+02 0.0078 26.2 7.5 68 117-184 277-372 (495)
38 3ros_A NAD-dependent aldehyde 22.0 2.8E+02 0.0097 25.5 7.9 69 116-184 240-335 (484)
39 3b4w_A Aldehyde dehydrogenase; 21.1 1.7E+02 0.0058 27.1 6.2 68 117-184 264-358 (495)
40 1jxh_A Phosphomethylpyrimidine 20.5 3.5E+02 0.012 22.2 7.5 53 123-183 145-199 (288)
41 1rf6_A 5-enolpyruvylshikimate- 20.2 46 0.0016 30.0 2.1 49 142-190 312-369 (427)
42 1bxs_A Aldehyde dehydrogenase; 20.1 2.4E+02 0.0082 26.1 7.0 68 117-184 279-373 (501)
43 3sza_A Aldehyde dehydrogenase, 20.0 2.2E+02 0.0075 26.1 6.7 66 116-184 235-324 (469)
No 1
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=92.11 E-value=0.13 Score=46.94 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=21.6
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHhc
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~~ 175 (238)
-.+|| .|+|+|||+|||+|..+|+..
T Consensus 19 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 45 (318)
T 3jsl_A 19 SYEYYVEDNPSVPDSEYDKLLHELIKI 45 (318)
T ss_dssp HHHHHTSCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 44666 599999999999999998754
No 2
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=91.96 E-value=0.14 Score=46.58 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.4
Q ss_pred HHHhhhc-CCCCCChHHHHHHHHHHHhc
Q 026445 149 ASMAYVA-GKPIMSDEEYDKLKQKLKME 175 (238)
Q Consensus 149 A~~AY~s-GkPimsDeeFD~LK~eLk~~ 175 (238)
+-.+||. |+|+|||+|||+|..+|+..
T Consensus 16 ~~~~YY~~d~p~IsD~eYD~L~~eL~~l 43 (322)
T 3uq8_A 16 YEYEYHVLDNPSVPDSEYDRLFHQLKAL 43 (322)
T ss_dssp HHHHHHTSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 3456775 99999999999999998764
No 3
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=91.34 E-value=0.14 Score=46.76 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.1
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHhc
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~~ 175 (238)
-.+|| .|+|+|+|+|||+|..+|+..
T Consensus 26 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 52 (332)
T 1ta8_A 26 SHEYYVKDQPSVEDYVYDRLYKELVDI 52 (332)
T ss_dssp HHHHHTSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44665 799999999999999999864
No 4
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=90.36 E-value=0.052 Score=48.69 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=3.9
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHh
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~ 174 (238)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 16 ~~~YY~~~~p~IsD~eYD~L~~eL~~ 41 (305)
T 4glw_A 16 ATEYYTSDNPSVSDSEYDRLYRELVE 41 (305)
T ss_dssp ---------------------CHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44676 69999999999999998875
No 5
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=90.27 E-value=0.046 Score=49.03 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=3.8
Q ss_pred hHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 96 GELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 96 ge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
.++..+--.+-.+||..|.|++||+|||.|.++|.
T Consensus 6 ~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~ 40 (305)
T 4glw_A 6 NELVALLNRYATEYYTSDNPSVSDSEYDRLYRELV 40 (305)
T ss_dssp HC-----------------------------CHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 33444444556788999999999999999998875
No 6
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=89.91 E-value=0.27 Score=44.79 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 95 lge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
+.++..+--.+-.+||..+.|++||+|||.|.++|.
T Consensus 6 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 41 (322)
T 3uq8_A 6 LDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLK 41 (322)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555556667788889999999999999988763
No 7
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=89.70 E-value=0.17 Score=46.13 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=22.1
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHhc
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~~ 175 (238)
-.+|| .|+|+|+|+|||+|..+|+..
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 54 (328)
T 1zau_A 28 QFRYYVRDAPIISDAEFDELLRRLEAL 54 (328)
T ss_dssp HHHHTTTCCCSSCTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 34665 699999999999999999864
No 8
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=89.50 E-value=0.17 Score=46.02 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.5
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHh
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~ 174 (238)
-.+|| .|+|+|+|+|||+|..+|+.
T Consensus 21 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 46 (318)
T 1b04_A 21 GYEYYVLDRPSVPDAEYDRLMQELIA 46 (318)
T ss_dssp HHHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 34665 79999999999999999875
No 9
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=89.49 E-value=0.2 Score=48.76 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.6
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHh
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~ 174 (238)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 19 ~~~Yy~~~~p~IsD~eYD~L~~eL~~ 44 (586)
T 4glx_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (586)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44676 69999999999999999975
No 10
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=89.32 E-value=0.32 Score=44.26 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 94 slge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
.+.++...--++-.+||..+.|++||+|||.|.++|.
T Consensus 7 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 43 (318)
T 3jsl_A 7 RVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELI 43 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3455555556666788889999999999999988764
No 11
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=89.20 E-value=0.34 Score=44.14 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=30.9
Q ss_pred cchhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 93 KSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 93 ~slge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
.-+.++..+--.+-.+||..+.|++||.|||.|.++|.
T Consensus 15 ~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 52 (328)
T 1zau_A 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLE 52 (328)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 34566666666667788999999999999999999975
No 12
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=89.09 E-value=0.37 Score=43.80 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 94 slge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
-+.++..+--.+-.+||..+.|++||.|||.|.++|.
T Consensus 9 ~~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 45 (318)
T 1b04_A 9 RAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELI 45 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3455555555666788889999999999999999975
No 13
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=88.87 E-value=0.41 Score=43.74 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 94 slge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
-+.++...--.+-..||..+.|++||.|||.|.++|.
T Consensus 14 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 50 (332)
T 1ta8_A 14 RAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELV 50 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4555555555666788889999999999999999875
No 14
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=88.55 E-value=0.31 Score=47.46 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 94 slge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
-+.++..+--.+-.+||..+.|++||+|||.|.++|.
T Consensus 7 ~i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~ 43 (586)
T 4glx_A 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (586)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3455555666667788999999999999999998874
No 15
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=83.64 E-value=0.9 Score=44.99 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 94 slge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
-+.++..+--++-.+||..+.|++||.|||.|.++|.
T Consensus 7 ~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~ 43 (671)
T 2owo_A 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3455555556667788999999999999999999875
No 16
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=82.45 E-value=0.49 Score=46.84 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=22.8
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHhcC
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKMEG 176 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~~G 176 (238)
-.+|| .++|+|+|+|||+|..+|+..-
T Consensus 21 ~~~YY~~d~p~isD~eYD~l~~eL~~lE 48 (667)
T 1dgs_A 21 NYRYYVLADPEISDAEYDRLLRELKELE 48 (667)
T ss_dssp HHHHHTTCCCCSCSSSSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 44666 7999999999999999998654
No 17
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=82.06 E-value=0.6 Score=46.24 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=21.8
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHhc
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~~ 175 (238)
-.+|| .|+|+|+|+|||+|..+|+..
T Consensus 19 ~~~YY~~d~p~isD~eYD~L~~eL~~l 45 (671)
T 2owo_A 19 EYLYHVMDAPEIPDAEYDRLMRELREL 45 (671)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44655 699999999999999998763
No 18
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=80.65 E-value=0.96 Score=44.78 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh
Q 026445 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (238)
Q Consensus 95 lge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~ 130 (238)
+.++..+--++-..||..+.|++||.|||.|.++|.
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~ 45 (667)
T 1dgs_A 10 INELRDLIRYHNYRYYVLADPEISDAEYDRLLRELK 45 (667)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555666788999999999999999999875
No 19
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=75.81 E-value=0.35 Score=47.58 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=22.1
Q ss_pred HHhhh-cCCCCCChHHHHHHHHHHHhc
Q 026445 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (238)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~eLk~~ 175 (238)
-.+|| .|+|+|||+|||+|..+|+..
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 54 (615)
T 3sgi_A 28 QFRYYVRDAPIISDAEFDELLRRLEAL 54 (615)
T ss_dssp HHHHHHHSCCCSSCCSSCSSSSHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 45676 799999999999999988754
No 20
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=72.88 E-value=0.79 Score=45.09 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHHhhcCccccChHHHHhHHHHhh-hc
Q 026445 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM-WE 132 (238)
Q Consensus 94 slge~E~~Fl~Al~sfY~~gk~~msdeEfd~LKEeL~-WE 132 (238)
-+.++..+--.+-.+||..+.|++||+|||.|.++|. ||
T Consensus 16 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE 55 (615)
T 3sgi_A 16 QWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALE 55 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 4555555555666788889999999999999987764 44
No 21
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=57.94 E-value=31 Score=26.96 Aligned_cols=67 Identities=21% Similarity=0.466 Sum_probs=46.1
Q ss_pred cCccccChHHHHhHHHHhhhcCCeeEEeChhh-HHHHHH--HHhhhcCCCCCChHHHHHH------HH--HHH-hcCCce
Q 026445 112 EGKAVMSNEEFDNLKEELMWEGSSVVMLSSAE-QKFLEA--SMAYVAGKPIMSDEEYDKL------KQ--KLK-MEGSEI 179 (238)
Q Consensus 112 ~gk~~msdeEfd~LKEeL~WEGSsvv~L~~~E-q~fLEA--~~AY~sGkPimsDeeFD~L------K~--eLk-~~GS~V 179 (238)
.+.++++++.|+.|+.++ +.+. +++|.. ...||+|. |+++.|..- |+ .-+ ..|.+|
T Consensus 12 ~~TFvId~~~Y~kL~nsi----------s~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~ahLAkAl~~fs~~~g~dv 79 (94)
T 3vc8_A 12 LTTFMITKESYCKLKNSV----------SDVAFNRYLSLYNKYRYFSGK--MDTAAYREAACSQLAKAMETFNHNNGNDV 79 (94)
T ss_dssp TSCEEECHHHHHHHHHHS----------CHHHHHHHHHTHHHHHTCCSC--CCHHHHHHHHHHHHHHHHHHHHHHCSCCE
T ss_pred hceEEeccHHHHHHHhhc----------CHHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHHHHHHhhhcCCCce
Confidence 467899999999999982 2222 455554 45699996 899999753 22 233 668999
Q ss_pred eeecCceeecC
Q 026445 180 VVEGPRCSLRS 190 (238)
Q Consensus 180 Vvk~PrCslrs 190 (238)
.-.-|+||+-+
T Consensus 80 LYtPP~~Sv~s 90 (94)
T 3vc8_A 80 LYQPPTASVTT 90 (94)
T ss_dssp EECCSCC----
T ss_pred eeCCCcceeeh
Confidence 99999999864
No 22
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=57.32 E-value=31 Score=27.01 Aligned_cols=67 Identities=18% Similarity=0.359 Sum_probs=49.3
Q ss_pred cCccccChHHHHhHHHHhhhcCCeeEEeChhh-HHHHHH--HHhhhcCCCCCChHHHHHH------H--HHHHhcCCcee
Q 026445 112 EGKAVMSNEEFDNLKEELMWEGSSVVMLSSAE-QKFLEA--SMAYVAGKPIMSDEEYDKL------K--QKLKMEGSEIV 180 (238)
Q Consensus 112 ~gk~~msdeEfd~LKEeL~WEGSsvv~L~~~E-q~fLEA--~~AY~sGkPimsDeeFD~L------K--~eLk~~GS~VV 180 (238)
.|.++++++.|..|+.+ ++.+. +++|.. ...||+|. |+++.|..- | ..-+..|.+|.
T Consensus 17 ~~TFvId~~~Y~kL~n~----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~AhLakAl~~fs~~g~d~L 84 (96)
T 3gzf_A 17 MGTFVIDMRSYETLVNS----------TSLDRIKSYANSFNKYKYYTGS--MGEADYRMACYAHLGKALMDYSVSRNDKL 84 (96)
T ss_dssp HSCEEECHHHHHHHHTT----------TTHHHHHHHHHTHHHHHSCCSC--CCHHHHHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred cceEEEccHHHHHHHhh----------cCHHHHHHHHHHHhhhccccCC--cchHHHHHHHHHHHHHHHHHHhccCCcee
Confidence 35789999999999977 33332 455554 45699996 899999753 1 23456799999
Q ss_pred eecCceeecC
Q 026445 181 VEGPRCSLRS 190 (238)
Q Consensus 181 vk~PrCslrs 190 (238)
-.-|+||+-+
T Consensus 85 YtPP~~Sv~S 94 (96)
T 3gzf_A 85 YTPPTVSVNS 94 (96)
T ss_dssp ECCCEEEEEC
T ss_pred eCCCcccccC
Confidence 9999999865
No 23
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=41.33 E-value=36 Score=26.68 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=48.6
Q ss_pred cccchhHHHHHHHHHHHH---------Hhhc-CccccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCC
Q 026445 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (238)
Q Consensus 91 ~k~slge~E~~Fl~Al~s---------fY~~-gk~~msdeEfd~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (238)
+.-+...+|++-+-+.+. .... .+.-+++++-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 63 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 137 (188)
T 3c1l_A 63 SGLSKLDREMIAVAVSSINHCYYCLTAHGAAVRQLSGDPALGEMLVM--NFRAA---DLSPRQTAMLEFAVKLTEEPAKI 137 (188)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCHHHHHHHHH--CGGGG---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 344556666665554432 1111 123467777777764 48877 37899998888877766544459
Q ss_pred ChHHHHHHHHH
Q 026445 161 SDEEYDKLKQK 171 (238)
Q Consensus 161 sDeeFD~LK~e 171 (238)
+|+.|+.|+..
T Consensus 138 ~d~~~~~l~~~ 148 (188)
T 3c1l_A 138 VEADRAALRKA 148 (188)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 99999998753
No 24
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=40.19 E-value=22 Score=33.08 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhhhcCCCCCCh---------HHHHHHHHHHHhcCCceeeecCceeecCC
Q 026445 142 AEQKFLEASMAYVAGKPIMSD---------EEYDKLKQKLKMEGSEIVVEGPRCSLRSR 191 (238)
Q Consensus 142 ~Eq~fLEA~~AY~sGkPimsD---------eeFD~LK~eLk~~GS~VVvk~PrCslrs~ 191 (238)
|+|-.|-++.++.+|.-.+.+ +-|..+..+|++.|.+|...+-...+.|.
T Consensus 318 D~~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~~~~d~l~I~G~ 376 (455)
T 3rmt_A 318 DEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGP 376 (455)
T ss_dssp GGHHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEEEETTEEEECSC
T ss_pred HHHHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEEEECCEEEEECC
Confidence 778899999999999999998 34666778999999999988777777665
No 25
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=36.07 E-value=40 Score=26.61 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=37.4
Q ss_pred ccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCChHHHHHHHHH
Q 026445 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQK 171 (238)
Q Consensus 116 ~msdeEfd~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~e 171 (238)
-+++++-+.|.. .|.++ .+++.|+.-|+...+......-++|+.|+.|+..
T Consensus 101 G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~ 151 (191)
T 2pfx_A 101 SGDPQLGEMLVM--NYRVA---PLDARQRVMLDFAAKMTRASAEIEEADREVLRSH 151 (191)
T ss_dssp HTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHc
Confidence 467777777764 37777 4789998888877765544335999999998753
No 26
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=31.80 E-value=45 Score=25.19 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=32.1
Q ss_pred ccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCChHHHHHHHHHH
Q 026445 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKL 172 (238)
Q Consensus 116 ~msdeEfd~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~eL 172 (238)
+||-|+|+.|.|.+-.-.+. ..-+...+|...+..|+.+ .++.++.+|
T Consensus 46 l~s~e~ye~l~etl~LL~~~-----~~~~~L~~a~~~~~~G~~~----s~eev~~~l 93 (108)
T 3g5o_A 46 LVGADEWESLQETLYWLAQP-----GIRESIAEADADIASGRTY----GEDEIRAEF 93 (108)
T ss_dssp EEEHHHHHHHHHHHHHHTST-----THHHHHHHHHHHHHHTCEE----CHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHcCCCc----CHHHHHHHh
Confidence 67889999998886543322 2234556666679999986 456677776
No 27
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=30.60 E-value=44 Score=26.53 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=47.2
Q ss_pred cccchhHHHHHHHHHHHH---------Hhhc-CccccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCC
Q 026445 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (238)
Q Consensus 91 ~k~slge~E~~Fl~Al~s---------fY~~-gk~~msdeEfd~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (238)
+.-+...+|++-+-+.+. .... .+.-+++++-+.|... |.++ .+++.|+.-|+...+......-+
T Consensus 67 ~~L~~~~rELi~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~--~~~~---~~~~~era~l~~a~~lt~~~~~v 141 (197)
T 2prr_A 67 GGLTKGEREMIVVATSAANQCLYCVVAHGAILRIYEKKPLVADQVAVN--YLKA---DIPPRQRAMLDFALKVCKASHEV 141 (197)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTHHHHHHHH--GGGS---SCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHh--hhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 344556666665554332 0111 1224677777777643 7777 36899998888877765433359
Q ss_pred ChHHHHHHHH
Q 026445 161 SDEEYDKLKQ 170 (238)
Q Consensus 161 sDeeFD~LK~ 170 (238)
+|+.|+.|+.
T Consensus 142 ~d~~~~~l~~ 151 (197)
T 2prr_A 142 NEADFEALRE 151 (197)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 28
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=29.93 E-value=57 Score=25.86 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=49.2
Q ss_pred cccchhHHHHHHHHHHHH---------Hhhc-CccccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCC
Q 026445 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (238)
Q Consensus 91 ~k~slge~E~~Fl~Al~s---------fY~~-gk~~msdeEfd~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (238)
+.-+..++|++-+-..+. .+.. .+.-+++++-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 71 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 145 (196)
T 2oyo_A 71 GYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAV--NWRHA---DLTEREQALAAYAEKLTRHPAEV 145 (196)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 344556667666655432 1111 122467777777654 48877 36899998888877766544459
Q ss_pred ChHHHHHHHHH
Q 026445 161 SDEEYDKLKQK 171 (238)
Q Consensus 161 sDeeFD~LK~e 171 (238)
+|+.|+.|+..
T Consensus 146 ~d~~~~~l~~~ 156 (196)
T 2oyo_A 146 TAADLEPLRAV 156 (196)
T ss_dssp CGGGGHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 99999998754
No 29
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=29.66 E-value=68 Score=28.46 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=60.8
Q ss_pred hHHHHhHH---HHhhhc-CCeeEEeChhhHHHHHHHHhhhcCCCCCChHH----HHHHHHHHHhcCCceeeecCceeecC
Q 026445 119 NEEFDNLK---EELMWE-GSSVVMLSSAEQKFLEASMAYVAGKPIMSDEE----YDKLKQKLKMEGSEIVVEGPRCSLRS 190 (238)
Q Consensus 119 deEfd~LK---EeL~WE-GSsvv~L~~~Eq~fLEA~~AY~sGkPimsDee----FD~LK~eLk~~GS~VVvk~PrCslrs 190 (238)
.||.+++. +++.-+ +-. +.+-...-+-++|-..+ |.+|+.|-- .+++=.-.+.+|..|++.-. +|
T Consensus 97 ~eE~~RvvpvI~~l~~~~~vp-iSIDT~~~~V~~aAl~a--Ga~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~----~G 169 (297)
T 1tx2_A 97 EEEIKRVVPMIQAVSKEVKLP-ISIDTYKAEVAKQAIEA--GAHIINDIWGAKAEPKIAEVAAHYDVPIILMHN----RD 169 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSCSC-EEEECSCHHHHHHHHHH--TCCEEEETTTTSSCTHHHHHHHHHTCCEEEECC----CS
T ss_pred HHHHHHHHHHHHHHHhcCCce-EEEeCCCHHHHHHHHHc--CCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeC----CC
Confidence 67777766 555433 333 33333344444444333 888886531 23333345778999988653 45
Q ss_pred CceeecchhhHHHHhhhccchhhhhhhhh---hheecccccee
Q 026445 191 RKVYSDLSVDYLKMLLLNVPATVVALGLF---FFLDDITGFEI 230 (238)
Q Consensus 191 ~~vySDae~D~lKm~lL~~pa~vvalG~~---f~~d~~tgfei 230 (238)
.+-|.|--.|....+.. .-......|.- +.+|=.+||.-
T Consensus 170 ~p~y~d~v~ev~~~l~~-~i~~a~~~GI~~~~IilDPg~Gfgk 211 (297)
T 1tx2_A 170 NMNYRNLMADMIADLYD-SIKIAKDAGVRDENIILDPGIGFAK 211 (297)
T ss_dssp CCCCSSHHHHHHHHHHH-HHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred CCCcchHHHHHHHHHHH-HHHHHHHcCCChhcEEEeCCCCcCC
Confidence 55576655555554433 33444578875 89999888844
No 30
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=28.64 E-value=1.5e+02 Score=28.30 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=65.9
Q ss_pred hHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCCh-----HHHHHHHHHHHhcCCceeeecCceeecCCce
Q 026445 119 NEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSD-----EEYDKLKQKLKMEGSEIVVEGPRCSLRSRKV 193 (238)
Q Consensus 119 deEfd~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPimsD-----eeFD~LK~eLk~~GS~VVvk~PrCslrs~~v 193 (238)
.||+.++-..+.-+-.-.+.+-...-+-++|-..++.|++|+.| +.|+++=.-.+.+|..||+...+ +. .
T Consensus 369 ~ee~~rvv~~i~~~~~vpisIDT~~~~v~eaal~~~~G~~iINdis~~~~~~~~~~~~~~~~g~~vV~m~~~----~~-~ 443 (566)
T 1q7z_A 369 VRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLMG----KD-V 443 (566)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESCS----SS-C
T ss_pred HHHHHHHHHHHHhhCCceEEEeCCCHHHHHHHHHhcCCCCEEEECCcchhhHHHHHHHHHHhCCeEEEEeCC----CC-C
Confidence 66777766666444233455666666777776665699999987 55667666678899999996542 21 1
Q ss_pred eecchhhHHHHhhhccchhhhhhhh--hhheeccc---ccee
Q 026445 194 YSDLSVDYLKMLLLNVPATVVALGL--FFFLDDIT---GFEI 230 (238)
Q Consensus 194 ySDae~D~lKm~lL~~pa~vvalG~--~f~~d~~t---gfei 230 (238)
-.+. .|. .-++...-......|. .+.+|=.+ ||..
T Consensus 444 p~t~-~~~-~~~l~~~~~~a~~~Gi~~~IilDPg~~~igfgk 483 (566)
T 1q7z_A 444 PKSF-EER-KEYFEKALKILERHDFSDRVIFDPGVLPLGAEG 483 (566)
T ss_dssp CCSH-HHH-HHHHHHHHHHHHHTTCGGGEEEECCCCCTTTTC
T ss_pred cCCH-HHH-HHHHHHHHHHHHHCCCCCcEEEeCCCCcccCcH
Confidence 0111 122 2233334455567887 48889888 8876
No 31
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=27.91 E-value=1.8e+02 Score=23.19 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=34.6
Q ss_pred HhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCChHHHHHHHHHHHhcCCc-eeeec
Q 026445 123 DNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSE-IVVEG 183 (238)
Q Consensus 123 d~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~eLk~~GS~-VVvk~ 183 (238)
+.+++++ +....+++.+..|-+.|- |.++-+.++..+.-.+|...|.+ |++++
T Consensus 121 ~~~~~~l-l~~~dil~pN~~E~~~L~-------g~~~~~~~~~~~~a~~l~~~g~~~vvvt~ 174 (258)
T 1ub0_A 121 AALKERL-FPLADLVTPNRLEAEALL-------GRPIRTLKEAEEAAKALLALGPKAVLLKG 174 (258)
T ss_dssp HHHHHHT-GGGCSEECCBHHHHHHHH-------CSCCCSHHHHHHHHHHHHTTSCSCEEEEE
T ss_pred HHHHHhh-cccCeEEeCCHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4555554 345678999988876653 66666666666666677778875 66653
No 32
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus islandicus}
Probab=27.88 E-value=22 Score=33.08 Aligned_cols=67 Identities=22% Similarity=0.448 Sum_probs=34.9
Q ss_pred HHHhhcCcc-ccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCChHHHHHHHHHHHhcCCceeeecCc
Q 026445 107 QAFYYEGKA-VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPR 185 (238)
Q Consensus 107 ~sfY~~gk~-~msdeEfd~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~eLk~~GS~VVvk~Pr 185 (238)
..+-++.+. .-+.++|+.|||| +..|-+||+| |+++.++=++=.+-.+.+--
T Consensus 209 ~~w~~~~~~~~~~~~~~~~~~~e---------------------~~k~~~~k~~------~~~~~~~c~~~~~~~~~~~~ 261 (335)
T 3m1m_A 209 KEWLEGKKEEEDTVVEFEELRKE---------------------LVKRDSGKPV------EKIKEEICTKSPPKLIKEII 261 (335)
T ss_dssp HHHHCC-----------CHHHHH---------------------HHHHCCCCCH------HHHHHHHHTSCCCHHHHHHH
T ss_pred HHHhcCcccccccHHHHHHHHHH---------------------HHhhcCCCcH------HHHHHHHHHhhhhhceeeee
Confidence 344444443 3356677777776 3346677775 56666665544444333444
Q ss_pred eeecCCceeecchhhHHH
Q 026445 186 CSLRSRKVYSDLSVDYLK 203 (238)
Q Consensus 186 Cslrs~~vySDae~D~lK 203 (238)
| -++.|+|...|..+
T Consensus 262 c---~~k~y~~~~~drsr 276 (335)
T 3m1m_A 262 C---ENKTYADVNIDRSR 276 (335)
T ss_dssp T---SCCCTTTTTCCHHH
T ss_pred e---cCCchhhccccccc
Confidence 4 46789999999876
No 33
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=24.90 E-value=2.1e+02 Score=26.07 Aligned_cols=68 Identities=16% Similarity=0.350 Sum_probs=47.5
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC----------CCCChHHHHHHHHH
Q 026445 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK----------PIMSDEEYDKLKQK 171 (238)
Q Consensus 117 msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~A----Y~sGk----------PimsDeeFD~LK~e 171 (238)
+.|.+.|..=+.+.| .| ++|++-...-.+|++++.. ++-|. |+++..++++++.-
T Consensus 261 ~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~~gpli~~~~~~rv~~~ 340 (479)
T 2imp_A 261 MDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQK 340 (479)
T ss_dssp CTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGHHHHHHHHHHHHHTCCBSCTTTCSSCSBCCCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhHHHHHHHHHHHHHhcccCCccccCCCccCCCcCHHHHHHHHHH
Confidence 356677777777777 34 4556666666788888654 33343 68899999999987
Q ss_pred HHh---cCCceeeecC
Q 026445 172 LKM---EGSEIVVEGP 184 (238)
Q Consensus 172 Lk~---~GS~VVvk~P 184 (238)
+.. +|.+++.-|.
T Consensus 341 i~~a~~~Ga~~~~gG~ 356 (479)
T 2imp_A 341 VARAVEEGARVAFGGK 356 (479)
T ss_dssp HHHHHHTTCEEEECCC
T ss_pred HHHHHHCCCEEEECCc
Confidence 754 5888877554
No 34
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=24.27 E-value=1.1e+02 Score=27.88 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=43.7
Q ss_pred ccChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHhhhc---C-----CCCCChHHHHHHHHHHHhcC
Q 026445 116 VMSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMAYVA---G-----KPIMSDEEYDKLKQKLKMEG 176 (238)
Q Consensus 116 ~msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~AY~s---G-----kPimsDeeFD~LK~eLk~~G 176 (238)
++.|.+.|.--+.+.| .| ++|++-.+.-.+|++++....+ + -|+++.++|++++.-+...+
T Consensus 245 V~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~p~~~~~gpli~~~~~~rv~~~i~~a~ 324 (457)
T 3lns_A 245 VLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPEINSTGKLVTERQVQRLVSLLEATQ 324 (457)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHHHHHHHHHCCSTTTTCCCSSHHHHHHHHHHHHHCC
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHHHHHHHHHHHHHHhcCCCcccccCCCCHHHHHHHHHHHHhcC
Confidence 3446666666666665 44 3445555555678877554322 2 28999999999999998876
Q ss_pred Cceeeec
Q 026445 177 SEIVVEG 183 (238)
Q Consensus 177 S~VVvk~ 183 (238)
-.++.-|
T Consensus 325 ~~~~~gg 331 (457)
T 3lns_A 325 GQVLVGS 331 (457)
T ss_dssp SEEEECC
T ss_pred CeEEeCC
Confidence 5555433
No 35
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=23.60 E-value=1e+02 Score=24.14 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=40.8
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCceeeecCceeecCCceeecchhhHHHHhhhc--------cchhhhhhhhhhheec-c
Q 026445 155 AGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLN--------VPATVVALGLFFFLDD-I 225 (238)
Q Consensus 155 sGkPimsDeeFD~LK~eLk~~GS~VVvk~PrCslrs~~vySDae~D~lKm~lL~--------~pa~vvalG~~f~~d~-~ 225 (238)
....+|+.+.|++|+..|...... ......++.-.|.+ .|..+|.+|...-+-| -
T Consensus 6 ~~~i~iT~~d~~rL~~~l~~~~~~----------------~~~~~~~L~~~L~~A~vi~~~~~~~~~V~~Gs~V~l~d~~ 69 (141)
T 2pn0_A 6 KPKIMISSLDAERLEILLETLSQN----------------AFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVES 69 (141)
T ss_dssp CCCCEEEHHHHHHHHHHHHHTTTC----------------CCTTHHHHHHHHHTCEEECGGGSCTTBCCTTCEEEEEETT
T ss_pred CCceEECHHHHHHHHHHHHhhhhc----------------ChHHHHHHHHHHhcCEEECCccCCCCEEEeCcEEEEEECC
Confidence 345678888999999888765421 11112333333322 2456789998887744 4
Q ss_pred ccceeeeeee
Q 026445 226 TGFEITYLLE 235 (238)
Q Consensus 226 tgfei~~l~e 235 (238)
+|-+.+|.|=
T Consensus 70 ~g~~~~~~iV 79 (141)
T 2pn0_A 70 SAEEFCLTLV 79 (141)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 8988888763
No 36
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=23.52 E-value=2.4e+02 Score=26.04 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=47.6
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCChHHHHHHHHHH
Q 026445 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL 172 (238)
Q Consensus 117 msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~A----Y~sGk---------PimsDeeFD~LK~eL 172 (238)
+.|.+.|..=+.+.| .| +++++-...-.+|++++.. ++-|. |+++.+++++++.-+
T Consensus 273 ~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i 352 (503)
T 1a4s_A 273 FKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFV 352 (503)
T ss_dssp CTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHHHHHHHHHHHHHHhcCCCCCcccCCccCCCcCHHHHHHHHHHH
Confidence 446677777777776 23 5666666666788888654 34454 689999999999887
Q ss_pred H---hcCCceeeecC
Q 026445 173 K---MEGSEIVVEGP 184 (238)
Q Consensus 173 k---~~GS~VVvk~P 184 (238)
. .+|.+++.-|.
T Consensus 353 ~~a~~~Ga~~~~gG~ 367 (503)
T 1a4s_A 353 AQAKKEGARVLCGGE 367 (503)
T ss_dssp HHHHHHTCEEEECCS
T ss_pred HHHHHCCCEEEeCCc
Confidence 5 46888877554
No 37
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=23.25 E-value=2.3e+02 Score=26.24 Aligned_cols=68 Identities=13% Similarity=0.280 Sum_probs=46.8
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCChHHHHHHHHHH
Q 026445 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL 172 (238)
Q Consensus 117 msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~A----Y~sGk---------PimsDeeFD~LK~eL 172 (238)
+.|.+.|..=+.+.| .| +++++-...-.+|++++.. ++-|. |+++..++++++.-+
T Consensus 277 ~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~rv~~~i 356 (495)
T 1wnd_A 277 FDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAV 356 (495)
T ss_dssp CTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHHTCCBCCTTSTTCCBCCCSCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhHHHHHHHHHHHHHhccCCCCccCCCCccCCCCHHHHHHHHHHH
Confidence 346666666666666 33 5566666666788888654 44454 689999999999887
Q ss_pred Hh---cC-CceeeecC
Q 026445 173 KM---EG-SEIVVEGP 184 (238)
Q Consensus 173 k~---~G-S~VVvk~P 184 (238)
.. .| .+++.-|.
T Consensus 357 ~~a~~~G~a~~~~gG~ 372 (495)
T 1wnd_A 357 EEAKATGHIKVITGGE 372 (495)
T ss_dssp HHHHHTSSCEEEECCS
T ss_pred HHHHhCCCeEEEECCc
Confidence 65 58 88877554
No 38
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=22.03 E-value=2.8e+02 Score=25.52 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=47.9
Q ss_pred ccChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCChHHHHHHHHH
Q 026445 116 VMSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQK 171 (238)
Q Consensus 116 ~msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~A----Y~sGk---------PimsDeeFD~LK~e 171 (238)
++.|.+.|.-=+.+.| .| ++|++-.+.-.+|++++.. ++-|. |+++..++++++.-
T Consensus 240 V~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~ 319 (484)
T 3ros_A 240 VLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEKLEAQ 319 (484)
T ss_dssp ECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCHHHHHHHHHH
Confidence 3457777777777777 33 4556666656778887654 44453 67999999999876
Q ss_pred HH---hcCCceeeecC
Q 026445 172 LK---MEGSEIVVEGP 184 (238)
Q Consensus 172 Lk---~~GS~VVvk~P 184 (238)
+. ..|.+++.-|.
T Consensus 320 i~~a~~~Ga~v~~gG~ 335 (484)
T 3ros_A 320 VKEAIDAGAKVFYQYP 335 (484)
T ss_dssp HHHHHHTTCEEEEECC
T ss_pred HHHHHHcCCeEEecCC
Confidence 64 47888887664
No 39
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=21.09 E-value=1.7e+02 Score=27.06 Aligned_cols=68 Identities=15% Similarity=0.356 Sum_probs=46.2
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCChHHHHHHHHHH
Q 026445 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL 172 (238)
Q Consensus 117 msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~A----Y~sGk---------PimsDeeFD~LK~eL 172 (238)
+.|.+.|..=+.+.| .| +++++-...-.+|++++.. ++-|. |+++.+++++++.-+
T Consensus 264 ~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~rv~~~i 343 (495)
T 3b4w_A 264 LEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYI 343 (495)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGHHHHHHHHHHHHHHSCBCCTTCTTCCBCCCSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcCCCCCccCCCccCCCcCHHHHHHHHHHH
Confidence 346666666666666 34 3555555556778877553 55564 589999999999887
Q ss_pred Hh---cCCceeeecC
Q 026445 173 KM---EGSEIVVEGP 184 (238)
Q Consensus 173 k~---~GS~VVvk~P 184 (238)
.. .|.+++.-|.
T Consensus 344 ~~a~~~Ga~~~~gG~ 358 (495)
T 3b4w_A 344 AKGIEEGARLVCGGG 358 (495)
T ss_dssp HHHHHTTCEEEECCS
T ss_pred HHHHhCCCEEEecCc
Confidence 54 5888877554
No 40
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=20.53 E-value=3.5e+02 Score=22.20 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=33.8
Q ss_pred HhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCC-CCCChHHHHHHHHHHHhcCCc-eeeec
Q 026445 123 DNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGK-PIMSDEEYDKLKQKLKMEGSE-IVVEG 183 (238)
Q Consensus 123 d~LKEeL~WEGSsvv~L~~~Eq~fLEA~~AY~sGk-PimsDeeFD~LK~eLk~~GS~-VVvk~ 183 (238)
+.+++++ +....+++.+..|-+.|- |. ++-+.++..+.-.+|...|.+ |++++
T Consensus 145 ~~l~~~l-l~~~dil~pN~~Ea~~L~-------g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~ 199 (288)
T 1jxh_A 145 ETLRVRL-LPQVSLITPNLPEAAALL-------DAPHARTEQEMLAQGRALLAMGCEAVLMKG 199 (288)
T ss_dssp HHHHHHT-GGGCSEEECBHHHHHHHH-------TCCCCCSHHHHHHHHHHHHHTTCSEEEEBC
T ss_pred HHHHHHH-HhhCcEEcCCHHHHHHHc-------CCCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 4465543 356679999999877663 55 555656666655667777765 55554
No 41
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=20.16 E-value=46 Score=30.04 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=41.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCh---------HHHHHHHHHHHhcCCceeeecCceeecC
Q 026445 142 AEQKFLEASMAYVAGKPIMSD---------EEYDKLKQKLKMEGSEIVVEGPRCSLRS 190 (238)
Q Consensus 142 ~Eq~fLEA~~AY~sGkPimsD---------eeFD~LK~eLk~~GS~VVvk~PrCslrs 190 (238)
|+|-.|-++.++.+|.-.+.+ +=|..+..+|++.|.+|...+-...+.|
T Consensus 312 D~~p~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i~~~~d~~~I~g 369 (427)
T 1rf6_A 312 DELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKG 369 (427)
T ss_dssp GGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEEEEECCEEEEeC
Confidence 899999999999999999998 4455677899999999998776666655
No 42
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=20.12 E-value=2.4e+02 Score=26.13 Aligned_cols=68 Identities=26% Similarity=0.488 Sum_probs=45.8
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCChHHHHHHHHHH
Q 026445 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL 172 (238)
Q Consensus 117 msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~A----Y~sGk---------PimsDeeFD~LK~eL 172 (238)
+.|.+.|..=+.+.| .| ++|++-...-.+|++++.. ++-|. |+++..++++++.-+
T Consensus 279 ~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i 358 (501)
T 1bxs_A 279 FADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLI 358 (501)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHHHHHHHHHHHHHTCCCBSCTTSTTCCBCCCSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHHHHHHHHHHHHHHhcCCCCCcccCCccCCCcCHHHHHHHHHHH
Confidence 346666666666666 34 4555555556778888654 33453 789999999998877
Q ss_pred H---hcCCceeeecC
Q 026445 173 K---MEGSEIVVEGP 184 (238)
Q Consensus 173 k---~~GS~VVvk~P 184 (238)
. .+|.+++.-|.
T Consensus 359 ~~a~~~Ga~~~~gG~ 373 (501)
T 1bxs_A 359 ESGKKEGAKLECGGG 373 (501)
T ss_dssp HHHHHTTCEECSCCS
T ss_pred HHHHhCCCEEEeCCc
Confidence 5 45888776554
No 43
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=20.04 E-value=2.2e+02 Score=26.09 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=43.8
Q ss_pred ccChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCChHHHHHHHHH
Q 026445 116 VMSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQK 171 (238)
Q Consensus 116 ~msdeEfd~LKEeL~W-----EG------Ssvv~L~~~Eq~fLEA~~A----Y~sGk---------PimsDeeFD~LK~e 171 (238)
++.|.+.|.-=+.+.| .| ++|++-.+.-.+|++++.. + .|. |+++..+|++++.-
T Consensus 235 V~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~-~g~~~~~~~~~gpli~~~~~~rv~~~ 313 (469)
T 3sza_A 235 VDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEF-YGEDAKKSRDYGRIISARHFQRVMGL 313 (469)
T ss_dssp ECTTSCHHHHHHHHHHHHHGGGGCCTTSCCEEEECGGGHHHHHHHHHHHHHHH-HCSCGGGCTTCCCCSCHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHhcCCCCCCCCcEEEEehhHHHHHHHHHHHHHHHh-cCCCCcccCcccccCCHHHHHHHHHH
Confidence 3456666666566665 34 4555555555677776443 3 254 68999999999998
Q ss_pred HHhcCCceeeecC
Q 026445 172 LKMEGSEIVVEGP 184 (238)
Q Consensus 172 Lk~~GS~VVvk~P 184 (238)
+ +|.+++.-|.
T Consensus 314 i--~ga~v~~GG~ 324 (469)
T 3sza_A 314 I--EGQKVAYGGT 324 (469)
T ss_dssp H--TTSEEEECCC
T ss_pred H--cCCEEEeCCc
Confidence 8 7888876554
Done!