BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026446
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With Phosphoglycolohydroxamate
 pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With 3-Hydroxy-2-Pyridone
 pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Complex With 3-Hydroxy-2-Pyridone
          Length = 323

 Score = 30.4 bits (67), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 105 SQPALTGVI--VFTSTPDKVSNKYYLGPA--PLEEMARQIATAVGPCGNNRDY-LFKLEK 159
           S+ A+TG I  VF   P+K   + YLGP    + EM      A G  G+  DY +  LE+
Sbjct: 258 SRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHAGDYKVVSLEE 317

Query: 160 A 160
           A
Sbjct: 318 A 318


>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
           D83a Complex With Fructose-1,6-Bisphosphate
 pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
           D83a Complex With Fructose-1,6-Bisphosphate
          Length = 323

 Score = 30.4 bits (67), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 105 SQPALTGVI--VFTSTPDKVSNKYYLGPA--PLEEMARQIATAVGPCGNNRDY-LFKLEK 159
           S+ A+TG I  VF   P+K   + YLGP    + EM      A G  G+  DY +  LE+
Sbjct: 258 SRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHAGDYKVVSLEE 317

Query: 160 A 160
           A
Sbjct: 318 A 318


>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
 pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
 pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Co Tagatose-1,6-Biphosphate
 pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
           Co Tagatose-1,6-Biphosphate
          Length = 323

 Score = 30.4 bits (67), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 105 SQPALTGVI--VFTSTPDKVSNKYYLGPA--PLEEMARQIATAVGPCGNNRDY-LFKLEK 159
           S+ A+TG I  VF   P+K   + YLGP    + EM      A G  G+  DY +  LE+
Sbjct: 258 SRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHAGDYKVVSLEE 317

Query: 160 A 160
           A
Sbjct: 318 A 318


>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
          Length = 118

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 47  HPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTL-VDFYREGEPS 105
           +P R  +LE+ +  +   + + VRG P      + +L   +   +SK + V++Y+EGE S
Sbjct: 7   YPPRVVSLEEPELRLEHCIEFVVRGNPPP---TLHWLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 106 QPALTGVIVFTSTPDKVSNKYY 127
           +    G ++F + P   +N  Y
Sbjct: 64  E----GCLLF-NKPTHYNNGNY 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,612,678
Number of Sequences: 62578
Number of extensions: 318410
Number of successful extensions: 547
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 6
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)