BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026446
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KMJ1|CHAC2_DANRE Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2
PE=2 SV=1
Length = 182
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETIC 62
WVFGYGSL+W F Y++K +GF+K + R F DHRG P P R TL + E
Sbjct: 1 MWVFGYGSLIWKVDFPYEDKRVGFVKGFSRRFWQGSTDHRGVPGKPGRVVTLIEDPEGCV 60
Query: 63 WGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKV 122
WGVAY + G E+E EYL+ RE V F+ + E QP ++ S
Sbjct: 61 WGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQPMQDTLLYIGS----C 114
Query: 123 SNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161
N YLGPAPLE +A+QI +VGP G N DYLF+L A+
Sbjct: 115 DNPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADAL 153
>sp|Q5ZI66|CHAC2_CHICK Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2
PE=2 SV=1
Length = 186
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 91/162 (56%), Gaps = 7/162 (4%)
Query: 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETIC 62
WVFGYGSL+W F Y EK++G I+ Y R F DHRG P P R TL + E
Sbjct: 1 MWVFGYGSLIWKVDFPYQEKMVGRIRGYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCV 60
Query: 63 WGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKV 122
WGVAY + G E E A YL+ RE T V FY + +P V+++ T D
Sbjct: 61 WGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKDSSIKPF--DVLLYIGTRD-- 114
Query: 123 SNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDI 164
N YLGPAPL+E+A QI AVGP G N +YLF+L +M ++
Sbjct: 115 -NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNL 155
>sp|Q5PPV4|CHAC2_XENLA Cation transport regulator-like protein 2 OS=Xenopus laevis
GN=chac2 PE=2 SV=1
Length = 184
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 92/161 (57%), Gaps = 7/161 (4%)
Query: 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICW 63
WVFGYGSL+W F Y EK++G+I Y R F DHRG P P R TL + E W
Sbjct: 2 WVFGYGSLIWKVDFPYVEKLVGYIMCYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVW 61
Query: 64 GVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVS 123
GVAY + G E+E A YL+ RE + V FY + QP V+++ T D
Sbjct: 62 GVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQP--FNVLLYIGTCD--- 114
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDI 164
N YLGPAPLE++A QI AVGP G N +YLF+L ++ ++
Sbjct: 115 NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNL 155
>sp|Q641Z5|CHAC2_RAT Cation transport regulator-like protein 2 OS=Rattus norvegicus
GN=Chac2 PE=2 SV=1
Length = 178
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 7/158 (4%)
Query: 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICW 63
WVFGYGSL+W F Y +K++G+I +Y R F DHRG P P R TL + W
Sbjct: 2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVW 61
Query: 64 GVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVS 123
GVAY + G E+E YL+ RE T V FY + ++P V+++ T D
Sbjct: 62 GVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD--- 114
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161
N YLGPAPLE++A QI A GP G N +YLF+L ++
Sbjct: 115 NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSI 152
>sp|Q9CQG1|CHAC2_MOUSE Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2
PE=2 SV=1
Length = 178
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 7/158 (4%)
Query: 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICW 63
WVFGYGSL+W F Y +K++G+I +Y R F DHRG P P R TL + W
Sbjct: 2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVW 61
Query: 64 GVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVS 123
GVAY + G E+E YL+ RE T V FY + ++P V+++ T D
Sbjct: 62 GVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD--- 114
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161
N YLGPAPLE++A QI A GP G N +YLF+L ++
Sbjct: 115 NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSV 152
>sp|Q8WUX2|CHAC2_HUMAN Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2
PE=2 SV=1
Length = 184
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 92/161 (57%), Gaps = 7/161 (4%)
Query: 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICW 63
WVFGYGSL+W F Y +K++G+I +Y R F DHRG P P R TL + W
Sbjct: 2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCVW 61
Query: 64 GVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVS 123
GVAY + G E+E A YL+ RE T V FY + ++P V+++ T D
Sbjct: 62 GVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDPTTKPF--SVLLYIGTCD--- 114
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDI 164
N YLGPAPLE++A QI A GP G N +YLF+L ++ ++
Sbjct: 115 NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNL 155
>sp|Q8R3J5|CHAC1_MOUSE Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1
PE=1 SV=2
Length = 223
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 91/163 (55%), Gaps = 11/163 (6%)
Query: 2 VFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETI 61
W+FGYGSLVW P F Y + +GF++ Y R F HRG+ + P R TL + +E
Sbjct: 33 ALWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDREGC 92
Query: 62 CWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTST 118
WGVAY VRG E+ A++YL RE YD+K V FY + P QP LT + + +T
Sbjct: 93 TWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQP-LT-ALAYVAT 147
Query: 119 PDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161
P N YLGPAP E +A QI G G+N +YL +L M
Sbjct: 148 P---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 187
>sp|B3STU3|CHAC1_RAT Cation transport regulator-like protein 1 OS=Rattus norvegicus
GN=Chac1 PE=2 SV=1
Length = 222
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 90/163 (55%), Gaps = 11/163 (6%)
Query: 2 VFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETI 61
W+FGYGSLVW P F Y + +GF++ Y R F HRG+ + P R TL + E
Sbjct: 32 ALWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGC 91
Query: 62 CWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTST 118
WGVAY VRG E+ A++YL RE YD+K V FY + P QP LT + + +T
Sbjct: 92 TWGVAYQVRG--EQVSEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQP-LT-ALAYVAT 146
Query: 119 PDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161
P N YLGPAP E +A QI G G+N +YL +L M
Sbjct: 147 P---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 186
>sp|Q9BUX1|CHAC1_HUMAN Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1
PE=1 SV=2
Length = 264
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 2 VFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETI 61
W+FGYGSLVW P F Y + +GF++ Y R F HRG+ + P R TL + E
Sbjct: 74 ALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGC 133
Query: 62 CWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTST 118
WGVAY V+G E+ A++YL RE YD+K V FY + P QP + + +T
Sbjct: 134 TWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQP--LKALAYVAT 188
Query: 119 PDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIEINLGFNLGLCLTG 178
P N YLGPAP E +A QI G G+N +YL +L M LC
Sbjct: 189 P---QNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFM-----------QLCGPQ 234
Query: 179 HEDDYIIELANEV 191
+D+++ + + V
Sbjct: 235 AQDEHLAAIVDAV 247
>sp|Q5SPB6|CHAC1_DANRE Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1
PE=2 SV=1
Length = 196
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
Query: 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETIC 62
W+FGYGSLVW P F+Y +G+IK Y+R F HRG + P R TL + +
Sbjct: 13 LWIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLIEEDDVCT 72
Query: 63 WGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTP 119
WGVA+ V G +E L +YL RE Y ++ VDF+ G +QP + +V+ +TP
Sbjct: 73 WGVAFEVTGSQMEESL--KYLNVREAVRGGYLTRA-VDFFPRGT-NQPPVQA-LVYIATP 127
Query: 120 DKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161
D N YLGPA EE+A QIA G G+N +YL +L + M
Sbjct: 128 D---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAEFM 166
>sp|Q0IIH4|CHAC2_BOVIN Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2
PE=2 SV=1
Length = 176
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 85/158 (53%), Gaps = 19/158 (12%)
Query: 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICW 63
WVFGYGSL+W F Y +K++G+I Y R F DHRG P + W
Sbjct: 2 WVFGYGSLIWKVDFPYQDKLVGYISGYSRRFWQGSTDHRGVPGKGS------------VW 49
Query: 64 GVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVS 123
GVAY + G E+E A YL+ RE T V FY + ++P V+++ T D
Sbjct: 50 GVAYKLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDSTTEP--FSVLLYIGTRD--- 102
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161
N YLGPAPLE++A QI A GP G N +YLF+L +M
Sbjct: 103 NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSM 140
>sp|P87305|CHAC_SCHPO Cation transport regulator-like protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC31F10.03 PE=3
SV=1
Length = 203
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 92/208 (44%), Gaps = 33/208 (15%)
Query: 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETI- 61
WVFGYGSL+W+P YD I FIK Y R F + DHRGT P TL +E
Sbjct: 10 LWVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQ 69
Query: 62 ------------CWGVAYCVRGGPEKERLAM-EYLERRECEYDSKTLVDFYREGEPSQPA 108
CWG+A+ + P K + EYL+ RE + V Y P
Sbjct: 70 FSDWSFTPFDEGCWGMAFRI---PAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPV 126
Query: 109 LTGVIVFTSTPDKVSNKYYLGPA-PLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIEIN 167
L +V+ T S P+ L +MA+ I+T G G+N YLF+L K + +
Sbjct: 127 LENCLVYVGT----SKSPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCLRHLSPE 182
Query: 168 LGFNLGLCLTGHEDDYIIELANEVRKEL 195
+D ++ EL EVRK++
Sbjct: 183 -----------SKDIHVFELEAEVRKQM 199
>sp|P32656|CHAC_YEAST Cation transport regulator-like protein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YER163C PE=1 SV=1
Length = 232
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 42/204 (20%)
Query: 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTL-------- 54
WV GYGSL++ P Y +I I + R F + DHRGTP +P R TL
Sbjct: 8 IWVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIR 67
Query: 55 -----------------EKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVD 97
+ + + GV Y + PE + EYL RE + V+
Sbjct: 68 QTAFLKNVNLYSESAPIQDPDDLVTIGVVYYI--PPEHAQEVREYLNVREQNGYTLHEVE 125
Query: 98 FYREGEPSQPALTG---------------VIVFTSTPDKVSNKYYLGPAPLEEMARQIAT 142
+ E A G V++ + + N+ ++GP ++E A+ IA
Sbjct: 126 VHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETVDETAKVIAV 185
Query: 143 AVGPCGNNRDYLFKLEKAMFDIEI 166
+ GP G+N +YL KLE+A+ + I
Sbjct: 186 SHGPSGSNYEYLAKLEQALAQMPI 209
>sp|P39163|CHAC_ECOLI Cation transport protein ChaC OS=Escherichia coli (strain K12)
GN=chaC PE=3 SV=3
Length = 231
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 82/193 (42%), Gaps = 22/193 (11%)
Query: 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICW 63
W+FGYGSL+WNP E+ E G + + R F L RGT P R L++ T
Sbjct: 48 WIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT-- 105
Query: 64 GVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVS 123
GVAY + PE E L E + E + + + + + IVF P
Sbjct: 106 GVAYRL---PE-ETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDP---R 158
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDY 183
+ Y + +A IA A GP G N YLF LE+ + + G +DD
Sbjct: 159 HPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKL-------------GMQDDG 205
Query: 184 IIELANEVRKELG 196
+ +L V+K L
Sbjct: 206 LNDLLVSVKKLLA 218
>sp|A1U2C3|SYT_MARAV Threonine--tRNA ligase OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=thrS PE=3 SV=1
Length = 641
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 96 VDFYREGE-------PSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCG 148
+ FYR+G+ P P+ + F T KV+ Y+ G E++ R TA G
Sbjct: 169 LSFYRQGDFIDLCRGPHVPSTGKLKAFKLT--KVAGAYWRGDTSNEQLQRIYGTAWGNKK 226
Query: 149 NNRDYLFKLEKAMFDIEINLGFNLGL 174
+ + YL +LE+A +G LGL
Sbjct: 227 DLKAYLHRLEEAEKRDHRKIGKKLGL 252
>sp|A5IAK9|SYT_LEGPC Threonine--tRNA ligase OS=Legionella pneumophila (strain Corby)
GN=thrS PE=3 SV=1
Length = 637
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 79 AMEYLERRECEYDSKTLVD--------FYREGE-------PSQPALTGVIVFTSTPDKVS 123
A++Y + EY +K + D YR+G+ P P+ + F T KV+
Sbjct: 144 AIQYFKSLGEEYKAKIIADIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLT--KVA 201
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160
Y+ G + E + R TA + +YLF+LE+A
Sbjct: 202 GAYWRGDSNNEMLQRIYGTAWADKKSLEEYLFRLEEA 238
>sp|Q5ZS05|SYT_LEGPH Threonine--tRNA ligase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=thrS
PE=3 SV=2
Length = 637
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 79 AMEYLERRECEYDSKTLVD--------FYREGE-------PSQPALTGVIVFTSTPDKVS 123
A++Y + EY +K + D YR+G+ P P+ + F T KV+
Sbjct: 144 AIQYFKDLGEEYKAKIIADIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLT--KVA 201
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160
Y+ G + E + R TA + +YLF+LE+A
Sbjct: 202 GAYWRGDSNNEMLQRIYGTAWADKKSLEEYLFRLEEA 238
>sp|Q5X1H3|SYT_LEGPA Threonine--tRNA ligase OS=Legionella pneumophila (strain Paris)
GN=thrS PE=3 SV=1
Length = 637
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 79 AMEYLERRECEYDSKTLVD--------FYREGE-------PSQPALTGVIVFTSTPDKVS 123
A++Y + EY +K + D YR+G+ P P+ + F T KV+
Sbjct: 144 AIQYFKGLGEEYKAKIIADIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLT--KVA 201
Query: 124 NKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160
Y+ G + E + R TA + +YLF+LE+A
Sbjct: 202 GAYWRGDSNNEMLQRIYGTAWADKKSLEEYLFRLEEA 238
>sp|Q9A217|SYL_CAUCR Leucine--tRNA ligase OS=Caulobacter crescentus (strain ATCC 19089 /
CB15) GN=leuS PE=3 SV=1
Length = 861
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 73 PEKERLAMEYLERRECEYDSKTL-VDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPA 131
P+K RL E R SK L F +GE G+ V+T+ PD + ++G A
Sbjct: 213 PDKVRLMQENWIGR-----SKGLRFKFQFDGEAPDGMAEGLEVYTTRPDTLFGASFVGIA 267
Query: 132 PLEEMARQIATA-------VGPCGNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYI 184
P +A Q+A A + C ++E A LG++ GL + D I
Sbjct: 268 PEHPLAEQLAAANPQIQTFIADCRKGGTSEAEIESAE-----KLGYDTGLRVKHPLDPSI 322
Query: 185 ---IELANEVRKELGT 197
+ +AN + + GT
Sbjct: 323 TLPVWIANFILMDYGT 338
>sp|B8GW27|SYL_CAUCN Leucine--tRNA ligase OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=leuS PE=3 SV=1
Length = 861
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 73 PEKERLAMEYLERRECEYDSKTL-VDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPA 131
P+K RL E R SK L F +GE G+ V+T+ PD + ++G A
Sbjct: 213 PDKVRLMQENWIGR-----SKGLRFKFQFDGEAPDGMAEGLEVYTTRPDTLFGASFVGIA 267
Query: 132 PLEEMARQIATA-------VGPCGNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYI 184
P +A Q+A A + C ++E A LG++ GL + D I
Sbjct: 268 PEHPLAEQLAAANPQIQTFIADCRKGGTSEAEIESAE-----KLGYDTGLRVKHPLDPSI 322
Query: 185 ---IELANEVRKELGT 197
+ +AN + + GT
Sbjct: 323 TLPVWIANFILMDYGT 338
>sp|A4SF00|KTHY_PROVI Thymidylate kinase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=tmk PE=3 SV=1
Length = 215
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 90 YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGN 149
+DS T Y G P L +I ++ K +YL P E + R+ + P
Sbjct: 94 FDSTTAYQGYGRG-IDLPTLNSIIALSTGGLKPDITFYLDILPEEALIRKFSEKSIPLAF 152
Query: 150 NRDYLFKLEKAMFDI--EINLGFNLGLCLTGHEDDYIIEL-ANEVRKELGTAEKGILKER 206
+ D L ++E++ D ++ G+ C+ E D + + A + +E+ T LKE+
Sbjct: 153 DNDELDRMERSGLDFYRKVYEGYR---CIMQEEPDRFVSINARKSIQEIHTTVTKTLKEQ 209
Query: 207 K 207
+
Sbjct: 210 R 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,326,089
Number of Sequences: 539616
Number of extensions: 4165995
Number of successful extensions: 8245
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8209
Number of HSP's gapped (non-prelim): 29
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)