Query 026446
Match_columns 238
No_of_seqs 167 out of 685
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3182 Predicted cation trans 100.0 1.7E-67 3.7E-72 452.1 18.6 201 1-222 8-208 (212)
2 PF04752 ChaC: ChaC-like prote 100.0 1.8E-66 3.9E-71 444.1 20.8 175 3-193 1-177 (178)
3 COG3703 ChaC Uncharacterized p 100.0 2.6E-58 5.7E-63 393.9 19.9 175 2-197 11-185 (190)
4 PHA03014 hypothetical protein; 99.7 1.9E-15 4.2E-20 128.1 14.9 144 1-193 1-160 (163)
5 cd06661 GGCT_like GGCT-like do 99.7 3.5E-16 7.6E-21 118.1 8.7 92 5-117 1-99 (99)
6 KOG4059 Uncharacterized conser 98.9 9.3E-10 2E-14 93.1 5.1 155 3-189 24-186 (193)
7 PF06094 AIG2: AIG2-like famil 98.8 3.3E-08 7.2E-13 75.5 9.3 98 5-118 1-102 (102)
8 PF13772 AIG2_2: AIG2-like fam 98.8 1.5E-08 3.2E-13 76.3 7.0 80 61-187 1-83 (83)
9 COG2105 Uncharacterized conser 97.5 0.00074 1.6E-08 55.0 8.4 91 5-119 4-101 (120)
10 PF06570 DUF1129: Protein of u 90.3 0.26 5.6E-06 42.9 3.1 53 147-214 3-56 (206)
11 PRK07668 hypothetical protein; 77.5 2.4 5.2E-05 38.7 3.3 55 147-215 3-58 (254)
12 COG4858 Uncharacterized membra 71.8 5 0.00011 35.6 3.7 50 148-211 18-68 (226)
13 KOG4450 Uncharacterized conser 65.4 10 0.00022 32.5 4.1 84 4-100 8-102 (168)
14 KOG4311 Histidinol dehydrogena 50.0 22 0.00048 33.3 3.9 75 45-128 146-230 (359)
15 COG4762 Uncharacterized protei 36.6 18 0.00039 31.0 1.1 10 2-11 99-108 (168)
16 PF03460 NIR_SIR_ferr: Nitrite 27.8 42 0.00091 23.5 1.7 44 150-193 22-68 (69)
17 KOG0188 Alanyl-tRNA synthetase 25.5 29 0.00064 36.5 0.7 61 143-224 171-231 (895)
18 TIGR00290 MJ0570_dom MJ0570-re 24.3 4E+02 0.0086 23.8 7.6 38 127-164 40-84 (223)
19 PF05269 Phage_CII: Bacterioph 22.6 1.3E+02 0.0028 23.4 3.7 49 138-197 27-80 (91)
No 1
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-67 Score=452.09 Aligned_cols=201 Identities=50% Similarity=0.855 Sum_probs=186.5
Q ss_pred CccEEEEccccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCCeEEEEEEEeeCCCcchHHHH
Q 026446 1 MVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAM 80 (238)
Q Consensus 1 ~~~WVFGYGSLiW~p~f~~~e~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l 80 (238)
|++||||||||||||+|+|+++++|+|+||.|||||+|+||||||+.||||+||+++.++.||||||+|++ +++.+++
T Consensus 8 ~~lWVFGYGSLiW~Pgf~y~~~~~gfI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~V~g--~~~~~~l 85 (212)
T KOG3182|consen 8 MALWVFGYGSLIWKPGFHYDESIPGFIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYRVRG--KQASEVL 85 (212)
T ss_pred ceEEEEeecceeecCCCCccccchhhheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEEecc--hhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999996 5788999
Q ss_pred HHHHHHhhcCCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH
Q 026446 81 EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160 (238)
Q Consensus 81 ~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~np~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~ 160 (238)
+||+.||.+||..+.|+|++++..+.|.+..+||||+++ +|+.|+||.|+++||+||++|.||||+|+||||+|+++
T Consensus 86 ~yl~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp---~N~~ylGp~ple~iArqI~t~~GpsG~N~eYLf~La~a 162 (212)
T KOG3182|consen 86 EYLNVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATP---DNEYYLGPAPLEEIARQIVTARGPSGPNREYLFNLAKA 162 (212)
T ss_pred HHHHHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecC---CCccccCCccHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 999999999999999999998877778888999999999 89999999999999999999999999999999999999
Q ss_pred HHHhHhhhccCcCCCCCCCCChhHHHHHHHHHHHhccccccccccccccCCCCCCCCCCCCC
Q 026446 161 MFDIEINLGFNLGLCLTGHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSRMPLTKSHI 222 (238)
Q Consensus 161 L~~l~~~~~~~~~~~~pgi~D~~l~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (238)
|+++ .||+.|+||++|++.|++.+.... . +.+.+ .+++.++..+|.
T Consensus 163 m~~l-----------~p~~~D~hl~eL~~~Vrk~l~~~~---~-~~~al-~~~~~i~~~~~~ 208 (212)
T KOG3182|consen 163 MRQL-----------FPGAEDEHLFELENEVRKYLVESR---P-LVHAL-LEPSGIRVEEKS 208 (212)
T ss_pred HHHc-----------CCCchhHHHHHHHHHHHHHHhccc---h-hhhhh-cccchhhhhhhh
Confidence 9999 899999999999999999876533 2 23444 788888877663
No 2
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=100.00 E-value=1.8e-66 Score=444.09 Aligned_cols=175 Identities=47% Similarity=0.875 Sum_probs=162.8
Q ss_pred cEEEEccccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCCeEEEEEEEeeCCCcchHHHHHH
Q 026446 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEY 82 (238)
Q Consensus 3 ~WVFGYGSLiW~p~f~~~e~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l~~ 82 (238)
+||||||||||||+|+|.|+++|+|+||||+|||+|++||||||+||+|+||++.+++.||||||+|++ +++++++++
T Consensus 1 ~WVFGYGSLiW~p~f~~~e~~~a~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayrv~~--~~~~~~l~~ 78 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYAERRPAYIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYRVPE--EDAEEVLEY 78 (178)
T ss_pred CEEEEeccceeCCCCCccceEEEEecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEEecC--cCHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999888999999999995 677899999
Q ss_pred HHHHhh-cCCCcceEEEEec-CCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH
Q 026446 83 LERREC-EYDSKTLVDFYRE-GEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160 (238)
Q Consensus 83 Ld~RE~-~~y~~~~v~v~~~-~~~~~~~~~~alvYva~~~~~~np~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~ 160 (238)
||.||| ++|.+.++++++. +....+..++|++||+++ +||+|+|+++++++|++|++|+|+||+|.|||++|+++
T Consensus 79 L~~RE~~~Gy~~~~v~~~~~~~~~~~~~~~~al~yv~~~---~n~~y~g~~~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~ 155 (178)
T PF04752_consen 79 LDEREMIGGYTRHWVPFYPEVDTDSGPVIVEALVYVADP---DNPQYLGPLPLEEIARIIATASGPSGSNREYLFNLAEA 155 (178)
T ss_pred HhhcccccccceEEEEEEEeccCCCCceEEEEEEEEecC---CCccccCCCCHHHHHHHHhheECcCcCCHHHHHHHHHH
Confidence 999999 7899999999873 333444456899999999 99999999999999999999999999999999999999
Q ss_pred HHHhHhhhccCcCCCCCCCCChhHHHHHHHHHH
Q 026446 161 MFDIEINLGFNLGLCLTGHEDDYIIELANEVRK 193 (238)
Q Consensus 161 L~~l~~~~~~~~~~~~pgi~D~~l~~L~~~v~~ 193 (238)
|+++ .|+|.|+||++|+++|++
T Consensus 156 L~~~-----------gp~i~D~~l~~L~~~V~~ 177 (178)
T PF04752_consen 156 LREL-----------GPGIRDPHLFALERRVRE 177 (178)
T ss_pred HHHh-----------CCCCCChHHHHHHHHHhh
Confidence 9999 345999999999999986
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-58 Score=393.88 Aligned_cols=175 Identities=34% Similarity=0.554 Sum_probs=158.3
Q ss_pred ccEEEEccccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCCeEEEEEEEeeCCCcchHHHHH
Q 026446 2 VFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAME 81 (238)
Q Consensus 2 ~~WVFGYGSLiW~p~f~~~e~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l~ 81 (238)
.+||||||||||||+|+|.|+++|+++||||+||+.|++||||+++||+|++|+ +||+|+|||||||+ +..+++++
T Consensus 11 ~~WVFgYGSLmW~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~--~GGsc~GvafRip~--~~~~~v~~ 86 (190)
T COG3703 11 ELWVFGYGSLMWNPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLD--RGGSCEGVAYRIPE--AHAEEVLE 86 (190)
T ss_pred CeEEEEecceeecCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEee--CCCcEEEEEEEcCc--hhhHHHHH
Confidence 489999999999999999999999999999999999999999999999999996 59999999999995 68889999
Q ss_pred HHHHHhhcCCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Q 026446 82 YLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161 (238)
Q Consensus 82 ~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~np~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~L 161 (238)
||++|||+ |+.++++.+.+-....+...+|++||+++ +|++|+|+++.+++|.+|+.|+|+||+|.|||++|+++|
T Consensus 87 yL~~RE~~-~t~~y~p~~l~v~~~~g~~~~al~~v~~~---~h~qyag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~~hL 162 (190)
T COG3703 87 YLREREMN-YTLVYVPRWLPVELEGGRRVNALVFVGDR---KHPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQHL 162 (190)
T ss_pred HHHHhhcc-ccceeeeEEEEEecCCCcEEEEEEEEecC---CccccCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 99999996 44445544443333334567899999999 999999999999999999999999999999999999999
Q ss_pred HHhHhhhccCcCCCCCCCCChhHHHHHHHHHHHhcc
Q 026446 162 FDIEINLGFNLGLCLTGHEDDYIIELANEVRKELGT 197 (238)
Q Consensus 162 ~~l~~~~~~~~~~~~pgi~D~~l~~L~~~v~~~~~~ 197 (238)
+++ ||+|+.|+.|...|.+...+
T Consensus 163 ~~~-------------gi~d~~l~~l~~~v~~~~~~ 185 (190)
T COG3703 163 RKL-------------GIRDHNLEDLLELVAALLAE 185 (190)
T ss_pred Hhc-------------CCcchhHHHHHHHHHHHHHH
Confidence 999 99999999999999987654
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.67 E-value=1.9e-15 Score=128.07 Aligned_cols=144 Identities=14% Similarity=0.174 Sum_probs=110.3
Q ss_pred CccEEEEccccccCCCC--------CCCeeeeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCCeEEEEEEEeeCC
Q 026446 1 MVFWVFGYGSLVWNPGF--------EYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGG 72 (238)
Q Consensus 1 ~~~WVFGYGSLiW~p~f--------~~~e~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~ 72 (238)
|-.|+|||||.|+...+ .......|.|.||.=+|... | ...|.++|+++++|+.|||++|+|+.
T Consensus 1 ~~~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~-----~--~~~Ga~ATIvp~~g~~V~Gvlw~i~~- 72 (163)
T PHA03014 1 MYKYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCYS-----K--EIDSVIASIKKDDNGIVFGILYEFNE- 72 (163)
T ss_pred CceEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEecc-----C--CcCCceEEEEECCCCEEEEEEEEeCH-
Confidence 66899999999976654 33445689999776666622 1 23688899999999999999999995
Q ss_pred CcchHHHHHHHHHHhhc---CCCcceEEEEecCCCCCCceeEEEEE--EEecCCCCCCCCCCCCCHHHHHHHHHhccCCC
Q 026446 73 PEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVF--TSTPDKVSNKYYLGPAPLEEMARQIATAVGPC 147 (238)
Q Consensus 73 ~~~~~e~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvY--va~~~~~~np~y~G~~~~e~iA~~Ia~A~G~s 147 (238)
..++.||+.|+. .|.+..|+|.+.++.. ...|++| +.++ .++.+. +.
T Consensus 73 -----~dl~~LD~~EGvp~~~Y~~~~v~V~~~~~~~---~~~a~~Y~~~~~~---~~~~~~-----------------~~ 124 (163)
T PHA03014 73 -----SIMKKFDKQEFIDKNIYKLAKMNVLDLEDEK---IIEAQAYKAILDD---DNNMFY-----------------DA 124 (163)
T ss_pred -----HHHHHHhhhcCCCcCceEEEEEEEEeCCCCc---EEEEEEEehhcCC---Cccccc-----------------CC
Confidence 688999999984 5888899998765322 3579999 6555 443221 12
Q ss_pred CCcHHHHHHHHHHHHHhHhhhccCcCCCCCCC---CChhHHHHHHHHHH
Q 026446 148 GNNRDYLFKLEKAMFDIEINLGFNLGLCLTGH---EDDYIIELANEVRK 193 (238)
Q Consensus 148 G~N~EYL~~L~~~L~~l~~~~~~~~~~~~pgi---~D~~l~~L~~~v~~ 193 (238)
=|+..||.-+.++.++. |+ +.+|+..|.+....
T Consensus 125 ~Ps~~Yl~~I~~Ga~e~-------------Gl~~~P~~Y~~~l~~~~~~ 160 (163)
T PHA03014 125 PNFNIYKDIIIDALIEN-------------NILDYPLWYIKHINNIFKE 160 (163)
T ss_pred CChHHHHHHHHHHHHHh-------------CCCCCcHHHHHHHHHHHHH
Confidence 46779999999999999 99 99999999886654
No 5
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.66 E-value=3.5e-16 Score=118.15 Aligned_cols=92 Identities=21% Similarity=0.143 Sum_probs=77.1
Q ss_pred EEEccccccCCCC-----CCCeeeeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCCeEEEEEEEeeCCCcchHHH
Q 026446 5 VFGYGSLVWNPGF-----EYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLA 79 (238)
Q Consensus 5 VFGYGSLiW~p~f-----~~~e~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~ 79 (238)
||+||||||.+.+ ......+|+++||++.|+..+ ...+|++++++.|+|++|+++. +.
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~-----------~~p~~~~~~~~~v~G~v~~i~~------~~ 63 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS-----------GYPGLVPGPGARVWGELYEVDP------ED 63 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC-----------ccCEEEeCCCCEEEEEEEEECH------HH
Confidence 6999999999988 456778999999999999875 3456667788899999999983 79
Q ss_pred HHHHHHHhhc--CCCcceEEEEecCCCCCCceeEEEEEEE
Q 026446 80 MEYLERRECE--YDSKTLVDFYREGEPSQPALTGVIVFTS 117 (238)
Q Consensus 80 l~~Ld~RE~~--~y~~~~v~v~~~~~~~~~~~~~alvYva 117 (238)
++.||.+|+. .|.+..+++...++. ...|++|+.
T Consensus 64 l~~LD~~E~~~~~Y~r~~v~v~~~~~~----~~~a~~Y~~ 99 (99)
T cd06661 64 LARLDAFEGVPGGYRREEVEVELEDGE----GVEAWVYVA 99 (99)
T ss_pred HHhhhhhcCCCCCeEEEEEEEEeCCCC----EEEEEEEeC
Confidence 9999999996 899999999887532 247899973
No 6
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=9.3e-10 Score=93.10 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=117.6
Q ss_pred cEEEEccccccCCCCCCCe-----eeeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCCeEEEEEEEeeCCCcchH
Q 026446 3 FWVFGYGSLVWNPGFEYDE-----KILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKER 77 (238)
Q Consensus 3 ~WVFGYGSLiW~p~f~~~e-----~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~ 77 (238)
+.+|||||.|--...++.. ..+|.|..|+--|-..|..+ -|-++|+.+.+|..|||++.+++-
T Consensus 24 FlYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W------~G~vATI~~t~GdeVWG~vWKm~~------ 91 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGW------SGSVATIVPTQGDEVWGTVWKMDL------ 91 (193)
T ss_pred hhhhhcccchhhhheeecCCCceeeccccCcceeeecccccccc------ccceeEEecCCCCeEEEEEEEccc------
Confidence 6799999999777665432 35899999999999987764 578999999999999999999995
Q ss_pred HHHHHHHHHhhc---CCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHH
Q 026446 78 LAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYL 154 (238)
Q Consensus 78 e~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~np~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL 154 (238)
+.+.-||..|++ -|.+..|.|.+..+.+ ..|-+|..+. -.-+...|-.++-..|..++-.++.-.||+
T Consensus 92 snl~slDeQEgv~~G~Y~~~~V~V~t~eg~~----itcR~Yl~sn-----l~~~P~~PSp~Yk~~i~~GAkEn~lP~dY~ 162 (193)
T KOG4059|consen 92 SNLPSLDEQEGVSQGIYEPRTVYVKTHEGES----ITCRAYLLSN-----LYELPKQPSPTYKQCIVKGAKENSLPEDYV 162 (193)
T ss_pred ccCccchhhhcccccceEEEEEEEecCCCce----eehhHhhhhh-----hhhccCCCCchHHhhhhhcccccCCcHHHH
Confidence 577889999963 5888888888765433 3466787753 111333566788899999999999999999
Q ss_pred HHHHHHHHHhHhhhccCcCCCCCCCCChhHHHHHH
Q 026446 155 FKLEKAMFDIEINLGFNLGLCLTGHEDDYIIELAN 189 (238)
Q Consensus 155 ~~L~~~L~~l~~~~~~~~~~~~pgi~D~~l~~L~~ 189 (238)
.+|. +++.- .+.|-.|.++..+.+
T Consensus 163 qkL~-aIe~N----------gfaG~V~~~ie~~~k 186 (193)
T KOG4059|consen 163 QKLR-AIEHN----------GFAGQVNSYIERKLK 186 (193)
T ss_pred HHHh-ccccC----------CcccchhhHHHHHHh
Confidence 8763 23322 134778888877765
No 7
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=98.82 E-value=3.3e-08 Score=75.49 Aligned_cols=98 Identities=12% Similarity=-0.045 Sum_probs=63.9
Q ss_pred EEEccccccCCCCCCCee-eeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCC-eEEEEEEEeeCCCcchHHHHHH
Q 026446 5 VFGYGSLVWNPGFEYDEK-ILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQET-ICWGVAYCVRGGPEKERLAMEY 82 (238)
Q Consensus 5 VFGYGSLiW~p~f~~~e~-~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg-~c~GvaYri~~~~~~~~e~l~~ 82 (238)
||.|||||........-. ..+...+........ .+. ..|...+|++++++ .|+|.+|.|+. +.++.
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~yP~l~~~~~~~~V~G~l~~v~~------~~l~~ 68 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLGGR--YLY----GGGGYPALVPGEGSGRVEGELYEVDD------EELAR 68 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEEEE--EEE----TTSSCEEEESCTTSSEEEEEEEEE-H------HHHHH
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEEeE--EEe----CCCCCCEEEEcCCCCEEEEEEEEECH------HHHHh
Confidence 799999999876542211 134444444444411 111 12444566666676 99999999984 56999
Q ss_pred HHHHh--hcCCCcceEEEEecCCCCCCceeEEEEEEEe
Q 026446 83 LERRE--CEYDSKTLVDFYREGEPSQPALTGVIVFTST 118 (238)
Q Consensus 83 Ld~RE--~~~y~~~~v~v~~~~~~~~~~~~~alvYva~ 118 (238)
||..| ...|.+..++|...++.. ..|.+|+.+
T Consensus 69 LD~~E~~~~~Y~R~~v~v~~~~g~~----~~a~vYv~~ 102 (102)
T PF06094_consen 69 LDEYEGEGSLYRRVRVPVELGDGEE----VEAWVYVWN 102 (102)
T ss_dssp HHHHTTTTTSEEEEEEEEECCTSSE----EEEEEEEE-
T ss_pred hHhhcCCCCceEEEEEEEEeCCCCE----eEEEEEEEC
Confidence 99996 468888889998766432 379999863
No 8
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=98.81 E-value=1.5e-08 Score=76.31 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=60.9
Q ss_pred eEEEEEEEeeCCCcchHHHHHHHHHHhhc---CCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHH
Q 026446 61 ICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMA 137 (238)
Q Consensus 61 ~c~GvaYri~~~~~~~~e~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~np~y~G~~~~e~iA 137 (238)
.|||++|+|+. +.++.||++|+. .|++..|+|...++. ...|++|++++ ... +
T Consensus 1 ~V~Gvly~l~~------~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g~----~~~a~tY~~~~---~~~---~-------- 56 (83)
T PF13772_consen 1 RVWGVLYELSE------EDLESLDRYEGVPIGAYRRIEVTVSTADGK----PVEAFTYVANP---KPE---G-------- 56 (83)
T ss_dssp EEEEEEEEEEG------GGHHHHHHHTTTTTTSEEEEEEEEEETTCE----EEEEEEEEESS---EEE------------
T ss_pred CEEEEEEEECH------HHHHHHHHhcCCCCCCEEEEEEEEEcCCCC----EEEEEEEEcCC---CCC---C--------
Confidence 48999999996 588999999983 588888999875432 25799999988 421 1
Q ss_pred HHHHhccCCCCCcHHHHHHHHHHHHHhHhhhccCcCCCCCCCCChhHHHH
Q 026446 138 RQIATAVGPCGNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYIIEL 187 (238)
Q Consensus 138 ~~Ia~A~G~sG~N~EYL~~L~~~L~~l~~~~~~~~~~~~pgi~D~~l~~L 187 (238)
=|+.+||..+.++.++. |++.+|+..|
T Consensus 57 ----------~Ps~~Yl~~i~~GA~e~-------------gLp~~Yv~~L 83 (83)
T PF13772_consen 57 ----------PPSDRYLDLILRGAREH-------------GLPAEYVEKL 83 (83)
T ss_dssp -------------HHHHHHHHHHHHHC-------------T--HHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHc-------------CCCHHHHhhC
Confidence 28899999999999998 8899998876
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00074 Score=55.03 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=59.2
Q ss_pred EEEccccccCCCCC--C--Ce--eeeeEEeceEEEEEeecccCCCCCCCCceeeeEeeCCCCeEEEEEEEeeCCCcchHH
Q 026446 5 VFGYGSLVWNPGFE--Y--DE--KILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERL 78 (238)
Q Consensus 5 VFGYGSLiW~p~f~--~--~e--~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e 78 (238)
||-||||.=...=+ + .. -..+.++||+- .+.. +..|| ++++ .+.|+|=+|+++. +
T Consensus 4 vfVYGTLr~Ge~N~~~~~~~~~~~~~~~~~gy~l----y~lg----~~YP~----~~~g-~~~V~Gevy~~d~------~ 64 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYLKGARFLGEASTKGYQL----YDLG----PGYPG----LVPG-EGKVHGEVYRIDE------E 64 (120)
T ss_pred EEEEeccCCCCcchHHHHhcCcccCcceeeeeee----eccC----CCCcE----EcCC-CCEEEEEEEEECH------H
Confidence 99999997322211 1 11 12466777432 2221 22555 4443 3599999999994 7
Q ss_pred HHHHHHHHhhc-CCCcceEEEEecCCCCCCceeEEEEEEEec
Q 026446 79 AMEYLERRECE-YDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (238)
Q Consensus 79 ~l~~Ld~RE~~-~y~~~~v~v~~~~~~~~~~~~~alvYva~~ 119 (238)
.++.||.=|.. .|.+.+|.+.+..+.. .|++|+.+.
T Consensus 65 ~l~~LDelE~~~~y~r~~v~v~~~~G~~-----~aw~Y~y~~ 101 (120)
T COG2105 65 TLEALDELEDYGGYYRREVEVTTPLGSK-----EAWLYVYAE 101 (120)
T ss_pred HHhhhhhhhccCceEEEEEEEEcCCCCE-----EEEEEEEcC
Confidence 99999999986 3666777777665432 589999988
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=90.31 E-value=0.26 Score=42.86 Aligned_cols=53 Identities=30% Similarity=0.515 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHHHHHhHhhhccCcCCCCCCCCChhHHHHHHHH-HHHhccccccccccccccCCCCC
Q 026446 147 CGNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYIIELANEV-RKELGTAEKGILKERKLVGSSSR 214 (238)
Q Consensus 147 sG~N~EYL~~L~~~L~~l~~~~~~~~~~~~pgi~D~~l~~L~~~v-~~~~~~~~~~~~~~~~~~~~~~~ 214 (238)
+-.|.||++++-..|++- |+.|...+++...+ .++...|.+|. +.+.++| +|.
T Consensus 3 TkkN~~y~~~l~~~L~~~-------------~~~e~~~e~~L~eil~~LleaQk~G~-tA~~lfG-~P~ 56 (206)
T PF06570_consen 3 TKKNQEYIFDLRKYLRSS-------------GVSEEEIEELLEEILPHLLEAQKKGK-TARQLFG-DPK 56 (206)
T ss_pred chHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHHHHHhCCC-cHHHHcC-CHH
Confidence 457999999999999888 99999998885544 45555555666 6899999 663
No 11
>PRK07668 hypothetical protein; Validated
Probab=77.53 E-value=2.4 Score=38.72 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHHHHHHHhHhhhccCcCCCCCCCCChhHHHHHHHHHHH-hccccccccccccccCCCCCC
Q 026446 147 CGNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYIIELANEVRKE-LGTAEKGILKERKLVGSSSRM 215 (238)
Q Consensus 147 sG~N~EYL~~L~~~L~~l~~~~~~~~~~~~pgi~D~~l~~L~~~v~~~-~~~~~~~~~~~~~~~~~~~~~ 215 (238)
+-.|.||+.++...|+.- |+.|...+++...+... ...|++|. +++.++|++|..
T Consensus 3 TkeNeefl~~L~~yL~~~-------------glseeeieeiL~Ei~~hLlEgQk~Gk-TA~~IfG~sPk~ 58 (254)
T PRK07668 3 SKEGRKFLDDTRVYLIAK-------------GIKEEDIESFLEDAELHLIEGEKDGK-TVEDIFGDSPKE 58 (254)
T ss_pred CHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHHHHHHHHcCC-cHHHHhCCCHHH
Confidence 456999999999999887 88999888886666544 34444555 689999997754
No 12
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=71.81 E-value=5 Score=35.61 Aligned_cols=50 Identities=28% Similarity=0.514 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHHHHhHhhhccCcCCCCCCCCChhHHHH-HHHHHHHhccccccccccccccCC
Q 026446 148 GNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYIIEL-ANEVRKELGTAEKGILKERKLVGS 211 (238)
Q Consensus 148 G~N~EYL~~L~~~L~~l~~~~~~~~~~~~pgi~D~~l~~L-~~~v~~~~~~~~~~~~~~~~~~~~ 211 (238)
-.|.||+....++|..- |-.|..+..+ +..+-+++..+.||| +.+||+|-
T Consensus 18 kkNqeyvh~vtkqli~~-------------gksdeeik~Il~e~ipqIleeQkkGi-tARkL~gt 68 (226)
T COG4858 18 KKNQEYVHEVTKQLIGD-------------GKSDEEIKIILEEMIPQILEEQKKGI-TARKLLGT 68 (226)
T ss_pred HHhHHHHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHhhhccc-hHHHHcCC
Confidence 47999999999999988 9999999887 445567777666788 79999993
No 13
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.38 E-value=10 Score=32.55 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=53.8
Q ss_pred EEEEccccccCCCCCCCeeeeeEEeceEEEEEeecccCCCCCCCCceeee-------EeeCC--CCeEEEEEEEeeCCCc
Q 026446 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCT-------LEKSQ--ETICWGVAYCVRGGPE 74 (238)
Q Consensus 4 WVFGYGSLiW~p~f~~~e~~~a~l~Gy~RrF~~~S~~hRGTpe~PGrVlt-------L~~~~--gg~c~GvaYri~~~~~ 74 (238)
-||-||.|=-...=++-=+. .+.|..+-.+++.+. -..| +|.+ |...+ |-.++|=+|.|+.
T Consensus 8 lvFVYGTLKrg~pNh~~L~d--~~~g~A~F~gr~~T~----~kyP-LVigt~ynIPfLLnkpGsG~~V~GElY~Vd~--- 77 (168)
T KOG4450|consen 8 LVFVYGTLKRGQPNHFLLED--LINGDAVFIGRGTTL----LKYP-LVIGTRYNIPFLLNKPGSGYHVEGELYEVDE--- 77 (168)
T ss_pred EEEEEeeecCCCCCchhhhh--ccCCceEEEEeceec----cccc-eEeecccCCceEEcCCCCcceeeeEEEEeCH---
Confidence 69999999655443332211 226776666665443 2344 5555 33233 5579999999994
Q ss_pred chHHHHHHHHHHhh--cCCCcceEEEEe
Q 026446 75 KERLAMEYLERREC--EYDSKTLVDFYR 100 (238)
Q Consensus 75 ~~~e~l~~Ld~RE~--~~y~~~~v~v~~ 100 (238)
.-|..||.-|. ++|.+..+.+..
T Consensus 78 ---rmL~~LD~lE~~~~~Y~R~~i~v~~ 102 (168)
T KOG4450|consen 78 ---RMLSRLDELEGCPNHYEREPIRVIE 102 (168)
T ss_pred ---HHHhhhHhhcccHHHhhhhhhHHHH
Confidence 78899999997 478776655543
No 14
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=49.98 E-value=22 Score=33.34 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=52.6
Q ss_pred CCCCceeeeEeeCCCCeEEEEEEEeeCCCcchHHHHHHHHHHhhcCCCcceEEEEecCCCCCCc----------eeEEEE
Q 026446 45 PQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPA----------LTGVIV 114 (238)
Q Consensus 45 pe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~----------~~~alv 114 (238)
-..-|++.||+-++-|.|-|.+|--.. ..-.-++-+-..||.|.--++|..+..+... -..+|.
T Consensus 146 Dr~dgl~~tlvv~~~g~~Lglvysske------s~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~ 219 (359)
T KOG4311|consen 146 DRKDGLVATLVVVDTGAVLGLVYSSKE------SLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLI 219 (359)
T ss_pred CCCCCeEEEEEehhhhhhhhhhcccHH------HHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceE
Confidence 345578888988889999999997662 3445678888888877555566655433221 125899
Q ss_pred EEEecCCCCCCCCC
Q 026446 115 FTSTPDKVSNKYYL 128 (238)
Q Consensus 115 Yva~~~~~~np~y~ 128 (238)
|++++ ++|-|+
T Consensus 220 f~v~q---~g~gfC 230 (359)
T KOG4311|consen 220 FLVTQ---DGPGFC 230 (359)
T ss_pred EEEec---CCCccc
Confidence 99999 888665
No 15
>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.61 E-value=18 Score=31.04 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=8.7
Q ss_pred ccEEEEcccc
Q 026446 2 VFWVFGYGSL 11 (238)
Q Consensus 2 ~~WVFGYGSL 11 (238)
..|.||||+|
T Consensus 99 ~~~gf~yGTL 108 (168)
T COG4762 99 DVRGFGYGTL 108 (168)
T ss_pred ceeEEeeccc
Confidence 4799999997
No 16
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=27.79 E-value=42 Score=23.49 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHhH---hhhccCcCCCCCCCCChhHHHHHHHHHH
Q 026446 150 NRDYLFKLEKAMFDIE---INLGFNLGLCLTGHEDDYIIELANEVRK 193 (238)
Q Consensus 150 N~EYL~~L~~~L~~l~---~~~~~~~~~~~pgi~D~~l~~L~~~v~~ 193 (238)
+.+.|..+++-.++.+ +.+.-+|++.++|+.++.+.+|.+.+.+
T Consensus 22 ~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 5667777777777652 3455677888999999999999988765
No 17
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.52 E-value=29 Score=36.55 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=41.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhHhhhccCcCCCCCCCCChhHHHHHHHHHHHhccccccccccccccCCCCCCCCCCCCC
Q 026446 143 AVGPCGNNRDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSRMPLTKSHI 222 (238)
Q Consensus 143 A~G~sG~N~EYL~~L~~~L~~l~~~~~~~~~~~~pgi~D~~l~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (238)
++||||||.|--+..+-.=..- . +=.+.||.|.+|.+.|--.-.++..|+ -.|+.+.||
T Consensus 171 dtGPCGPCtEIHyDriG~r~a~--------~--LVN~ddp~v~EiWNlVFiq~NRe~dGs-----------L~pLp~khI 229 (895)
T KOG0188|consen 171 DTGPCGPCTEIHYDRIGGRDAV--------K--LVNHDDPDVLEIWNIVFIQYNREADGS-----------LKPLPKKHI 229 (895)
T ss_pred CCCCCCcchhhhhhhhcCcchH--------H--HhcCCCcCceeeeeeeeeeeccccCCc-----------cccCccccc
Confidence 5899999999887765331111 0 116789999999998876666655443 257777787
Q ss_pred Cc
Q 026446 223 PT 224 (238)
Q Consensus 223 ~~ 224 (238)
-|
T Consensus 230 DT 231 (895)
T KOG0188|consen 230 DT 231 (895)
T ss_pred cc
Confidence 66
No 18
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=24.30 E-value=4e+02 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHHHhccC-------CCCCcHHHHHHHHHHHHHh
Q 026446 127 YLGPAPLEEMARQIATAVG-------PCGNNRDYLFKLEKAMFDI 164 (238)
Q Consensus 127 y~G~~~~e~iA~~Ia~A~G-------~sG~N~EYL~~L~~~L~~l 164 (238)
|.-..+.-++.+..|.|-| ..|++.+|+..+.+.|+++
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~ 84 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTL 84 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHc
Confidence 3333444577788888888 3477899999999999998
No 19
>PF05269 Phage_CII: Bacteriophage CII protein; InterPro: IPR007933 The CII protein is a transcription activator, conserved in bacteriophage lambda and related phages, that plays a key role in the decision between lytic or lysogenic phage development. CII is regulated at multiple levels including transcription, translation initiation, mRNA stability, and proteolysis []. Conditions that stabilise cII favour lysogenic development. The lambda CII protein activates three specific promoters, binding to direct repeat sequences rather than the more usual inverted repeats. Structurally, CII is a homotetramer where each monomer is composed of four alpha helices and a disordered C terminus [, ]. The alpha helical region is responsible for DNA binding and multimerisation. The homotetramer has an unusual spatial arrangement that allows recognition of the direct repeat sequences.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ZS4_C 1ZPQ_C 1XWR_A.
Probab=22.60 E-value=1.3e+02 Score=23.43 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=36.9
Q ss_pred HHHHhccCCCCCc-----HHHHHHHHHHHHHhHhhhccCcCCCCCCCCChhHHHHHHHHHHHhcc
Q 026446 138 RQIATAVGPCGNN-----RDYLFKLEKAMFDIEINLGFNLGLCLTGHEDDYIIELANEVRKELGT 197 (238)
Q Consensus 138 ~~Ia~A~G~sG~N-----~EYL~~L~~~L~~l~~~~~~~~~~~~pgi~D~~l~~L~~~v~~~~~~ 197 (238)
+.+|.+.|.+=+. .+++.+.+.-|..|++ ++.|+.+.++++.+-+.+..
T Consensus 27 ~~vA~~~Gv~eStISR~k~~~~~~~a~lLa~L~~-----------~v~~~~i~~~~~~~~~~l~~ 80 (91)
T PF05269_consen 27 KKVAEAMGVDESTISRWKNDFIEKMAMLLAALEL-----------GVEDSEIARVAKQAAEILTK 80 (91)
T ss_dssp HHHHHHHTSSTTTHHHHHHHHHHHHHHHHHHTTT-----------THHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHhhHHHHHHHHHHHHHh-----------cccccHHHHHHHHHHHHHHh
Confidence 3456666665443 4788888888887732 88999999999999888754
Done!