Query 026449
Match_columns 238
No_of_seqs 182 out of 1158
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02608 L-ascorbate peroxidas 100.0 4.6E-80 1E-84 550.2 24.3 237 1-237 1-237 (289)
2 PLN02879 L-ascorbate peroxidas 100.0 3.8E-76 8.1E-81 517.0 23.1 236 2-237 5-240 (251)
3 PLN02364 L-ascorbate peroxidas 100.0 1.5E-74 3.3E-79 507.5 23.7 236 2-237 4-240 (250)
4 cd00691 ascorbate_peroxidase A 100.0 1.1E-72 2.4E-77 497.1 22.4 235 3-237 1-243 (253)
5 PLN03030 cationic peroxidase; 100.0 1.8E-64 3.9E-69 455.9 15.8 219 7-237 26-301 (324)
6 cd00693 secretory_peroxidase H 100.0 2E-63 4.4E-68 447.5 16.9 210 16-237 17-276 (298)
7 cd00692 ligninase Ligninase an 100.0 2.6E-62 5.7E-67 443.3 21.1 222 15-237 18-268 (328)
8 cd00649 catalase_peroxidase_1 100.0 9.6E-61 2.1E-65 439.9 17.9 231 7-237 32-386 (409)
9 cd00314 plant_peroxidase_like 100.0 1.9E-59 4.2E-64 413.5 20.3 222 16-237 2-251 (255)
10 PF00141 peroxidase: Peroxidas 100.0 5.1E-61 1.1E-65 418.3 9.3 197 17-224 1-230 (230)
11 TIGR00198 cat_per_HPI catalase 100.0 3.1E-57 6.7E-62 440.0 18.0 231 7-237 42-393 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.9E-55 4.1E-60 425.5 17.9 231 7-237 44-399 (726)
13 cd08201 plant_peroxidase_like_ 100.0 5.5E-54 1.2E-58 376.9 14.0 205 26-237 37-260 (264)
14 cd08200 catalase_peroxidase_2 100.0 8.8E-51 1.9E-55 360.7 20.3 230 3-237 3-290 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 4.4E-45 9.6E-50 355.1 20.8 230 3-237 422-703 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.5E-44 5.3E-49 348.4 20.6 231 3-237 428-715 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.8E-39 3.8E-44 302.9 16.1 233 5-237 55-410 (730)
18 COG0376 KatG Catalase (peroxid 99.9 6.3E-21 1.4E-25 179.0 14.7 230 3-237 439-719 (730)
19 PTZ00411 transaldolase-like pr 42.4 43 0.00094 31.0 4.7 58 105-162 179-252 (333)
20 PRK12346 transaldolase A; Prov 36.4 29 0.00063 31.9 2.6 87 74-162 137-241 (316)
21 PF09533 DUF2380: Predicted li 36.0 39 0.00085 28.7 3.0 26 136-161 107-132 (188)
22 PRK12309 transaldolase/EF-hand 34.4 40 0.00088 31.9 3.2 87 74-162 142-246 (391)
23 cd00957 Transaldolase_TalAB Tr 31.2 59 0.0013 29.9 3.7 86 74-161 136-239 (313)
24 PF15656 Tox-HDC: Toxin with a 30.2 34 0.00074 27.1 1.7 47 145-193 22-70 (119)
25 PRK05264 transcriptional repre 29.1 54 0.0012 24.8 2.5 31 207-237 35-67 (105)
26 cd00490 Met_repressor_MetJ Met 28.8 56 0.0012 24.6 2.5 31 207-237 34-66 (103)
27 TIGR00874 talAB transaldolase. 28.8 72 0.0016 29.4 3.8 116 104-231 166-312 (317)
28 PRK13859 type IV secretion sys 28.4 38 0.00082 22.9 1.4 31 94-124 9-42 (55)
29 PF09027 GTPase_binding: GTPas 27.5 25 0.00054 24.9 0.5 12 178-189 31-42 (66)
30 PRK05269 transaldolase B; Prov 27.3 44 0.00095 30.8 2.1 116 105-232 169-313 (318)
31 PRK08570 rpl19e 50S ribosomal 26.6 82 0.0018 26.0 3.3 23 6-28 24-48 (150)
32 cd00481 Ribosomal_L19e Ribosom 26.1 82 0.0018 25.8 3.3 23 6-28 21-45 (145)
33 COG2147 RPL19A Ribosomal prote 25.4 88 0.0019 25.7 3.3 23 6-28 24-48 (150)
34 COG4573 GatZ Predicted tagatos 24.6 72 0.0016 30.0 2.9 53 98-150 154-214 (426)
35 cd01418 Ribosomal_L19e_A Ribos 24.3 93 0.002 25.5 3.3 23 6-28 21-45 (145)
36 COG3060 MetJ Transcriptional r 24.3 82 0.0018 23.5 2.7 31 207-237 35-67 (105)
37 PF04225 OapA: Opacity-associa 24.3 45 0.00098 24.5 1.3 24 137-160 11-34 (85)
38 PF00043 GST_C: Glutathione S- 23.7 1.9E+02 0.004 20.2 4.6 36 72-107 33-73 (95)
39 PTZ00097 60S ribosomal protein 22.0 1.1E+02 0.0023 25.9 3.3 23 6-28 22-46 (175)
40 cd01417 Ribosomal_L19e_E Ribos 21.9 1.1E+02 0.0023 25.6 3.3 23 6-28 21-45 (164)
41 TIGR00875 fsa_talC_mipB fructo 20.1 63 0.0014 27.9 1.6 71 74-153 89-161 (213)
No 1
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=4.6e-80 Score=550.20 Aligned_cols=237 Identities=84% Similarity=1.327 Sum_probs=231.3
Q ss_pred CCCCccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCCchHHHHHHHH
Q 026449 1 MALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCE 80 (238)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~ 80 (238)
|++|++|++|.++|+++|++|+++++++.++|.||||+||||+|||.++++|||||||++++|+++++|.||++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid 80 (289)
T PLN02608 1 MAAPVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCE 80 (289)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHhhCCcCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHCCCCccchhhhcccc
Q 026449 81 EVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGH 160 (238)
Q Consensus 81 ~~k~~~p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaH 160 (238)
+||+++|+|||||||+||||+||+++|||.|+|++||+|+++++++++||+|+.+++++++.|+++||+++|||+|+|||
T Consensus 81 ~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAH 160 (289)
T PLN02608 81 PVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGH 160 (289)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhcCcCCcccccccccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 161 TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 161 tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
|||++||.|+++.|+|+.||.+|||+||++|++++++|+++|+||++|+.|++|+.+|+.||.||+.|+++|+.||+
T Consensus 161 TiG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~ 237 (289)
T PLN02608 161 TLGRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHK 237 (289)
T ss_pred ccccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999988888999999999999999999995569988999999999999999999999999999999999996
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.8e-76 Score=517.04 Aligned_cols=236 Identities=59% Similarity=0.997 Sum_probs=230.3
Q ss_pred CCCccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCCchHHHHHHHHH
Q 026449 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (238)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 81 (238)
+.|.++.+|.++++.++++|.+++.+.+++|.+|||+||||+|||..++.|||||||++..|+++++|.||+.++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~ 84 (251)
T PLN02879 5 SYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDP 84 (251)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHhhCCcCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHCCCCccchhhhccccc
Q 026449 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (238)
Q Consensus 82 ~k~~~p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHt 161 (238)
||+++++|||||||+||+++||+.+|||.|+|++||+|+++++++++||.|+.++++|++.|+++||+++|||||+||||
T Consensus 85 iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHT 164 (251)
T PLN02879 85 IKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHT 164 (251)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhcCcCCcccccccccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 162 LGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 162 iG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
||++||.|+|+.|+|+.||.+|||+||++|+.++++|+|+|+||++|+.|++|+++|++||+||++||++|+.||+
T Consensus 165 iG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~ 240 (251)
T PLN02879 165 LGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHL 240 (251)
T ss_pred ccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995559998999999999999999999999999999999999996
No 3
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.5e-74 Score=507.53 Aligned_cols=236 Identities=57% Similarity=0.984 Sum_probs=228.5
Q ss_pred CCCccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCCchHHHHHHHHH
Q 026449 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (238)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 81 (238)
+.|.++..|.+++++++++|++++++++++|.||||+||||+|||.....|||||||++++|+++++|.||.+++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 83 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDP 83 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHhhCCcCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH-CCCCccchhhhcccc
Q 026449 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGH 160 (238)
Q Consensus 82 ~k~~~p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~-~Gl~~~e~VaL~GaH 160 (238)
||+++++|||||||+||||+||+++|||.|+|++||+|++++.++++||.|+.++++|++.|++ +||+++|||+|+|||
T Consensus 84 ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaH 163 (250)
T PLN02364 84 IREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAH 163 (250)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecce
Confidence 9999999999999999999999999999999999999999999988999999999999999997 699999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhcCcCCcccccccccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 161 TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 161 tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
|||++||.|+++.|+|+.||.+|||+||++|+.++++|+|+|+||++|+.|++|+.+|+.||.|++.|+++|+.||+
T Consensus 164 TiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~ 240 (250)
T PLN02364 164 TLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHM 240 (250)
T ss_pred eeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999999989999999999999999999995569988899999999999999999999999999999999996
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.1e-72 Score=497.10 Aligned_cols=235 Identities=59% Similarity=1.010 Sum_probs=222.6
Q ss_pred CCccChhHHHH-HHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCCchHHHHHHHHH
Q 026449 3 LPVVDTEYLKE-IDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (238)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 81 (238)
+|+|+..|... ++.++++|++++.++.++|.+|||+||||++||++++.|||||++++.+|+++++|.+|.+++++|++
T Consensus 1 ~~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~ 80 (253)
T cd00691 1 APVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEP 80 (253)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHH
Confidence 59999999765 78889999987779999999999999999999999999999999998899999999999889999999
Q ss_pred HHhhCCcCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCC---CCCCCCCCCCChHHHHHHHHHCCCCccchhhhcc
Q 026449 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP---KEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG 158 (238)
Q Consensus 82 ~k~~~p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G 158 (238)
||+++|+|||||||+|||++||+.+|||.|+|++||+|++++. ++++||.|+.++++|++.|+++||+++|||+|+|
T Consensus 81 iK~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG 160 (253)
T cd00691 81 IKKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSG 160 (253)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcc
Confidence 9999999999999999999999999999999999999999987 5788999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhcCc----CCcccccccccccCChhHHHHHHHHhhChHHHHHHHHH
Q 026449 159 GHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGES----EGLLQLPTDKALLEDPEFRRYVELMRMHSLEIMQHHIR 234 (238)
Q Consensus 159 aHtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~----~gll~l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~ 234 (238)
|||||++||.++++.|+|+.||.+|||+||++|+.+++ +++++|+||++|+.|++|+.+|+.||+|+++|+++|+.
T Consensus 161 aHTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~ 240 (253)
T cd00691 161 AHTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAE 240 (253)
T ss_pred cceeecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999998888888889999999999999999984 34555899999999999999999999999999999999
Q ss_pred hhh
Q 026449 235 NFQ 237 (238)
Q Consensus 235 A~~ 237 (238)
||+
T Consensus 241 Am~ 243 (253)
T cd00691 241 AHK 243 (253)
T ss_pred HHH
Confidence 996
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.8e-64 Score=455.94 Aligned_cols=219 Identities=27% Similarity=0.390 Sum_probs=191.0
Q ss_pred ChhHHHH----HHHH-HHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCCh---hhhcCCCCCchHHHHH
Q 026449 7 DTEYLKE----IDKA-RRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNE---EEYSHGSNNGLKIALD 77 (238)
Q Consensus 7 ~~~~~~~----~~~~-~~~v~~-~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~~---~E~~~~~N~gl~~~~~ 77 (238)
..+|+.. +|.+ ++.|++ +.+|++++|++|||+||||| ++||||||++. .|+++++|.+| ++|+
T Consensus 26 ~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~ 97 (324)
T PLN03030 26 RVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYD 97 (324)
T ss_pred ccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHH
Confidence 3555554 3443 444443 66899999999999999999 89999999974 69999999998 6999
Q ss_pred HHHHHHhh----CC-cCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHCCCCc
Q 026449 78 FCEEVKAK----HP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP--KEGRLPDAKRGAPHLRDIFYRMGLSD 150 (238)
Q Consensus 78 ~i~~~k~~----~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~Gl~~ 150 (238)
+|+.+|++ || +|||||||+||||+||.++|||.|+|++||+|+++|. ...+||.|+.++++|++.|+++||+.
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999975 99 9999999999999999999999999999999999875 33589999999999999999999999
Q ss_pred cchhhhcccccCCCCCCCCC-----CCCC-------------------------C-------CCCCCCccCcHHHHHHhh
Q 026449 151 KDIVALSGGHTLGRAHPERS-----GFDG-------------------------P-------WTREPLKFDNSYFVELLN 193 (238)
Q Consensus 151 ~e~VaL~GaHtiG~~~~~~~-----~~~g-------------------------~-------~~~tp~~fDN~Yy~~ll~ 193 (238)
+|||+||||||||++||..+ +|.+ . +..||.+|||+||++|++
T Consensus 178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~ 257 (324)
T PLN03030 178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKN 257 (324)
T ss_pred HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHh
Confidence 99999999999999999532 1110 0 236899999999999999
Q ss_pred cCcCCcccccccccccCChhHHHHHHHHhhCh----HHHHHHHHHhhh
Q 026449 194 GESEGLLQLPTDKALLEDPEFRRYVELMRMHS----LEIMQHHIRNFQ 237 (238)
Q Consensus 194 ~~~~gll~l~sD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~A~~ 237 (238)
++ |+ |+|||+|+.|++|+++|++||.|+ +.|+++|+.||+
T Consensus 258 ~r--Gl--L~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~Amv 301 (324)
T PLN03030 258 GR--GI--LESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMV 301 (324)
T ss_pred cC--CC--cCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 99 98 799999999999999999999875 599999999996
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2e-63 Score=447.46 Aligned_cols=210 Identities=36% Similarity=0.538 Sum_probs=188.6
Q ss_pred HHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCCh------hhhcCCCCCchHHHHHHHHHHHhh---
Q 026449 16 KARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNE------EEYSHGSNNGLKIALDFCEEVKAK--- 85 (238)
Q Consensus 16 ~~~~~v~~-~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~~------~E~~~~~N~gl~~~~~~i~~~k~~--- 85 (238)
.+++.|++ +..+++++|++|||+||||+ ++||||||+++ +|+++++|.++ +++++|+.||++
T Consensus 17 iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~~~e~ 88 (298)
T cd00693 17 IVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RGFDVIDDIKAALEA 88 (298)
T ss_pred HHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-chhHHHHHHHHHHHh
Confidence 34566655 56799999999999999999 79999999863 69999999999 699999999974
Q ss_pred -CC-cCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCCC--CCCCCCCCCChHHHHHHHHHCCCCccchhhhccccc
Q 026449 86 -HP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK--EGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (238)
Q Consensus 86 -~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHt 161 (238)
|| +|||||||+|||++||+++|||.|+|++||+|++++.+ .+.||.|+.+++++++.|+++||+++|||+|+||||
T Consensus 89 ~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHT 168 (298)
T cd00693 89 ACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHT 168 (298)
T ss_pred hCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHheeecccce
Confidence 89 99999999999999999999999999999999987664 368999999999999999999999999999999999
Q ss_pred CCCCCCC----CC-CCCC--------------------CC----------C-CCCCccCcHHHHHHhhcCcCCccccccc
Q 026449 162 LGRAHPE----RS-GFDG--------------------PW----------T-REPLKFDNSYFVELLNGESEGLLQLPTD 205 (238)
Q Consensus 162 iG~~~~~----~~-~~~g--------------------~~----------~-~tp~~fDN~Yy~~ll~~~~~gll~l~sD 205 (238)
||++||. |+ +|.| ++ + .||.+|||+||++|+.++ |+ |+||
T Consensus 169 iG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~--gl--L~SD 244 (298)
T cd00693 169 IGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR--GL--LTSD 244 (298)
T ss_pred eeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc--cC--ccCC
Confidence 9999995 32 3321 11 2 789999999999999998 88 7999
Q ss_pred ccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 206 KALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 206 ~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
|+|+.|++|+++|++||.||+.|+++|+.||+
T Consensus 245 ~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~ 276 (298)
T cd00693 245 QALLSDPRTRAIVNRYAANQDAFFRDFAAAMV 276 (298)
T ss_pred HHhccCccHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.6e-62 Score=443.25 Aligned_cols=222 Identities=27% Similarity=0.398 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHh-CCCc---hHHHHHHHhhhcCCCC-----CCCCCCCCCCCcCCh--hhhcCCCCCchHHHHHHHHHHH
Q 026449 15 DKARRDLRALIA-YKNC---APIMLRLAWHDAGTYD-----VNTKTGGPNGSIRNE--EEYSHGSNNGLKIALDFCEEVK 83 (238)
Q Consensus 15 ~~~~~~v~~~~~-~~~~---a~~~lRl~FHDc~t~d-----~s~~~gG~dgSi~~~--~E~~~~~N~gl~~~~~~i~~~k 83 (238)
..++++|++.+. +.++ ++.+|||+||||++|+ ...+.|||||||++. .|+++++|.||+.+++.|++++
T Consensus 18 ~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~ 97 (328)
T cd00692 18 FDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFH 97 (328)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHH
Confidence 457889988654 5444 6679999999999999 467889999999863 5999999999998888888888
Q ss_pred hhCCcCcHHHHHHHhhhhHHhhC-CCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHCCCCccchhhhcccccC
Q 026449 84 AKHPKITYADLYQLAGVVAVEVT-GGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTL 162 (238)
Q Consensus 84 ~~~p~VS~ADiialaa~~av~~~-GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHti 162 (238)
++++ |||||||+|||++||+.| |||.|+|++||+|++++.++++||.|+.++++|++.|+++||+.+|||+|+|||||
T Consensus 98 e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTi 176 (328)
T cd00692 98 QKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSV 176 (328)
T ss_pred HhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 8765 999999999999999965 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC-CCCCCCCccCcHHHHHHh-hcCc---------------CCcccccccccccCChhHHHHHHHHhhCh
Q 026449 163 GRAHPERSGFDG-PWTREPLKFDNSYFVELL-NGES---------------EGLLQLPTDKALLEDPEFRRYVELMRMHS 225 (238)
Q Consensus 163 G~~~~~~~~~~g-~~~~tp~~fDN~Yy~~ll-~~~~---------------~gll~l~sD~~L~~d~~t~~~V~~yA~d~ 225 (238)
|++|.....++| +|+.||.+|||+||+|++ ++++ +|+++|+||++|+.|++|+.+|++||+||
T Consensus 177 G~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq 256 (328)
T cd00692 177 AAQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQ 256 (328)
T ss_pred cccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCH
Confidence 999975544444 789999999999999987 4442 25677999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 026449 226 LEIMQHHIRNFQ 237 (238)
Q Consensus 226 ~~F~~~Fa~A~~ 237 (238)
++|+++|+.||+
T Consensus 257 ~~f~~~Fa~Am~ 268 (328)
T cd00692 257 AKMNAAFAAAML 268 (328)
T ss_pred HHHHHHHHHHHH
Confidence 999999999996
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=9.6e-61 Score=439.89 Aligned_cols=231 Identities=36% Similarity=0.566 Sum_probs=210.2
Q ss_pred ChhHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhcCCCCCc
Q 026449 7 DTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (238)
Q Consensus 7 ~~~~~~~~-----~~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~d-gSi~~~~E~~~~~N~g 71 (238)
|++|..++ ++++++|++++.+. +++|.+|||+||+++|||.+++.||++ |+|+|.+|++++.|.|
T Consensus 32 ~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~g 111 (409)
T cd00649 32 DFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVN 111 (409)
T ss_pred CCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhh
Confidence 46777764 77899999998764 799999999999999999999999998 6999999999999999
Q ss_pred hHHHHHHHHHHHhhCC-cCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCC--------------------------
Q 026449 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------------- 124 (238)
Q Consensus 72 l~~~~~~i~~~k~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~-------------------------- 124 (238)
|.+++.+|++||+++| .||+||+|+||+.+||+.+|||.|+|.+||.|+..+.
T Consensus 112 L~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~p 191 (409)
T cd00649 112 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENP 191 (409)
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccc
Confidence 9999999999999998 7999999999999999999999999999999996432
Q ss_pred ------------CCC--CCCCCCCChHHHHHHHHHCCCCccchhhh-cccccCCCCCCCC--------------------
Q 026449 125 ------------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAHPER-------------------- 169 (238)
Q Consensus 125 ------------~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL-~GaHtiG~~~~~~-------------------- 169 (238)
|++ .||.|..++.+|++.|.+||||.+||||| +||||||++||..
T Consensus 192 l~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLg 271 (409)
T cd00649 192 LAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLG 271 (409)
T ss_pred hhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhc
Confidence 234 69999999999999999999999999999 5999999999952
Q ss_pred ---------------CCCCCCCCCCCCccCcHHHHHHhhcCc--------------------------------CCcccc
Q 026449 170 ---------------SGFDGPWTREPLKFDNSYFVELLNGES--------------------------------EGLLQL 202 (238)
Q Consensus 170 ---------------~~~~g~~~~tp~~fDN~Yy~~ll~~~~--------------------------------~gll~l 202 (238)
++++|+|+.||.+|||+||++|+..+| .+++||
T Consensus 272 w~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL 351 (409)
T cd00649 272 WKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMML 351 (409)
T ss_pred ccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccc
Confidence 257788999999999999999998442 155679
Q ss_pred cccccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 203 PTDKALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 203 ~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
+||++|+.|++|+.+|++||+|++.||++|++||+
T Consensus 352 ~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~ 386 (409)
T cd00649 352 TTDLALRFDPEYEKISRRFLENPDEFADAFAKAWF 386 (409)
T ss_pred hhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-59 Score=413.53 Aligned_cols=222 Identities=43% Similarity=0.647 Sum_probs=201.8
Q ss_pred HHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCC-CCCCCCCCcCChhhhcCCCCCchHHHHHHHHHHHhhCC---cCc
Q 026449 16 KARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNT-KTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHP---KIT 90 (238)
Q Consensus 16 ~~~~~v~~-~~~~~~~a~~~lRl~FHDc~t~d~s~-~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~~~k~~~p---~VS 90 (238)
.++.+|++ +.+++.+++.+|||+||||++++.+. ..|||||||++.+|+++|+|.+|.+++++|++||++++ +||
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 35566655 34588999999999999999999877 78999999999999999999999899999999999985 899
Q ss_pred HHHHHHHhhhhHHhhC--CCCccccCCCCCCCC-----CCCCCCCCCCCCCChHHHHHHHHHCCCCccchhhhc-ccccC
Q 026449 91 YADLYQLAGVVAVEVT--GGPTVDFVPGRKDSK-----ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTL 162 (238)
Q Consensus 91 ~ADiialaa~~av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHti 162 (238)
|||||++|+++||+.+ |||.|+|++||+|++ .+.|.+++|.|..+++++++.|+++||+++|||||+ |||||
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti 161 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTL 161 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeec
Confidence 9999999999999999 999999999999999 455778899999999999999999999999999999 99999
Q ss_pred -CCCCCCCCCCC--CCCCCCCCccCcHHHHHHhhcCcC------------CcccccccccccCChhHHHHHHHHhhChHH
Q 026449 163 -GRAHPERSGFD--GPWTREPLKFDNSYFVELLNGESE------------GLLQLPTDKALLEDPEFRRYVELMRMHSLE 227 (238)
Q Consensus 163 -G~~~~~~~~~~--g~~~~tp~~fDN~Yy~~ll~~~~~------------gll~l~sD~~L~~d~~t~~~V~~yA~d~~~ 227 (238)
|++||..++.. ++|+.||.+|||+||++|+.++|+ ++.+|+||++|+.|++|+.+|++||.|++.
T Consensus 162 ~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~ 241 (255)
T cd00314 162 GGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEK 241 (255)
T ss_pred cCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHH
Confidence 99999766543 578899999999999999998863 223489999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 026449 228 IMQHHIRNFQ 237 (238)
Q Consensus 228 F~~~Fa~A~~ 237 (238)
|+++|+.||+
T Consensus 242 f~~~Fa~a~~ 251 (255)
T cd00314 242 FFEDFAKAWI 251 (255)
T ss_pred HHHHHHHHHH
Confidence 9999999996
No 10
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=5.1e-61 Score=418.31 Aligned_cols=197 Identities=45% Similarity=0.689 Sum_probs=171.4
Q ss_pred HHHHHHHH-HhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCC-hhhhcCCCCCchHHHHHHHHHHHhh----CC-cC
Q 026449 17 ARRDLRAL-IAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRN-EEEYSHGSNNGLKIALDFCEEVKAK----HP-KI 89 (238)
Q Consensus 17 ~~~~v~~~-~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~-~~E~~~~~N~gl~~~~~~i~~~k~~----~p-~V 89 (238)
+|++|++. ..+++++|+||||+||||++| |||||||++ ..|+++++|.||++++++|+.||++ || +|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 46778764 458999999999999999944 999999975 7899999999998899999999975 88 89
Q ss_pred cHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHHHCCCCccchhhhcccccCCCCCC
Q 026449 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHP 167 (238)
Q Consensus 90 S~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~~~ 167 (238)
||||||+||+++||+.+|||.|+|++||+|++++++.+ +||.|..++++|++.|+++|||++|||||+||||||++||
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999998754 5999999999999999999999999999999999999999
Q ss_pred CCCC---------CC--------------C-CCCCCCCccCcHHHHHHhhcCcCCcccccccccccCChhHHHHHHHHhh
Q 026449 168 ERSG---------FD--------------G-PWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELMRM 223 (238)
Q Consensus 168 ~~~~---------~~--------------g-~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~V~~yA~ 223 (238)
..+. ++ . +++ ||.+|||+||++|++++ |+ |+||++|++|++|+++|++||+
T Consensus 155 ~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~~--gl--l~SD~~L~~d~~t~~~V~~yA~ 229 (230)
T PF00141_consen 155 SSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNGR--GL--LPSDQALLNDPETRPIVERYAQ 229 (230)
T ss_dssp GCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHTE--EE--EHHHHHHHHSTTHHHHHHHHHH
T ss_pred ccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcCC--Cc--CHHHHHHhcCHHHHHHHHHHhc
Confidence 6211 00 0 234 89999999999999998 87 7999999999999999999998
Q ss_pred C
Q 026449 224 H 224 (238)
Q Consensus 224 d 224 (238)
|
T Consensus 230 d 230 (230)
T PF00141_consen 230 D 230 (230)
T ss_dssp T
T ss_pred C
Confidence 6
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.1e-57 Score=439.96 Aligned_cols=231 Identities=35% Similarity=0.532 Sum_probs=208.3
Q ss_pred ChhHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhcCCCCCc
Q 026449 7 DTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (238)
Q Consensus 7 ~~~~~~~~-----~~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~d-gSi~~~~E~~~~~N~g 71 (238)
|++|..++ +++|++|++++.+. .++|.+|||+||+++||+.+++.||++ |+|||.+|++++.|.+
T Consensus 42 ~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~ 121 (716)
T TIGR00198 42 DFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVN 121 (716)
T ss_pred CccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhh
Confidence 57888876 45899999998764 699999999999999999999999996 6999999999999999
Q ss_pred hHHHHHHHHHHHhhCC-cCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCC--------------------------
Q 026449 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------------- 124 (238)
Q Consensus 72 l~~~~~~i~~~k~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~-------------------------- 124 (238)
|++++.+|++||++|| .|||||||+||+++||+.+|||.|+|.+||+|++.+.
T Consensus 122 Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~ 201 (716)
T TIGR00198 122 LDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPL 201 (716)
T ss_pred HHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccc
Confidence 9999999999999999 8999999999999999999999999999999994321
Q ss_pred -----------CCC--CCCCCCCChHHHHHHHHHCCCCccchhhhc-ccccCCCCCCCC---------------------
Q 026449 125 -----------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPER--------------------- 169 (238)
Q Consensus 125 -----------~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~~~~~--------------------- 169 (238)
+++ .+|.|..++++|++.|.+||||.+|||||+ ||||||++||..
T Consensus 202 a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~ 281 (716)
T TIGR00198 202 AATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGW 281 (716)
T ss_pred hhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcc
Confidence 122 699999999999999999999999999996 999999999941
Q ss_pred --------------CCCCCCCCCCCCccCcHHHHHHhhcCcC------------------------------Cccccccc
Q 026449 170 --------------SGFDGPWTREPLKFDNSYFVELLNGESE------------------------------GLLQLPTD 205 (238)
Q Consensus 170 --------------~~~~g~~~~tp~~fDN~Yy~~ll~~~~~------------------------------gll~l~sD 205 (238)
++++|+|+.||.+|||+||++|+.++|. ...+|+||
T Consensus 282 ~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SD 361 (716)
T TIGR00198 282 HNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDAD 361 (716)
T ss_pred cCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchh
Confidence 3456889999999999999999986320 24558999
Q ss_pred ccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 206 KALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 206 ~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
++|..|++++.+|+.||.|++.|+++|++||.
T Consensus 362 laL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~ 393 (716)
T TIGR00198 362 LALRFDPEFRKISRRFLREPDYFAEAFAKAWF 393 (716)
T ss_pred HHhccCccHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.9e-55 Score=425.55 Aligned_cols=231 Identities=36% Similarity=0.570 Sum_probs=208.9
Q ss_pred ChhHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhcCCCCCc
Q 026449 7 DTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (238)
Q Consensus 7 ~~~~~~~~-----~~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~d-gSi~~~~E~~~~~N~g 71 (238)
+++|..++ +++|++|++++.++ .++|.+|||+||+++|||.+++.||++ |+|||.+|.+++.|.+
T Consensus 44 ~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~g 123 (726)
T PRK15061 44 DFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVN 123 (726)
T ss_pred CCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhh
Confidence 57787765 67899999998765 689999999999999999999999997 6999999999999999
Q ss_pred hHHHHHHHHHHHhhCC-cCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCCC-------------------------
Q 026449 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK------------------------- 125 (238)
Q Consensus 72 l~~~~~~i~~~k~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------- 125 (238)
|+++..+|++||+++| .||+||+|+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 124 L~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~ 203 (726)
T PRK15061 124 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLEN 203 (726)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccccccccccc
Confidence 9999999999999998 89999999999999999999999999999999864321
Q ss_pred --------------C--CCCCCCCCChHHHHHHHHHCCCCccchhhhc-ccccCCCCCCCC-------------------
Q 026449 126 --------------E--GRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPER------------------- 169 (238)
Q Consensus 126 --------------~--~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~~~~~------------------- 169 (238)
+ .-+|.|..++.+|++.|.+||||.+|||||+ ||||||++||..
T Consensus 204 pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgL 283 (726)
T PRK15061 204 PLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGL 283 (726)
T ss_pred chhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhc
Confidence 1 1279999999999999999999999999995 999999999942
Q ss_pred ----------------CCCCCCCCCCCCccCcHHHHHHhhcCcC--------------------------------Cccc
Q 026449 170 ----------------SGFDGPWTREPLKFDNSYFVELLNGESE--------------------------------GLLQ 201 (238)
Q Consensus 170 ----------------~~~~g~~~~tp~~fDN~Yy~~ll~~~~~--------------------------------gll~ 201 (238)
++++|+|+.||.+|||+||++|+.++|. +++|
T Consensus 284 gw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~M 363 (726)
T PRK15061 284 GWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTM 363 (726)
T ss_pred cccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCccc
Confidence 2467889999999999999999987431 3567
Q ss_pred ccccccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 202 LPTDKALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 202 l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
|+||++|..|++++.+|++||+|++.|+++|++||.
T Consensus 364 LtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~ 399 (726)
T PRK15061 364 LTTDLALRFDPEYEKISRRFLENPEEFADAFARAWF 399 (726)
T ss_pred ccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999996
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.5e-54 Score=376.94 Aligned_cols=205 Identities=28% Similarity=0.423 Sum_probs=172.4
Q ss_pred hCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCcCChhhhcCCCCCchH--HHHHHHHHHHhhCCcCcHHHHHHHhhhhHH
Q 026449 26 AYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLK--IALDFCEEVKAKHPKITYADLYQLAGVVAV 103 (238)
Q Consensus 26 ~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgSi~~~~E~~~~~N~gl~--~~~~~i~~~k~~~p~VS~ADiialaa~~av 103 (238)
.++.++++||||+||||+|||...++|||||||++ |...+||.|+. ..+..++.++. ++||||||||||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999998 67788998875 33444555433 48999999999999999
Q ss_pred hhCCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHCCCCccchhhhcc-cccCCCCCCCCC------CCC--C
Q 026449 104 EVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG-GHTLGRAHPERS------GFD--G 174 (238)
Q Consensus 104 ~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G-aHtiG~~~~~~~------~~~--g 174 (238)
+.||||.|+|++||+|++++.+.+ ||.|+.++++|++.|+++||+++|||+|+| |||||++||..+ ++. +
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~ 191 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDT 191 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCC
Confidence 999999999999999999999887 999999999999999999999999999995 999999999875 332 3
Q ss_pred --CCCCCCCccCcHHHHHHhhcCcCCcccc------cccccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 175 --PWTREPLKFDNSYFVELLNGESEGLLQL------PTDKALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 175 --~~~~tp~~fDN~Yy~~ll~~~~~gll~l------~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
+|++||.+|||+||.++++|.++|+|+| .||..++....- ..++..| +++.|.+.=+..|+
T Consensus 192 ~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n-~t~~~l~-~~~~f~~~c~~~~~ 260 (264)
T cd08201 192 VLQFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGN-VTMNELA-SPDTFQKTCADILQ 260 (264)
T ss_pred CCCCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCcc-HHHHHhc-ChHHHHHHHHHHHH
Confidence 8999999999999999999999999875 566655543322 2345666 67878776555443
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=8.8e-51 Score=360.73 Aligned_cols=230 Identities=27% Similarity=0.391 Sum_probs=197.7
Q ss_pred CCccChhHHHH--HHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-cCChhhhcCCCCCc--hHHHHH
Q 026449 3 LPVVDTEYLKE--IDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNG--LKIALD 77 (238)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgS-i~~~~E~~~~~N~g--l~~~~~ 77 (238)
+|++++.++++ |++++++ ++....+++.+|||+||++.||+.+++.||+||+ |+|.+|++++.|.+ |.+++.
T Consensus 3 ~p~~~~~~i~~~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~ 79 (297)
T cd08200 3 IPAVDYELIDDADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLA 79 (297)
T ss_pred CCCCCccccCHHHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHH
Confidence 79999888774 4444433 4455678999999999999999999999999996 99999999999999 999999
Q ss_pred HHHHHHhhCC-------cCcHHHHHHHhhhhHHhhCCC-----CccccCCCCCCCCCCCC--C---CCCCCCC-------
Q 026449 78 FCEEVKAKHP-------KITYADLYQLAGVVAVEVTGG-----PTVDFVPGRKDSKISPK--E---GRLPDAK------- 133 (238)
Q Consensus 78 ~i~~~k~~~p-------~VS~ADiialaa~~av~~~GG-----P~~~v~~GR~D~~~s~~--~---~~lP~p~------- 133 (238)
++++||+++| .||+||+|+||+..|||.+|| |.|+|.+||.|++.+.. + ..+|.+.
T Consensus 80 ~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~ 159 (297)
T cd08200 80 VLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLK 159 (297)
T ss_pred HHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccc
Confidence 9999999997 799999999999999999999 99999999999987542 1 2345332
Q ss_pred -----CChHHHHHHHHHCCCCccchhhhcccc-cCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhc--Cc---------
Q 026449 134 -----RGAPHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNG--ES--------- 196 (238)
Q Consensus 134 -----~~~~~l~~~F~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~--~~--------- 196 (238)
.+.+.|+..|.++|||++|||||+||| ++|++|. ++ +.|+|+.+|.+|||.||++|+.. +|
T Consensus 160 ~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~-~s-~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~ 237 (297)
T cd08200 160 KGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGL 237 (297)
T ss_pred cCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcccceeeecCCCCCc
Confidence 234789999999999999999999997 7999886 44 46999999999999999999953 12
Q ss_pred -------CCcc---cccccccccCChhHHHHHHHHhhC--hHHHHHHHHHhhh
Q 026449 197 -------EGLL---QLPTDKALLEDPEFRRYVELMRMH--SLEIMQHHIRNFQ 237 (238)
Q Consensus 197 -------~gll---~l~sD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~A~~ 237 (238)
.|.+ ++++|..|.+|+++|.+|+.||+| ++.||++|+.||+
T Consensus 238 ~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~ 290 (297)
T cd08200 238 FEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWT 290 (297)
T ss_pred eeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 1222 378999999999999999999999 9999999999996
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4.4e-45 Score=355.14 Aligned_cols=230 Identities=26% Similarity=0.381 Sum_probs=196.9
Q ss_pred CCccChhHHHHHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-cCChhhhcCCCC--CchHHHHHH
Q 026449 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSN--NGLKIALDF 78 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgS-i~~~~E~~~~~N--~gl~~~~~~ 78 (238)
+|++|++++ ++-++.|++ ++.+.-.++.+||++||++.|||.+++.||+||+ ||+.+|++++.| .||.+++.+
T Consensus 422 ~p~~~~~~v---~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~ 498 (716)
T TIGR00198 422 LPPVDYTLS---EGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAV 498 (716)
T ss_pred CCCCCchhH---HHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHH
Confidence 689998876 355556654 5566778999999999999999999999999996 999999999999 899999999
Q ss_pred HHHHHhhCC--cCcHHHHHHHhhhhHHhhC---CCC--ccccCCCCCCCCCCC--CCCCCC-C--------------CCC
Q 026449 79 CEEVKAKHP--KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISP--KEGRLP-D--------------AKR 134 (238)
Q Consensus 79 i~~~k~~~p--~VS~ADiialaa~~av~~~---GGP--~~~v~~GR~D~~~s~--~~~~lP-~--------------p~~ 134 (238)
+++||+++| .||+||+|+||+.+|||.+ ||| .|+|.+||.|++... +++..| . ...
T Consensus 499 Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 499 LEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCC
Confidence 999999999 8999999999999999999 897 589999999998754 222222 1 122
Q ss_pred ChHHHHHHHHHCCCCccchhhhccc-ccCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhcC--c---------------
Q 026449 135 GAPHLRDIFYRMGLSDKDIVALSGG-HTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE--S--------------- 196 (238)
Q Consensus 135 ~~~~l~~~F~~~Gl~~~e~VaL~Ga-HtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~--------------- 196 (238)
..+.|++.|.++|||++|||||+|| |++|++|... +.|+|+.+|.+|||.||++|+..+ |
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s--~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr 656 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS--KHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDR 656 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCCC--CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecC
Confidence 3467899999999999999999999 5999999843 469999999999999999999732 2
Q ss_pred -CCcccc---cccccccCChhHHHHHHHHhhCh--HHHHHHHHHhhh
Q 026449 197 -EGLLQL---PTDKALLEDPEFRRYVELMRMHS--LEIMQHHIRNFQ 237 (238)
Q Consensus 197 -~gll~l---~sD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~A~~ 237 (238)
.|.+++ ++|..|.+|+++|.+|+.||+|+ +.||++|++||+
T Consensus 657 ~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~ 703 (716)
T TIGR00198 657 QTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWT 703 (716)
T ss_pred CCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 144444 78999999999999999999997 899999999996
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.5e-44 Score=348.40 Aligned_cols=231 Identities=28% Similarity=0.416 Sum_probs=197.4
Q ss_pred CCccChhHHHHHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-cCChhhhcCCCCC--chHHHHHH
Q 026449 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN--GLKIALDF 78 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgS-i~~~~E~~~~~N~--gl~~~~~~ 78 (238)
+|+++++++++-+. ..||+ ++...-..+.+||++||++.|||.+++.||+||+ ||+.+|++++.|. +|.+++.+
T Consensus 428 ~p~~~~~~~~~~di--~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~ 505 (726)
T PRK15061 428 VPAVDHELIDDADI--AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAV 505 (726)
T ss_pred CCCCCcccCCHHHH--HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHH
Confidence 79999998775433 35655 4455667999999999999999999999999996 9999999999999 99999999
Q ss_pred HHHHHhhC-------CcCcHHHHHHHhhhhHHhhC---CC--CccccCCCCCCCCCCCCC-----CCCCCCC--------
Q 026449 79 CEEVKAKH-------PKITYADLYQLAGVVAVEVT---GG--PTVDFVPGRKDSKISPKE-----GRLPDAK-------- 133 (238)
Q Consensus 79 i~~~k~~~-------p~VS~ADiialaa~~av~~~---GG--P~~~v~~GR~D~~~s~~~-----~~lP~p~-------- 133 (238)
|++||+++ |.||+||+|+||+..|||.+ || |.|+|.+||.|++..... ..+|...
T Consensus 506 LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~ 585 (726)
T PRK15061 506 LEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKK 585 (726)
T ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccc
Confidence 99999997 68999999999999999999 58 999999999999875422 2456432
Q ss_pred ----CChHHHHHHHHHCCCCccchhhhcccc-cCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhc--Cc----------
Q 026449 134 ----RGAPHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGFDGPWTREPLKFDNSYFVELLNG--ES---------- 196 (238)
Q Consensus 134 ----~~~~~l~~~F~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~--~~---------- 196 (238)
...+.|++.|.++|||+.|||||+||| ++|.+|.. + +.|+|+.+|.+|||.||++|+.. +|
T Consensus 586 ~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~-S-~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~y 663 (726)
T PRK15061 586 GYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGG-S-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVY 663 (726)
T ss_pred cCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCC-C-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCCce
Confidence 234789999999999999999999996 78988854 4 46999999999999999999952 11
Q ss_pred ------CCccc---ccccccccCChhHHHHHHHHhhC--hHHHHHHHHHhhh
Q 026449 197 ------EGLLQ---LPTDKALLEDPEFRRYVELMRMH--SLEIMQHHIRNFQ 237 (238)
Q Consensus 197 ------~gll~---l~sD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~A~~ 237 (238)
.|.++ +++|..|.+|+++|.+|+.||+| ++.||++|+.||.
T Consensus 664 e~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~ 715 (726)
T PRK15061 664 EGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWT 715 (726)
T ss_pred eeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 13222 47899999999999999999999 9999999999996
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=302.90 Aligned_cols=233 Identities=36% Similarity=0.553 Sum_probs=207.1
Q ss_pred ccChhHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCcCChhhhcCCCC
Q 026449 5 VVDTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSN 69 (238)
Q Consensus 5 ~~~~~~~~~~-----~~~~~~v~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~d-gSi~~~~E~~~~~N 69 (238)
-.+++|..++ ++++++|++++.+. ...|-+|||+||-++||+..++.||.. |..||.++.++|.|
T Consensus 55 g~~fdYaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN 134 (730)
T COG0376 55 GEDFDYAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDN 134 (730)
T ss_pred ccchHHHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcc
Confidence 3568888875 56799999988764 468999999999999999999999986 58999999999999
Q ss_pred CchHHHHHHHHHHHhhCC-cCcHHHHHHHhhhhHHhhCCCCccccCCCCCCCCCCCC-----------------------
Q 026449 70 NGLKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK----------------------- 125 (238)
Q Consensus 70 ~gl~~~~~~i~~~k~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~----------------------- 125 (238)
.+|++++.+|.+||++|+ .||+||+|.|++.+|++.+|++.+.+..||.|-..+..
T Consensus 135 ~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le 214 (730)
T COG0376 135 ANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLE 214 (730)
T ss_pred cchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCcccccccccccccccccc
Confidence 999999999999999999 99999999999999999999999999999999765532
Q ss_pred ---------------C--CCCCCCCCChHHHHHHHHHCCCCccchhhhcc-cccCCCCCCCC------------------
Q 026449 126 ---------------E--GRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG-GHTLGRAHPER------------------ 169 (238)
Q Consensus 126 ---------------~--~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G-aHtiG~~~~~~------------------ 169 (238)
+ +..|+|-.+..+++..|+||+++.+|.|||++ |||+|++|...
T Consensus 215 ~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qG 294 (730)
T COG0376 215 NPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQG 294 (730)
T ss_pred CchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhc
Confidence 1 34788889999999999999999999999985 89999999742
Q ss_pred -----------------CCCCCCCCCCCCccCcHHHHHHhhcCc-------------------------------CCccc
Q 026449 170 -----------------SGFDGPWTREPLKFDNSYFVELLNGES-------------------------------EGLLQ 201 (238)
Q Consensus 170 -----------------~~~~g~~~~tp~~fDN~Yy~~ll~~~~-------------------------------~gll~ 201 (238)
+|..++|+.||++|||+||.+|+..+| ..++|
T Consensus 295 lGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~M 374 (730)
T COG0376 295 LGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMM 374 (730)
T ss_pred cccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCcee
Confidence 123568999999999999999997653 14578
Q ss_pred ccccccccCChhHHHHHHHHhhChHHHHHHHHHhhh
Q 026449 202 LPTDKALLEDPEFRRYVELMRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 202 l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~ 237 (238)
|++|.+|.-||+++.|.++|..|++.|.+.|++||-
T Consensus 375 lttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWf 410 (730)
T COG0376 375 LTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWF 410 (730)
T ss_pred eccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999983
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.3e-21 Score=179.05 Aligned_cols=230 Identities=27% Similarity=0.392 Sum_probs=181.3
Q ss_pred CCccChhHHHHHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCC-CcCChhhhcCCCCC--chHHHHHH
Q 026449 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNG-SIRNEEEYSHGSNN--GLKIALDF 78 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dg-Si~~~~E~~~~~N~--gl~~~~~~ 78 (238)
+|+||++..+ ..+..|++ ++...-....++-.+|-.+.||..|++.||+|| .|++.+.++++.|. .|.+.+.+
T Consensus 439 iP~vd~~l~d---~di~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~ 515 (730)
T COG0376 439 LPAVDYELVD---ADIAALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAV 515 (730)
T ss_pred CCccccccch---HHHHHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHH
Confidence 7999998887 44556665 556667789999999999999999999999998 89999999999996 57789999
Q ss_pred HHHHHhhCC-cCcHHHHHHHhhhhHHhhC---CCC--ccccCCCCCCCCCCCCC------------C--C---CCCCCCC
Q 026449 79 CEEVKAKHP-KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISPKE------------G--R---LPDAKRG 135 (238)
Q Consensus 79 i~~~k~~~p-~VS~ADiialaa~~av~~~---GGP--~~~v~~GR~D~~~s~~~------------~--~---lP~p~~~ 135 (238)
++.|.+.+. .||.||+|+|++..+|+.+ +|- .+||..||.|++..... + | -+....+
T Consensus 516 le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~p 595 (730)
T COG0376 516 LEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTP 595 (730)
T ss_pred HHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCH
Confidence 999999887 7999999999999999876 564 46778899998754311 0 0 0111122
Q ss_pred hHHHHHHHHHCCCCccchhhhccc-ccCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhhcC--c------C---------
Q 026449 136 APHLRDIFYRMGLSDKDIVALSGG-HTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGE--S------E--------- 197 (238)
Q Consensus 136 ~~~l~~~F~~~Gl~~~e~VaL~Ga-HtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~------~--------- 197 (238)
-+-|+++-+-.+|+..||++|+|| ..+|.-+... -.|.++..|.++.|.||.||+.-. | +
T Consensus 596 e~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~s--~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~Drk 673 (730)
T COG0376 596 EELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGGS--KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRK 673 (730)
T ss_pred HHHHHHHHHHhccCCccceEEEcceEeeccCCCCC--ccceeccCcccccchhhhhhhhccceeeeccccccceeccccc
Confidence 345677888899999999999998 6666554321 246788999999999999999632 1 1
Q ss_pred -Cccc---ccccccccCChhHHHHHHHHhhC--hHHHHHHHHHhhh
Q 026449 198 -GLLQ---LPTDKALLEDPEFRRYVELMRMH--SLEIMQHHIRNFQ 237 (238)
Q Consensus 198 -gll~---l~sD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~A~~ 237 (238)
|.+. ...|..+-++++.|.+.+-||+| ++.|.++|++||.
T Consensus 674 tG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~ 719 (730)
T COG0376 674 TGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWT 719 (730)
T ss_pred cCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2211 25788888999999999999986 7889999999996
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=42.41 E-value=43 Score=31.05 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=37.2
Q ss_pred hCCCCccccCCCCCCCCCCCCC---CCCCCCC---CChHHHHHHHHHCCCC----------ccchhhhcccccC
Q 026449 105 VTGGPTVDFVPGRKDSKISPKE---GRLPDAK---RGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (238)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~s~~~---~~lP~p~---~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 162 (238)
.+|-..|..++||.+.+.-.+. ...+... ..+.++...|++.|+. .+|+..|.|+|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 3477889999999976533221 1112122 2356777788888875 4677778888854
No 20
>PRK12346 transaldolase A; Provisional
Probab=36.38 E-value=29 Score=31.95 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhCCcCcHHHHHHHhhhhH--HhhCCCCccccCCCCCCCCCCCC--CCCC-CCC---CCChHHHHHHHHH
Q 026449 74 IALDFCEEVKAKHPKITYADLYQLAGVVA--VEVTGGPTVDFVPGRKDSKISPK--EGRL-PDA---KRGAPHLRDIFYR 145 (238)
Q Consensus 74 ~~~~~i~~~k~~~p~VS~ADiialaa~~a--v~~~GGP~~~v~~GR~D~~~s~~--~~~l-P~p---~~~~~~l~~~F~~ 145 (238)
.|+..++.++++ .|+|-=.+.+....| ...+|-..|..+.||.|.+.-.. ...+ |.. -..+.++.+.|++
T Consensus 137 eGi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~ 214 (316)
T PRK12346 137 EGIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQ 214 (316)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 355555555543 233332233333333 33458889999999998753221 1111 111 2346677788888
Q ss_pred CCCC----------ccchhhhcccccC
Q 026449 146 MGLS----------DKDIVALSGGHTL 162 (238)
Q Consensus 146 ~Gl~----------~~e~VaL~GaHti 162 (238)
.|+. .+|+.+|.|+|.+
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 8864 4577778888754
No 21
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=36.03 E-value=39 Score=28.67 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.1
Q ss_pred hHHHHHHHHHCCCCccchhhhccccc
Q 026449 136 APHLRDIFYRMGLSDKDIVALSGGHT 161 (238)
Q Consensus 136 ~~~l~~~F~~~Gl~~~e~VaL~GaHt 161 (238)
..+|...|+++|+++.|-+.++.-|.
T Consensus 107 a~~la~wF~~~Gi~IHd~ti~Ip~~v 132 (188)
T PF09533_consen 107 AEELAEWFERRGIDIHDYTIPIPRDV 132 (188)
T ss_pred cHHHHHHHHHcCCChhheeEecCHHH
Confidence 35789999999999999999887654
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=34.37 E-value=40 Score=31.90 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhCCcCcHHHHHHHhhhhHH--hhCCCCccccCCCCCCCCCCCCCC--CCCCCCC----ChHHHHHHHHH
Q 026449 74 IALDFCEEVKAKHPKITYADLYQLAGVVAV--EVTGGPTVDFVPGRKDSKISPKEG--RLPDAKR----GAPHLRDIFYR 145 (238)
Q Consensus 74 ~~~~~i~~~k~~~p~VS~ADiialaa~~av--~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~----~~~~l~~~F~~ 145 (238)
.|+..+..++++ .|.|-=.+.+....|+ ..+|-..|..+.||.|.+.-...+ .+|...+ .+.++.+.|++
T Consensus 142 eGi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~ 219 (391)
T PRK12309 142 EGIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKK 219 (391)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHh
Confidence 455666666554 1222222223333222 335778999999999875433222 1343322 36677778888
Q ss_pred CCCC----------ccchhhhcccccC
Q 026449 146 MGLS----------DKDIVALSGGHTL 162 (238)
Q Consensus 146 ~Gl~----------~~e~VaL~GaHti 162 (238)
.|+. ..++..|.|+|.+
T Consensus 220 ~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 220 FGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCcEEEecccCCHHHHHHHHCCCee
Confidence 8864 4566677888754
No 23
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=31.18 E-value=59 Score=29.88 Aligned_cols=86 Identities=14% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhCCcCcHHHHHHHhhhhHH--hhCCCCccccCCCCCCCCCCCCCC--CCCC----CCCChHHHHHHHHH
Q 026449 74 IALDFCEEVKAKHPKITYADLYQLAGVVAV--EVTGGPTVDFVPGRKDSKISPKEG--RLPD----AKRGAPHLRDIFYR 145 (238)
Q Consensus 74 ~~~~~i~~~k~~~p~VS~ADiialaa~~av--~~~GGP~~~v~~GR~D~~~s~~~~--~lP~----p~~~~~~l~~~F~~ 145 (238)
.|+..++.++++ .|+|-=.+.+....|+ ..+|-..+..+.||.|-+.-...+ ..+. +-..+.++.+.|++
T Consensus 136 eGi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~ 213 (313)
T cd00957 136 EGIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKK 213 (313)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHH
Confidence 356666666554 2222222233333222 334778899999999865322111 1111 12346677788888
Q ss_pred CCCCc----------cchhhhccccc
Q 026449 146 MGLSD----------KDIVALSGGHT 161 (238)
Q Consensus 146 ~Gl~~----------~e~VaL~GaHt 161 (238)
.|+.. .|+..|.|+|.
T Consensus 214 ~~~~T~vmaASfRn~~~v~~laG~d~ 239 (313)
T cd00957 214 FGYKTKVMGASFRNIGQILALAGCDY 239 (313)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCe
Confidence 89764 45555666663
No 24
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=30.23 E-value=34 Score=27.07 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=28.5
Q ss_pred HCCCC--ccchhhhcccccCCCCCCCCCCCCCCCCCCCCccCcHHHHHHhh
Q 026449 145 RMGLS--DKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLN 193 (238)
Q Consensus 145 ~~Gl~--~~e~VaL~GaHtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~ 193 (238)
+++++ -.+++.|||.| |..+..+.--.+.....|..-++.||.+=+.
T Consensus 22 ar~~s~~~~~I~IlSGtH--G~~~G~nw~~~~~~~R~p~l~e~~f~~eD~~ 70 (119)
T PF15656_consen 22 ARRPSGDNGDIHILSGTH--GYCSGQNWLSESNRLRRPGLKEKAFYKEDLR 70 (119)
T ss_pred HhCcCCCCCCEEEEeCCC--CCccccchhhccccccCchhhhhhHHHHHHH
Confidence 45666 78999999998 3332211100011134688889999976654
No 25
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=29.13 E-value=54 Score=24.80 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=26.0
Q ss_pred cccCChhHHHHHHH--HhhChHHHHHHHHHhhh
Q 026449 207 ALLEDPEFRRYVEL--MRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 207 ~L~~d~~t~~~V~~--yA~d~~~F~~~Fa~A~~ 237 (238)
..++|.+||+.|+. -|.|.++..+.|-.||.
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T 67 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc
Confidence 45689999999964 57899999999998874
No 26
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=28.81 E-value=56 Score=24.59 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=25.9
Q ss_pred cccCChhHHHHHHH--HhhChHHHHHHHHHhhh
Q 026449 207 ALLEDPEFRRYVEL--MRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 207 ~L~~d~~t~~~V~~--yA~d~~~F~~~Fa~A~~ 237 (238)
..++|.+||+.|+. -|.|.++..+.|-.||.
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfT 66 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 34678999999964 57899999999998874
No 27
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=28.77 E-value=72 Score=29.38 Aligned_cols=116 Identities=14% Similarity=0.189 Sum_probs=62.8
Q ss_pred hhCCCCccccCCCCCCCCCCCCCC--CCC----CCCCChHHHHHHHHHCCCC----------ccchhhhcccccCCCC--
Q 026449 104 EVTGGPTVDFVPGRKDSKISPKEG--RLP----DAKRGAPHLRDIFYRMGLS----------DKDIVALSGGHTLGRA-- 165 (238)
Q Consensus 104 ~~~GGP~~~v~~GR~D~~~s~~~~--~lP----~p~~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHtiG~~-- 165 (238)
..+|-..|..+.||.+-+.-...+ ..| ++-..+.++.+.|++.|+. .+|+.+|.|+|.+=..
T Consensus 166 a~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~Ti~p~ 245 (317)
T TIGR00874 166 AEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRLTISPA 245 (317)
T ss_pred HHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeEeCCHH
Confidence 345888999999999774222111 111 1223466778888888875 4566667787744111
Q ss_pred ------CCCC-----CCCCCC--CCCCCCccCcHHHHHHhhcCcCCcccccccccccCChhHHHHHHHHhhChHHHHHH
Q 026449 166 ------HPER-----SGFDGP--WTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELMRMHSLEIMQH 231 (238)
Q Consensus 166 ------~~~~-----~~~~g~--~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~ 231 (238)
.+.. +....+ ....|..+|...|+-.++.. +. .+ .++.+-++.|+.|+.....-
T Consensus 246 ll~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~fr~~~~~d--~m---a~-------ekl~~gir~F~~d~~~Le~~ 312 (317)
T TIGR00874 246 LLDELKESTGPVERKLDPESAKKVDKQPIILDESEFRFLHNED--AM---AT-------EKLAEGIRKFAADQEKLEKL 312 (317)
T ss_pred HHHHHHhCCCCcCccCCccccccccccCCCCCHHHHHHHhCCC--cc---hH-------HHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 01234567888887544443 22 12 23466678888887765443
No 28
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=28.39 E-value=38 Score=22.86 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=22.5
Q ss_pred HHHHhhh---hHHhhCCCCccccCCCCCCCCCCC
Q 026449 94 LYQLAGV---VAVEVTGGPTVDFVPGRKDSKISP 124 (238)
Q Consensus 94 iialaa~---~av~~~GGP~~~v~~GR~D~~~s~ 124 (238)
+++||+. |-...|.||.+++-.||.-.+-|.
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 4555554 456678999999999998765444
No 29
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=27.54 E-value=25 Score=24.94 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=4.5
Q ss_pred CCCCccCcHHHH
Q 026449 178 REPLKFDNSYFV 189 (238)
Q Consensus 178 ~tp~~fDN~Yy~ 189 (238)
..|..|||.|+.
T Consensus 31 g~~~~idn~yl~ 42 (66)
T PF09027_consen 31 GSPSEIDNNYLN 42 (66)
T ss_dssp -SS----TTT--
T ss_pred CChhhhhhhhhc
Confidence 478899999996
No 30
>PRK05269 transaldolase B; Provisional
Probab=27.27 E-value=44 Score=30.75 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=61.1
Q ss_pred hCCCCccccCCCCCCCCCCCCC---CCCC---CCCCChHHHHHHHHHCCCCc----------cchhhhcccccCCCC---
Q 026449 105 VTGGPTVDFVPGRKDSKISPKE---GRLP---DAKRGAPHLRDIFYRMGLSD----------KDIVALSGGHTLGRA--- 165 (238)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~s~~~---~~lP---~p~~~~~~l~~~F~~~Gl~~----------~e~VaL~GaHtiG~~--- 165 (238)
.+|-..+..+.||.|.+.-... ..-+ ++-..+.++.+.|++.|+.. .++..|.|+|++=..
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~vTi~p~l 248 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRLTISPAL 248 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeEECCHHH
Confidence 3477889999999986522110 1111 12234677788898888764 455667787755111
Q ss_pred -------CCC---CCCCCCCCCCCCCccCcHHHHHHhhcCcCCcccccccccccCChhHHHHHHHHhhChHHHHHHH
Q 026449 166 -------HPE---RSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELMRMHSLEIMQHH 232 (238)
Q Consensus 166 -------~~~---~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~V~~yA~d~~~F~~~F 232 (238)
+.. .+....+-...+..+|-..|+..++.. ++ ......+=++.|+.|+....+-.
T Consensus 249 l~~l~~~~~~~~~~l~~~~~~~~~~~~~~e~~f~~~~~~d--~m----------a~ekl~egi~~F~~~~~~L~~~i 313 (318)
T PRK05269 249 LEELAASEGELERKLSPPGEAKARPVPLTEAEFRWQHNED--AM----------ATEKLAEGIRKFAKDQEKLEKLI 313 (318)
T ss_pred HHHHHhcCCCccccCCCccccccccccCCHHHHHHHhCcc--cc----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000011224455666665444332 11 12345666888888877655444
No 31
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=26.55 E-value=82 Score=25.95 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.1
Q ss_pred cChhHHHHHHHH--HHHHHHHHhCC
Q 026449 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (238)
Q Consensus 6 ~~~~~~~~~~~~--~~~v~~~~~~~ 28 (238)
+|||+.++|+.| +++|++++.|.
T Consensus 24 ~DP~~~~eI~~A~tR~dIR~LI~~G 48 (150)
T PRK08570 24 IDPEALEDVAEAITREDIRELIKEG 48 (150)
T ss_pred eCHHHHHHHHHHhhHHHHHHHHHCC
Confidence 589999999887 89999998874
No 32
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=26.08 E-value=82 Score=25.79 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.0
Q ss_pred cChhHHHHHHHH--HHHHHHHHhCC
Q 026449 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (238)
Q Consensus 6 ~~~~~~~~~~~~--~~~v~~~~~~~ 28 (238)
+||+++++|+.| +++|++++.|.
T Consensus 21 ~DP~~~~eI~~A~tR~dIR~LIkdG 45 (145)
T cd00481 21 IDPNELEEIANANTREDIRKLIKDG 45 (145)
T ss_pred eCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 589999999887 89999998874
No 33
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=25.40 E-value=88 Score=25.70 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=19.8
Q ss_pred cChhHHHHHHHH--HHHHHHHHhCC
Q 026449 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (238)
Q Consensus 6 ~~~~~~~~~~~~--~~~v~~~~~~~ 28 (238)
+|||+.+.|+.| +++|++++.+.
T Consensus 24 idp~~~eei~~A~TR~dIr~LIk~g 48 (150)
T COG2147 24 IDPNEIEEIASAITREDIRALIKDG 48 (150)
T ss_pred eChHHHHHHHHhhhHHHHHHHHHCC
Confidence 689999999876 89999998765
No 34
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=24.58 E-value=72 Score=29.96 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=29.4
Q ss_pred hhhhHHhhCCCCc--------cccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHCCCCc
Q 026449 98 AGVVAVEVTGGPT--------VDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSD 150 (238)
Q Consensus 98 aa~~av~~~GGP~--------~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~ 150 (238)
.|..+...+||+. +||+.|-......-....--.+..++...+..|...||+.
T Consensus 154 vAE~aa~~~~~~~~~YVIGTEVPvPGGa~~~l~~~~vT~peaa~~Tl~~Hr~aF~~~Gl~~ 214 (426)
T COG4573 154 VAEAAATEHGGTKLVYVIGTEVPVPGGAAEALDELAVTTPEAARNTLRAHRKAFEARGLAE 214 (426)
T ss_pred HHHHHHHhhCCCceeEEecccccCCCcchhhhhhcccCChhHHHHHHHHHHHHHHHccHHH
Confidence 3344455667643 5777774333322221211123345667788999999984
No 35
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=24.34 E-value=93 Score=25.49 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=19.9
Q ss_pred cChhHHHHHHHH--HHHHHHHHhCC
Q 026449 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (238)
Q Consensus 6 ~~~~~~~~~~~~--~~~v~~~~~~~ 28 (238)
+||+++++|+.| +++|++++.|.
T Consensus 21 ~DP~~~~eI~~A~tR~dIR~LI~~G 45 (145)
T cd01418 21 IDPERLEEVAEAITRDDIRALIKEG 45 (145)
T ss_pred eChHHHHHHHHhhhHHHHHHHHHCC
Confidence 589999999887 89999998874
No 36
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=24.32 E-value=82 Score=23.54 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=25.5
Q ss_pred cccCChhHHHHHHH--HhhChHHHHHHHHHhhh
Q 026449 207 ALLEDPEFRRYVEL--MRMHSLEIMQHHIRNFQ 237 (238)
Q Consensus 207 ~L~~d~~t~~~V~~--yA~d~~~F~~~Fa~A~~ 237 (238)
.+++|.+||..|+. -|.|.++..+.|-.||.
T Consensus 35 ~ilt~ertrrq~~nlrhatnsellceaflhaft 67 (105)
T COG3060 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHc
Confidence 45678999999975 47899999999998874
No 37
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=24.25 E-value=45 Score=24.47 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=17.7
Q ss_pred HHHHHHHHHCCCCccchhhhcccc
Q 026449 137 PHLRDIFYRMGLSDKDIVALSGGH 160 (238)
Q Consensus 137 ~~l~~~F~~~Gl~~~e~VaL~GaH 160 (238)
+.|-..|++.||+..||-.|+-+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhcc
Confidence 567889999999999999998654
No 38
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=23.67 E-value=1.9e+02 Score=20.21 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhhC----C-cCcHHHHHHHhhhhHHhhCC
Q 026449 72 LKIALDFCEEVKAKH----P-KITYADLYQLAGVVAVEVTG 107 (238)
Q Consensus 72 l~~~~~~i~~~k~~~----p-~VS~ADiialaa~~av~~~G 107 (238)
+.+.++.++..-... . .+|.||+..+....-+...+
T Consensus 33 ~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 33 VPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 334566666554442 3 79999999888877665543
No 39
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=22.04 E-value=1.1e+02 Score=25.92 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=19.9
Q ss_pred cChhHHHHHHHH--HHHHHHHHhCC
Q 026449 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (238)
Q Consensus 6 ~~~~~~~~~~~~--~~~v~~~~~~~ 28 (238)
+||+++++|..| +++|++++.|.
T Consensus 22 iDP~~~~eI~~A~tR~dIR~LIkdG 46 (175)
T PTZ00097 22 LDPNEASEISLANSRFSIRKLIKDG 46 (175)
T ss_pred eCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 589999999887 89999998874
No 40
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.94 E-value=1.1e+02 Score=25.62 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=19.8
Q ss_pred cChhHHHHHHHH--HHHHHHHHhCC
Q 026449 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (238)
Q Consensus 6 ~~~~~~~~~~~~--~~~v~~~~~~~ 28 (238)
+||+++++|..| +++|++++.|.
T Consensus 21 ~DP~~~~eI~~A~tR~dIR~LIkdG 45 (164)
T cd01417 21 LDPNEISEISNANSRQSIRKLIKDG 45 (164)
T ss_pred eCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 589999999887 88999988874
No 41
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=20.13 E-value=63 Score=27.93 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCcCcHHHHHHHhhhhHH--hhCCCCccccCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHCCCCcc
Q 026449 74 IALDFCEEVKAKHPKITYADLYQLAGVVAV--EVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDK 151 (238)
Q Consensus 74 ~~~~~i~~~k~~~p~VS~ADiialaa~~av--~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 151 (238)
.|+..+..++++- |.+--...+....|+ ..+|--.+..+.||.|...- ++..-+.++.+.++..|++.+
T Consensus 89 ~Gl~A~~~L~~~G--i~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-------dg~~~v~~~~~~~~~~~~~tk 159 (213)
T TIGR00875 89 EGLKAVKILKKEG--IKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGG-------DGMKLIEEVKTIFENHAPDTE 159 (213)
T ss_pred HHHHHHHHHHHCC--CceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCC-------CHHHHHHHHHHHHHHcCCCCE
Confidence 4677777777651 111111112222221 22365678999999987532 233446678888888898876
Q ss_pred ch
Q 026449 152 DI 153 (238)
Q Consensus 152 e~ 153 (238)
=|
T Consensus 160 Il 161 (213)
T TIGR00875 160 VI 161 (213)
T ss_pred EE
Confidence 33
Done!