BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026450
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
Containing Protein 7
Length = 153
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 142 AASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRD 201
+S D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+ ++F+ LNRD
Sbjct: 4 GSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRD 63
Query: 202 TWANEAVSQTISTNFIFWQV 221
W+NEAV I +FIFWQV
Sbjct: 64 VWSNEAVKNIIREHFIFWQV 83
>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
E.Coli
Length = 731
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353
>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
Refinement Against Nmr And Saxs Data
Length = 723
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLHG-RSLLFIRNVGHLMTIPVIWDSE 353
>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353
>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353
>pdb|2DZL|A Chain A, Solution Structure Of The Uba Domain In Human Protein
Fam100b
Length = 66
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48
Q M++ F+ +A G A+ A Q LQA W+ + A+ F+
Sbjct: 17 HQVMINQFV-LAAGCAADQAKQLLQAAHWQFETALSTFF 54
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 16 SFLEIAVGQTAE-TAVQFLQATSWKLDEAIQLF--YVGNESGAIASASRSPAEEIANPGP 72
+F E+ ++A T + + S LD Q + Y GN GA +S I NPG
Sbjct: 102 TFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGS 161
Query: 73 EE-NSVTAGQEIGDEVRAPLP-----VVRDTLYDDAMFYAGSGARYPLH 115
EE T EIG + P D Y+DA+ YA ++ +H
Sbjct: 162 EEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAV-YAEDSYQFSIH 209
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 16 SFLEIAVGQTAE-TAVQFLQATSWKLDEAIQLF--YVGNESGAIASASRSPAEEIANPGP 72
+F E+ ++A T + + S LD Q + Y GN GA +S I NPG
Sbjct: 102 TFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGS 161
Query: 73 EE-NSVTAGQEIGDEVRAPLP-----VVRDTLYDDAMF 104
EE T EIG + P D Y+DA++
Sbjct: 162 EEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVY 199
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 16 SFLEIAVGQTAE-TAVQFLQATSWKLDEAIQLF--YVGNESGAIASASRSPAEEIANPGP 72
+F E+ ++A T + + S LD Q + Y GN GA +S I NPG
Sbjct: 102 TFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGS 161
Query: 73 EE-NSVTAGQEIGDEVRAPLP-----VVRDTLYDDAMF 104
EE T EIG + P D Y+DA++
Sbjct: 162 EEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVY 199
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 16 SFLEIAVGQTAE-TAVQFLQATSWKLDEAIQLF--YVGNESGAIASASRSPAEEIANPGP 72
+F E+ ++A T + + S LD Q + Y GN GA +S I NPG
Sbjct: 119 TFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGS 178
Query: 73 EE-NSVTAGQEIGDEVRAPLP-----VVRDTLYDDAMF 104
EE T EIG + P D Y+DA++
Sbjct: 179 EEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVY 216
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 16 SFLEIAVGQTAE-TAVQFLQATSWKLDEAIQLF--YVGNESGAIASASRSPAEEIANPGP 72
+F E+ ++A T + + S LD Q + Y GN GA +S I NPG
Sbjct: 119 TFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGS 178
Query: 73 EE-NSVTAGQEIGDEVRAPLP-----VVRDTLYDDAMF 104
EE T EIG + P D Y+DA++
Sbjct: 179 EEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVY 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,812,003
Number of Sequences: 62578
Number of extensions: 270117
Number of successful extensions: 597
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 16
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)