BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026450
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2
Length = 489
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 18/211 (8%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP 70
+ ++ F I G + L+A + L+ A+ +F G G IA + + ++
Sbjct: 14 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDG---GGIAEEPSTSSASVSTV 69
Query: 71 GPEENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEM 130
P +EVRAP+P ++ L + + R P S FR+F E
Sbjct: 70 RPHTE---------EEVRAPIPQKQEILVEPEPLFGAPKRRRPAR--SIFDGFRDFQTET 118
Query: 131 KRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQST 190
R E E D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+
Sbjct: 119 IR---QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNV 175
Query: 191 KEFSSHMLNRDTWANEAVSQTISTNFIFWQV 221
++F+ LNRD W+NEAV I +FIFWQV
Sbjct: 176 QDFACQCLNRDVWSNEAVKNIIREHFIFWQV 206
>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2
Length = 489
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 18/211 (8%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP 70
+ ++ F I G + L+A + L+ A+ +F G G IA + + ++
Sbjct: 14 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDG---GGIAEEPSTSSASVSTV 69
Query: 71 GPEENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEM 130
P +EVRAP+P ++ L + + R P S FR+F E
Sbjct: 70 RPHTE---------EEVRAPIPQKQEILVEPEPLFGAPKRRRPAR--SIFDGFRDFQTET 118
Query: 131 KRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQST 190
R E E D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+
Sbjct: 119 IR---QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNV 175
Query: 191 KEFSSHMLNRDTWANEAVSQTISTNFIFWQV 221
++F+ LNRD W+NEAV I +FIFWQV
Sbjct: 176 QDFACQCLNRDVWSNEAVKNIIREHFIFWQV 206
>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2
Length = 467
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 40/211 (18%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP 70
+ ++ F I G + L+A + L+ A+ +F G G IA + + ++
Sbjct: 14 KGLIQQFTAI-TGASESVGKHMLEACNNNLEMAVTMFLDG---GGIAEEPSTSSASVSTV 69
Query: 71 GPEENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEM 130
P +EVRAP+P ++ L EP L R ++E+
Sbjct: 70 RPHTE---------EEVRAPIPQKQEILV----------------EPEPLFGVRQ-EQEL 103
Query: 131 KRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQST 190
+ G D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+
Sbjct: 104 RNGGA----------IDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNV 153
Query: 191 KEFSSHMLNRDTWANEAVSQTISTNFIFWQV 221
++F+ LNRD W+NEAV I +FIFWQV
Sbjct: 154 QDFACQCLNRDVWSNEAVKNIIREHFIFWQV 184
>sp|Q55BU7|UBXN7_DICDI UBX domain-containing protein 7 homolog OS=Dictyostelium discoideum
GN=ubxd7 PE=4 SV=1
Length = 503
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANPGP 72
++S+FL I + A L+ +W ++ ++ F+ N+ + + S
Sbjct: 6 ILSNFLSITGCDDSSLATTILENNNWDVERSVDFFFTMNDPSNVKPTTSSKKTSSPPTAS 65
Query: 73 EENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKR 132
++ + DE R P+P D L D +Y + Y + + AFR+F++E
Sbjct: 66 SSSASSEFDYNEDEFRDPIPQKMDKLVD--HYYQPTQRSYQ-KQTNVFEAFRDFEKER-- 120
Query: 133 PGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE 192
G+ + + A + +L+ L++PP ++ G+F++ K A + ++LVN+Q +E
Sbjct: 121 -GINQDK------ATEKQKSLSELFKPPLDILTFGTFDEIKKMAEQKKYFVLVNIQDVQE 173
Query: 193 FSSHMLNRDTWANEAVSQTISTNFIFWQVG 222
F LNRDTW+N+ + + I NF+FWQV
Sbjct: 174 FDCQKLNRDTWSNKDLKELIGENFVFWQVN 203
>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1
Length = 427
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 33/242 (13%)
Query: 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIA 68
D+ S+V++F I T E A ++L L AI LF+ ESG + S E +
Sbjct: 4 DEASLVANFCAI-TNSTPEKAQEYLSVADGDLSTAITLFF---ESGGVTDVQSSYIEAPS 59
Query: 69 NPGPEENSVTAGQEIGDEVRAPLPVVRDTLYDD-AMFYAGSG--------ARYPLHEPSS 119
P E E+RAP+ R+ L D A AG+ +P
Sbjct: 60 QTEPVE-----------EIRAPIAPTREVLVDPLADMSAGTSIMGNNFGFGGFPRMNRRQ 108
Query: 120 LIAFRNFDE---EMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAA 176
FD+ ++ P + S + S LA L+RPP+ ++ N S ++A+ A
Sbjct: 109 RRRMGIFDQSPSQIPFPSSNTEDSSEESDSSSRASRLAKLFRPPYDIISNLSLDEARIEA 168
Query: 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQV------GMTFKVFID 230
S Q +W+LVNLQ++ F +LNRD W +E+V + I +F+F Q+ GM FK F
Sbjct: 169 SSQKRWILVNLQTSTSFECQVLNRDLWKDESVKEVIRAHFLFLQLLDDEEPGMEFKRFYP 228
Query: 231 FR 232
R
Sbjct: 229 VR 230
>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1
Length = 500
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 101/274 (36%), Gaps = 65/274 (23%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP 70
+ V F+ I A A QF++ L+ AI LF+ N A+ S++ +P + P
Sbjct: 3 EGKVDEFMAITGADDAAIATQFIEMADGNLNTAISLFF-ENGGAALLSSNNTPTPSNSTP 61
Query: 71 -GPEENSVTAGQEIGDE---------------VRAPLPVVRDTLYDDAMF---YAGSGAR 111
P A ++ + VR P + L + + F Y G G R
Sbjct: 62 MAPTSVDSDADAQLAERLQREAYQQQQPDQDYVRPPDEARHEVLTETSGFPISYGGIGGR 121
Query: 112 Y-PLHE---------PSSLIAFRNFD--------------------------EEMKRPGV 135
+ PLH P S+ R D E ++ P +
Sbjct: 122 FEPLHRVNDMFDEGRPESIFNQRLDDTNTNTYINDNSSDSLDSEEENDDDEYEYVEEPVI 181
Query: 136 WESEQG---------AASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVN 186
E G S LA L+RPPF +M + AK A + KW+++N
Sbjct: 182 ELDEDGNIKEYTKLVRKPKTISKEQKLALLFRPPFSIMSKLDLDAAKQKARAKQKWIMIN 241
Query: 187 LQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQ 220
+Q + F LNRD W++ V I NF+F Q
Sbjct: 242 IQDSGIFQCQALNRDLWSSRPVKTIIKENFVFLQ 275
>sp|C5CAR1|SECA_MICLC Protein translocase subunit SecA OS=Micrococcus luteus (strain ATCC
4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 /
NCTC 2665 / VKM Ac-2230) GN=secA PE=3 SV=1
Length = 911
Score = 35.0 bits (79), Expect = 0.40, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDE 42
S+L D Q V F+E AVG + A + QAT W LD+
Sbjct: 662 SILEGEDLQDRVRRFVEDAVGNIVDAATEEGQATDWDLDQ 701
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 183 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNF---IFWQV 221
+LV L+S + ++ H++N DTW N + + I T+ FW++
Sbjct: 15 MLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM 56
>sp|Q5XGE4|UBAD2_XENTR UBA-like domain-containing protein 2 OS=Xenopus tropicalis
GN=ubald2 PE=2 SV=1
Length = 166
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48
Q M++ F+ +A G A+ A Q LQA W+ + A+ F+
Sbjct: 11 QVMINQFV-LAAGCAADQAKQLLQAAHWQFETALSAFF 47
>sp|Q09214|YP65_CAEEL Uncharacterized protein B0495.5 OS=Caenorhabditis elegans
GN=B0495.5 PE=4 SV=2
Length = 729
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMTFKV 227
+F+KAKD +K + +++ + H++ ++++ NEA ++ ++ NF+ +V +
Sbjct: 46 AFQKAKD----NNKPIFLSVGYSTCHWCHVMEKESFENEATAKILNDNFVAIKVDREERP 101
Query: 228 FIDFRYCCFLI 238
+D Y F++
Sbjct: 102 DVDKLYMAFVV 112
>sp|Q6DD24|UBD2B_XENLA UBA-like domain-containing protein 2-B OS=Xenopus laevis
GN=ubald2-b PE=2 SV=1
Length = 165
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48
Q M++ F+ +A G A+ A Q LQA W+ + A+ F+
Sbjct: 11 QVMINQFV-LAAGCAADQAKQLLQAAHWQFETALSAFF 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,306,196
Number of Sequences: 539616
Number of extensions: 3390783
Number of successful extensions: 8126
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8111
Number of HSP's gapped (non-prelim): 24
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)