Query 026450
Match_columns 238
No_of_seqs 189 out of 430
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dlx_A UBX domain-containing p 99.8 1.8E-20 6.2E-25 154.3 7.1 92 144-235 6-100 (153)
2 2ec4_A FAS-associated factor 1 99.6 6.4E-16 2.2E-20 130.1 5.1 75 151-225 22-100 (178)
3 1v92_A NSFL1 cofactor P47; 3-h 99.4 3.5E-13 1.2E-17 89.3 4.6 43 9-52 4-46 (46)
4 2dal_A Protein KIAA0794; FAS a 99.3 2.4E-12 8.1E-17 91.1 5.4 45 8-53 13-57 (62)
5 3e21_A HFAF1, FAS-associated f 99.3 1.7E-12 5.8E-17 86.4 2.3 41 8-49 3-44 (45)
6 2dam_A ETEA protein; KIAA0887, 99.2 9.5E-12 3.3E-16 89.4 5.2 45 7-52 15-60 (67)
7 2dzl_A Protein FAM100B; UBA-li 99.2 2.2E-11 7.6E-16 87.2 5.3 42 10-52 16-58 (66)
8 3bq3_A Defective in cullin ned 98.5 6.3E-08 2.2E-12 86.5 3.5 44 8-52 13-56 (270)
9 1z96_A DNA-damage, UBA-domain 97.6 7.6E-05 2.6E-09 47.1 4.7 38 9-48 3-40 (40)
10 1wj7_A Hypothetical protein (R 97.5 0.00012 4.1E-09 56.5 5.0 42 9-51 38-79 (104)
11 4gew_A 5'-tyrosyl-DNA phosphod 97.4 7.2E-05 2.5E-09 68.2 3.4 42 9-51 44-85 (362)
12 1oai_A Nuclear RNA export fact 97.3 0.00023 7.8E-09 49.5 4.2 41 9-50 6-46 (59)
13 2g3q_A Protein YBL047C; endocy 97.1 0.00087 3E-08 43.1 5.0 39 10-50 4-42 (43)
14 2jp7_A MRNA export factor MEX6 97.0 0.00044 1.5E-08 47.8 3.4 41 9-50 5-45 (57)
15 1dv0_A DNA repair protein HHR2 97.0 0.00055 1.9E-08 45.3 3.8 42 9-52 3-44 (47)
16 1vg5_A RSGI RUH-014, rhomboid 97.0 0.0012 4.1E-08 47.8 5.7 42 9-52 28-69 (73)
17 1wji_A Tudor domain containing 96.9 0.0021 7.3E-08 45.0 6.3 42 9-52 8-49 (63)
18 1ify_A HHR23A, UV excision rep 96.8 0.0013 4.6E-08 43.7 4.4 41 8-50 6-46 (49)
19 2knz_A Ubiquilin-4; cytoplasm, 96.8 0.0023 7.8E-08 43.2 5.2 40 11-51 12-51 (53)
20 1veg_A NEDD8 ultimate buster-1 96.7 0.0017 5.6E-08 48.2 4.7 41 10-52 29-69 (83)
21 2dah_A Ubiquilin-3; UBA domain 96.7 0.0019 6.5E-08 44.0 4.6 42 10-52 9-50 (54)
22 2jy5_A Ubiquilin-1; UBA, alter 96.6 0.0029 1E-07 42.6 4.7 40 10-50 12-51 (52)
23 2bwb_A Ubiquitin-like protein 96.6 0.0034 1.2E-07 41.3 4.9 38 11-49 8-45 (46)
24 1wiv_A UBP14, ubiquitin-specif 96.5 0.0045 1.5E-07 44.6 5.4 42 9-52 28-69 (73)
25 1vej_A Riken cDNA 4931431F19; 96.4 0.0061 2.1E-07 44.2 5.8 42 10-52 29-70 (74)
26 1wr1_B Ubiquitin-like protein 96.3 0.0053 1.8E-07 42.4 4.6 39 11-50 18-56 (58)
27 2dkl_A Trinucleotide repeat co 96.2 0.0074 2.5E-07 44.8 5.4 41 10-52 21-61 (85)
28 3f9u_A Putative exported cytoc 96.1 0.004 1.4E-07 49.5 3.9 63 163-225 30-92 (172)
29 2dak_A Ubiquitin carboxyl-term 96.1 0.0047 1.6E-07 43.0 3.7 44 7-52 6-49 (63)
30 2l2d_A OTU domain-containing p 96.0 0.01 3.6E-07 41.8 5.0 42 6-48 13-54 (73)
31 2cwb_A Chimera of immunoglobul 96.0 0.0095 3.3E-07 46.1 5.2 41 11-52 67-107 (108)
32 1wgn_A UBAP1, ubiquitin associ 96.0 0.0069 2.3E-07 42.4 3.9 41 10-52 19-59 (63)
33 2cpw_A CBL-interacting protein 95.7 0.015 5.1E-07 40.7 4.7 41 10-52 19-60 (64)
34 2dna_A Unnamed protein product 95.6 0.026 8.8E-07 40.1 5.8 42 11-53 20-61 (67)
35 2ooa_A E3 ubiquitin-protein li 95.5 0.02 7E-07 38.6 4.7 38 10-49 11-48 (52)
36 1whc_A RSGI RUH-027, UBA/UBX 3 95.5 0.014 4.8E-07 40.8 4.0 41 10-52 9-50 (64)
37 2dai_A Ubadc1, ubiquitin assoc 95.3 0.022 7.6E-07 41.9 4.8 41 10-52 29-69 (83)
38 2ekk_A UBA domain from E3 ubiq 95.2 0.033 1.1E-06 36.3 4.9 39 9-50 8-46 (47)
39 3ira_A Conserved protein; meth 95.1 0.015 5.1E-07 48.0 3.6 59 168-226 27-85 (173)
40 2d9s_A CBL E3 ubiquitin protei 95.0 0.035 1.2E-06 37.6 4.6 39 10-50 9-47 (53)
41 2dag_A Ubiquitin carboxyl-term 94.6 0.037 1.3E-06 39.8 4.3 42 9-52 8-50 (74)
42 1jkg_B TAP; NTF2-like domain, 94.4 0.0068 2.3E-07 53.0 0.0 42 9-51 197-238 (250)
43 2cp9_A EF-TS, EF-TSMT, elongat 94.1 0.047 1.6E-06 38.4 3.7 40 10-50 9-48 (64)
44 1wgl_A TOLL-interacting protei 94.0 0.11 3.6E-06 35.9 5.3 44 10-53 9-52 (59)
45 1otr_A Protein CUE2; protein-p 93.9 0.09 3.1E-06 35.0 4.6 42 10-51 4-45 (49)
46 1vdl_A Ubiquitin carboxyl-term 93.6 0.27 9.1E-06 35.6 7.0 43 10-52 24-66 (80)
47 1vek_A UBP14, ubiquitin-specif 93.3 0.1 3.5E-06 38.4 4.6 41 10-52 29-70 (84)
48 2cp8_A NEXT to BRCA1 gene 1 pr 92.8 0.16 5.6E-06 34.5 4.5 41 11-52 10-50 (54)
49 3ph9_A Anterior gradient prote 92.6 0.076 2.6E-06 42.6 3.3 71 152-224 18-88 (151)
50 2crn_A Ubash3A protein; compac 92.6 0.21 7.3E-06 34.8 5.1 43 9-53 8-51 (64)
51 2lbc_A Ubiquitin carboxyl-term 92.5 0.16 5.3E-06 39.6 4.8 42 9-52 77-118 (126)
52 2ju5_A Thioredoxin disulfide i 91.9 0.11 3.8E-06 40.6 3.4 72 151-225 21-93 (154)
53 2kuc_A Putative disulphide-iso 91.1 0.19 6.4E-06 37.3 3.8 60 165-224 12-71 (130)
54 4ae4_A Ubiquitin-associated pr 90.3 0.28 9.6E-06 38.2 4.2 38 12-51 78-115 (118)
55 2juj_A E3 ubiquitin-protein li 88.7 0.53 1.8E-05 32.0 4.0 41 9-51 6-46 (56)
56 1tr8_A Conserved protein (MTH1 87.1 0.57 2E-05 35.6 3.9 34 11-45 66-99 (102)
57 2dhy_A CUE domain-containing p 86.9 0.92 3.1E-05 32.0 4.6 43 9-51 17-59 (67)
58 2oo9_A E3 ubiquitin-protein li 86.8 1.1 3.7E-05 29.4 4.5 38 10-49 4-41 (46)
59 2lva_A Ubiquitin carboxyl-term 86.6 0.13 4.5E-06 40.6 0.0 42 11-52 19-60 (129)
60 2lst_A Thioredoxin; structural 85.7 0.16 5.5E-06 37.7 0.0 55 170-224 9-63 (130)
61 3fk8_A Disulphide isomerase; A 80.0 1.4 4.7E-05 32.7 3.4 57 166-223 15-71 (133)
62 1oqy_A HHR23A, UV excision rep 74.5 1.5 5.3E-05 40.2 2.6 42 9-52 167-208 (368)
63 4ae4_A Ubiquitin-associated pr 73.9 3.6 0.00012 31.8 4.3 40 9-50 7-46 (118)
64 1aip_C EF-TS, elongation facto 70.6 4.2 0.00014 34.3 4.2 39 11-50 4-42 (196)
65 2fwh_A Thiol:disulfide interch 68.0 5.8 0.0002 29.5 4.2 64 158-224 10-74 (134)
66 1xb2_B EF-TS, elongation facto 65.7 5 0.00017 35.7 3.9 38 11-49 5-42 (291)
67 2di0_A Activating signal coint 62.9 15 0.0005 26.1 5.1 44 8-51 11-54 (71)
68 2qho_B E3 ubiquitin-protein li 61.1 20 0.00067 23.8 5.1 43 9-51 8-50 (53)
69 2cos_A Serine/threonine protei 58.6 13 0.00044 25.1 3.9 39 8-48 7-46 (54)
70 2lbc_A Ubiquitin carboxyl-term 54.4 9.5 0.00032 29.2 3.2 41 10-52 3-44 (126)
71 1p3q_Q VPS9P, vacuolar protein 49.5 6.6 0.00023 26.5 1.4 42 8-49 10-51 (54)
72 1q02_A Sequestosome 1; helical 39.4 18 0.00061 24.2 2.2 35 11-47 11-47 (52)
73 1aua_A Phosphatidylinositol tr 36.4 32 0.0011 29.4 4.1 40 8-47 28-73 (296)
74 3q8g_A CRAL-TRIO domain-contai 35.4 39 0.0013 29.6 4.6 40 9-48 38-83 (320)
75 3ihp_A Ubiquitin carboxyl-term 35.2 32 0.0011 34.6 4.4 41 10-52 720-760 (854)
76 4dbg_B Ring finger protein 31; 34.2 27 0.00092 28.5 3.0 37 10-47 102-138 (162)
77 2j9u_A VPS28, vacuolar protein 33.4 20 0.00069 26.8 2.0 24 22-49 70-93 (96)
78 1xfl_A Thioredoxin H1; AT3G510 32.1 87 0.003 22.5 5.5 61 160-226 18-80 (124)
79 1wmj_A Thioredoxin H-type; str 31.1 68 0.0023 22.7 4.6 61 159-225 15-77 (130)
80 1ti3_A Thioredoxin H, PTTRXH1; 30.8 65 0.0022 22.0 4.4 59 161-225 7-67 (113)
81 2vm1_A Thioredoxin, thioredoxi 30.6 58 0.002 22.6 4.1 60 160-225 8-69 (118)
82 1ep7_A Thioredoxin CH1, H-type 30.5 55 0.0019 22.5 3.9 59 165-226 9-67 (112)
83 2j9w_A VPS28, VPS28-PROV prote 29.7 30 0.001 26.1 2.4 24 22-49 75-98 (102)
84 2vlu_A Thioredoxin, thioredoxi 25.8 67 0.0023 22.6 3.7 61 159-225 13-75 (122)
85 1olm_A SEC14-like protein 2; l 23.9 81 0.0028 28.1 4.7 40 9-48 11-57 (403)
86 3d22_A TRXH4, thioredoxin H-ty 21.5 1.3E+02 0.0044 21.6 4.7 61 160-226 26-88 (139)
87 2dml_A Protein disulfide-isome 20.4 1.3E+02 0.0043 21.3 4.4 66 155-226 11-78 (130)
No 1
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.81 E-value=1.8e-20 Score=154.33 Aligned_cols=92 Identities=45% Similarity=0.816 Sum_probs=83.8
Q ss_pred ccccchhhhhhhhcCCCccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeec
Q 026450 144 STADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGM 223 (238)
Q Consensus 144 ~~~~s~~~~La~LFrPP~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~ 223 (238)
++.+++.++|+.||+||++||+.++|++|+..||+++|||||+|+....+.|+.|+|+||+|+.|+++|++|||+|+++.
T Consensus 6 ~~~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~ 85 (153)
T 2dlx_A 6 SGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYH 85 (153)
T ss_dssp CCCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEES
T ss_pred CCCCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEec
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred chh---hhhhhhcee
Q 026450 224 TFK---VFIDFRYCC 235 (238)
Q Consensus 224 d~~---~~~~~~~c~ 235 (238)
++. .+.+.|.+.
T Consensus 86 ~~~~~~~l~~~y~v~ 100 (153)
T 2dlx_A 86 DSEEGQRYIQFYKLG 100 (153)
T ss_dssp SSHHHHHHHHHHTCC
T ss_pred CCHhHHHHHHHcCCC
Confidence 654 666666553
No 2
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.4e-16 Score=130.15 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=66.2
Q ss_pred hhhhhhcCCCccccccchHHHHHHHH----HhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecch
Q 026450 151 DNLASLYRPPFHLMFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMTF 225 (238)
Q Consensus 151 ~~La~LFrPP~dim~~g~f~~A~~~a----~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d~ 225 (238)
+.+.+.|.++...+|.|+|++|++.| |++.|||||+|+++.++.|+.++|+||+|+.|.++|++|||+|+++-++
T Consensus 22 ~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~ 100 (178)
T 2ec4_A 22 AEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTK 100 (178)
T ss_dssp HHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCS
T ss_pred HHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCC
Confidence 34555565555555999999999999 9999999999999999999999999999999999999999999986553
No 3
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.38 E-value=3.5e-13 Score=89.30 Aligned_cols=43 Identities=26% Similarity=0.585 Sum_probs=40.1
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
+++++|.+|++| ||+++++|++||++++||||.||+.||+.++
T Consensus 4 ~~~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~ 46 (46)
T 1v92_A 4 ERQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDGG 46 (46)
T ss_dssp HHHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 478999999999 8999999999999999999999999998753
No 4
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=91.10 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=41.4
Q ss_pred cchHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 026450 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (238)
Q Consensus 8 ~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~~ 53 (238)
..++++|.+|++| ||+++++|++||++++||||.||++||+.++.
T Consensus 13 ~~~~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 13 SALKGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 3478899999999 89999999999999999999999999997653
No 5
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=86.41 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=36.0
Q ss_pred cchHHHHHhhcccccCCC-HHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 8 NDKQSMVSSFLEIAVGQT-AETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 8 ~~~~~~i~~F~~iTtg~~-~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
.+++++|++|++| ||.+ .++|++||+++||||+.||+.||.
T Consensus 3 ~d~de~ia~F~~i-TG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 3 MDREMILADFQAC-TGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp CCHHHHHHHHHHH-HCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred ccHHHHHHHHHHH-HCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 4689999999999 7766 599999999999999999999985
No 6
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=9.5e-12 Score=89.36 Aligned_cols=45 Identities=16% Similarity=0.396 Sum_probs=41.0
Q ss_pred CcchHHHHHhhcccccC-CCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 7 ANDKQSMVSSFLEIAVG-QTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 7 ~~~~~~~i~~F~~iTtg-~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
+.+++++|.+|++| || +++++|++||++++||||.||+.||+...
T Consensus 15 s~~~~e~i~qF~~I-Tg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 15 TQEQTEKLLQFQDL-TGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp CHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred ChhHHHHHHHHHHH-hCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34588999999999 77 99999999999999999999999999754
No 7
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=87.21 Aligned_cols=42 Identities=29% Similarity=0.612 Sum_probs=39.1
Q ss_pred hH-HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQ-SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~-~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
++ ++|.+|++| ||+++++|++||++++||||.||++||+.++
T Consensus 16 ~~q~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 16 RHQVMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 44 899999999 9999999999999999999999999998764
No 8
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.47 E-value=6.3e-08 Score=86.45 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=40.9
Q ss_pred cchHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 8 ~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
.+++++|.+||+| ||+++.+|++||+.++||||.|++.||+++.
T Consensus 13 ~~~~~~i~qF~~i-Tg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 13 SPEQEAIESFTSL-TKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp CHHHHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 3478899999999 9999999999999999999999999998764
No 9
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.62 E-value=7.6e-05 Score=47.09 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=34.4
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff 48 (238)
+.++.|++++++ |-+++.|++.|..++||++.|++..|
T Consensus 3 ~~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 357799999999 89999999999999999999998764
No 10
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.49 E-value=0.00012 Score=56.51 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=39.0
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
+.++.|...+++ ||.+++.|+..|..|+|||+.||...|+..
T Consensus 38 d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 38 DFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 347899999999 999999999999999999999999999865
No 11
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=97.40 E-value=7.2e-05 Score=68.16 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=38.8
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
..++++.+|.+| |++|+..|..||+..+|+||.||+.||+..
T Consensus 44 ~~~~~~~~f~~~-~~~~~~~~~~~l~~~~w~~~~~~~~~~~~~ 85 (362)
T 4gew_A 44 SDEQKLHEFAII-TATDEAFAQSILQDVDWDLKKALDVFYGSE 85 (362)
T ss_dssp CHHHHHHHHHHH-HTCCHHHHHHHTTSSSSCHHHHHHHHHHCG
T ss_pred chHHHHHHHHHH-hCCcHHHHHHHHhhcCchHHHHHHHHcCCc
Confidence 357799999999 999999999999999999999999999653
No 12
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=97.30 E-value=0.00023 Score=49.51 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=38.5
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
.+.++|..|... ||-+.+-+..+|+.++||++.|+..|-+.
T Consensus 6 ~q~~mv~~~s~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 6 EQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp HHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578899999999 99999999999999999999999999763
No 13
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.09 E-value=0.00087 Score=43.13 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.8
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
.++.|++.+++ |-+++.|++-|..++||++.|++..|++
T Consensus 4 ~e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 56899999999 8999999999999999999999988764
No 14
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=97.04 E-value=0.00044 Score=47.82 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=38.6
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
.+.++|..|+.. ||-+.+-+..+|+.++||++.|+..|-+.
T Consensus 5 ~q~~mv~~~s~~-T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 5 VQLELLNKLHLE-TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHH-HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 478899999999 99999999999999999999999999875
No 15
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=97.04 E-value=0.00055 Score=45.32 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=38.4
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
+.+++|++.+++ |-++..|++-|.+|+||++.|++..|++..
T Consensus 3 ~e~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 3 QEKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp CCHHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred chHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 467899999999 999999999999999999999999998653
No 16
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.01 E-value=0.0012 Score=47.78 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=38.1
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
+.+++|++.+++ |-+++.|+.-|.+++||+|.|++..|.+.+
T Consensus 28 ~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 28 ASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 357899999999 899999999999999999999999988643
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.93 E-value=0.0021 Score=45.03 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=38.1
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
..+++|++.+++ |-+.+.|++-|.+++||+|.|++..|.+..
T Consensus 8 ~~~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 8 VDEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp SCHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 357899999999 899999999999999999999999998654
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.84 E-value=0.0013 Score=43.69 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=37.0
Q ss_pred cchHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 8 ~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
.+.+++|++.+++ |-+++.|+.-|++++||+|.|++..|++
T Consensus 6 ~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3457899999999 8999999999999999999999998874
No 19
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.77 E-value=0.0023 Score=43.24 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
+++|++.+++ +=.+.+.|++.|.+++||++.||+..|.++
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5689999999 444999999999999999999999998754
No 20
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.74 E-value=0.0017 Score=48.19 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=38.1
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
.+++|++.+++ |-+++.|++.|.+++||++.|++..|.+.+
T Consensus 29 ~ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47899999999 899999999999999999999999998655
No 21
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.74 E-value=0.0019 Score=43.97 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=36.4
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
-+++|++.+++ +=.+...+++.|.+++||++.||+..|..++
T Consensus 9 ~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 9 FQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 36789999999 5557777899999999999999999998754
No 22
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.60 E-value=0.0029 Score=42.58 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=35.1
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
-.++|++.+++ +=.+++.|++.|.+++||++.||+..|.+
T Consensus 12 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 12 FQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 36799999999 43499999999999999999999988764
No 23
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.58 E-value=0.0034 Score=41.28 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=34.0
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
++.|++.+++ +-.+.+.+++.|.+++||++.||+..|.
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5789999999 5568888999999999999999998875
No 24
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.49 E-value=0.0045 Score=44.59 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=38.4
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
...++|++.+++ |-+++.|++-|.+++||++.|++-.|++.+
T Consensus 28 ~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 28 IDQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp SCHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 457899999999 899999999999999999999999998754
No 25
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.42 E-value=0.0061 Score=44.15 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=37.0
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
-+++|++.+++ +-.+.+.+++.|.+++||++.||+..|...+
T Consensus 29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 46789999999 5568999999999999999999999998654
No 26
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.30 E-value=0.0053 Score=42.41 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=34.9
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
+++|++.+++ +-.+.+.+++.|.+++||++.||+..|..
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 5689999999 55789999999999999999999998875
No 27
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.22 E-value=0.0074 Score=44.75 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=37.6
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
..++|++++++ |-+++.|++.|..++||+|.|++-.|++..
T Consensus 21 n~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 21 MSRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 36789999999 999999999999999999999999998754
No 28
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=96.13 E-value=0.004 Score=49.46 Aligned_cols=63 Identities=10% Similarity=0.210 Sum_probs=56.8
Q ss_pred ccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecch
Q 026450 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMTF 225 (238)
Q Consensus 163 im~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d~ 225 (238)
+....+|+++...|+.++|++||++-.+-.=.|+.+.+.++.++.|.+.++++|+|..++.|.
T Consensus 30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~ 92 (172)
T 3f9u_A 30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDN 92 (172)
T ss_dssp CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTC
T ss_pred ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCc
Confidence 345678999999999999999999999888889999999999999999999999999997654
No 29
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.0047 Score=43.01 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=39.1
Q ss_pred CcchHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 7 ANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 7 ~~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
....+++|++++++ |-+.+.|++-|.+++||+|.|++-.|++.+
T Consensus 6 ~~~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 6 SGPPEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CCCCHHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34568899999999 899999999999999999999999998643
No 30
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=96.01 E-value=0.01 Score=41.84 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=38.2
Q ss_pred CCcchHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 026450 6 SANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (238)
Q Consensus 6 ~~~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff 48 (238)
+.-+.+..|+.|+-- ||+.+-.|+.+||--||||..|++-|=
T Consensus 13 mt~dmdavls~fvrs-tgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 13 MTLDMDAVLSDFVRS-TGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp SSCCHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh-cCCCcchhHHhhccCCccHhHHhhhHH
Confidence 445678999999999 999999999999999999999999884
No 31
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=95.98 E-value=0.0095 Score=46.13 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
+++|++..++ +-.+++.+++.|.+++||++.||+..|+.+.
T Consensus 67 ~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 6799999999 6678999999999999999999999998653
No 32
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.97 E-value=0.0069 Score=42.42 Aligned_cols=41 Identities=7% Similarity=0.308 Sum_probs=38.2
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
+.+.|++.+++ |-+.++|+.-|+++++|+|+|++=-|.+.+
T Consensus 19 e~e~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 19 ERQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 67789999999 899999999999999999999999998765
No 33
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.65 E-value=0.015 Score=40.70 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=37.3
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~w-dLe~Ai~lff~~~~ 52 (238)
..+.|++.+++ |-+++.|++-|.+++| |+|.|++-.|++.+
T Consensus 19 ~e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 19 HGSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 35689999999 9999999999999999 99999999998754
No 34
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.63 E-value=0.026 Score=40.12 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=37.0
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~~ 53 (238)
.+.|++..++ +-.+.+..++.|.++++|++.||+..|.....
T Consensus 20 ~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4589999999 66788888999999999999999999997654
No 35
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=95.53 E-value=0.02 Score=38.64 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=34.2
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
-++.|++.|++ |-|.+.|++-|..++||+|.|.+.-.+
T Consensus 11 ~~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 35899999999 999999999999999999999887543
No 36
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.46 E-value=0.014 Score=40.80 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=37.3
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHc-CCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQAT-SWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~-~wdLe~Ai~lff~~~~ 52 (238)
..++|++++++ |-+.+.|++-|.++ +||+|.|++-.|++.+
T Consensus 9 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 56789999999 99999999999999 7999999999998654
No 37
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.30 E-value=0.022 Score=41.93 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=37.9
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
..+.|++.+++ |-+.+.|++-|.+++||+|.|++-.|++.+
T Consensus 29 ~e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 29 DEAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 57889999999 999999999999999999999999998754
No 38
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.21 E-value=0.033 Score=36.31 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=35.2
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
...++|.+++++ |-+++.|++-|.+++ |+|.|++-.|++
T Consensus 8 ~~~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 8 VNQQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SCHHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 357899999999 899999999999997 999999988864
No 39
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=95.06 E-value=0.015 Score=48.00 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecchh
Q 026450 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMTFK 226 (238)
Q Consensus 168 ~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d~~ 226 (238)
..++|.+.|+.++|.+||++-.+-.=.|+.+-+.+|.++.|.+.++++||+..++.+..
T Consensus 27 ~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~ 85 (173)
T 3ira_A 27 WGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER 85 (173)
T ss_dssp SSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC
T ss_pred cCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc
Confidence 34889999999999999999888788899999999999999999999999999987754
No 40
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.01 E-value=0.035 Score=37.65 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=35.3
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
-+..|++.|++ |-+.+.|++-|..++||+|.|.+.-.+-
T Consensus 9 ~e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 9 LSSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp SHHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 35679999999 9999999999999999999999987654
No 41
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.037 Score=39.79 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=37.6
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~w-dLe~Ai~lff~~~~ 52 (238)
...++|++.+++ |-+++.|++.|.++++ |+|.|++-.|++.+
T Consensus 8 ~~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 8 LDESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp SCHHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 357899999999 9999999999999984 89999999998654
No 42
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=94.45 E-value=0.0068 Score=52.97 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
.++++|.+|... ||-+.+-+..+|+.++||++.|+..|-+.-
T Consensus 197 ~q~~~v~~~~~~-T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 238 (250)
T 1jkg_B 197 EQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHLK 238 (250)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 466899999999 999999999999999999999999997743
No 43
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.11 E-value=0.047 Score=38.41 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=35.4
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
..++|....+. ||+....|+.-|+.++||++.||...=..
T Consensus 9 t~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 9 SKELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35789999999 99999999999999999999999876543
No 44
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.00 E-value=0.11 Score=35.87 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=37.6
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~~ 53 (238)
.++.|.++.++=-.-+.++.+..|+++++|+|.||+..++....
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 46677777777678899999999999999999999999986543
No 45
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=93.88 E-value=0.09 Score=35.03 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=35.9
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
.++.+...+++=-..+..++++.|++++||++.||+......
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 456777777776788999999999999999999999988753
No 46
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.63 E-value=0.27 Score=35.62 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=37.5
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
.+-++.|..+||+-.|...=.+-|+++++||..||.+.-+...
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~ 66 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNA 66 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 4558999999988888999999999999999999998877543
No 47
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.33 E-value=0.1 Score=38.38 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=37.1
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcC-CCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATS-WKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~-wdLe~Ai~lff~~~~ 52 (238)
..++|++.+++ |-+.+.|++.|..++ ||+|.|++-.|++..
T Consensus 29 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 57899999999 999999999999985 999999999998654
No 48
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.75 E-value=0.16 Score=34.49 Aligned_cols=41 Identities=5% Similarity=0.148 Sum_probs=36.3
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
..+++++.++ +=.|.+.-++.|..++|||+.||..-+..+.
T Consensus 10 a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 10 AALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSG 50 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 3489999999 7789999999999999999999998886544
No 49
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=92.59 E-value=0.076 Score=42.55 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=58.7
Q ss_pred hhhhhcCCCccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecc
Q 026450 152 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMT 224 (238)
Q Consensus 152 ~La~LFrPP~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d 224 (238)
.|+..|.. +|-...+|++|...|+.++|.+||++-.+--=.|..|.+.+..++.|.++++.+||..-++.+
T Consensus 18 ~~~~~~~~--~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e 88 (151)
T 3ph9_A 18 TLSRGWGD--DITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE 88 (151)
T ss_dssp BSSTTSCT--TSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC
T ss_pred cccccccC--CCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC
Confidence 34444433 334557999999999999999999999877888999999999999999999889999988643
No 50
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.56 E-value=0.21 Score=34.78 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=37.4
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNES 53 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~w-dLe~Ai~lff~~~~~ 53 (238)
...+.|++.+++ |=+.+.|++.|..+++ |+|.|++-.|++...
T Consensus 8 ~~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 8 SSPSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp CSCSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 346689999998 9999999999999976 999999999987653
No 51
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.47 E-value=0.16 Score=39.62 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=38.0
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
...+.|.+.+++ |-+.+.|++.|..++||++.|++..|.+.+
T Consensus 77 ~~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 357789999999 899999999999999999999999998654
No 52
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=91.94 E-value=0.11 Score=40.58 Aligned_cols=72 Identities=7% Similarity=0.037 Sum_probs=59.6
Q ss_pred hhhhhhcCCCccccccchHHHHHHHHHhcCceEEEEec-cCCCcccccccccccCCHHHHHHhhcCeEEeeeecch
Q 026450 151 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMTF 225 (238)
Q Consensus 151 ~~La~LFrPP~dim~~g~f~~A~~~a~~~~kwllVniq-~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d~ 225 (238)
..|..+..+..+. .++.++...++.++|++||++- .+-.=.|..+.+.+..++.+++....+|++..++.+.
T Consensus 21 ~~l~~~~~~~~~~---~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~ 93 (154)
T 2ju5_A 21 QQTRPIAAANLQW---ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQ 93 (154)
T ss_dssp SCCCSSCCCCCCE---ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCS
T ss_pred hhhhhcccCCCCC---CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCcc
Confidence 3455566665554 7899999999999999999998 7778889999999999899988887899999986643
No 53
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=91.12 E-value=0.19 Score=37.30 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=53.7
Q ss_pred ccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecc
Q 026450 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMT 224 (238)
Q Consensus 165 ~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d 224 (238)
...+|+++...++.++|++||++-.+..=.|+.+...++..+.+.+.++.+|++..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 71 (130)
T 2kuc_A 12 RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDME 71 (130)
T ss_dssp BCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSS
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecC
Confidence 467899999999999999999999988888999998888889999999999999998766
No 54
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.32 E-value=0.28 Score=38.20 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=35.1
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 12 ~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
++|.+|+++ |=+...|+.-|..+++|++.||+..|...
T Consensus 78 ~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 78 QLMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 569999999 99999999999999999999999988754
No 55
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=88.69 E-value=0.53 Score=32.05 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=36.6
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
.-++.|+..|++ |-|.+.|++-|..++.|++.|.+...+=.
T Consensus 6 p~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 6 QLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred CChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 357799999999 99999999999999999999999877643
No 56
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=87.10 E-value=0.57 Score=35.63 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHH
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQ 45 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~ 45 (238)
.+.|.-.|+- +|++.+.|+.-|+.|+|||=.||-
T Consensus 66 ~edi~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 66 EDDIELVMNQ-TGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHH
Confidence 5678888888 899999999999999999988874
No 57
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.91 E-value=0.92 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=37.6
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
+.++.+.++.++=-..+.++-+..|++++||++.||+..+...
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 4677888888887788999999999999999999999888643
No 58
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=86.76 E-value=1.1 Score=29.38 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.9
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
-++.|+..|+. |-|.+.|++-|..++.|+|.|.+...+
T Consensus 4 ~e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 4 LSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 35689999998 999999999999999999999887654
No 59
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.59 E-value=0.13 Score=40.60 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=36.1
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
+-+|.|..+||+-.|...=.+.|++++|||+.||.++-+...
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~ 60 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERV 60 (129)
Confidence 458999999966667999999999999999999999877543
No 60
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=85.67 E-value=0.16 Score=37.75 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecc
Q 026450 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMT 224 (238)
Q Consensus 170 ~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d 224 (238)
+++...++.++|.+||++-.+..=.|+.+.+.++.++.+.+.++.+|+|..++.+
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 63 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVD 63 (130)
Confidence 8889999999999999999988888999999999999999999988999988764
No 61
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=79.99 E-value=1.4 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeec
Q 026450 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGM 223 (238)
Q Consensus 166 ~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~ 223 (238)
..+|+++...++.++|.+||++-.+-.=.|+.+.. +|.+..+.+.++.+++|..++.
T Consensus 15 ~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~ 71 (133)
T 3fk8_A 15 WTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDV 71 (133)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEEC
T ss_pred HhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeC
Confidence 35789999999999999999999988888998877 6888888888888899999876
No 62
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=74.52 E-value=1.5 Score=40.20 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=37.6
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
..++.|.+.+++ |-+++.|+.-|.+++||+|.|++-.|.+..
T Consensus 167 ~~~~~i~~l~~M--Gf~~~~~~~AL~a~~nn~~~A~e~L~~gip 208 (368)
T 1oqy_A 167 EYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTGIP 208 (368)
T ss_dssp THHHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTTTSST
T ss_pred chHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 367789999999 899999999999999999999998887543
No 63
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=73.86 E-value=3.6 Score=31.78 Aligned_cols=40 Identities=10% Similarity=0.352 Sum_probs=37.2
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
.++++|.+++++ |-+...|++-|..++.|.|.|++-.|..
T Consensus 7 ~e~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 7 SERQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 478899999999 9999999999999999999999988875
No 64
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=70.56 E-value=4.2 Score=34.33 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=35.5
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~ 50 (238)
-.+|.+..+. ||+.--.++.-|+.++||+|.|+..-=..
T Consensus 4 a~~VKeLRe~-TGagmmdCKkAL~e~~GD~ekAie~LR~k 42 (196)
T 1aip_C 4 MELIKKLREA-TGAGMMDVKRALEDAGWDEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 5689999999 99999999999999999999999977654
No 65
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=67.98 E-value=5.8 Score=29.52 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=49.3
Q ss_pred CCCcc-ccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecc
Q 026450 158 RPPFH-LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMT 224 (238)
Q Consensus 158 rPP~d-im~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d 224 (238)
.|+|. |-...+|+.+...++ +|++||++-.+-.=.|..+...+++++.+.+..+ +++|..++.+
T Consensus 10 ~~~f~~~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~ 74 (134)
T 2fwh_A 10 HLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVT 74 (134)
T ss_dssp CCCCEECCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECT
T ss_pred CCCcEEecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCC
Confidence 36776 445567777766543 7899999988877889998888888888888887 5899888763
No 66
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=65.71 E-value=5 Score=35.74 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=35.1
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
..+|.+..+. ||+.--.++.-|+.++||+|.|+..-=.
T Consensus 5 a~~VKeLRe~-TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRK-TGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5689999999 9999999999999999999999998765
No 67
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=62.90 E-value=15 Score=26.08 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=37.6
Q ss_pred cchHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 8 ~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
.+...+|.+..+|----.....++.|+.++.|.|.+|+..+++.
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 34567888888886677889999999999999999999999963
No 68
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=61.06 E-value=20 Score=23.78 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=37.2
Q ss_pred chHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 026450 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (238)
Q Consensus 9 ~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~ 51 (238)
-.+++|.+-..+--|.+..+-++=|+++|-|+..||+..++..
T Consensus 8 vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 8 IPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp SCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 3578898888888999999999999999999999999887654
No 69
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.58 E-value=13 Score=25.08 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=33.0
Q ss_pred cchHHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHh
Q 026450 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFY 48 (238)
Q Consensus 8 ~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~w-dLe~Ai~lff 48 (238)
.+..+.+++.+++ |.+.+.|..-|+.+|. .|+.|++--.
T Consensus 7 ~vn~qmlq~L~eM--GFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 7 GVNRQMLQELVNA--GCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp SCCHHHHHHHHHH--HCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHc--CCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567789999999 9999999999999986 5999987543
No 70
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=54.42 E-value=9.5 Score=29.23 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=35.7
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~w-dLe~Ai~lff~~~~ 52 (238)
..+.|.+.+++ |=+...|+.-|..+++ |+|.|++-.+++..
T Consensus 3 d~~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 3 DESSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp CTHHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 35688999998 9999999999999976 99999998887654
No 71
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=49.55 E-value=6.6 Score=26.45 Aligned_cols=42 Identities=5% Similarity=0.144 Sum_probs=32.6
Q ss_pred cchHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 8 ~~~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
.++.+.+.++.++=-.-|.++=+..|++++|+++.||+..++
T Consensus 10 ~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356788999999978899999999999999999999987654
No 72
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=39.44 E-value=18 Score=24.17 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=27.9
Q ss_pred HHHHHhhcccccCCCHHHH--HHHHHHcCCCHHHHHHHH
Q 026450 11 QSMVSSFLEIAVGQTAETA--VQFLQATSWKLDEAIQLF 47 (238)
Q Consensus 11 ~~~i~~F~~iTtg~~~~~A--~~~Le~~~wdLe~Ai~lf 47 (238)
.+.|.+.+++ |-+.+-+ .++|+..++|+..|++..
T Consensus 11 ~~al~qMl~M--GF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 11 IESLSQMLSM--GFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHTT--TCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCccccHHHHHHHHccCCHHHHHHHh
Confidence 4578888888 5555555 699999999999999875
No 73
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=36.35 E-value=32 Score=29.37 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=31.8
Q ss_pred cchHHHHHhhcccc------cCCCHHHHHHHHHHcCCCHHHHHHHH
Q 026450 8 NDKQSMVSSFLEIA------VGQTAETAVQFLQATSWKLDEAIQLF 47 (238)
Q Consensus 8 ~~~~~~i~~F~~iT------tg~~~~~A~~~Le~~~wdLe~Ai~lf 47 (238)
.++++.|++|.+.. --.|...-.+||.+++||++.|..++
T Consensus 28 ~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l 73 (296)
T 1aua_A 28 SAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMF 73 (296)
T ss_dssp TTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 34677888886532 23678999999999999999999886
No 74
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=35.41 E-value=39 Score=29.62 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=32.0
Q ss_pred chHHHHHhhcccc------cCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 026450 9 DKQSMVSSFLEIA------VGQTAETAVQFLQATSWKLDEAIQLFY 48 (238)
Q Consensus 9 ~~~~~i~~F~~iT------tg~~~~~A~~~Le~~~wdLe~Ai~lff 48 (238)
++++.|++|.+.- --.|...-.+||.+++||++.|..++-
T Consensus 38 ~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 38 EQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4667788776542 246788999999999999999999873
No 75
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=35.15 E-value=32 Score=34.64 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=36.2
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lff~~~~ 52 (238)
..+.|+...++ |-+.+.|+.-|+.+++|+|.||+-.|++..
T Consensus 720 ~~e~i~~l~~m--Gf~~~~a~~aL~~t~~~~eraidwlfs~~d 760 (854)
T 3ihp_A 720 PEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHID 760 (854)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence 56788888777 899999999999999999999999998643
No 76
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=34.16 E-value=27 Score=28.51 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=26.4
Q ss_pred hHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHH
Q 026450 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLF 47 (238)
Q Consensus 10 ~~~~i~~F~~iTtg~~~~~A~~~Le~~~wdLe~Ai~lf 47 (238)
+..++...++. +--+.+.....|..+++|++.|+.+-
T Consensus 102 R~~K~~eL~s~-G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSL-GFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHT-TCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhc-CCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 45667777777 66777777777777777777777653
No 77
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=33.37 E-value=20 Score=26.77 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 22 VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 22 tg~~~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
-.-++++|+|+| +|||.|-+.|+.
T Consensus 70 deL~e~q~Rqll----fDle~aY~~F~~ 93 (96)
T 2j9u_A 70 DTLTETQIRELL----FDLELAYKSFYA 93 (96)
T ss_dssp CBCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 456899999999 789999999985
No 78
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=32.15 E-value=87 Score=22.51 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=44.8
Q ss_pred CccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhc--CeEEeeeecchh
Q 026450 160 PFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVGMTFK 226 (238)
Q Consensus 160 P~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~--~Fifwq~~~d~~ 226 (238)
-++|-...+|+++...++.++|.+||++-.+.-=.|+.+. +.+.++.++ ++.|..++.|..
T Consensus 18 v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~------~~l~~l~~~~~~v~~~~vd~d~~ 80 (124)
T 1xfl_A 18 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIA------PFFADLAKKLPNVLFLKVDTDEL 80 (124)
T ss_dssp CEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHH------HHHHHHHHHCSSEEEEEEETTTS
T ss_pred EEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHH------HHHHHHHHHCCCcEEEEEECccC
Confidence 3455567789999999999999999999887666677664 344555554 688888876643
No 79
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=31.12 E-value=68 Score=22.68 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=44.0
Q ss_pred CCccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhc--CeEEeeeecch
Q 026450 159 PPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVGMTF 225 (238)
Q Consensus 159 PP~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~--~Fifwq~~~d~ 225 (238)
+..+|-....|+++...++.++|.+||.+-.+..=.|+.+. +.+.++.++ ++.|..++.+.
T Consensus 15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~~~~~v~~~~v~~~~ 77 (130)
T 1wmj_A 15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIA------PVFAEYAKKFPGAVFLKVDVDE 77 (130)
T ss_dssp SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSH------HHHHHHHHHCTTBCCEECCTTT
T ss_pred ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCCEEEEEeccc
Confidence 44555566889999999999999999999887777777775 345555554 56666665543
No 80
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=30.76 E-value=65 Score=22.05 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=43.2
Q ss_pred ccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhc--CeEEeeeecch
Q 026450 161 FHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVGMTF 225 (238)
Q Consensus 161 ~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~--~Fifwq~~~d~ 225 (238)
.+|-....|+++...++..+|.+||.+-.+..=.|+.+. +.+.++.++ ++.|..++.+.
T Consensus 7 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~~~~~v~~~~v~~~~ 67 (113)
T 1ti3_A 7 IACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIA------PIFAELAKKFPNVTFLKVDVDE 67 (113)
T ss_dssp EEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHH------HHHHHHHHHCSSEEEEEEETTT
T ss_pred eEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHH------HHHHHHHHhCCCcEEEEEEccc
Confidence 445566789999999998999999999887666677664 345555554 68888776654
No 81
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=30.64 E-value=58 Score=22.56 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=44.2
Q ss_pred CccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhc--CeEEeeeecch
Q 026450 160 PFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVGMTF 225 (238)
Q Consensus 160 P~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~--~Fifwq~~~d~ 225 (238)
..+|-...+|+++...++.++|.+||.+-.+..=.|+.+. +.+.++.++ ++.|..++.+.
T Consensus 8 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~v~~~~ 69 (118)
T 2vm1_A 8 VIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIA------PVFAEYAKKFPGAIFLKVDVDE 69 (118)
T ss_dssp EEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEETTT
T ss_pred eEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCcEEEEEEccc
Confidence 4455567899999999999999999999887666676664 445555554 67777776654
No 82
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=30.48 E-value=55 Score=22.50 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=39.9
Q ss_pred ccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecchh
Q 026450 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMTFK 226 (238)
Q Consensus 165 ~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d~~ 226 (238)
...+|+++...++.++|.+||.+-.+..=.|+.+...+ +.+.+-...++.|..++.+..
T Consensus 9 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~ 67 (112)
T 1ep7_A 9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDAV 67 (112)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTT
T ss_pred CHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCeEEEEEECCch
Confidence 45678888888887789999999887666677664332 223333334788888876653
No 83
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=29.70 E-value=30 Score=26.09 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.1
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 026450 22 VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (238)
Q Consensus 22 tg~~~~~A~~~Le~~~wdLe~Ai~lff~ 49 (238)
---++++|+|+| +|||.|-+.|+.
T Consensus 75 deL~e~q~Rqll----fDle~aY~~F~~ 98 (102)
T 2j9w_A 75 DELDDSQVRQML----FDLESAYNAFNR 98 (102)
T ss_dssp CBCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 456899999999 789999999985
No 84
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=25.83 E-value=67 Score=22.56 Aligned_cols=61 Identities=8% Similarity=0.125 Sum_probs=44.1
Q ss_pred CCccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhc--CeEEeeeecch
Q 026450 159 PPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVGMTF 225 (238)
Q Consensus 159 PP~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~--~Fifwq~~~d~ 225 (238)
|...+....+|+++...|+..+|.+||.+-.+..=.|+.+. +.+.++.++ ++.|..++.|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~vd~~~ 75 (122)
T 2vlu_A 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMA------PVFADLAKKFPNAVFLKVDVDE 75 (122)
T ss_dssp CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEETTT
T ss_pred cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHH------HHHHHHHHHCCCcEEEEEECCC
Confidence 55667778899999999999999999999887666666663 334444443 37777776654
No 85
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=23.92 E-value=81 Score=28.14 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=30.7
Q ss_pred chHHHHHhhcccc-------cCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 026450 9 DKQSMVSSFLEIA-------VGQTAETAVQFLQATSWKLDEAIQLFY 48 (238)
Q Consensus 9 ~~~~~i~~F~~iT-------tg~~~~~A~~~Le~~~wdLe~Ai~lff 48 (238)
.+++.|.+|.+.. --.+...-.+||.+++||++.|..++-
T Consensus 11 ~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~ 57 (403)
T 1olm_A 11 RQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLR 57 (403)
T ss_dssp HHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHH
Confidence 4666777775421 246788999999999999999999863
No 86
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=21.52 E-value=1.3e+02 Score=21.64 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=43.7
Q ss_pred CccccccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhc--CeEEeeeecchh
Q 026450 160 PFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVGMTFK 226 (238)
Q Consensus 160 P~dim~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~--~Fifwq~~~d~~ 226 (238)
-..|....+|+++...+..++|.+||++-.+..=.|+.+. +.+.++.++ ++.|..++.|..
T Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~------~~l~~l~~~~~~v~~~~v~~~~~ 88 (139)
T 3d22_A 26 VHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIA------PYYIELSENYPSLMFLVIDVDEL 88 (139)
T ss_dssp CEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEETTTS
T ss_pred EEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHH------HHHHHHHHHCCCCEEEEEeCccc
Confidence 3455557899999999998999999999887666676664 334444443 578887766543
No 87
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.39 E-value=1.3e+02 Score=21.28 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=41.5
Q ss_pred hhcCCCccc--cccchHHHHHHHHHhcCceEEEEeccCCCcccccccccccCCHHHHHHhhcCeEEeeeecchh
Q 026450 155 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVGMTFK 226 (238)
Q Consensus 155 ~LFrPP~di--m~~g~f~~A~~~a~~~~kwllVniq~~~~F~~~~lnRD~W~~~~v~~~v~~~Fifwq~~~d~~ 226 (238)
.||.++-.+ +....|+... .+.+|.+||++-.+..=.|+.+...+ +.+.+-.+.++.|..++.+..
T Consensus 11 ~l~~~~~~v~~l~~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~ 78 (130)
T 2dml_A 11 GLYSSSDDVIELTPSNFNREV---IQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKH 78 (130)
T ss_dssp CSSCTTSSSEECCTTTHHHHT---TTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTC
T ss_pred cccCCCCCcEECCHHHHHHHH---hcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCC
Confidence 455544322 3445666533 35688999999888777888886543 344444555688887766543
Done!