Query 026451
Match_columns 238
No_of_seqs 195 out of 1327
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06479 ACD_HspB7_like Alpha c 99.9 1.4E-21 3.1E-26 147.2 9.7 79 29-108 2-81 (81)
2 COG0071 IbpA Molecular chapero 99.9 3.3E-21 7.1E-26 158.8 12.4 91 23-114 38-138 (146)
3 cd06472 ACD_ScHsp26_like Alpha 99.9 3.8E-21 8.1E-26 146.6 10.4 82 27-108 1-92 (92)
4 cd06497 ACD_alphaA-crystallin_ 99.9 5.8E-21 1.3E-25 145.0 10.8 79 29-108 4-86 (86)
5 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 1.1E-20 2.4E-25 142.5 10.9 79 29-108 1-83 (83)
6 cd06498 ACD_alphaB-crystallin_ 99.8 1.1E-20 2.3E-25 143.1 10.6 79 30-109 2-84 (84)
7 PRK11597 heat shock chaperone 99.8 1.6E-20 3.5E-25 155.2 11.1 89 23-114 30-127 (142)
8 PRK10743 heat shock protein Ib 99.8 2.4E-20 5.2E-25 153.2 10.8 83 26-111 35-126 (137)
9 cd06476 ACD_HspB2_like Alpha c 99.8 3.9E-20 8.4E-25 139.8 10.6 78 30-108 2-83 (83)
10 cd06475 ACD_HspB1_like Alpha c 99.8 5.2E-20 1.1E-24 139.8 10.5 79 28-107 3-85 (86)
11 cd06471 ACD_LpsHSP_like Group 99.8 5.8E-20 1.3E-24 139.9 10.3 81 26-108 1-93 (93)
12 PF00011 HSP20: Hsp20/alpha cr 99.8 2.1E-19 4.5E-24 138.1 11.9 85 29-114 1-93 (102)
13 cd06470 ACD_IbpA-B_like Alpha- 99.8 2.2E-19 4.8E-24 136.8 11.2 80 26-108 1-90 (90)
14 cd06477 ACD_HspB3_Like Alpha c 99.8 6.7E-19 1.4E-23 133.3 10.3 76 31-107 3-82 (83)
15 cd06526 metazoan_ACD Alpha-cry 99.8 8.5E-19 1.8E-23 131.4 9.9 74 34-108 6-83 (83)
16 cd06481 ACD_HspB9_like Alpha c 99.8 8.8E-19 1.9E-23 133.3 9.6 76 32-108 4-87 (87)
17 cd06464 ACD_sHsps-like Alpha-c 99.8 5.8E-18 1.3E-22 125.0 9.7 79 29-108 1-88 (88)
18 cd06482 ACD_HspB10 Alpha cryst 99.7 1.2E-17 2.5E-22 127.6 9.9 74 33-107 6-86 (87)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 1.7E-17 3.7E-22 127.7 9.5 82 26-108 6-91 (91)
20 KOG3591 Alpha crystallins [Pos 99.7 3.9E-16 8.5E-21 132.9 9.8 88 26-114 63-154 (173)
21 KOG0710 Molecular chaperone (s 99.5 1E-13 2.2E-18 120.0 6.5 95 19-113 78-184 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.4 9E-13 1.9E-17 93.3 9.9 78 30-108 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.2 9.3E-11 2E-15 85.7 8.9 71 30-111 1-71 (78)
24 cd06463 p23_like Proteins cont 98.9 2.1E-08 4.6E-13 72.6 9.0 76 30-111 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.7 1.5E-07 3.3E-12 80.5 10.1 79 23-111 89-170 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.6 3E-07 6.4E-12 67.8 8.1 77 29-111 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 3.7E-06 7.9E-11 60.4 10.9 77 26-108 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.0 8.9E-05 1.9E-09 57.8 10.6 78 26-110 1-78 (108)
29 PF08190 PIH1: pre-RNA process 97.8 8.9E-05 1.9E-09 67.5 8.8 65 34-107 260-327 (328)
30 cd06467 p23_NUDC_like p23_like 97.7 0.00026 5.6E-09 52.2 8.5 75 28-111 1-77 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 97.7 0.00032 6.9E-09 52.2 8.6 76 29-110 1-76 (84)
32 cd06488 p23_melusin_like p23_l 97.6 0.00085 1.8E-08 50.6 9.7 79 27-111 2-80 (87)
33 cd06468 p23_CacyBP p23_like do 97.5 0.0013 2.9E-08 49.3 10.1 79 27-111 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.5 0.0015 3.1E-08 48.9 9.4 75 28-111 1-77 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.0 0.0069 1.5E-07 46.7 9.2 77 25-111 5-83 (93)
36 cd00237 p23 p23 binds heat sho 97.0 0.015 3.2E-07 45.9 10.8 78 26-111 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.2 0.027 5.9E-07 52.7 9.0 81 25-111 156-236 (356)
38 cd06490 p23_NCB5OR p23_like do 95.4 0.29 6.3E-06 36.9 10.1 77 28-111 1-80 (87)
39 cd06492 p23_mNUDC_like p23-lik 95.2 0.24 5.2E-06 37.5 9.0 75 28-111 1-79 (87)
40 KOG1309 Suppressor of G2 allel 95.1 0.081 1.8E-06 45.9 6.9 80 25-110 3-82 (196)
41 cd06495 p23_NUDCD3_like p23-li 94.8 0.39 8.5E-06 37.7 9.5 80 25-110 4-86 (102)
42 KOG3158 HSP90 co-chaperone p23 76.0 10 0.00022 32.8 6.5 80 24-111 6-85 (180)
43 cd06482 ACD_HspB10 Alpha cryst 75.2 5.8 0.00013 30.1 4.4 34 77-111 9-42 (87)
44 KOG2265 Nuclear distribution p 74.6 21 0.00045 30.9 8.0 86 17-111 10-97 (179)
45 cd06478 ACD_HspB4-5-6 Alpha-cr 71.0 8.9 0.00019 28.4 4.5 31 77-108 8-38 (83)
46 PF14913 DPCD: DPCD protein fa 70.2 30 0.00066 30.3 8.1 79 24-110 85-170 (194)
47 PF11120 DUF2636: Protein of u 69.7 3.6 7.9E-05 29.7 2.0 20 211-230 10-29 (62)
48 COG5091 SGT1 Suppressor of G2 67.5 3.7 7.9E-05 38.2 2.0 83 24-111 175-257 (368)
49 cd06471 ACD_LpsHSP_like Group 65.1 14 0.0003 27.4 4.5 33 77-110 11-43 (93)
50 PF03672 UPF0154: Uncharacteri 64.3 5.6 0.00012 28.9 2.1 27 210-236 2-33 (64)
51 KOG1667 Zn2+-binding protein M 64.3 30 0.00066 31.9 7.2 82 27-113 216-297 (320)
52 cd06470 ACD_IbpA-B_like Alpha- 64.3 15 0.00032 27.5 4.6 34 77-111 12-45 (90)
53 PF13349 DUF4097: Domain of un 64.2 39 0.00085 27.1 7.4 73 28-105 68-147 (166)
54 PF00011 HSP20: Hsp20/alpha cr 62.6 19 0.00041 26.9 4.9 32 77-109 8-39 (102)
55 cd06526 metazoan_ACD Alpha-cry 61.7 15 0.00033 26.8 4.1 33 77-110 8-40 (83)
56 cd06479 ACD_HspB7_like Alpha c 61.0 18 0.00038 27.0 4.4 32 77-109 9-40 (81)
57 PRK10743 heat shock protein Ib 59.3 19 0.00041 29.5 4.7 33 77-110 46-78 (137)
58 cd06477 ACD_HspB3_Like Alpha c 55.4 25 0.00054 26.4 4.4 31 36-66 51-82 (83)
59 PF05957 DUF883: Bacterial pro 55.4 8.4 0.00018 29.1 1.9 27 202-228 66-94 (94)
60 KOG3591 Alpha crystallins [Pos 55.0 17 0.00036 31.1 3.8 42 40-85 120-162 (173)
61 PHA03165 hypothetical protein; 54.1 8.7 0.00019 26.4 1.5 20 214-233 24-43 (57)
62 COG4575 ElaB Uncharacterized c 54.0 8.5 0.00018 30.5 1.7 19 210-228 86-104 (104)
63 PF13056 DUF3918: Protein of u 51.5 10 0.00023 25.4 1.6 25 211-235 3-27 (43)
64 cd06497 ACD_alphaA-crystallin_ 51.3 27 0.00058 26.1 4.0 31 77-108 11-41 (86)
65 PRK05518 rpl6p 50S ribosomal p 51.1 62 0.0014 27.8 6.7 49 44-107 9-57 (180)
66 cd06480 ACD_HspB8_like Alpha-c 49.6 31 0.00068 26.4 4.2 31 35-65 58-89 (91)
67 PRK11597 heat shock chaperone 48.4 35 0.00075 28.3 4.6 32 77-109 44-75 (142)
68 PF06553 BNIP3: BNIP3; InterP 47.1 13 0.00029 32.6 2.0 19 212-230 172-190 (197)
69 TIGR03653 arch_L6P archaeal ri 47.1 85 0.0018 26.7 6.9 45 48-107 7-51 (170)
70 PF03823 Neurokinin_B: Neuroki 47.0 15 0.00033 26.1 1.9 16 211-226 5-20 (59)
71 PF13334 DUF4094: Domain of un 47.0 13 0.00028 28.8 1.7 21 210-230 4-24 (95)
72 TIGR03654 L6_bact ribosomal pr 46.0 82 0.0018 26.8 6.7 44 48-107 11-54 (175)
73 PF14730 DUF4468: Domain of un 45.7 79 0.0017 23.6 5.9 65 37-108 1-85 (91)
74 PRK01844 hypothetical protein; 45.6 18 0.00038 27.0 2.1 17 212-228 11-27 (72)
75 cd06469 p23_DYX1C1_like p23_li 45.6 46 0.00099 23.5 4.4 34 35-69 36-70 (78)
76 PF05552 TM_helix: Conserved T 45.6 19 0.00041 24.4 2.2 18 212-229 18-35 (53)
77 PRK10404 hypothetical protein; 44.9 25 0.00054 27.5 3.0 27 202-228 73-101 (101)
78 PRK10132 hypothetical protein; 43.8 17 0.00036 28.9 1.9 19 210-228 89-107 (108)
79 cd06472 ACD_ScHsp26_like Alpha 43.3 37 0.0008 25.2 3.7 31 34-65 59-90 (92)
80 cd06498 ACD_alphaB-crystallin_ 43.0 43 0.00093 24.9 4.0 31 77-108 8-38 (84)
81 cd06475 ACD_HspB1_like Alpha c 43.0 61 0.0013 24.1 4.8 32 77-109 11-42 (86)
82 cd06476 ACD_HspB2_like Alpha c 43.0 41 0.00088 25.0 3.9 32 77-109 8-39 (83)
83 PRK00753 psbL photosystem II r 42.4 24 0.00052 23.1 2.1 17 213-229 21-37 (39)
84 PF09813 Coiled-coil_56: Coile 42.3 27 0.00058 27.6 2.8 31 197-227 39-69 (100)
85 PF04972 BON: BON domain; Int 41.9 49 0.0011 22.5 3.9 26 44-70 12-37 (64)
86 PTZ00027 60S ribosomal protein 41.1 87 0.0019 27.2 6.1 52 43-107 8-59 (190)
87 PF12992 DUF3876: Domain of un 40.8 79 0.0017 24.5 5.2 39 25-64 25-68 (95)
88 PRK05498 rplF 50S ribosomal pr 40.7 99 0.0022 26.3 6.4 44 48-107 12-55 (178)
89 PF08308 PEGA: PEGA domain; I 40.5 83 0.0018 21.9 5.0 38 29-66 28-66 (71)
90 cd06464 ACD_sHsps-like Alpha-c 40.4 62 0.0013 22.8 4.4 35 77-112 8-42 (88)
91 PF04478 Mid2: Mid2 like cell 39.9 12 0.00025 31.7 0.5 14 225-238 73-86 (154)
92 PF10031 DUF2273: Small integr 38.4 29 0.00062 23.9 2.2 24 203-226 2-25 (51)
93 PF12911 OppC_N: N-terminal TM 37.1 55 0.0012 21.9 3.5 18 196-213 3-20 (56)
94 CHL00140 rpl6 ribosomal protei 37.0 1E+02 0.0022 26.4 5.8 44 48-107 12-55 (178)
95 cd06481 ACD_HspB9_like Alpha c 36.5 49 0.0011 24.7 3.4 31 34-65 53-85 (87)
96 PRK00523 hypothetical protein; 36.2 30 0.00065 25.7 2.1 17 212-228 12-28 (72)
97 PF02419 PsbL: PsbL protein; 35.7 34 0.00074 22.2 2.0 17 213-229 19-35 (37)
98 COG3763 Uncharacterized protei 35.6 28 0.0006 25.8 1.8 19 210-228 9-27 (71)
99 cd07698 IgC_MHC_I_alpha3 Class 33.8 1.9E+02 0.0041 21.2 6.6 63 34-99 14-81 (93)
100 PF06072 Herpes_US9: Alphaherp 33.4 34 0.00074 24.6 1.9 18 211-228 42-59 (60)
101 PRK12700 flgH flagellar basal 33.2 1E+02 0.0022 27.6 5.5 34 57-92 155-191 (230)
102 PRK12701 flgH flagellar basal 32.7 1.1E+02 0.0024 27.4 5.6 40 51-92 145-190 (230)
103 CHL00038 psbL photosystem II p 32.7 43 0.00093 21.8 2.1 17 213-229 20-36 (38)
104 PF06612 DUF1146: Protein of u 31.9 43 0.00093 22.8 2.2 20 210-229 28-47 (48)
105 PRK12698 flgH flagellar basal 31.8 1.2E+02 0.0025 27.1 5.6 34 57-92 148-184 (224)
106 cd06467 p23_NUDC_like p23_like 31.4 92 0.002 22.2 4.1 31 77-107 9-39 (85)
107 PRK12697 flgH flagellar basal 30.8 1.1E+02 0.0024 27.3 5.3 34 57-92 151-187 (226)
108 TIGR03493 cellullose_BcsF cell 30.2 40 0.00088 24.3 1.9 18 211-228 10-27 (62)
109 PRK12407 flgH flagellar basal 30.1 1.3E+02 0.0028 26.8 5.6 40 51-92 136-181 (221)
110 PTZ00179 60S ribosomal protein 28.7 1.7E+02 0.0037 25.3 6.0 47 48-107 12-58 (189)
111 COG0071 IbpA Molecular chapero 28.2 1.1E+02 0.0024 24.8 4.5 36 34-70 99-135 (146)
112 PRK10568 periplasmic protein; 27.3 3.9E+02 0.0085 23.0 8.0 25 44-69 73-97 (203)
113 PRK12696 flgH flagellar basal 25.4 1.3E+02 0.0028 27.0 4.8 34 57-92 161-197 (236)
114 COG2991 Uncharacterized protei 25.3 35 0.00075 25.5 0.9 19 210-228 9-27 (77)
115 KOG3413 Mitochondrial matrix p 25.1 34 0.00075 28.9 0.9 25 84-108 65-89 (156)
116 PF02038 ATP1G1_PLM_MAT8: ATP1 24.7 63 0.0014 22.4 2.0 15 210-225 18-32 (50)
117 cd07699 IgC_L Immunoglobulin C 24.7 50 0.0011 25.0 1.7 40 23-62 6-45 (100)
118 cd00503 Frataxin Frataxin is a 24.0 73 0.0016 24.9 2.6 18 91-108 28-45 (105)
119 COG2063 FlgH Flagellar basal b 23.6 1.9E+02 0.004 26.2 5.3 37 54-92 155-194 (230)
120 PF00672 HAMP: HAMP domain; I 23.4 74 0.0016 21.6 2.3 19 212-230 6-24 (70)
121 PF07873 YabP: YabP family; I 23.1 51 0.0011 23.4 1.4 23 45-68 22-44 (66)
122 PF11772 EpuA: DNA-directed RN 22.9 57 0.0012 22.2 1.5 17 211-227 4-20 (47)
123 KOG3260 Calcyclin-binding prot 22.5 1.5E+02 0.0032 26.2 4.3 90 14-109 63-153 (224)
124 TIGR03422 mito_frataxin fratax 22.1 66 0.0014 25.0 1.9 16 94-109 30-45 (97)
125 PF06645 SPC12: Microsomal sig 21.9 74 0.0016 23.5 2.1 18 210-227 16-33 (76)
126 PRK10381 LPS O-antigen length 21.9 86 0.0019 29.9 3.1 32 195-226 26-58 (377)
127 PF01491 Frataxin_Cyay: Fratax 21.7 1E+02 0.0022 24.2 3.0 18 92-109 31-48 (109)
128 PRK00446 cyaY frataxin-like pr 21.4 80 0.0017 24.8 2.3 17 93-109 29-45 (105)
129 PF05781 MRVI1: MRVI1 protein; 21.0 62 0.0013 32.6 1.9 22 212-233 485-506 (538)
130 TIGR03421 FeS_CyaY iron donor 20.9 80 0.0017 24.7 2.2 16 93-108 27-42 (102)
131 PRK13726 conjugal transfer pil 20.8 2.1E+02 0.0045 24.8 5.0 57 46-111 128-184 (188)
132 TIGR01478 STEVOR variant surfa 20.8 77 0.0017 29.5 2.4 23 213-235 271-293 (295)
133 PF11712 Vma12: Endoplasmic re 20.7 72 0.0016 26.0 2.0 33 198-230 68-104 (142)
134 cd06494 p23_NUDCD2_like p23-li 20.6 1.7E+02 0.0037 22.2 4.0 30 77-106 16-45 (93)
135 PRK14748 kdpF potassium-transp 20.5 83 0.0018 19.4 1.7 15 210-224 4-18 (29)
136 PRK12788 flgH flagellar basal 20.2 1.8E+02 0.004 26.1 4.6 36 55-92 157-195 (234)
137 PF05309 TraE: TraE protein; 20.2 1.6E+02 0.0034 25.0 4.1 22 46-68 128-149 (187)
No 1
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.86 E-value=1.4e-21 Score=147.18 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=74.4
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEE-eCCEEEEEEe
Q 026451 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKF-DGELLYVTVP 107 (238)
Q Consensus 29 di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~-~dGvL~ItlP 107 (238)
||.++++.|+|.++||||+|++|+|++. ++.|+|+|+++..++.+.++|.|+|.||.+||+++|+|+| +||+|+|+++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~-~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS-NNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 7899999999999999999999999999 9999999999776666668999999999999999999998 8999999998
Q ss_pred C
Q 026451 108 K 108 (238)
Q Consensus 108 K 108 (238)
|
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 6
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.3e-21 Score=158.79 Aligned_cols=91 Identities=30% Similarity=0.484 Sum_probs=82.0
Q ss_pred ccccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee----c------ceEeeEEEEEEECCCCCccCC
Q 026451 23 EFVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS----D------NRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 23 ~~~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~----e------~~~~r~F~r~~~LP~~vD~~~ 92 (238)
.+.|++||+++++.|.|.++||||++++|+|++. ++.|+|+|++... + ++..+.|+|+|.||..+|.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~-~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE-CCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 4679999999999999999999999999999999 9999999998752 1 223469999999999999999
Q ss_pred eeEEEeCCEEEEEEeCcCCccC
Q 026451 93 ISGKFDGELLYVTVPKRAKEES 114 (238)
Q Consensus 93 I~A~~~dGvL~ItlPK~~~~~~ 114 (238)
|+|+|.||||+|+|||..+++.
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~~ 138 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEEK 138 (146)
T ss_pred eeeEeeCcEEEEEEeccccccc
Confidence 9999999999999999987653
No 3
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.85 E-value=3.8e-21 Score=146.62 Aligned_cols=82 Identities=35% Similarity=0.599 Sum_probs=72.4
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee----cc------eEeeEEEEEEECCCCCccCCeeEE
Q 026451 27 SSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS----DN------RYIMRFEQMFPLPPNSDMDKISGK 96 (238)
Q Consensus 27 ~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~----e~------~~~r~F~r~~~LP~~vD~~~I~A~ 96 (238)
++||+|+++.|+|.++||||++++|+|++..++.|+|+|++... .+ +..+.|.|+|.||.++|.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999833589999987543 11 223699999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 026451 97 FDGELLYVTVPK 108 (238)
Q Consensus 97 ~~dGvL~ItlPK 108 (238)
|+||||+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 4
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.85 E-value=5.8e-21 Score=145.01 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=71.9
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEE-eCCEEEE
Q 026451 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKF-DGELLYV 104 (238)
Q Consensus 29 di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~-~dGvL~I 104 (238)
+|+++++.|.|.++||||+|++|+|++. ++.|+|+|++... .+.+.+.|.|+|.||+++|.++|+|+| +||||+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL-DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 7899999999999999999999999999 9999999987543 234446899999999999999999999 6999999
Q ss_pred EEeC
Q 026451 105 TVPK 108 (238)
Q Consensus 105 tlPK 108 (238)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 5
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.85 E-value=1.1e-20 Score=142.46 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=71.0
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEE-eCCEEEE
Q 026451 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKF-DGELLYV 104 (238)
Q Consensus 29 di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~-~dGvL~I 104 (238)
++.+++++|.|.++||||+|++|+|++. ++.|+|+|++... .+.+.+.|.|+|.||.+||.++|+|+| +||+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVL-GDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEE
Confidence 4688999999999999999999999999 9999999987542 234456899999999999999999999 5999999
Q ss_pred EEeC
Q 026451 105 TVPK 108 (238)
Q Consensus 105 tlPK 108 (238)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 6
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.84 E-value=1.1e-20 Score=143.06 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=71.3
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEEe-CCEEEEE
Q 026451 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKFD-GELLYVT 105 (238)
Q Consensus 30 i~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~~-dGvL~It 105 (238)
+..++++|.|.++||||+|++|+|++. ++.|+|+|++... .+.+.+.|.|+|.||.++|.++|+|+|+ ||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL-GDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 678899999999999999999999999 9999999976543 2345578999999999999999999996 9999999
Q ss_pred EeCc
Q 026451 106 VPKR 109 (238)
Q Consensus 106 lPK~ 109 (238)
+||.
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 7
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.84 E-value=1.6e-20 Score=155.16 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=75.5
Q ss_pred ccccceeEEE-cCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee--cc------eEeeEEEEEEECCCCCccCCe
Q 026451 23 EFVPSSGWTE-DSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS--DN------RYIMRFEQMFPLPPNSDMDKI 93 (238)
Q Consensus 23 ~~~P~~di~e-~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~--e~------~~~r~F~r~~~LP~~vD~~~I 93 (238)
.+.|++||++ +++.|.|.++||||++++|+|.|+ ++.|+|+|++... +. +..+.|.|+|.||++||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE-GTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE-CCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 3459999998 578999999999999999999999 9999999987543 11 2235899999999999998
Q ss_pred eEEEeCCEEEEEEeCcCCccC
Q 026451 94 SGKFDGELLYVTVPKRAKEES 114 (238)
Q Consensus 94 ~A~~~dGvL~ItlPK~~~~~~ 114 (238)
+|+|+||||+|+|||..+++.
T Consensus 107 ~A~~~nGVL~I~lPK~~~~~~ 127 (142)
T PRK11597 107 GATFVNGLLHIDLIRNEPEAI 127 (142)
T ss_pred cCEEcCCEEEEEEeccCcccc
Confidence 599999999999999754433
No 8
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.83 E-value=2.4e-20 Score=153.21 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=73.4
Q ss_pred cceeEEE-cCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec--c------eEeeEEEEEEECCCCCccCCeeEE
Q 026451 26 PSSGWTE-DSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD--N------RYIMRFEQMFPLPPNSDMDKISGK 96 (238)
Q Consensus 26 P~~di~e-~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e--~------~~~r~F~r~~~LP~~vD~~~I~A~ 96 (238)
|++||.+ +++.|.|.++||||++++|+|+++ ++.|+|+|++.... . +..+.|.|+|.||.+||.++ |+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQ-DNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 8999994 899999999999999999999999 99999999876431 1 23358999999999999995 99
Q ss_pred EeCCEEEEEEeCcCC
Q 026451 97 FDGELLYVTVPKRAK 111 (238)
Q Consensus 97 ~~dGvL~ItlPK~~~ 111 (238)
|+||||+|+|||..+
T Consensus 112 ~~dGVL~I~lPK~~~ 126 (137)
T PRK10743 112 LVNGLLYIDLERVIP 126 (137)
T ss_pred EeCCEEEEEEeCCCc
Confidence 999999999999744
No 9
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.83 E-value=3.9e-20 Score=139.84 Aligned_cols=78 Identities=13% Similarity=0.260 Sum_probs=70.0
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEEe-CCEEEEE
Q 026451 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKFD-GELLYVT 105 (238)
Q Consensus 30 i~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~~-dGvL~It 105 (238)
+..++++|.|.++||||+|++|+|++. ++.|+|+|++... .+.+.+.|.|+|.||.++|.++|+|+|+ ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTV-DNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 356789999999999999999999999 9999999987543 2355579999999999999999999996 9999999
Q ss_pred EeC
Q 026451 106 VPK 108 (238)
Q Consensus 106 lPK 108 (238)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 10
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.83 E-value=5.2e-20 Score=139.80 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=72.4
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEEe-CCEEE
Q 026451 28 SGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKFD-GELLY 103 (238)
Q Consensus 28 ~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~~-dGvL~ 103 (238)
.||++++++|.|.++||||+|++|+|++. ++.|+|+|++... .+.+.++|.|+|.||.++|.++|+|+|. ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTK-DGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEE-CCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 58999999999999999999999999999 9999999988653 2344579999999999999999999997 99999
Q ss_pred EEEe
Q 026451 104 VTVP 107 (238)
Q Consensus 104 ItlP 107 (238)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 11
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.82 E-value=5.8e-20 Score=139.86 Aligned_cols=81 Identities=35% Similarity=0.564 Sum_probs=72.6
Q ss_pred cceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec------c------eEeeEEEEEEECCCCCccCCe
Q 026451 26 PSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD------N------RYIMRFEQMFPLPPNSDMDKI 93 (238)
Q Consensus 26 P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e------~------~~~r~F~r~~~LP~~vD~~~I 93 (238)
|++||+++++.|+|.++||||++++|+|.+. ++.|+|+|++.... + +..+.|.|.|.|| ++|.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYK-DGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 4799999999999999999999999999999 99999999886421 1 2335899999998 7999999
Q ss_pred eEEEeCCEEEEEEeC
Q 026451 94 SGKFDGELLYVTVPK 108 (238)
Q Consensus 94 ~A~~~dGvL~ItlPK 108 (238)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 12
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.81 E-value=2.1e-19 Score=138.13 Aligned_cols=85 Identities=35% Similarity=0.626 Sum_probs=70.5
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEee-e-cce------EeeEEEEEEECCCCCccCCeeEEEeCC
Q 026451 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLT-S-DNR------YIMRFEQMFPLPPNSDMDKISGKFDGE 100 (238)
Q Consensus 29 di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~-~-e~~------~~r~F~r~~~LP~~vD~~~I~A~~~dG 100 (238)
||.+++++|.|.++||||.+++|+|++. ++.|+|+|.+.. . ... ..+.|.|+|.||+++|.++|+|+|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVD-DNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEE-TTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEe-cCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 7999999999999999999999999999 999999998882 1 111 225899999999999999999999999
Q ss_pred EEEEEEeCcCCccC
Q 026451 101 LLYVTVPKRAKEES 114 (238)
Q Consensus 101 vL~ItlPK~~~~~~ 114 (238)
+|+|++||....+.
T Consensus 80 vL~I~~pk~~~~~~ 93 (102)
T PF00011_consen 80 VLTITIPKKEEEED 93 (102)
T ss_dssp EEEEEEEBSSSCTT
T ss_pred EEEEEEEccccccC
Confidence 99999999977654
No 13
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.81 E-value=2.2e-19 Score=136.81 Aligned_cols=80 Identities=16% Similarity=0.383 Sum_probs=70.8
Q ss_pred cceeEEEcC-CeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec---c------eEeeEEEEEEECCCCCccCCeeE
Q 026451 26 PSSGWTEDS-NGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD---N------RYIMRFEQMFPLPPNSDMDKISG 95 (238)
Q Consensus 26 P~~di~e~~-d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e---~------~~~r~F~r~~~LP~~vD~~~I~A 95 (238)
|++||++++ +.|+|.++||||++++|+|.+. ++.|+|+|++.... . +..+.|.|+|.||.++|.+ +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE-NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 789999975 9999999999999999999999 99999999886542 1 1236999999999999885 79
Q ss_pred EEeCCEEEEEEeC
Q 026451 96 KFDGELLYVTVPK 108 (238)
Q Consensus 96 ~~~dGvL~ItlPK 108 (238)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999986
No 14
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.79 E-value=6.7e-19 Score=133.29 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=68.4
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEE-eCCEEEEEE
Q 026451 31 TEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKF-DGELLYVTV 106 (238)
Q Consensus 31 ~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~-~dGvL~Itl 106 (238)
-+++++|.|.++||||+|++|+|++. ++.|+|+|++... .+.+.+.|.|+|.||.+||.++|+|+| +||||+|+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVF-EGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 46789999999999999999999999 9999999987543 334457999999999999999999998 799999998
Q ss_pred e
Q 026451 107 P 107 (238)
Q Consensus 107 P 107 (238)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.78 E-value=8.5e-19 Score=131.37 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=67.5
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec---ceEeeEEEEEEECCCCCccCCeeEEEeC-CEEEEEEeC
Q 026451 34 SNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD---NRYIMRFEQMFPLPPNSDMDKISGKFDG-ELLYVTVPK 108 (238)
Q Consensus 34 ~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e---~~~~r~F~r~~~LP~~vD~~~I~A~~~d-GvL~ItlPK 108 (238)
.+.|.|.++||||++++|+|++. ++.|+|+|++.... +...+.|.|+|.||.++|.++|+|+|.| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~-~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVS-DNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEE-CCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 46999999999999999999999 99999999887652 3445799999999999999999999997 999999997
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.78 E-value=8.8e-19 Score=133.33 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=67.9
Q ss_pred EcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec----c---eEeeEEEEEEECCCCCccCCeeEEE-eCCEEE
Q 026451 32 EDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD----N---RYIMRFEQMFPLPPNSDMDKISGKF-DGELLY 103 (238)
Q Consensus 32 e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e----~---~~~r~F~r~~~LP~~vD~~~I~A~~-~dGvL~ 103 (238)
+..+.|.|.++||||+|++|+|++. ++.|+|+|++.... . +..+.|.|+|.||.+||.+.|+|+| +||||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVD-GRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEE-CCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence 5678999999999999999999999 99999999875431 2 2347999999999999999999999 899999
Q ss_pred EEEeC
Q 026451 104 VTVPK 108 (238)
Q Consensus 104 ItlPK 108 (238)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99996
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.75 E-value=5.8e-18 Score=124.99 Aligned_cols=79 Identities=35% Similarity=0.586 Sum_probs=71.7
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec---------ceEeeEEEEEEECCCCCccCCeeEEEeC
Q 026451 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD---------NRYIMRFEQMFPLPPNSDMDKISGKFDG 99 (238)
Q Consensus 29 di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e---------~~~~r~F~r~~~LP~~vD~~~I~A~~~d 99 (238)
++.++++.|+|.++||||++++|+|++. ++.|.|+|++.... ....+.|.|+|.||.++|.+.++|.|.|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~-~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 5788999999999999999999999999 99999999887542 1234699999999999999999999999
Q ss_pred CEEEEEEeC
Q 026451 100 ELLYVTVPK 108 (238)
Q Consensus 100 GvL~ItlPK 108 (238)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.74 E-value=1.2e-17 Score=127.57 Aligned_cols=74 Identities=27% Similarity=0.417 Sum_probs=66.3
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec------ceEeeEEEEEEECCCCCccCCeeEEEeC-CEEEEE
Q 026451 33 DSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD------NRYIMRFEQMFPLPPNSDMDKISGKFDG-ELLYVT 105 (238)
Q Consensus 33 ~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e------~~~~r~F~r~~~LP~~vD~~~I~A~~~d-GvL~It 105 (238)
+++.|+|.++||||++++|+|+|. ++.|+|+|++...+ .+..+.|.|+|.||.+||.++|+|+|+| |+|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~-~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVK-DGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 688999999999999999999999 99999999886431 2455799999999999999999999995 599999
Q ss_pred Ee
Q 026451 106 VP 107 (238)
Q Consensus 106 lP 107 (238)
.|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 87
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.73 E-value=1.7e-17 Score=127.69 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=72.4
Q ss_pred cceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEEe-CCE
Q 026451 26 PSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKFD-GEL 101 (238)
Q Consensus 26 P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~~-dGv 101 (238)
|.--+..+++.|.|.+|+.||+||||+|++. ++.|+|+|++... .+.+.+.|.|+|.||++||.+.|+|.|. ||+
T Consensus 6 ~~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~-~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGv 84 (91)
T cd06480 6 PRNPPPNSSEPWKVCVNVHSFKPEELTVKTK-DGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGL 84 (91)
T ss_pred ccCCCCCCCCcEEEEEEeCCCCHHHcEEEEE-CCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCe
Confidence 3444567889999999999999999999999 9999999987654 2455689999999999999999999999 999
Q ss_pred EEEEEeC
Q 026451 102 LYVTVPK 108 (238)
Q Consensus 102 L~ItlPK 108 (238)
|+|.+|.
T Consensus 85 L~IeaP~ 91 (91)
T cd06480 85 LIIEAPQ 91 (91)
T ss_pred EEEEcCC
Confidence 9999983
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.9e-16 Score=132.88 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=79.2
Q ss_pred cceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCCeeEEEe-CCE
Q 026451 26 PSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDKISGKFD-GEL 101 (238)
Q Consensus 26 P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~I~A~~~-dGv 101 (238)
...++..++++|.|.+||..|+|++|+|++. |+.|.|+|+.... ++...|+|.|+|.||++||++.|+++|+ ||+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~-~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTD-DNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGV 141 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeC-CCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCce
Confidence 3567889999999999999999999999999 9999999976554 4667789999999999999999999998 999
Q ss_pred EEEEEeCcCCccC
Q 026451 102 LYVTVPKRAKEES 114 (238)
Q Consensus 102 L~ItlPK~~~~~~ 114 (238)
|+|.+||.+..+.
T Consensus 142 LtI~ap~~~~~~~ 154 (173)
T KOG3591|consen 142 LTIEAPKPPPKQD 154 (173)
T ss_pred EEEEccCCCCcCc
Confidence 9999999987654
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1e-13 Score=120.03 Aligned_cols=95 Identities=32% Similarity=0.458 Sum_probs=82.1
Q ss_pred CCccccccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec--------c----eEeeEEEEEEECCC
Q 026451 19 PIVKEFVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD--------N----RYIMRFEQMFPLPP 86 (238)
Q Consensus 19 ~~~~~~~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e--------~----~~~r~F~r~~~LP~ 86 (238)
.....+.+++++.+..+.|.+.++|||+++++|+|.+.++++|+|+|++.... + +..+.|.++|.||+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 45566778899999999999999999999999999999444899999876542 1 12358999999999
Q ss_pred CCccCCeeEEEeCCEEEEEEeCcCCcc
Q 026451 87 NSDMDKISGKFDGELLYVTVPKRAKEE 113 (238)
Q Consensus 87 ~vD~~~I~A~~~dGvL~ItlPK~~~~~ 113 (238)
+++.+.|+|.|.||||+|++||..+..
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~~~~ 184 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLEPLL 184 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEecccccc
Confidence 999999999999999999999997753
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.45 E-value=9e-13 Score=93.30 Aligned_cols=78 Identities=32% Similarity=0.588 Sum_probs=69.9
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec--ceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD--NRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 30 i~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e--~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
|.++++.|.|.++|||+.+++|.|.+. ++.|.|+|...... ....+.|.+.|.||..+|++.++|+|.+|+|.|.+|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 578899999999999999999999999 99999999876542 222358999999999999999999999999999999
Q ss_pred C
Q 026451 108 K 108 (238)
Q Consensus 108 K 108 (238)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.21 E-value=9.3e-11 Score=85.74 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=65.6
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEeCc
Q 026451 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPKR 109 (238)
Q Consensus 30 i~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~ 109 (238)
|.++++.++|.+++||+++++++|.+. ++.|.|++ ..|.+.+.||..+|+++.++++.+|.|.|+|||.
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~-~~~l~i~~----------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCS-DLYLKVNF----------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEe-cCEEEEcC----------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 578999999999999999999999999 89999987 1588999999999999999999999999999997
Q ss_pred CC
Q 026451 110 AK 111 (238)
Q Consensus 110 ~~ 111 (238)
.+
T Consensus 70 ~~ 71 (78)
T cd06469 70 EP 71 (78)
T ss_pred CC
Confidence 54
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.86 E-value=2.1e-08 Score=72.60 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=67.5
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEeCc
Q 026451 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPKR 109 (238)
Q Consensus 30 i~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~ 109 (238)
|.++++.+.|.+.+||..++++.|.+. ++.|+|++.... ...|...+.|+..+|++..++++.+|.|.|+|+|.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~-~~~l~i~~~~~~-----~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~ 74 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFT-PKSLTVSVKGGG-----GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKK 74 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEe-cCEEEEEeeCCC-----CCceEEeeEccCccchhhcEEEEeCCEEEEEEEEC
Confidence 578899999999999999999999999 899999986531 13678888999999999999999999999999998
Q ss_pred CC
Q 026451 110 AK 111 (238)
Q Consensus 110 ~~ 111 (238)
.+
T Consensus 75 ~~ 76 (84)
T cd06463 75 EP 76 (84)
T ss_pred CC
Confidence 65
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.68 E-value=1.5e-07 Score=80.49 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=63.7
Q ss_pred ccccceeEEEcCC-eEEEEEEcCCCCCCC-eEEEEE-eCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeC
Q 026451 23 EFVPSSGWTEDSN-GHYLLVDLPDFKKEQ-VKLQVD-SSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDG 99 (238)
Q Consensus 23 ~~~P~~di~e~~d-~~~l~vdLPGf~~ed-I~V~V~-~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~d 99 (238)
...+.+++.+.+| .+.|.++|||++.++ |+|.+. ..+.|+|+ .. ..|.+++.||.. +++.++++|.|
T Consensus 89 ~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~~-------~~~~krv~L~~~-~~e~~~~t~nN 158 (177)
T PF05455_consen 89 EESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--VG-------EKYLKRVALPWP-DPEITSATFNN 158 (177)
T ss_pred cceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--cC-------CceEeeEecCCC-ccceeeEEEeC
Confidence 3467899999888 588999999999988 999998 34455553 21 247789999966 68889999999
Q ss_pred CEEEEEEeCcCC
Q 026451 100 ELLYVTVPKRAK 111 (238)
Q Consensus 100 GvL~ItlPK~~~ 111 (238)
|||.|.|-+...
T Consensus 159 gILEIri~~~~~ 170 (177)
T PF05455_consen 159 GILEIRIRRTEE 170 (177)
T ss_pred ceEEEEEeecCC
Confidence 999999988754
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.58 E-value=3e-07 Score=67.78 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=67.8
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEeC
Q 026451 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPK 108 (238)
Q Consensus 29 di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK 108 (238)
||+++++.+.|.+.+||+.++++.|.+. ++.|.|++.... ...|...+.|+..++++..++++.+|.|.|+|.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~-~~~l~i~~~~~~-----~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFN-EQSLSVSIILPG-----GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe-cCEEEEEEECCC-----CCeEEEecccccccCchhcEEEEeCeEEEEEEEc
Confidence 6899999999999999999999999999 899999876431 1257788899999999999999999999999999
Q ss_pred cCC
Q 026451 109 RAK 111 (238)
Q Consensus 109 ~~~ 111 (238)
..+
T Consensus 75 ~~~ 77 (84)
T cd06466 75 AEP 77 (84)
T ss_pred CCC
Confidence 754
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.46 E-value=3.7e-06 Score=60.40 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=65.4
Q ss_pred cceeEEEcCCeEEEEEEcCCC--CCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEE
Q 026451 26 PSSGWTEDSNGHYLLVDLPDF--KKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLY 103 (238)
Q Consensus 26 P~~di~e~~d~~~l~vdLPGf--~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ 103 (238)
|+|+|.++++...|.+.+++. +++++.|.+. ++.|.|+...... ..|...+.|...++++..+.++.++.|.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~-~~~l~v~~~~~~~-----~~~~~~~~L~~~I~~~~s~~~~~~~~i~ 74 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFT-DTSLSVSIKSGDG-----KEYLLEGELFGEIDPDESTWKVKDNKIE 74 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEE-TTEEEEEEEETTS-----CEEEEEEEBSS-BECCCEEEEEETTEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEE-eeEEEEEEEccCC-----ceEEEEEEEeeeEcchhcEEEEECCEEE
Confidence 789999999999999999665 5999999999 9999998654332 2677888899999999999999999999
Q ss_pred EEEeC
Q 026451 104 VTVPK 108 (238)
Q Consensus 104 ItlPK 108 (238)
|+|.|
T Consensus 75 i~L~K 79 (79)
T PF04969_consen 75 ITLKK 79 (79)
T ss_dssp EEEEB
T ss_pred EEEEC
Confidence 99986
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.01 E-value=8.9e-05 Score=57.84 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=67.3
Q ss_pred cceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEE
Q 026451 26 PSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVT 105 (238)
Q Consensus 26 P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~It 105 (238)
|+++|+++.+..+|.+.+||. +++.|.+. ...|.|++..... + ..|...+.|...|+++.-+.++.++.|.|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~-~~~l~v~~~~~~~-~---~~y~~~~~L~~~I~pe~s~~~v~~~kveI~ 73 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLE-PTSLSFKAKGGGG-G---KKYEFDLEFYKEIDPEESKYKVTGRQIEFV 73 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEE-CCEEEEEEEcCCC-C---eeEEEEeEhhhhccccccEEEecCCeEEEE
Confidence 689999999999999999998 88999999 9999998854221 1 246777799999999999999999999999
Q ss_pred EeCcC
Q 026451 106 VPKRA 110 (238)
Q Consensus 106 lPK~~ 110 (238)
|.|..
T Consensus 74 L~K~~ 78 (108)
T cd06465 74 LRKKE 78 (108)
T ss_pred EEECC
Confidence 99976
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.81 E-value=8.9e-05 Score=67.54 Aligned_cols=65 Identities=26% Similarity=0.450 Sum_probs=58.0
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEe--CCEEEEEEe
Q 026451 34 SNGHYLLVDLPDF-KKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFD--GELLYVTVP 107 (238)
Q Consensus 34 ~d~~~l~vdLPGf-~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~--dGvL~ItlP 107 (238)
.+.+.|.|.|||+ +..+|.|.|. +..|.|..... .|...+.||..||.+..+|+|. .++|+||||
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~-~~~l~l~~~~~--------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVS-EDRLSLSSPKP--------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEe-CCEEEEEeCCC--------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 5788899999999 8899999999 99999976542 5778899999999999999997 599999998
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.73 E-value=0.00026 Score=52.23 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=62.3
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeC-CEEEEE
Q 026451 28 SGWTEDSNGHYLLVDLP-DFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDG-ELLYVT 105 (238)
Q Consensus 28 ~di~e~~d~~~l~vdLP-Gf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~d-GvL~It 105 (238)
|.|.++++...|.+.+| ++.+++|.|.+. .+.|.|+... . .+.-...|...+|++....++.+ ..|.|+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~-~~~l~v~~~~----~----~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~ 71 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEIT-PKHLKVGVKG----G----EPLLDGELYAKVKVDESTWTLEDGKLLEIT 71 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEE-cCEEEEEECC----C----CceEcCcccCceeEcCCEEEEeCCCEEEEE
Confidence 57999999999999997 799999999999 8999998642 1 12223368889999998888999 999999
Q ss_pred EeCcCC
Q 026451 106 VPKRAK 111 (238)
Q Consensus 106 lPK~~~ 111 (238)
|+|..+
T Consensus 72 L~K~~~ 77 (85)
T cd06467 72 LEKRNE 77 (85)
T ss_pred EEECCC
Confidence 999854
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.70 E-value=0.00032 Score=52.15 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=64.6
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEeC
Q 026451 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPK 108 (238)
Q Consensus 29 di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK 108 (238)
||+++++...|.+.++|+.++++.|.+. ++.|.|++.... + ..|.-.+.|...+++++-+.+...+-+.|+|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~-~~~l~~~~~~~~--~---~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 74 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFE-KRELSATVKLPS--G---NDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe-CCEEEEEEECCC--C---CcEEEeeecCceecchhcEEEEeCcEEEEEEEc
Confidence 6899999999999999999999999999 899999876422 1 136667789999999987777888889999999
Q ss_pred cC
Q 026451 109 RA 110 (238)
Q Consensus 109 ~~ 110 (238)
..
T Consensus 75 ~~ 76 (84)
T cd06489 75 TE 76 (84)
T ss_pred CC
Confidence 74
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.59 E-value=0.00085 Score=50.55 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=66.7
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEE
Q 026451 27 SSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTV 106 (238)
Q Consensus 27 ~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~Itl 106 (238)
++||+++++...|.+.+.|..++++.|.+. .+.|+|+..-.. ...|...+.|-..+|++..+.+....-+.|+|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~-~~~l~v~~~~~~-----~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L 75 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEAN-STVLTIHIVFEG-----NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKL 75 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEec-CCEEEEEEECCC-----CceEEEEeeccceEChhHcEEEecCcEEEEEE
Confidence 589999999999999999999999999998 888888654322 12477778999999999977777789999999
Q ss_pred eCcCC
Q 026451 107 PKRAK 111 (238)
Q Consensus 107 PK~~~ 111 (238)
.|..+
T Consensus 76 ~K~~~ 80 (87)
T cd06488 76 RKAEP 80 (87)
T ss_pred EeCCC
Confidence 99854
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.53 E-value=0.0013 Score=49.33 Aligned_cols=79 Identities=14% Similarity=0.250 Sum_probs=65.3
Q ss_pred ceeEEEcCCeEEEEEEcCCCCC---CCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEE-CCCCCccCCeeEEEeCCEE
Q 026451 27 SSGWTEDSNGHYLLVDLPDFKK---EQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFP-LPPNSDMDKISGKFDGELL 102 (238)
Q Consensus 27 ~~di~e~~d~~~l~vdLPGf~~---edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~-LP~~vD~~~I~A~~~dGvL 102 (238)
.|+|.++++...|.+.+|+..+ +++.|.+. .+.|.|++... ++ ..|.-.+. |-..++++..+.++.++-+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~-~~~l~v~~~~~--~~---~~~~~~~~~L~~~I~~e~s~~~~~~~ki 76 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFT-ERSFELKVHDL--NG---KNYRFTINRLLKKIDPEKSSFKVKTDRI 76 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEec-CCEEEEEEECC--CC---cEEEEEehHhhCccCccccEEEEeCCEE
Confidence 5899999999999999999987 99999999 89999987321 11 13555554 8899999998888889999
Q ss_pred EEEEeCcCC
Q 026451 103 YVTVPKRAK 111 (238)
Q Consensus 103 ~ItlPK~~~ 111 (238)
.|+|.|..+
T Consensus 77 ~i~L~K~~~ 85 (92)
T cd06468 77 VITLAKKKE 85 (92)
T ss_pred EEEEEeCCC
Confidence 999999864
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.46 E-value=0.0015 Score=48.95 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=60.7
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCC-EEEEE
Q 026451 28 SGWTEDSNGHYLLVDLP-DFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGE-LLYVT 105 (238)
Q Consensus 28 ~di~e~~d~~~l~vdLP-Gf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dG-vL~It 105 (238)
|+|+++.+...|.+.+| |+.+++++|++. .+.|.|... . +. .| ..-.|...++++.-+-++.+| .|.|+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~-~~~l~v~~~--~-~~----~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~ 71 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFL-PDHISIALK--D-QA----PL-LEGKLYSSIDHESSTWIIKENKSLEVS 71 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEe-cCEEEEEeC--C-CC----eE-EeCcccCcccccCcEEEEeCCCEEEEE
Confidence 67999999999999996 999999999999 899998652 1 11 12 234788999999988778766 79999
Q ss_pred EeCcCC
Q 026451 106 VPKRAK 111 (238)
Q Consensus 106 lPK~~~ 111 (238)
|.|..+
T Consensus 72 L~K~~~ 77 (85)
T cd06493 72 LIKKDE 77 (85)
T ss_pred EEECCC
Confidence 999754
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.02 E-value=0.0069 Score=46.71 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=62.5
Q ss_pred ccceeEEEcCCeEEEEEEcC-CCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCC-EE
Q 026451 25 VPSSGWTEDSNGHYLLVDLP-DFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGE-LL 102 (238)
Q Consensus 25 ~P~~di~e~~d~~~l~vdLP-Gf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dG-vL 102 (238)
.+.|.|+++.+...|.+.|| |.++.++.|.+. .+.|.|.-.. .. -+.. .|...|+++.-.-++++| +|
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~-~~~l~V~~~g-----~~--~l~G--~L~~~I~~destWtled~k~l 74 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLG-SRDISLAVKG-----QE--VLKG--KLFDSVVADECTWTLEDRKLI 74 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEE-cCEEEEEECC-----EE--EEcC--cccCccCcccCEEEEECCcEE
Confidence 47899999999999999997 899999999999 8999987411 10 1111 688899999988999876 58
Q ss_pred EEEEeCcCC
Q 026451 103 YVTVPKRAK 111 (238)
Q Consensus 103 ~ItlPK~~~ 111 (238)
.|.|.|...
T Consensus 75 ~I~L~K~~~ 83 (93)
T cd06494 75 RIVLTKSNR 83 (93)
T ss_pred EEEEEeCCC
Confidence 999999753
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.97 E-value=0.015 Score=45.88 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=62.4
Q ss_pred cceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEE
Q 026451 26 PSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVT 105 (238)
Q Consensus 26 P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~It 105 (238)
|.++|.+..+..+|++.||+ .++++|++. .+.|.++|... ++. .|.-.+.|-..+++++-+.+...--+.|.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~-~~~l~f~~~~~--~g~---~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~ 73 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFE-KSKLTFSCLNG--DNV---KIYNEIELYDRVDPNDSKHKRTDRSILCC 73 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEe-cCEEEEEEECC--CCc---EEEEEEEeecccCcccCeEEeCCceEEEE
Confidence 78999999999999999999 689999999 88999998332 221 35567788888999986655556678888
Q ss_pred EeCcCC
Q 026451 106 VPKRAK 111 (238)
Q Consensus 106 lPK~~~ 111 (238)
|.|...
T Consensus 74 L~K~~~ 79 (106)
T cd00237 74 LRKGKE 79 (106)
T ss_pred EEeCCC
Confidence 998854
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.21 E-value=0.027 Score=52.66 Aligned_cols=81 Identities=11% Similarity=-0.013 Sum_probs=67.1
Q ss_pred ccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEE
Q 026451 25 VPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYV 104 (238)
Q Consensus 25 ~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~I 104 (238)
.+++||+++++...|.|.+.|+.++++.|.+. .+.|.|+-.... + ..|...+.|-..|+++..+.++..--+.|
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~-~~~l~v~~~~~~--~---~~y~~~~~L~~~I~p~~s~~~v~~~Kiei 229 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFG-EQILSVVIEVPG--E---DAYHLQPRLFGKIIPDKCKYEVLSTKIEI 229 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEee-cCEEEEEEecCC--C---cceeecccccccccccccEEEEecceEEE
Confidence 36899999999999999999999999999999 888988864322 2 13555678999999999887777779999
Q ss_pred EEeCcCC
Q 026451 105 TVPKRAK 111 (238)
Q Consensus 105 tlPK~~~ 111 (238)
+|.|..+
T Consensus 230 ~l~K~~~ 236 (356)
T PLN03088 230 RLAKAEP 236 (356)
T ss_pred EEecCCC
Confidence 9988753
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.38 E-value=0.29 Score=36.87 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=55.9
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCeEEEEE-eCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEe--CCEEEE
Q 026451 28 SGWTEDSNGHYLLVDLPDFKKEQVKLQVD-SSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFD--GELLYV 104 (238)
Q Consensus 28 ~di~e~~d~~~l~vdLPGf~~edI~V~V~-~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~--dGvL~I 104 (238)
+||+++++...|.+...+....+..|.+. ..+.|.|+-.-. + ..|...|.|-..++.+. +.++. -|-+.|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~---~---~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI 73 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG---D---KSYLLHLDLSNEVQWPC-EVRISTETGKIEL 73 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC---C---ceEEEeeeccccCCCCc-EEEEcccCceEEE
Confidence 58999999999999998655555454443 266788864332 1 14777778888888775 56665 789999
Q ss_pred EEeCcCC
Q 026451 105 TVPKRAK 111 (238)
Q Consensus 105 tlPK~~~ 111 (238)
+|.|..+
T Consensus 74 ~L~K~e~ 80 (87)
T cd06490 74 VLKKKEP 80 (87)
T ss_pred EEEcCCC
Confidence 9999754
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.15 E-value=0.24 Score=37.47 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=58.0
Q ss_pred eeEEEcCCeEEEEEEcC-C--CCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCC-EEE
Q 026451 28 SGWTEDSNGHYLLVDLP-D--FKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGE-LLY 103 (238)
Q Consensus 28 ~di~e~~d~~~l~vdLP-G--f~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dG-vL~ 103 (238)
|-|.++.+...|.+.|| + +++.+|+|++. ...|.|.-... ...-.=.|...|+.+.-.-++++| .|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~-~~~l~v~~~g~--------~~~i~G~L~~~V~~des~Wtled~~~l~ 71 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQ-RKHLKVGLKGQ--------PPIIDGELYNEVKVEESSWLIEDGKVVT 71 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEe-cCEEEEEECCC--------ceEEeCcccCcccccccEEEEeCCCEEE
Confidence 46788999999999996 3 89999999999 88888854211 111222677889999988889886 899
Q ss_pred EEEeCcCC
Q 026451 104 VTVPKRAK 111 (238)
Q Consensus 104 ItlPK~~~ 111 (238)
|+|-|...
T Consensus 72 i~L~K~~~ 79 (87)
T cd06492 72 VNLEKINK 79 (87)
T ss_pred EEEEECCC
Confidence 99998753
No 40
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.08 E-value=0.081 Score=45.85 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=63.4
Q ss_pred ccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEE
Q 026451 25 VPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYV 104 (238)
Q Consensus 25 ~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~I 104 (238)
.+++||+++.+...|.+-.+++.++++.|.+. .+.|.|.-+....+ .|.....|-..|.+++.+-+.----+.|
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s-~~~l~~~~~~~~g~-----~~~l~~~L~~~I~pe~~s~k~~stKVEI 76 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEIS-ENTLSIVIQLPSGS-----EYNLQLKLYHEIIPEKSSFKVFSTKVEI 76 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEee-cceEEEEEecCCch-----hhhhhHHhcccccccceeeEeeeeeEEE
Confidence 46899999999999999999999999999999 88888876554321 3444445777888888655555778999
Q ss_pred EEeCcC
Q 026451 105 TVPKRA 110 (238)
Q Consensus 105 tlPK~~ 110 (238)
+|+|..
T Consensus 77 ~L~K~~ 82 (196)
T KOG1309|consen 77 TLAKAE 82 (196)
T ss_pred Eecccc
Confidence 999953
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.76 E-value=0.39 Score=37.66 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=61.0
Q ss_pred ccceeEEEcCCeEEEEEEcC-C-CCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCC-E
Q 026451 25 VPSSGWTEDSNGHYLLVDLP-D-FKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGE-L 101 (238)
Q Consensus 25 ~P~~di~e~~d~~~l~vdLP-G-f~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dG-v 101 (238)
.+.|.|.++-+...|.+.|| | .+..+|.|.+. ...|.|.-.....+.-+ +.. .|+..|+.+.-.-+++|| +
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~-~~~l~v~~~~~~~~~~~---i~G--~L~~~V~~des~Wtled~~~ 77 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQ-SSSIRVSVRDGGGEKVL---MEG--EFTHKINTENSLWSLEPGKC 77 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEE-cCEEEEEEecCCCCceE---EeC--cccCcccCccceEEEeCCCE
Confidence 46799999999999999999 5 46889999999 88888875321100011 122 678889999988999985 5
Q ss_pred EEEEEeCcC
Q 026451 102 LYVTVPKRA 110 (238)
Q Consensus 102 L~ItlPK~~ 110 (238)
|.|+|-|..
T Consensus 78 l~I~L~K~~ 86 (102)
T cd06495 78 VLLSLSKCS 86 (102)
T ss_pred EEEEEEECC
Confidence 899999973
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=76.01 E-value=10 Score=32.81 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=60.9
Q ss_pred cccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEE
Q 026451 24 FVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLY 103 (238)
Q Consensus 24 ~~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ 103 (238)
..|.+-|.+..+..+|++.|+.- .+..|.+. ..+|+++|....+. ..|..++.|-..||+++.+-+-. +-+.
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e-~~~l~fs~k~~~d~----~~~~~~ief~~eIdpe~sk~k~~-~r~i 77 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLE-PSKLTFSCKSGADN----HKYENEIEFFDEIDPEKSKHKRT-SRSI 77 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccC--ccceeecc-ccEEEEEeccCCCc----eeeEEeeehhhhcCHhhcccccc-ceEE
Confidence 45789999999999999999865 45667777 77999999775321 25677889989999999776666 7677
Q ss_pred EEEeCcCC
Q 026451 104 VTVPKRAK 111 (238)
Q Consensus 104 ItlPK~~~ 111 (238)
..++++..
T Consensus 78 f~i~~K~e 85 (180)
T KOG3158|consen 78 FCILRKKE 85 (180)
T ss_pred EEEEEccc
Confidence 77766543
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=75.15 E-value=5.8 Score=30.12 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=30.0
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCcCC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAK 111 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~~~ 111 (238)
.|.-...|| +++.+.|+.++.||.|+|..-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 678888998 8899999999999999999987644
No 44
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=74.62 E-value=21 Score=30.94 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=63.0
Q ss_pred CCCCccccccceeEEEcCCeEEEEEEcC-CC-CCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCee
Q 026451 17 NNPIVKEFVPSSGWTEDSNGHYLLVDLP-DF-KKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKIS 94 (238)
Q Consensus 17 ~~~~~~~~~P~~di~e~~d~~~l~vdLP-Gf-~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~ 94 (238)
++.....-.+.|.|.++=....|.|.|| |+ +..+|.|.+. ...|.|.-.... -...=.|...++.+.-.
T Consensus 10 p~~~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq-~~hI~V~~kg~~--------~ildG~L~~~vk~des~ 80 (179)
T KOG2265|consen 10 PNSGNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQ-SKHIKVGLKGQP--------PILDGELSHSVKVDEST 80 (179)
T ss_pred CcccCCccccceeeeeehhheEEEeecCCCCcccceEEEEee-eeEEEEecCCCC--------ceecCccccccccccce
Confidence 3344445568899999999999998886 88 8899999999 888887532211 11112566778999989
Q ss_pred EEEeCCEEEEEEeCcCC
Q 026451 95 GKFDGELLYVTVPKRAK 111 (238)
Q Consensus 95 A~~~dGvL~ItlPK~~~ 111 (238)
.++++|.+.|.+-++..
T Consensus 81 WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 81 WTIEDGKMIVILLKKSN 97 (179)
T ss_pred EEecCCEEEEEEeeccc
Confidence 99999988777766644
No 45
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=70.96 E-value=8.9 Score=28.43 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPK 108 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK 108 (238)
.|.-.+.|| +++.+.|+.++.++.|+|..-+
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~ 38 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKH 38 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 688899998 8999999999999999999854
No 46
>PF14913 DPCD: DPCD protein family
Probab=70.21 E-value=30 Score=30.32 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=58.5
Q ss_pred cccceeEEEcCCeEEEEEEcCCCCCCCeEEEEE-eCCeEEEEEEEeeecceEeeEEEEEEECCCC------CccCCeeEE
Q 026451 24 FVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVD-SSGNITVSGEMLTSDNRYIMRFEQMFPLPPN------SDMDKISGK 96 (238)
Q Consensus 24 ~~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~-~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~------vD~~~I~A~ 96 (238)
..|.+--..+..+|+-.|-==-+.++-.+|+|+ +++.|+|+-..+ .|-++|.+|+- .+.+.++..
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtNK--------KYyKk~~IPDl~R~~l~l~~~~ls~~ 156 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTNK--------KYYKKFSIPDLDRCGLPLEQSALSFA 156 (194)
T ss_pred CCCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECcCc--------cceeEecCCcHHhhCCCcchhhceee
Confidence 446676778888999887554578888999999 445788864331 47788889862 366777777
Q ss_pred EeCCEEEEEEeCcC
Q 026451 97 FDGELLYVTVPKRA 110 (238)
Q Consensus 97 ~~dGvL~ItlPK~~ 110 (238)
..|..|.|+..|..
T Consensus 157 h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 157 HQNNTLIISYKKPK 170 (194)
T ss_pred eecCeEEEEecCcH
Confidence 78999999987753
No 47
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=69.73 E-value=3.6 Score=29.71 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHHhhhhcC
Q 026451 211 IIITAVLAFSLGVLLSRKFG 230 (238)
Q Consensus 211 ~~~~~v~~~~l~~~~~~~~~ 230 (238)
|+|.|+|.|.||||.-+.+.
T Consensus 10 i~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 10 IILCALIFFPLGYLARRWLP 29 (62)
T ss_pred HHHHHHHHHhHHHHHHHHhH
Confidence 46799999999999877553
No 48
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=67.51 E-value=3.7 Score=38.25 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=65.9
Q ss_pred cccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEE
Q 026451 24 FVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLY 103 (238)
Q Consensus 24 ~~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ 103 (238)
+.-.||+.++.+...|-+.-|-++.++|++-+. ++.|.|+-.... .+. -|....+|-..|+++..+-++---++.
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e-~NTL~I~~q~~~--~~~--~~~~~~~Ly~ev~P~~~s~k~fsK~~e 249 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLE-GNTLSISYQPRR--LRL--WNDITISLYKEVYPDIRSIKSFSKRVE 249 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeec-CCcceeeeeccc--cch--HHHhhhhhhhhcCcchhhhhhcchhhe
Confidence 445788999999999999999999999999999 999999865533 222 356677888999999877665568888
Q ss_pred EEEeCcCC
Q 026451 104 VTVPKRAK 111 (238)
Q Consensus 104 ItlPK~~~ 111 (238)
|+|-|...
T Consensus 250 ~~l~KV~~ 257 (368)
T COG5091 250 VHLRKVEM 257 (368)
T ss_pred ehhhhhhh
Confidence 99888754
No 49
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=65.09 E-value=14 Score=27.45 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=29.6
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCcC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRA 110 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~~ 110 (238)
.|.-.+.|| +++.+.|+..++++.|+|+.-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 688899999 799999999999999999987754
No 50
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=64.31 E-value=5.6 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=19.5
Q ss_pred CchhhHHHHHHHHHHhhhhc-----CCCCCCC
Q 026451 210 GIIITAVLAFSLGVLLSRKF-----GSADHID 236 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~~~-----~~~~~~~ 236 (238)
.|||+.++.+.+|||++++. ..|..|+
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~~NPpin 33 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLKENPPIN 33 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 36778888889999998753 4555554
No 51
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=64.30 E-value=30 Score=31.88 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=67.5
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEE
Q 026451 27 SSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTV 106 (238)
Q Consensus 27 ~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~Itl 106 (238)
+.||.+++...+|.|..-|.-|+.-.|..+ ...|.|.-.... + -..|...+.|=.-|+++.-++.+-.--+.|+|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean-~~~l~V~ivf~~--g--na~fd~d~kLwgvvnve~s~v~m~~tkVEIsl 290 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEAN-GTTLHVSIVFGF--G--NASFDLDYKLWGVVNVEESSVVMGETKVEISL 290 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeC-CeEEEEEEEecC--C--CceeeccceeeeeechhhceEEeecceEEEEE
Confidence 689999999999999999999998888887 777777644422 1 13788888888889999988888888999999
Q ss_pred eCcCCcc
Q 026451 107 PKRAKEE 113 (238)
Q Consensus 107 PK~~~~~ 113 (238)
+|..+-.
T Consensus 291 ~k~ep~s 297 (320)
T KOG1667|consen 291 KKAEPGS 297 (320)
T ss_pred eccCCCC
Confidence 9987643
No 52
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=64.26 E-value=15 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=29.9
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCcCC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAK 111 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~~~ 111 (238)
.|.-.+.|| +++.+.|+..++++.|+|+..+...
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccc
Confidence 688899998 6899999999999999999887654
No 53
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=64.15 E-value=39 Score=27.07 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=46.8
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeec----ceEe---eEEEEEEECCCCCccCCeeEEEeCC
Q 026451 28 SGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD----NRYI---MRFEQMFPLPPNSDMDKISGKFDGE 100 (238)
Q Consensus 28 ~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e----~~~~---r~F~r~~~LP~~vD~~~I~A~~~dG 100 (238)
+.|.. .+...+.+.. ..+.++++.+ ++.|.|+......- +.+. ..-.-.+.||.++..++|.....+|
T Consensus 68 V~I~~-~~~~~i~v~~---~~k~~~~~~~-~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~~G 142 (166)
T PF13349_consen 68 VEIKP-SDDDKIKVEY---NGKKPEISVE-GGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTSSG 142 (166)
T ss_pred EEEEE-cCCccEEEEE---cCcEEEEEEc-CCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEeccc
Confidence 33444 3335555555 2126888888 99999988722211 1111 1345678899998888999888889
Q ss_pred EEEEE
Q 026451 101 LLYVT 105 (238)
Q Consensus 101 vL~It 105 (238)
-++|.
T Consensus 143 ~i~i~ 147 (166)
T PF13349_consen 143 DITIE 147 (166)
T ss_pred cEEEE
Confidence 88875
No 54
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=62.59 E-value=19 Score=26.91 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCc
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKR 109 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~ 109 (238)
.|.-.+.|| +++.+.|+.+++++.|.|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 788999998 88999999999999999999877
No 55
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=61.65 E-value=15 Score=26.82 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCcC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRA 110 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~~ 110 (238)
.|.-.+.|| ++..+.|+.+++++.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEee
Confidence 789999999 599999999999999999987654
No 56
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=60.97 E-value=18 Score=27.01 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=28.4
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCc
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKR 109 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~ 109 (238)
.|.-.+.|| +++++.|..++.+|.|+|..-|.
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 688889998 88999999999999999987653
No 57
>PRK10743 heat shock protein IbpA; Provisional
Probab=59.33 E-value=19 Score=29.50 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCcC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRA 110 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~~ 110 (238)
.|.-...|| +++.+.|..++++|+|+|..-+..
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 577888998 899999999999999999986543
No 58
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=55.45 E-value=25 Score=26.35 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=27.2
Q ss_pred eEEEEEEcC-CCCCCCeEEEEEeCCeEEEEEE
Q 026451 36 GHYLLVDLP-DFKKEQVKLQVDSSGNITVSGE 66 (238)
Q Consensus 36 ~~~l~vdLP-Gf~~edI~V~V~~~~~L~I~Ge 66 (238)
.|.=.+.|| ++..+.|+-.+..+|.|+|++.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 888889999 8999999999733999999874
No 59
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=55.36 E-value=8.4 Score=29.11 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=17.4
Q ss_pred HHHHHhcc--CchhhHHHHHHHHHHhhhh
Q 026451 202 MKILRRNK--GIIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 202 ~~~~~~~~--~~~~~~v~~~~l~~~~~~~ 228 (238)
-..++.|. -|-+.+.+.|.||+|++|+
T Consensus 66 ~~~V~e~P~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 66 EDYVRENPWQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHHhCC
Confidence 33344443 4566777888888888774
No 60
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=54.95 E-value=17 Score=31.13 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=31.5
Q ss_pred EEEcC-CCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECC
Q 026451 40 LVDLP-DFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLP 85 (238)
Q Consensus 40 ~vdLP-Gf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP 85 (238)
..-|| |++++.|.-.+..+|.|+|++.+...... +.|.+++.
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~----~er~ipI~ 162 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD----NERSIPIE 162 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCcCc----cceEEeEe
Confidence 36677 99999999999999999999977653211 45555543
No 61
>PHA03165 hypothetical protein; Provisional
Probab=54.07 E-value=8.7 Score=26.41 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhhhhcCCCC
Q 026451 214 TAVLAFSLGVLLSRKFGSAD 233 (238)
Q Consensus 214 ~~v~~~~l~~~~~~~~~~~~ 233 (238)
+.|+||+|.+||-+.|.||-
T Consensus 24 ilvvafvlaflvysdflsnl 43 (57)
T PHA03165 24 ILVVAFVLAFLVYSDFLSNL 43 (57)
T ss_pred hhHHHHHHHHHHHHHHHhcc
Confidence 45889999999999998873
No 62
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=54.05 E-value=8.5 Score=30.54 Aligned_cols=19 Identities=42% Similarity=0.765 Sum_probs=17.3
Q ss_pred CchhhHHHHHHHHHHhhhh
Q 026451 210 GIIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~~ 228 (238)
+|=++|++.|.||+|+|++
T Consensus 86 ~VGvaAaVGlllGlLlsRR 104 (104)
T COG4575 86 GVGVAAAVGLLLGLLLSRR 104 (104)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7888999999999999984
No 63
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=51.50 E-value=10 Score=25.43 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHHhhhhcCCCCCC
Q 026451 211 IIITAVLAFSLGVLLSRKFGSADHI 235 (238)
Q Consensus 211 ~~~~~v~~~~l~~~~~~~~~~~~~~ 235 (238)
=+++.+|||++|.+..+.-+-+|-.
T Consensus 3 k~mtSlla~GaG~aAy~~A~~n~m~ 27 (43)
T PF13056_consen 3 KTMTSLLAFGAGAAAYQMAQRNDMM 27 (43)
T ss_pred HHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3678999999999999876665543
No 64
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=51.28 E-value=27 Score=26.10 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=27.2
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPK 108 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK 108 (238)
.|.-.+.|| +++++.|..++.+|+|+|+.-+
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 688888886 6889999999999999999854
No 65
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=51.12 E-value=62 Score=27.84 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 44 PDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 44 PGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
|=.=|+.++|+++ ++.|+|+|.+ +...+.|.-+ .++..+++|-|.|+..
T Consensus 9 pI~IP~~V~v~i~-~~~v~VkGp~--------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 9 EIEIPEGVTVEIE-GLVVTVKGPK--------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cEEcCCCCEEEEE-CCEEEEECCC--------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 3334789999999 9999999877 3344444322 3455678888888854
No 66
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=49.64 E-value=31 Score=26.40 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=27.3
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEEeCCeEEEEE
Q 026451 35 NGHYLLVDLP-DFKKEQVKLQVDSSGNITVSG 65 (238)
Q Consensus 35 d~~~l~vdLP-Gf~~edI~V~V~~~~~L~I~G 65 (238)
..|.-.+.|| +++++.|+-.+..+|.|+|++
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5666789998 899999999999899999985
No 67
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=48.39 E-value=35 Score=28.27 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=28.1
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCc
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKR 109 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~ 109 (238)
.|.-...|| +++.+.|...+++|+|+|+.-+.
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 577888898 88999999999999999998754
No 68
>PF06553 BNIP3: BNIP3; InterPro: IPR010548 This family consists of several mammalian specific BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterised by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation [].; GO: 0043065 positive regulation of apoptosis, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 2KA1_B 2KA2_A 2J5D_A.
Probab=47.12 E-value=13 Score=32.60 Aligned_cols=19 Identities=16% Similarity=0.698 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHhhhhcC
Q 026451 212 IITAVLAFSLGVLLSRKFG 230 (238)
Q Consensus 212 ~~~~v~~~~l~~~~~~~~~ 230 (238)
+|.-+|+++||+|+++++.
T Consensus 172 llS~lL~~GlGiyIgkRl~ 190 (197)
T PF06553_consen 172 LLSHLLGLGLGIYIGKRLA 190 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccEEEEecccc
Confidence 4577899999999999875
No 69
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=47.06 E-value=85 Score=26.70 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=31.7
Q ss_pred CCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 48 KEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 48 ~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
|+.++|++. ++.|+|+|.+ +...+.|. |. .+...++++.|.|..+
T Consensus 7 P~~V~v~i~-~~~i~vkGp~--------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIE-GNIVTVKGPK--------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEe-CCEEEEECCC--------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 788999999 9999999877 23444332 33 3455678888888854
No 70
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=46.99 E-value=15 Score=26.11 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.1
Q ss_pred chhhHHHHHHHHHHhh
Q 026451 211 IIITAVLAFSLGVLLS 226 (238)
Q Consensus 211 ~~~~~v~~~~l~~~~~ 226 (238)
.+++|+|||||+|..+
T Consensus 5 lLf~aiLalsla~s~g 20 (59)
T PF03823_consen 5 LLFAAILALSLARSFG 20 (59)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4569999999999754
No 71
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=46.96 E-value=13 Score=28.81 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=18.1
Q ss_pred CchhhHHHHHHHHHHhhhhcC
Q 026451 210 GIIITAVLAFSLGVLLSRKFG 230 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~~~~ 230 (238)
-|++-.+..|.+|+|+++.|-
T Consensus 4 w~l~Lc~~SF~~G~lft~R~W 24 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNRMW 24 (95)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 467788999999999999776
No 72
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=45.99 E-value=82 Score=26.77 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 48 KEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 48 ~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
|++|+|.++ ++.|+|+|.+ +...+.| |.. +...++++.|.|...
T Consensus 11 P~~V~v~~~-~~~v~v~Gp~--------G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTID-GNVVTVKGPK--------GELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEe-CCEEEEEcCC--------eEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 789999999 9999999877 3344444 433 345567888888754
No 73
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=45.65 E-value=79 Score=23.65 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCCCCe-----------------EEEEE--eCCeEEEEEEEeeecceEeeEEEEEEE-CCCCCccCCeeEE
Q 026451 37 HYLLVDLPDFKKEQV-----------------KLQVD--SSGNITVSGEMLTSDNRYIMRFEQMFP-LPPNSDMDKISGK 96 (238)
Q Consensus 37 ~~l~vdLPGf~~edI-----------------~V~V~--~~~~L~I~Ger~~~e~~~~r~F~r~~~-LP~~vD~~~I~A~ 96 (238)
|.-.+++||.++++| .|... +.|.|+..|.-.. .|...+. +...-=.=.+.+.
T Consensus 1 f~~~i~vpg~sk~~ly~~~~~W~~~~~~~~~s~I~~~dke~g~I~~~g~~~~-------~f~~~~ls~~~~~i~y~l~i~ 73 (91)
T PF14730_consen 1 FTKVIEVPGMSKDQLYDRAKKWLAKNFKSANSVIQYSDKEEGTIIAKGEEWL-------VFSSSFLSLDRTRINYTLIID 73 (91)
T ss_pred CcEEEEcCCCCHHHHHHHHHHHHHHhcccccceEEEEcCCCCEEEEEEEEEE-------EEccccccccceEEEEEEEEE
Confidence 345678888877743 34433 4556666664432 2221111 1111111135667
Q ss_pred EeCCEEEEEEeC
Q 026451 97 FDGELLYVTVPK 108 (238)
Q Consensus 97 ~~dGvL~ItlPK 108 (238)
+.||-.++++-+
T Consensus 74 ~kDgk~r~~~~~ 85 (91)
T PF14730_consen 74 CKDGKYRLTITN 85 (91)
T ss_pred EECCEEEEEEEE
Confidence 788888887754
No 74
>PRK01844 hypothetical protein; Provisional
Probab=45.63 E-value=18 Score=26.97 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHhhhh
Q 026451 212 IITAVLAFSLGVLLSRK 228 (238)
Q Consensus 212 ~~~~v~~~~l~~~~~~~ 228 (238)
+++.++.+.+|+|++++
T Consensus 11 I~~li~G~~~Gff~ark 27 (72)
T PRK01844 11 VVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667778888888876
No 75
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=45.60 E-value=46 Score=23.45 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=28.7
Q ss_pred CeEEEEEEcCC-CCCCCeEEEEEeCCeEEEEEEEee
Q 026451 35 NGHYLLVDLPD-FKKEQVKLQVDSSGNITVSGEMLT 69 (238)
Q Consensus 35 d~~~l~vdLPG-f~~edI~V~V~~~~~L~I~Ger~~ 69 (238)
+.|.+.++|++ +.+++.+.++. ++.|.|.=.+..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~-~~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIG-NGVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEe-CCEEEEEEEeCC
Confidence 56889999985 79999999999 899999866644
No 76
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=45.59 E-value=19 Score=24.42 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHhhhhc
Q 026451 212 IITAVLAFSLGVLLSRKF 229 (238)
Q Consensus 212 ~~~~v~~~~l~~~~~~~~ 229 (238)
++.|++.|.+||++++..
T Consensus 18 iv~AilIl~vG~~va~~v 35 (53)
T PF05552_consen 18 IVGAILILIVGWWVAKFV 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468889999999998754
No 77
>PRK10404 hypothetical protein; Provisional
Probab=44.89 E-value=25 Score=27.53 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=19.4
Q ss_pred HHHHHhcc--CchhhHHHHHHHHHHhhhh
Q 026451 202 MKILRRNK--GIIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 202 ~~~~~~~~--~~~~~~v~~~~l~~~~~~~ 228 (238)
-...+.|. .|-+.|.+.|.||+|++|+
T Consensus 73 d~yV~e~Pw~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 73 DDYVHEKPWQGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhcC
Confidence 33444554 5667899999999998874
No 78
>PRK10132 hypothetical protein; Provisional
Probab=43.76 E-value=17 Score=28.91 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHHHHhhhh
Q 026451 210 GIIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~~ 228 (238)
.|-+.|.+.|.||+|++|+
T Consensus 89 svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 89 SVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5667899999999999875
No 79
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=43.28 E-value=37 Score=25.20 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.5
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEEeCCeEEEEE
Q 026451 34 SNGHYLLVDLP-DFKKEQVKLQVDSSGNITVSG 65 (238)
Q Consensus 34 ~d~~~l~vdLP-Gf~~edI~V~V~~~~~L~I~G 65 (238)
...|.-.+.|| ++.++.++-.+. +|.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~-nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLE-NGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEE-CCEEEEEe
Confidence 46888999999 699999999999 99999973
No 80
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=43.02 E-value=43 Score=24.91 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=27.0
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeC
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPK 108 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK 108 (238)
.|.-.+.|| +++++.|..++.++.|+|..-+
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 688888895 7899999999999999999843
No 81
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=42.97 E-value=61 Score=24.14 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCc
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKR 109 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~ 109 (238)
.|.-.+.|| +++.+.|..++.++.|+|+.-+.
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHE 42 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEEC
Confidence 688889997 78999999999999999998653
No 82
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=42.95 E-value=41 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCc
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKR 109 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~ 109 (238)
.|.-.+.|| ++.++.|+.+++||.|+|..-+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 688888886 67899999999999999998653
No 83
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=42.45 E-value=24 Score=23.07 Aligned_cols=17 Identities=41% Similarity=0.764 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhhhc
Q 026451 213 ITAVLAFSLGVLLSRKF 229 (238)
Q Consensus 213 ~~~v~~~~l~~~~~~~~ 229 (238)
+..+|.|+||++.|++|
T Consensus 21 ~GlLlifvl~vLFssYf 37 (39)
T PRK00753 21 LGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45678888999999887
No 84
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=42.29 E-value=27 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=24.1
Q ss_pred hhHHHHHHHHhccCchhhHHHHHHHHHHhhh
Q 026451 197 PFERGMKILRRNKGIIITAVLAFSLGVLLSR 227 (238)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~ 227 (238)
.+.++++-++..+-++-.++.+|++|+|...
T Consensus 39 ~~kr~~~~~R~rN~~Tgl~L~~~v~gIY~YT 69 (100)
T PF09813_consen 39 QLKRKLQRRRRRNLLTGLALGAFVVGIYAYT 69 (100)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhe
Confidence 4556788887777777788899999999754
No 85
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=41.93 E-value=49 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=20.8
Q ss_pred CCCCCCCeEEEEEeCCeEEEEEEEeee
Q 026451 44 PDFKKEQVKLQVDSSGNITVSGEMLTS 70 (238)
Q Consensus 44 PGf~~edI~V~V~~~~~L~I~Ger~~~ 70 (238)
++|...+|.|.+. ++.+.++|.-...
T Consensus 12 ~~~~~~~i~v~v~-~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVE-NGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEE-CTEEEEEEEESSC
T ss_pred cccCCCeEEEEEE-CCEEEEEeeCcHH
Confidence 4677778999999 9999999988654
No 86
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=41.06 E-value=87 Score=27.15 Aligned_cols=52 Identities=25% Similarity=0.217 Sum_probs=34.3
Q ss_pred cCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 43 LPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 43 LPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
.|=.=|++++|++. ++.|+|+|.+. ...+.|.=|. ..|....+||-|.|..+
T Consensus 8 ~~I~IP~~V~V~i~-~~~v~VkGp~G--------~L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 8 EKIRIPEGVTVTVK-SRKVTVTGKYG--------ELTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCEecCCCCEEEEE-CCEEEEECCCc--------eEEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 34334899999999 99999998762 3444333111 24555678888888754
No 87
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=40.82 E-value=79 Score=24.51 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.7
Q ss_pred ccceeEEEcCCeEEEEEEcCCC-----CCCCeEEEEEeCCeEEEE
Q 026451 25 VPSSGWTEDSNGHYLLVDLPDF-----KKEQVKLQVDSSGNITVS 64 (238)
Q Consensus 25 ~P~~di~e~~d~~~l~vdLPGf-----~~edI~V~V~~~~~L~I~ 64 (238)
.|.+.|+++++.|.|.+--+.. .++...|+-+ ++.+.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~-~g~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEE-DGNLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEe-CCEEEEe
Confidence 4999999999999999866554 6777777766 7777774
No 88
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=40.75 E-value=99 Score=26.31 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=31.2
Q ss_pred CCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 48 KEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 48 ~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
|++|+|.++ ++.|+|+|.+ +...+.| |.. +...++++.|.|...
T Consensus 12 P~~V~v~~~-~~~v~vkGp~--------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTIN-GNVVTVKGPK--------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEE-CCEEEEECCC--------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 789999999 9999999877 3445544 433 344567887777754
No 89
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=40.45 E-value=83 Score=21.90 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.0
Q ss_pred eEE-EcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEE
Q 026451 29 GWT-EDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGE 66 (238)
Q Consensus 29 di~-e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ge 66 (238)
.+. -....|.|.+..+||.+-.-+|.+..+....|...
T Consensus 28 ~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 28 TLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred eeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 444 45778999999999999888888886667766654
No 90
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=40.43 E-value=62 Score=22.78 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=30.6
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEeCcCCc
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAKE 112 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~~~~ 112 (238)
.|.-.+.||. ++.+.|+.++.++.|.|+.-+....
T Consensus 8 ~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 8 AYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred EEEEEEECCC-CCHHHeEEEEECCEEEEEEEEeccc
Confidence 6888999987 8999999999999999998877543
No 91
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=39.89 E-value=12 Score=31.74 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=9.2
Q ss_pred hhhhcCCCCCCCCC
Q 026451 225 LSRKFGSADHIDSD 238 (238)
Q Consensus 225 ~~~~~~~~~~~~~~ 238 (238)
.-.+-+-.|+||||
T Consensus 73 ~c~r~kktdfidSd 86 (154)
T PF04478_consen 73 FCIRRKKTDFIDSD 86 (154)
T ss_pred EEEecccCccccCC
Confidence 33444557899987
No 92
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=38.35 E-value=29 Score=23.92 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=17.3
Q ss_pred HHHHhccCchhhHHHHHHHHHHhh
Q 026451 203 KILRRNKGIIITAVLAFSLGVLLS 226 (238)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~l~~~~~ 226 (238)
+.+++|++-++.+++.|.||+++-
T Consensus 2 e~~~~~~~~iiG~~~G~ila~l~l 25 (51)
T PF10031_consen 2 EFWKNHRGKIIGGLIGLILALLIL 25 (51)
T ss_pred hHHHHCcchHHHHHHHHHHHHHHH
Confidence 457788888887777777776553
No 93
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=37.08 E-value=55 Score=21.90 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=14.3
Q ss_pred chhHHHHHHHHhccCchh
Q 026451 196 HPFERGMKILRRNKGIII 213 (238)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (238)
.+.+...+-++|||--++
T Consensus 3 s~~~~~~~~f~~nk~a~~ 20 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVI 20 (56)
T ss_pred CHHHHHHHHHHhCchHHH
Confidence 467889999999995555
No 94
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=36.96 E-value=1e+02 Score=26.35 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 48 KEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 48 ~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
|+.|+|+++ ++.|+|+|.+. ... +.||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~-~~~v~vkGp~G--------~l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSID-DQIIKVKGPKG--------TLS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEE-CCEEEEECCCE--------EEE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 688999999 99999998763 233 344443 444567887777754
No 95
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=36.46 E-value=49 Score=24.71 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=27.8
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEE-EeCCeEEEEE
Q 026451 34 SNGHYLLVDLP-DFKKEQVKLQV-DSSGNITVSG 65 (238)
Q Consensus 34 ~d~~~l~vdLP-Gf~~edI~V~V-~~~~~L~I~G 65 (238)
...|.=.+.|| ++.++.|+-.+ . +|.|+|+.
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~-dGvL~I~~ 85 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSP-SGHLHIRA 85 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCC-CceEEEEc
Confidence 46788999998 79999999999 6 99999975
No 96
>PRK00523 hypothetical protein; Provisional
Probab=36.17 E-value=30 Score=25.72 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHhhhh
Q 026451 212 IITAVLAFSLGVLLSRK 228 (238)
Q Consensus 212 ~~~~v~~~~l~~~~~~~ 228 (238)
++..++.+.+|+|++++
T Consensus 12 i~~li~G~~~Gffiark 28 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677888888875
No 97
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=35.72 E-value=34 Score=22.20 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHhhhhc
Q 026451 213 ITAVLAFSLGVLLSRKF 229 (238)
Q Consensus 213 ~~~v~~~~l~~~~~~~~ 229 (238)
+..+|.|+||+|.|++|
T Consensus 19 ~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 35677888888888876
No 98
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.55 E-value=28 Score=25.83 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=14.4
Q ss_pred CchhhHHHHHHHHHHhhhh
Q 026451 210 GIIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~~ 228 (238)
.|||..++.+.+|++++||
T Consensus 9 ~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 9 LIVLALLAGLIGGFFIARK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777888999886
No 99
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=33.75 E-value=1.9e+02 Score=21.16 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=39.4
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEe-----eecceEeeEEEEEEECCCCCccCCeeEEEeC
Q 026451 34 SNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEML-----TSDNRYIMRFEQMFPLPPNSDMDKISGKFDG 99 (238)
Q Consensus 34 ~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~-----~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~d 99 (238)
++...|...+-||.|.+|.|+...++.....+... ..++.|. ..-.+.++.. +.+..++...+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~--~~s~l~v~~~-~~~~ytC~V~H 81 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQ--LWVTLEVPPE-DKARYSCRVEH 81 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEE--EEEEEEECCC-CCCEEEEEEEe
Confidence 56789999999999999999988566433333211 1122221 2235555555 66777777764
No 100
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=33.41 E-value=34 Score=24.56 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=13.3
Q ss_pred chhhHHHHHHHHHHhhhh
Q 026451 211 IIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 211 ~~~~~v~~~~l~~~~~~~ 228 (238)
+|+.+++++.||.+++..
T Consensus 42 ~~~~c~~S~~lG~~~~~~ 59 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAWH 59 (60)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 345677888899988764
No 101
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=33.15 E-value=1e+02 Score=27.59 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=23.5
Q ss_pred eCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 57 SSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 57 ~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
++|.|+|+|+++.. +.++. +|...+. |.+++.++
T Consensus 155 pNGNLvI~GeK~i~vN~~~e~i-rlsGiVR-P~DI~~~N 191 (230)
T PRK12700 155 PNGNLQIAGEKQIAINRGSEYV-RFSGVVD-PRSITGSN 191 (230)
T ss_pred CCCCEEEEEEEEEEECCCEEEE-EEEEEEC-HHHCCCCC
Confidence 89999999999875 33454 4544333 67777766
No 102
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=32.67 E-value=1.1e+02 Score=27.40 Aligned_cols=40 Identities=25% Similarity=0.565 Sum_probs=26.2
Q ss_pred eEEEEE---eCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 51 VKLQVD---SSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 51 I~V~V~---~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
|.+.|. ++|.|.|+|+++.. +.++. +|...+. |++++.++
T Consensus 145 Itv~V~~VlpNGnL~I~GeK~v~vN~e~e~i-~lsGvVR-P~DI~~~N 190 (230)
T PRK12701 145 ISVTVAKVLANGNMVVQGEKWVRINQGNEFV-RLSGIVR-PQDIKADN 190 (230)
T ss_pred EEEEEEEECCCCCEEEEEEEEEEECCCeEEE-EEEEEEC-HHHCCCCC
Confidence 444444 89999999999875 34455 4544333 67777665
No 103
>CHL00038 psbL photosystem II protein L
Probab=32.66 E-value=43 Score=21.82 Aligned_cols=17 Identities=41% Similarity=0.553 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHhhhhc
Q 026451 213 ITAVLAFSLGVLLSRKF 229 (238)
Q Consensus 213 ~~~v~~~~l~~~~~~~~ 229 (238)
+..+|.|+||++.|++|
T Consensus 20 ~GLLlifvl~vlfssyf 36 (38)
T CHL00038 20 WGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35677888888888876
No 104
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=31.95 E-value=43 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.2
Q ss_pred CchhhHHHHHHHHHHhhhhc
Q 026451 210 GIIITAVLAFSLGVLLSRKF 229 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~~~ 229 (238)
.=++..++|..||.+||+-|
T Consensus 28 ~~ll~vllsIalGylvs~Ff 47 (48)
T PF06612_consen 28 ARLLIVLLSIALGYLVSSFF 47 (48)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34668899999999999844
No 105
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=31.84 E-value=1.2e+02 Score=27.10 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=23.6
Q ss_pred eCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 57 SSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 57 ~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
++|.|.|+|+++.. +.++. +|...+ =|.+++.++
T Consensus 148 pNGnL~I~GeK~i~vN~~~e~I-~lsGvV-RP~DI~~~N 184 (224)
T PRK12698 148 PNGNLVIRGEKWISINNGDEFI-RLTGIV-RSQDITPDN 184 (224)
T ss_pred CCCCEEEEEEEEEEECCCEEEE-EEEEEE-CHHHCCCCC
Confidence 88999999999875 33454 454433 367777776
No 106
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=31.41 E-value=92 Score=22.22 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.8
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
...-.|.||.+++.+.+...|.+.-|.|.+.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 4566778999999999999999988999885
No 107
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=30.84 E-value=1.1e+02 Score=27.34 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=23.0
Q ss_pred eCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 57 SSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 57 ~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
++|.|.|+|+++.. +..+. +|...+. |.+++.++
T Consensus 151 pNGnL~I~GeK~i~vN~e~e~I-rlsGvVR-P~DI~~~N 187 (226)
T PRK12697 151 PNGNLVVSGEKQMLINQGNEFV-RFSGVVN-PNTISGAN 187 (226)
T ss_pred CCCCEEEEEEEEEEECCCEEEE-EEEEEEC-HHHCCCCC
Confidence 89999999999875 33454 4544333 66666665
No 108
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=30.24 E-value=40 Score=24.33 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=14.1
Q ss_pred chhhHHHHHHHHHHhhhh
Q 026451 211 IIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 211 ~~~~~v~~~~l~~~~~~~ 228 (238)
|++.|+|-|-||++.-+-
T Consensus 10 i~lcALIf~pLgyl~~r~ 27 (62)
T TIGR03493 10 VLLCALIFFPLGYLARRS 27 (62)
T ss_pred HHHHHHHHHhHHHHHHhh
Confidence 567999999999776543
No 109
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=30.15 E-value=1.3e+02 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.422 Sum_probs=26.1
Q ss_pred eEEEEE---eCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 51 VKLQVD---SSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 51 I~V~V~---~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
|.+.|. ++|.|.|+|++... +..+. +|...+. |.+++.++
T Consensus 136 Ita~V~~VlpNGnL~I~GeK~i~vN~e~e~i-~~sGvVR-P~DI~~~N 181 (221)
T PRK12407 136 ITVAVHQVLPNGVLVIRGEKWLTLNQGDEYM-RVTGLVR-ADDIARDN 181 (221)
T ss_pred EEEEEEEECCCCCEEEEEEEEEEECCCEEEE-EEEEEEC-HHHCCCCC
Confidence 455544 89999999999875 33444 4544333 66776665
No 110
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=28.66 E-value=1.7e+02 Score=25.29 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=30.7
Q ss_pred CCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEe
Q 026451 48 KEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVP 107 (238)
Q Consensus 48 ~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlP 107 (238)
|+.++|+++ ++.|+|+|.+. ...+ .||.. + =.|....+++.|.|.-+
T Consensus 12 P~~V~V~i~-~~~ItVkGpkG--------~Ls~--~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVK-DRIVTVKGKRG--------TLTK--DLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEe-CCEEEEECCCc--------EEEE--EcCCC-C-cEEEEEecCCEEEEEeC
Confidence 789999999 99999998763 2333 33331 0 12444566788888744
No 111
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=1.1e+02 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=29.1
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEEeCCeEEEEEEEeee
Q 026451 34 SNGHYLLVDLP-DFKKEQVKLQVDSSGNITVSGEMLTS 70 (238)
Q Consensus 34 ~d~~~l~vdLP-Gf~~edI~V~V~~~~~L~I~Ger~~~ 70 (238)
...|.-.+.|| ++.++.++-++. +|.|+|.-.+...
T Consensus 99 ~~~f~r~~~Lp~~v~~~~~~A~~~-nGvL~I~lpk~~~ 135 (146)
T COG0071 99 YGEFERTFRLPEKVDPEVIKAKYK-NGLLTVTLPKAEP 135 (146)
T ss_pred eeeEEEEEECcccccccceeeEee-CcEEEEEEecccc
Confidence 35677889998 578888999998 9999998766543
No 112
>PRK10568 periplasmic protein; Provisional
Probab=27.32 E-value=3.9e+02 Score=22.98 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCCCCCCeEEEEEeCCeEEEEEEEee
Q 026451 44 PDFKKEQVKLQVDSSGNITVSGEMLT 69 (238)
Q Consensus 44 PGf~~edI~V~V~~~~~L~I~Ger~~ 69 (238)
++++..+|+|.+. +|.++++|.-..
T Consensus 73 ~~i~~~~I~V~v~-~G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTH-QKVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEE-CCEEEEEEEeCC
Confidence 6788889999999 999999998764
No 113
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.44 E-value=1.3e+02 Score=27.03 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=22.8
Q ss_pred eCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 57 SSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 57 ~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
++|.|+|+|+++.. +.++. +|.-.+. |++++.++
T Consensus 161 PNGNLvI~G~k~v~vN~e~~~i-~lsGvVR-P~DI~~~N 197 (236)
T PRK12696 161 PGGLMQVEGARETRVNDETQYI-VVSGLVR-PRDIGPDN 197 (236)
T ss_pred CCCCEEEEEEEEEEECCCEEEE-EEEEEEC-HHHCCCCC
Confidence 89999999999875 33444 4444332 67777665
No 114
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.26 E-value=35 Score=25.54 Aligned_cols=19 Identities=32% Similarity=0.711 Sum_probs=14.7
Q ss_pred CchhhHHHHHHHHHHhhhh
Q 026451 210 GIIITAVLAFSLGVLLSRK 228 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~~ 228 (238)
|+.|.++++.|||+.+.||
T Consensus 9 g~Fllvi~gMsiG~I~krk 27 (77)
T COG2991 9 GIFLLVIAGMSIGYIFKRK 27 (77)
T ss_pred HHHHHHHHHHhHhhheecc
Confidence 4566778888888888776
No 115
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=25.06 E-value=34 Score=28.88 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=18.7
Q ss_pred CCCCCccCCeeEEEeCCEEEEEEeC
Q 026451 84 LPPNSDMDKISGKFDGELLYVTVPK 108 (238)
Q Consensus 84 LP~~vD~~~I~A~~~dGvL~ItlPK 108 (238)
|.+.++.+.-.+.|.||||+|.|+-
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhcCccccccccccceEEEEecC
Confidence 4455555566678999999999994
No 116
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.75 E-value=63 Score=22.41 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=8.3
Q ss_pred CchhhHHHHHHHHHHh
Q 026451 210 GIIITAVLAFSLGVLL 225 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~ 225 (238)
|++ -|+|+|.+|+++
T Consensus 18 GLi-~A~vlfi~Gi~i 32 (50)
T PF02038_consen 18 GLI-FAGVLFILGILI 32 (50)
T ss_dssp HHH-HHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHH
Confidence 444 455566666654
No 117
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=24.74 E-value=50 Score=25.01 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=28.4
Q ss_pred ccccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEE
Q 026451 23 EFVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNIT 62 (238)
Q Consensus 23 ~~~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~ 62 (238)
-+.|........+...|..-+-||.|.+|.|+...+|.-.
T Consensus 6 v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~ 45 (100)
T cd07699 6 IFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATV 45 (100)
T ss_pred EECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEEC
Confidence 3444443343456689999999999999999997555443
No 118
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=24.02 E-value=73 Score=24.95 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCeeEEEeCCEEEEEEeC
Q 026451 91 DKISGKFDGELLYVTVPK 108 (238)
Q Consensus 91 ~~I~A~~~dGvL~ItlPK 108 (238)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 456778889999999984
No 119
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=23.60 E-value=1.9e+02 Score=26.15 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=23.6
Q ss_pred EEEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 54 QVDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 54 ~V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
+|.++|.|+|+|+++.. +.++. +|...+ =|.+++.++
T Consensus 155 ~VLpNGNL~I~G~Kev~vN~~~e~i-~vsGvV-RP~DI~~~N 194 (230)
T COG2063 155 QVLPNGNLVIEGEKEVRVNGEKEII-RVSGVV-RPDDISGDN 194 (230)
T ss_pred EEcCCCCEEEEEEEEEEECCceEEE-EEeeeE-cccccCCCC
Confidence 34489999999999875 23444 444332 267766665
No 120
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=23.37 E-value=74 Score=21.61 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHhhhhcC
Q 026451 212 IITAVLAFSLGVLLSRKFG 230 (238)
Q Consensus 212 ~~~~v~~~~l~~~~~~~~~ 230 (238)
++++++++.++|++++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~i~ 24 (70)
T PF00672_consen 6 LIILLLSLLLAWLLARRIT 24 (70)
T ss_dssp HHHHHHHHHHHHH--HTTC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777778888877654
No 121
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=23.08 E-value=51 Score=23.40 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=19.8
Q ss_pred CCCCCCeEEEEEeCCeEEEEEEEe
Q 026451 45 DFKKEQVKLQVDSSGNITVSGEML 68 (238)
Q Consensus 45 Gf~~edI~V~V~~~~~L~I~Ger~ 68 (238)
-|+.+.|.|+.. .+.|.|.|+.-
T Consensus 22 ~f~~~~I~l~t~-~g~l~I~G~~L 44 (66)
T PF07873_consen 22 SFDDEEIRLNTK-KGKLTIKGEGL 44 (66)
T ss_dssp EEETTEEEEEET-TEEEEEEEEEE
T ss_pred EECCCEEEEEeC-CEEEEEECceE
Confidence 478899999998 99999999763
No 122
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=22.93 E-value=57 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.741 Sum_probs=13.1
Q ss_pred chhhHHHHHHHHHHhhh
Q 026451 211 IIITAVLAFSLGVLLSR 227 (238)
Q Consensus 211 ~~~~~v~~~~l~~~~~~ 227 (238)
|++-++++|.+|++++-
T Consensus 4 V~lL~~~~l~iGlmIGY 20 (47)
T PF11772_consen 4 VLLLAILALAIGLMIGY 20 (47)
T ss_pred HHHHHHHHHHHHHHeee
Confidence 34578889999998864
No 123
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=22.50 E-value=1.5e+02 Score=26.23 Aligned_cols=90 Identities=13% Similarity=0.225 Sum_probs=60.2
Q ss_pred cccCCCCccccccceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEE-ECCCCCccCC
Q 026451 14 TLTNNPIVKEFVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMF-PLPPNSDMDK 92 (238)
Q Consensus 14 ~~~~~~~~~~~~P~~di~e~~d~~~l~vdLPGf~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~-~LP~~vD~~~ 92 (238)
+.+-...|..+.-.|.|-++++..-+.+.|-|+..|.+.|... ...|-+.-..-. ++ .|.-.+ .|-..+++++
T Consensus 63 ~~pvs~~yl~~vt~ygWDQs~kfVK~yItL~GV~eenVqv~ft-p~Sldl~v~dlq--GK---~y~~~vnnLlk~I~vEk 136 (224)
T KOG3260|consen 63 GKPVSSSYLNYVTLYGWDQSNKFVKMYITLEGVDEENVQVEFT-PMSLDLKVHDLQ--GK---NYRMIVNNLLKPISVEK 136 (224)
T ss_pred CCcchhhhHHHhhhcCccccCCeeEEEEEeecccccceeEEec-ccceeeeeeecC--Cc---ceeeehhhhccccChhh
Confidence 3333444556667788989999999999999999999999998 787777542211 11 232222 2345577777
Q ss_pred eeEEEeCCEEEEEEeCc
Q 026451 93 ISGKFDGELLYVTVPKR 109 (238)
Q Consensus 93 I~A~~~dGvL~ItlPK~ 109 (238)
-.-...-....|.+-|.
T Consensus 137 s~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 137 SSKKVKTDTVLILCKKV 153 (224)
T ss_pred cccccccceEEEeehhh
Confidence 66666666667777554
No 124
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=22.06 E-value=66 Score=24.95 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=13.2
Q ss_pred eEEEeCCEEEEEEeCc
Q 026451 94 SGKFDGELLYVTVPKR 109 (238)
Q Consensus 94 ~A~~~dGvL~ItlPK~ 109 (238)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 5778899999999654
No 125
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.92 E-value=74 Score=23.50 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.7
Q ss_pred CchhhHHHHHHHHHHhhh
Q 026451 210 GIIITAVLAFSLGVLLSR 227 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~~~~ 227 (238)
-+++.++++|.+|++..+
T Consensus 16 il~~~~iisfi~Gy~~q~ 33 (76)
T PF06645_consen 16 ILIISAIISFIVGYITQS 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356699999999998765
No 126
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=21.86 E-value=86 Score=29.90 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=24.8
Q ss_pred CchhHHHHHHHHhccCchh-hHHHHHHHHHHhh
Q 026451 195 SHPFERGMKILRRNKGIII-TAVLAFSLGVLLS 226 (238)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~-~~v~~~~l~~~~~ 226 (238)
.--|+..+.+|.+++.+++ .+++++.+|++++
T Consensus 26 eidl~~ll~~L~r~k~~Il~~~~~~~~~g~~ya 58 (377)
T PRK10381 26 EIDLFELISVLWKAKKTIIAITFAFACAGLLIS 58 (377)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999997665 6666777777766
No 127
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=21.71 E-value=1e+02 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.3
Q ss_pred CeeEEEeCCEEEEEEeCc
Q 026451 92 KISGKFDGELLYVTVPKR 109 (238)
Q Consensus 92 ~I~A~~~dGvL~ItlPK~ 109 (238)
.+.+.+.+|||+|+++..
T Consensus 31 d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp TEEEEEETTEEEEEETTS
T ss_pred ceEEEccCCEEEEEECCC
Confidence 578899999999999654
No 128
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=21.40 E-value=80 Score=24.81 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.5
Q ss_pred eeEEEeCCEEEEEEeCc
Q 026451 93 ISGKFDGELLYVTVPKR 109 (238)
Q Consensus 93 I~A~~~dGvL~ItlPK~ 109 (238)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 66888999999999854
No 129
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.99 E-value=62 Score=32.61 Aligned_cols=22 Identities=23% Similarity=0.165 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHhhhhcCCCC
Q 026451 212 IITAVLAFSLGVLLSRKFGSAD 233 (238)
Q Consensus 212 ~~~~v~~~~l~~~~~~~~~~~~ 233 (238)
.+.+|||..|+||.++.|++..
T Consensus 485 AliVLLAaLlSfLtg~~fq~~v 506 (538)
T PF05781_consen 485 ALIVLLAALLSFLTGLFFQRCV 506 (538)
T ss_pred HHHHHHHHHHHHHhcccccchh
Confidence 3477889999999999998753
No 130
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=20.94 E-value=80 Score=24.67 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.9
Q ss_pred eeEEEeCCEEEEEEeC
Q 026451 93 ISGKFDGELLYVTVPK 108 (238)
Q Consensus 93 I~A~~~dGvL~ItlPK 108 (238)
+.+.+.+|||+|+++.
T Consensus 27 ~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 27 IDCERAGGVLTLTFEN 42 (102)
T ss_pred eeeecCCCEEEEEECC
Confidence 6677889999999985
No 131
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=20.82 E-value=2.1e+02 Score=24.78 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=32.3
Q ss_pred CCCCCeEEEEEeCCeEEEEEEEeeecceEeeEEEEEEECCCCCccCCeeEEEeCCEEEEEEeCcCC
Q 026451 46 FKKEQVKLQVDSSGNITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAK 111 (238)
Q Consensus 46 f~~edI~V~V~~~~~L~I~Ger~~~e~~~~r~F~r~~~LP~~vD~~~I~A~~~dGvL~ItlPK~~~ 111 (238)
|.+..+.+... .+.+.|+|..+.- .-.-.+......-.+.-+|++|.|.+.=-+..+
T Consensus 128 F~~~~i~v~~~-~~~V~V~Gtlkt~--------vg~~~~~~~~k~Y~l~~~y~~G~l~L~~f~ev~ 184 (188)
T PRK13726 128 FYQTSVRVWPQ-YGRVDIRGVLKTW--------IGDSKPFTEIKHYILILKRENGVTWLDNFGETD 184 (188)
T ss_pred EEeeeEEEccC-CCEEEEEEEEEEE--------ECCcccCchheEEEEEEEEcCCEEEEEEEEecC
Confidence 44566666666 8888888876441 100011111222345667889999987655433
No 132
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.80 E-value=77 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.190 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCC
Q 026451 213 ITAVLAFSLGVLLSRKFGSADHI 235 (238)
Q Consensus 213 ~~~v~~~~l~~~~~~~~~~~~~~ 235 (238)
|++||-+.-=||--|...||-|-
T Consensus 271 l~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 271 LTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 35555555567888899999983
No 133
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.66 E-value=72 Score=25.98 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred hHHHHHHHHhcc----CchhhHHHHHHHHHHhhhhcC
Q 026451 198 FERGMKILRRNK----GIIITAVLAFSLGVLLSRKFG 230 (238)
Q Consensus 198 ~~~~~~~~~~~~----~~~~~~v~~~~l~~~~~~~~~ 230 (238)
....++-+++.- +|+++++..|..|||.+....
T Consensus 68 ~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 68 PAQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555 666788888889998887554
No 134
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=20.63 E-value=1.7e+02 Score=22.22 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=26.7
Q ss_pred EEEEEEECCCCCccCCeeEEEeCCEEEEEE
Q 026451 77 RFEQMFPLPPNSDMDKISGKFDGELLYVTV 106 (238)
Q Consensus 77 ~F~r~~~LP~~vD~~~I~A~~~dGvL~Itl 106 (238)
.-.-+|+||.++....+...|...-|.|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 456678899999999999999999999998
No 135
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.48 E-value=83 Score=19.39 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=9.2
Q ss_pred CchhhHHHHHHHHHH
Q 026451 210 GIIITAVLAFSLGVL 224 (238)
Q Consensus 210 ~~~~~~v~~~~l~~~ 224 (238)
++++..+|+|+|.-|
T Consensus 4 ~vi~G~ilv~lLlgY 18 (29)
T PRK14748 4 GVITGVLLVFLLLGY 18 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666777665444
No 136
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=20.17 E-value=1.8e+02 Score=26.12 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=22.8
Q ss_pred EEeCCeEEEEEEEeee---cceEeeEEEEEEECCCCCccCC
Q 026451 55 VDSSGNITVSGEMLTS---DNRYIMRFEQMFPLPPNSDMDK 92 (238)
Q Consensus 55 V~~~~~L~I~Ger~~~---e~~~~r~F~r~~~LP~~vD~~~ 92 (238)
|.++|.|+|+|+++.. +.++. +|... -=|++++.++
T Consensus 157 VLPNGNLvI~G~kev~vN~e~~~i-~vsGv-VRP~DI~~~N 195 (234)
T PRK12788 157 VLPNGNLLISGSQEVRVNYEMRVL-NVGGI-VRPLDITRNN 195 (234)
T ss_pred EcCCCCEEEEEEEEEEECCCEEEE-EEEEE-ECHHHCCCCC
Confidence 3389999999999875 33444 34332 2366666665
No 137
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=20.16 E-value=1.6e+02 Score=24.97 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCCCCeEEEEEeCCeEEEEEEEe
Q 026451 46 FKKEQVKLQVDSSGNITVSGEML 68 (238)
Q Consensus 46 f~~edI~V~V~~~~~L~I~Ger~ 68 (238)
|.++++.+... .+.+.|+|...
T Consensus 128 F~~~~i~~d~~-~~~V~V~G~l~ 149 (187)
T PF05309_consen 128 FYPKSIEVDPE-TLTVFVTGTLK 149 (187)
T ss_pred EEEeEEEEecC-CCEEEEEEEEE
Confidence 45566776666 88888888754
Done!