RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026451
(238 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 66.0 bits (162), Expect = 3e-14
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGE---------MLTSDNRYIMRFEQ 80
E + + + DLP FKKE +K++V+ G +T+SGE R F +
Sbjct: 2 VYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSR 60
Query: 81 MFPLPPNSDMDKISGKFDGELLYVTVPK 108
F LP + D DKI + +L +T+PK
Sbjct: 61 SFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 59.9 bits (146), Expect = 3e-12
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIM--RFEQMFPLPPN 87
W + + + VDLP KKE +K++V+ +T+SG+ + R FE+ F LP +
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPED 59
Query: 88 SDMDKISGKFDGELLYVTVPK 108
D +K + +L +T+PK
Sbjct: 60 VDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 57.3 bits (139), Expect = 4e-11
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGE--------------MLTSDNRYI 75
W E H D+P KKE VK++V+ + +SGE + S R++
Sbjct: 4 WKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFV 63
Query: 76 MRFEQMFPLPPNSDMDKISGKFDGELLYVTVPK 108
RF LP N+D D++ + +L VTVPK
Sbjct: 64 RRFR----LPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 51.1 bits (123), Expect = 1e-08
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGE---MLTSDNRYIMR-----FEQM 81
ED + + +D+P FK E++K++V+ + V G+ D+ F +
Sbjct: 2 IKEDKDAFVVKLDVPGFKPEELKVKVED-NRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60
Query: 82 FPLPPNSDMDKISGKFDGELLYVTVPKRAKEESTEQP 118
F LP N+D DK+ +L VTVPK E +
Sbjct: 61 FVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRR 97
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 51.6 bits (124), Expect = 2e-08
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 23 EFVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGE----------MLTSDN 72
P E + + + +LP KE +++ V+ +T+ GE
Sbjct: 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRE 96
Query: 73 RYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAKEESTEQ 117
R FE+ F LP D + I K+ LL VT+PK EE +
Sbjct: 97 RAYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEKKPK 141
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 44.0 bits (105), Expect = 3e-06
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 32 EDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS------DNRYIMR------FE 79
E + + + DLP FKKE +KL G +T+S + S YI R F
Sbjct: 7 ETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFS 65
Query: 80 QMFPLPPNSDMDKISGKFDGELLYVTVPK 108
+ F LP N D ++I K++ +L +T+PK
Sbjct: 66 RSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 38.7 bits (91), Expect = 2e-04
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 32 EDSNGHYLL-VDLPDFKKEQVKLQVDSSGNITVSG--EMLTSDNRYIMR-FEQMFPLPPN 87
D + + + +D+ FK E++K++V S + V G E ++ Y+ R F + + LP
Sbjct: 3 NDDDEKFQVTLDVKGFKPEELKVKV-SDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEG 61
Query: 88 SDMDKISGKFDGE-LLYVTVPK 108
D D ++ + +L + PK
Sbjct: 62 VDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|238403 cd00780, NTF2, Nuclear transport factor 2 (NTF2) domain plays an
important role in the trafficking of macromolecules,
ions and small molecules between the cytoplasm and
nucleus. This bi-directional transport of macromolecules
across the nuclear envelope requires many soluble
factors that includes GDP-binding protein Ran (RanGDP).
RanGDP is required for both import and export of
proteins and poly(A) RNA. RanGDP also has been
implicated in cell cycle control, specifically in
mitotic spindle assembly. In interphase cells, RanGDP is
predominately nuclear and thought to be GTP bound, but
it is also present in the cytoplasm, probably in the
GDP-bound state. NTF2 mediates the nuclear import of
RanGDP. NTF2 binds to both RanGDP and FxFG
repeat-containing nucleoporins.
Length = 119
Score = 31.5 bits (72), Expect = 0.13
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 40 LVDLPDFKKEQVKLQ-VDS----SGN--ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
L LP F+K + K+ VDS SG + V+G L D + +F Q F L P +
Sbjct: 52 LSSLP-FQKTKHKITTVDSQPTPSGGVIVMVTGS-LKLDEQPPRKFSQTFVLAPQNG 106
>gnl|CDD|199833 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases and related
proteins. This family is composed of dehydrogenases
with pyrroloquinoline quinone (PQQ) as a cofactor, such
as ethanol, methanol, and membrane-bound glucose
dehydrogenases. The alignment model contains an 8-bladed
beta-propeller, and the family also includes distantly
related proteins which are not enzymatically active and
do not bind PQQ.
Length = 434
Score = 30.7 bits (69), Expect = 0.63
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 25 VPSSGWTEDSNGHYLLVDLP-DFKKEQVKLQVDSSGNITV----SGEMLTS---DNRYIM 76
P W D + +L D+ KK +V +GN V +GE++++
Sbjct: 252 TPHDAWDYDGDNTPVLADIKVKGKKVKVLFAPAKNGNFYVLDRRNGELVSARPLVPDSYD 311
Query: 77 RFEQMFPLPPN---SDMDKISGK 96
++F +P N +D ++G
Sbjct: 312 PDRELFYVPANGRIMALDPVTGV 334
>gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional.
Length = 936
Score = 28.3 bits (63), Expect = 4.6
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 85 PPNSDMDKI-----SGKFDGELLYV-----TVPKRAKEESTEQPSLPASASGENEQ 130
P + D++ + G F ++ +V VP R K+ ST+ P + + E+
Sbjct: 320 PKSLDLNGVLATLAKGAFSKDVAWVKDNRRPVPTRGKKSSTDHPPIHPTGVATREE 375
>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2
domain containing protein 4B (SH2D4B). SH2D4B contains
a single SH2 domain. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 103
Score = 26.8 bits (59), Expect = 5.1
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 33 DSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSD 71
D N H L DL DF KE++ IT SG L +
Sbjct: 70 DPNRHATLTDLIDFHKEEI---------ITTSGGELLQE 99
>gnl|CDD|217977 pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase.
Pyruvyl-transferases involved in
peptidoglycan-associated polymer biosynthesis. CsaB in
Bacillus anthracis is necessary for the non-covalent
anchoring of proteins containing an SLH (S-layer
homology) domain to peptidoglycan-associated pyruvylated
polysaccharides. WcaK and AmsJ are involved in the
biosynthesis of colanic acid in Escherichia coli and of
amylovoran in Erwinia amylovora.
Length = 209
Score = 27.2 bits (60), Expect = 6.2
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 11/117 (9%)
Query: 127 ENEQQILHRNDDIPENVVEESNDHQMREGDDDRACQTNNKEKKSNKSEKDSCVDSFGEDF 186
E ++L + E + + R+ D +T K K K+ V G D
Sbjct: 9 EALLKLLKKLGPDAEIIDYSPEPSETRKLLRDLNSKTLKLLKFLRKLRKNDDVIIVGGDG 68
Query: 187 LRKWGNEPSHPFERGMKILRRNKGIIITAVLAFSLGV--------LLSRKFGSADHI 235
+ + K +I+ L +G LL + AD I
Sbjct: 69 DLGNLGDLLRLLRLAFVAKKLGKPVIL---LGQGIGPFLNEALRKLLKKLLSKADLI 122
>gnl|CDD|224626 COG1712, COG1712, Predicted dinucleotide-utilizing enzyme [General
function prediction only].
Length = 255
Score = 27.0 bits (60), Expect = 8.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 199 ERGMKILRRNKGIIITAVLAFSLGVLLSRKFGSA 232
E KIL+ +I+ +V A + L R A
Sbjct: 75 EYVPKILKAGIDVIVMSVGALADEGLRERLRELA 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.131 0.376
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,989,149
Number of extensions: 1101449
Number of successful extensions: 878
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 33
Length of query: 238
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 144
Effective length of database: 6,768,326
Effective search space: 974638944
Effective search space used: 974638944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.1 bits)