RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026451
(238 letters)
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 67.5 bits (166), Expect = 6e-15
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 23 EFVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEM----LTSDNRYIMR- 77
++VP E+ N L DLP Q+++Q+D G +++ GE T R+
Sbjct: 2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRIE 60
Query: 78 -----FEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAK 111
F + F LP ++D D I+ +L + +PKR
Sbjct: 61 RRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 62.7 bits (153), Expect = 1e-12
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTS----DNRYIMR------FE 79
W E H DLP KKE+VK++V+ + VSGE ++++ F
Sbjct: 48 WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 107
Query: 80 QMFPLPPNSDMDKISGKFDGELLYVTVPKRAKEES 114
+ F L ++ ++++ + +L VTVPK ++
Sbjct: 108 RRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP 142
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 60.7 bits (148), Expect = 3e-12
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLTSDNRYIMR------FEQMFP 83
E+ ++ DL F KE++K +V + + E ++ ++
Sbjct: 29 MYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIR 88
Query: 84 LPPNSDMD-KISGKFDGELLYVTVPKRAKE 112
LP N D +ISGK++ +L + +P
Sbjct: 89 LPYNVAKDAEISGKYENGVLTIRIPIAGTS 118
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 57.1 bits (138), Expect = 2e-10
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGE----MLTSDNRYIMR-------F 78
E ++ LP KE + L + + + M+T R I
Sbjct: 61 IIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEI 119
Query: 79 EQMFPLPPNSDMDKISGKFDGELLYVTVPKRAKEES 114
+ LP + S KF+ +L V +PK
Sbjct: 120 YRTIKLPATVKEENASAKFENGVLSVILPKAESSIK 155
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 53.1 bits (128), Expect = 7e-10
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 29 GWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSG--EMLTSDNRYIMR-FEQMFPLP 85
G + ++ + +D+ F +++ ++ G + ++G ++ YI R F + + LP
Sbjct: 1 GGSHTADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKHAARQDEHGYISRCFTRKYTLP 59
Query: 86 PNSDMDKISGKF--DGELLYVTVPK 108
P D ++S +G L V P
Sbjct: 60 PGVDPTQVSSSLSPEG-TLTVEAPM 83
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 52.9 bits (127), Expect = 1e-09
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 31 TEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSG--EMLTSDNRYIMR-FEQMFPLPPN 87
D +L+D+ F E++ ++V ++ V E ++ +I R F + + LPP
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVV-GDHVEVHARHEERPDEHGFIAREFHRRYRLPPG 65
Query: 88 SDMDKISGKF--DGELLYVTVPKRAKEESTEQP 118
D ++ +G +L + + + S P
Sbjct: 66 VDPAAVTSALSPEG-VLSIQATPASAQASLPSP 97
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 54.6 bits (131), Expect = 2e-09
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 26 PSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSG--EMLTSDNRYIMR-FEQMF 82
S + + + +D+ F E++K++V I V G E ++ +I R F + +
Sbjct: 64 GLSEMRLEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEHGFISREFHRKY 122
Query: 83 PLPPNSDMDKISGKF--DGELLYVTVPKRAKE--------ESTEQPSLPAS 123
+P + D I+ DG +L V P++ E+P++ A+
Sbjct: 123 RIPADVDPLTITSSLSSDG-VLTVNGPRKQVSGPERTIPITREEKPAVTAA 172
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 52.1 bits (125), Expect = 2e-09
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 31 TEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSG--EMLTSDNRYIMR-FEQMFPLPPN 87
+ + + +D+ F E++K++V I V G E ++ +I R F + + +P +
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 60
Query: 88 SDMDKISGKF--DGELLYVTVPKRAKEE 113
D I+ DG +L V P++
Sbjct: 61 VDPLTITSSMSSDG-VLTVNGPRKQVSG 87
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 50.2 bits (120), Expect = 1e-08
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 31 TEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSG--EMLTSDNRYIMR-FEQMFPLPPN 87
D + + +D+ F E + ++V + + G D+ YI R F + + LP N
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQ-EDFVEIHGKHNERQDDHGYISREFHRRYRLPSN 66
Query: 88 SDMDKISGKF--DGELLYVTVPKRAKEE 113
D +S DG +L + PK
Sbjct: 67 VDQSALSCSLSADG-MLTFSGPKIPSGV 93
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 38.7 bits (89), Expect = 8e-04
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 30 WTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLT-----SDNRYIMR-FEQMFP 83
H L P F + VK+ + V G + + R F + F
Sbjct: 229 EDGSKKIHLELKVDPHFAPKDVKVWAKG-NKVYVHGVTGKEEKTENASHSEHREFYKAFV 287
Query: 84 LPPNSDMDKISGKFDGELLYVTVPK 108
P D K + L+ V P
Sbjct: 288 TPEVVDASKTQAEIVDGLMVVEAPL 312
Score = 37.9 bits (87), Expect = 0.002
Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 6/124 (4%)
Query: 32 EDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGEMLT-SDNRYIMR-FEQMFPLPPNSD 89
+ + ++ +FK E++ ++ D + V + + + + PLPP+ D
Sbjct: 109 DGRLHFKVYFNVKNFKAEEITIKAD-KNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVD 167
Query: 90 MDKISGKF--DGELLYVTVPKRAKEESTEQPSLPASASGENEQQILHRNDDIPENVVEES 147
+ I D +L + P + S + + + + + +E
Sbjct: 168 RNHIQATITTDD-VLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIV 226
Query: 148 NDHQ 151
Sbjct: 227 TAED 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 36/269 (13%), Positives = 77/269 (28%), Gaps = 106/269 (39%)
Query: 17 NNPIVKEFV-----PSSGW-----------TEDSNGHY------LLVDLPDFKKEQVK-- 52
+V++FV + + Y L D F K V
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 53 ----------LQVDSSGNITVSGEM-------LTSDNRYIMRFEQMFPLPPNSDMDKISG 95
L++ + N+ + G + + D + K+
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALD---VCLSY------------KVQC 178
Query: 96 KFDGELLYVTVPKRAKEESTEQPSLPASASGENEQQILHRNDDIPENVVEESNDHQMREG 155
K D ++ ++ + E+ L E Q++L++ D N +
Sbjct: 179 KMDFKIFWLNLKNCNSPETV----L------EMLQKLLYQID---------PNWTSRSDH 219
Query: 156 DDDRACQTNN-KEKKSNKSEKDSCVDSFGEDFLRKWGNEPSHPFERGMKILR--RNKGII 212
+ + ++ + + L+ S P+E + +L +N
Sbjct: 220 SSNIKLRIHSIQAELRR--------------LLK------SKPYENCLLVLLNVQNAKAW 259
Query: 213 ITAVLAFSLG--VLL-SRKFGSADHIDSD 238
AF+L +LL +R D + +
Sbjct: 260 ----NAFNLSCKILLTTRFKQVTDFLSAA 284
Score = 31.7 bits (71), Expect = 0.24
Identities = 26/188 (13%), Positives = 54/188 (28%), Gaps = 44/188 (23%)
Query: 64 SGEMLTSDNRYIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAKEESTEQPSLPAS 123
+GE + FE F + D K ++ + K +
Sbjct: 11 TGEHQYQYKDILSVFEDAF----VDNFD---CKDVQDMPKSILSKEEIDHIIMSKD---- 59
Query: 124 ASGENEQQ-------ILHRNDDIPENVVEESND-------HQMREGDDDRACQTNNKEKK 169
+L + +++ + VEE ++ + T ++
Sbjct: 60 ----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 170 SNKSEKDSCVDSFGEDFL-RKWGNEPSHPFERGMKILRRNKGIIIT-------AVLAFSL 221
++ D F + + R +P + + LR K ++I +A
Sbjct: 116 RDRLYND--NQVFAKYNVSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD- 169
Query: 222 GVLLSRKF 229
V LS K
Sbjct: 170 -VCLSYKV 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.013
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 20/95 (21%)
Query: 57 SSGNITVSGEMLTSDNRYIM------RFEQMFPLPPN---SDMDKIS-----GKFDGELL 102
S G++ +L + + +F ++ P P +D + + GKF L
Sbjct: 12 SHGSLEHV--LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF---LG 66
Query: 103 YVTVPKRAKEESTEQPSLPASASGENEQQILHRND 137
YV+ + L E E L ND
Sbjct: 67 YVSSLVEPSKVGQFDQVL-NLCLTEFENCYLEGND 100
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces
cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Length = 125
Score = 31.4 bits (71), Expect = 0.097
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 61 ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
+ ++G++L + + RF Q+F L P+ +
Sbjct: 82 VMITGDLLIDEEQNPQRFSQVFHLIPDGN 110
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2
PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A
1jb4_A 1jb2_A 1qma_A
Length = 127
Score = 29.1 bits (65), Expect = 0.59
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 61 ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
V G++ ++ IM F QMF L +D
Sbjct: 83 SMVVGQLKADEDP-IMGFHQMFLLKNIND 110
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural
genomics consortium, SGC, transport protein; 1.60A
{Cryptosporidium parvum} SCOP: d.17.4.2
Length = 129
Score = 28.4 bits (63), Expect = 1.0
Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 61 ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
+ V+G++ D + ++F Q+F L P+ +
Sbjct: 87 VFVTGDVRIDDGQP-LKFSQVFNLMPSGN 114
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 27.9 bits (63), Expect = 2.9
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 94 SGKFDGELLYVTVPKRAKEEST----EQP 118
+GKF E++ VTV + + + E+
Sbjct: 196 AGKFGNEVIPVTVTVKGQPDVVVKEDEEY 224
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET:
EPE; 2.74A {Drosophila melanogaster}
Length = 120
Score = 26.7 bits (59), Expect = 3.1
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 61 ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
+ V+GE+ RF Q F L S
Sbjct: 80 VQVTGELSNDGQPM-RRFTQTFVLAAQSP 107
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 154
Score = 27.3 bits (60), Expect = 3.5
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 61 ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
+ V+G + + F Q L
Sbjct: 114 LNVAGAVTVDGDS-KRAFTQTLLLGVEDG 141
>3q90_A RAS GTPase-activating protein-binding protein 1; structural
genomics, structural genomics consortium, SGC, NT (A+B
proteins); 1.70A {Homo sapiens}
Length = 140
Score = 26.8 bits (59), Expect = 4.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 61 ITVSGEMLTSDNRYIMRFEQMFPLPPNSDMDK 92
+ V G + ++ + RF Q F L P +
Sbjct: 93 VQVMGLLSNNNQA-LRRFMQTFVLAPEGSVAN 123
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_A
Length = 140
Score = 26.1 bits (57), Expect = 6.9
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 61 ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
+ + G + N+ F Q F L +
Sbjct: 93 VVICGSVKFEGNK-QRDFNQNFILTAQAS 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.376
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,550,147
Number of extensions: 201593
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 26
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.5 bits)