RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026451
         (238 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 51.3 bits (122), Expect = 5e-09
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 24  FVPSSGWTEDSNGHYLLVDLPDFKKEQVKLQVDSSGNITVSGE----------MLTSDNR 73
                 W E    H    DLP  KKE+VK++V+    + VSGE                R
Sbjct: 41  ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER 100

Query: 74  YIMRFEQMFPLPPNSDMDKISGKFDGELLYVTVPKRAKEES 114
              +F + F L  ++ ++++    +  +L VTVPK   ++ 
Sbjct: 101 SSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP 141


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 44.6 bits (105), Expect = 7e-07
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 32  EDSNGHYLLVDLPDFKKEQVKLQVDSSG---NITVSGEMLTSDNRYIMR-------FEQM 81
           E      ++  LP   KE + L             S  M+T   R I           + 
Sbjct: 17  EGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRT 76

Query: 82  FPLPPNSDMDKISGKFDGELLYVTVPKRAKEE 113
             LP     +  S KF+  +L V +PK     
Sbjct: 77  IKLPATVKEENASAKFENGVLSVILPKAESSI 108


>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 117

 Score = 27.5 bits (61), Expect = 0.64
 Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 61  ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
           + V+G++   D +  ++F Q+F L P+ +
Sbjct: 77  VFVTGDVRIDDGQ-PLKFSQVFNLMPSGN 104


>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 121

 Score = 27.5 bits (61), Expect = 0.74
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 61  ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
           + ++G++L  + +   RF Q+F L P+ +
Sbjct: 79  VMITGDLLIDEEQNPQRFSQVFHLIPDGN 107


>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 125

 Score = 27.1 bits (60), Expect = 1.0
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 61  ITVSGEMLTSDNRYIMRFEQMFPLPPNSD 89
             V G++   ++  IM F QMF L   +D
Sbjct: 81  SMVVGQLKADEDP-IMGFHQMFLLKNIND 108


>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 294

 Score = 25.9 bits (57), Expect = 5.1
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 16/59 (27%)

Query: 166 KEKKSNKSEKDSCVDSFGEDFLRKWGNEPSHPFERGMKILRR---NKGIIITAVLAFSL 221
                   EK+  +          +  E   P +R  ++L+    NKG      + FSL
Sbjct: 10  SHNLPPMDEKEMALYKL-------YRPERVTPKKRSAELLKEPRLNKG------MGFSL 55


>d1clca2 b.1.18.2 (A:35-134) CelD cellulase, N-terminal domain
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 100

 Score = 24.4 bits (53), Expect = 7.7
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 183 GEDFLRKWGNEPSHPFE 199
           G  +L   G   S  F+
Sbjct: 83  GTYYLAVPGVGKSVNFK 99


>d1g5ga1 f.12.1.1 (A:33-66,A:224-454) Head and neck region of the
           ectodomain of NDV fusion glycoprotein {Newcastle disease
           virus [TaxId: 11176]}
          Length = 265

 Score = 25.3 bits (55), Expect = 7.9
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 90  MDKISGKFDGELLYVTVPKRAKEESTEQPSLPAS 123
           ++ +S           VPK   +  +    L  S
Sbjct: 114 LETLSVSTTKGFASALVPKVVTQVGSVIEELDTS 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 869,991
Number of extensions: 39768
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 11
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)