BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026452
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 6/181 (3%)
Query: 1 MGTVVTIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLV-GSDFVGDIPLYQK 59
+GT++T+ R EG +L+NG++AGL RQ + +RIGLYD VK F GS+ G + +
Sbjct: 51 LGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSR 107
Query: 60 IFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWT 119
+ A TGA+A+ VA PTD+VKVR QA+ + G RRY ++AY TI R+EG+ LW
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG--RRYQSTVEAYKTIAREEGIRGLWK 165
Query: 120 GLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDV 179
G PN+ARNAIVN AEL +YD +K+T+LK TD++ H + GAG I SP+DV
Sbjct: 166 GTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDV 225
Query: 180 V 180
V
Sbjct: 226 V 226
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 6 TIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFV-GDIPLYQKIFAAL 64
TIAREEG+ LW G + R I + YD +K L+ ++ + D+P + +A
Sbjct: 153 TIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCH--FTSAF 210
Query: 65 LTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPN 124
G V+A+P D+VK R + +Y+ A T++R+EG A + G P+
Sbjct: 211 GAGFCTTVIASPVDVVKTRYM------NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPS 264
Query: 125 IARNAIVNAAELASYDQVKETIL 147
R N +Y+Q+K ++
Sbjct: 265 FLRLGSWNVVMFVTYEQLKRALM 287
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 59 KIFAALLTGAIAIVVANPTDLVKVRLQAEGK----LPSGVPRRYYGALDAYCTIVRQEGL 114
K A IA ++ P D KVRLQ +G+ + + +Y G L T+VR EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 115 GALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIG 174
+L+ GL + R + + YD VK+ K I + +LAG G AV +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAVAVA 122
Query: 175 SPIDVV 180
P DVV
Sbjct: 123 QPTDVV 128
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 10/146 (6%)
Query: 4 VVTIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAA 63
VV I +E+G + W G +A + R L D K +G V + + FA
Sbjct: 57 VVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAG 114
Query: 64 LL-----TGAIAIVVANPTDLVKVRLQAE-GKLPSGVPRRYYGALDAYCTIVRQEGLGAL 117
L GA ++ P D + RL A+ GK R + G + I + +GL L
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCITKIFKSDGLRGL 172
Query: 118 WTGLGPNIARNAIVNAAELASYDQVK 143
+ G ++ I AA YD K
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAK 198
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 4 VVTIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAA 63
+ I + +GL L+ G + IY G+YD K L V I + + A
Sbjct: 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSW--MIAQ 217
Query: 64 LLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGP 123
+T A+A +V+ P D V+ R+ + G Y G +D + I + EG A + G
Sbjct: 218 TVT-AVAGLVSYPFDTVRRRMMMQSG-RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWS 275
Query: 124 NIARNAIVNAAELASYDQVKETI 146
N+ R + A L YD++K+ +
Sbjct: 276 NVLR-GMGGAFVLVLYDEIKKFV 297
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 54 IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPS-GVPRRYYGALDAYCTIVRQE 112
+ + A + AI+ P + VK+ LQ + ++Y G +D I +++
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 113 GLGALWTGLGPNIARNAIVNAAELASYDQVKETIL----KIPGFTDNIFTHILAGLGAGL 168
G + W G N+ R A A D+ K+ L + F ++ +G AG
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124
Query: 169 FAVCIGSPID 178
++C P+D
Sbjct: 125 TSLCFVYPLD 134
>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
Length = 403
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 65 LTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPN 124
LTG +A + +PT K L AEGK P+ + A+DA T V+++ + LG N
Sbjct: 165 LTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENLGDN 224
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 30 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 85
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 30 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 85
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.144 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,247,191
Number of Sequences: 62578
Number of extensions: 240197
Number of successful extensions: 814
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 9
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)