Query 026452
Match_columns 238
No_of_seqs 150 out of 1866
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 13:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.7E-45 5.9E-50 300.9 21.9 224 2-234 52-286 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.1E-45 3.7E-50 301.4 18.8 230 2-234 55-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.1E-32 3.7E-37 224.6 16.8 181 54-234 5-201 (297)
4 2lck_A Mitochondrial uncouplin 100.0 6.5E-32 2.2E-36 220.5 15.0 174 59-234 4-192 (303)
5 2l5r_A Antimicrobial peptide a 46.5 21 0.00072 16.1 2.4 21 4-25 2-22 (26)
6 1y9i_A Low temperature require 34.5 59 0.002 23.5 4.4 45 29-73 111-159 (178)
7 1rfz_A Hypothetical protein AP 21.9 1.2E+02 0.004 21.7 4.1 44 29-72 113-160 (168)
8 3f2e_A SIRV coat protein; four 21.8 64 0.0022 19.7 2.3 33 97-129 7-43 (100)
9 3tgu_G UQCRQ, mitochondrial ub 18.0 1.9E+02 0.0064 17.8 4.3 37 113-149 33-69 (81)
10 1tlq_A Hypothetical protein YP 17.3 1.9E+02 0.0063 21.1 4.3 42 33-74 116-160 (189)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-45 Score=300.90 Aligned_cols=224 Identities=39% Similarity=0.601 Sum_probs=200.1
Q ss_pred hHHHHHHHhhcHHHHhhchHHHHHHHHhhhhhhhhchHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 026452 2 GTVVTIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVK 81 (238)
Q Consensus 2 ~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~vk 81 (238)
+++++|+++||++|||||+.+++++.+|.++++|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|+||
T Consensus 52 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vk 129 (303)
T 2lck_A 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVK 129 (303)
T ss_dssp HHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6899999999999999999999999999999999999999999864322 46788999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcccCHHHHHHHHHHhhchhhhhcchhHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHH
Q 026452 82 VRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHIL 161 (238)
Q Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 161 (238)
+|+|++... .....|.+.++++++|+++||+++||||+.+++++.+|..+++|.+||.+++.+.+.....++...+++
T Consensus 130 trlq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~ 207 (303)
T 2lck_A 130 VRFQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFT 207 (303)
T ss_dssp HHHHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHH
T ss_pred HHHhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHH
Confidence 999998642 233478999999999999999999999999999999999999999999999988766544567788999
Q ss_pred HHHHHHHHHHhhcchhhHHHhhhhccccccCCCCCCCchhHHHHHhhccccchhhhcc-cch----------hHhhHHHh
Q 026452 162 AGLGAGLFAVCIGSPIDVVGFLSPLLLSAKNNSLAAPNISISLYRLTTKVCCLLLLKK-QPA----------YVRNYEEC 230 (238)
Q Consensus 162 ~~~~a~~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~----------~~~~ye~~ 230 (238)
+|++||++++++++|+|+||+|||++.. ..|++.++++.++.+++|+.++|+| .|. +|..||.+
T Consensus 208 ~g~~ag~~~~~~~~P~dvvktrlq~~~~-----~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~ 282 (303)
T 2lck_A 208 SAFGAGFCTTVIASPVDVVKTRYMNSAL-----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCS-----SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhccc-----cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999998643 2477899999999999999999999 554 78899999
Q ss_pred hhhh
Q 026452 231 AYLI 234 (238)
Q Consensus 231 k~~~ 234 (238)
|..+
T Consensus 283 k~~l 286 (303)
T 2lck_A 283 KRAL 286 (303)
T ss_dssp HSCC
T ss_pred HHHH
Confidence 8764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-45 Score=301.36 Aligned_cols=230 Identities=19% Similarity=0.243 Sum_probs=194.1
Q ss_pred hHHHHHHHhhcHHHHhhchHHHHHHHHhhhhhhhhchHHHHHhh-ccCCCCCC--CcHHHHHHHHHHHHHHHHHhcCcHH
Q 026452 2 GTVVTIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFL-VGSDFVGD--IPLYQKIFAALLTGAIAIVVANPTD 78 (238)
Q Consensus 2 ~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~--~~~~~~~~~g~~ag~~~~~~~~Pld 78 (238)
+++++|+++||++|||||+.+++++.+|.++++|.+||.+++.+ ...+.... .+....+++|++||+++.++++|+|
T Consensus 55 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld 134 (297)
T 1okc_A 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLD 134 (297)
T ss_dssp HHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 78999999999999999999999999999999999999999954 32222112 2356789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCcccCHHHHHHHHHHhhchhhhhcchhHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCChhHH
Q 026452 79 LVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFT 158 (238)
Q Consensus 79 ~vk~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 158 (238)
+||+|+|++... ......|.+.++++++|+++||+++||||+.+++++.+|..+++|.+||.+++.+.+. ...+...
T Consensus 135 ~vktrlq~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~ 211 (297)
T 1okc_A 135 FARTRLAADVGK-GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIV 211 (297)
T ss_dssp HHHHHHHHCCCS-STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHH
T ss_pred HHHHHHhccccC-CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHH
Confidence 999999998542 2233578999999999999999999999999999999999999999999999976543 2356778
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHhhhhccccccCCCCCCCchhHHHHHhhccccchhhhcc-cch---------hHhhHH
Q 026452 159 HILAGLGAGLFAVCIGSPIDVVGFLSPLLLSAKNNSLAAPNISISLYRLTTKVCCLLLLKK-QPA---------YVRNYE 228 (238)
Q Consensus 159 ~~~~~~~a~~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~---------~~~~ye 228 (238)
.+++|++||++++++++|+|+||+|||++.........|++.++++.++.++||+.++|+| .|. +|.+||
T Consensus 212 ~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye 291 (297)
T 1okc_A 212 SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYD 291 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHH
Confidence 8999999999999999999999999998755433345688899999999999999999999 555 677899
Q ss_pred Hhhhhh
Q 026452 229 ECAYLI 234 (238)
Q Consensus 229 ~~k~~~ 234 (238)
.+|..+
T Consensus 292 ~~k~~l 297 (297)
T 1okc_A 292 EIKKFV 297 (297)
T ss_dssp TC----
T ss_pred HHHhhC
Confidence 988753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-32 Score=224.57 Aligned_cols=181 Identities=17% Similarity=0.238 Sum_probs=152.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCC-CCCCcccCHHHHHHHHHHhhchhhhhcchhHHHHHHHHHH
Q 026452 54 IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPS-GVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVN 132 (238)
Q Consensus 54 ~~~~~~~~~g~~ag~~~~~~~~Pld~vk~~~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~l~~~~~~~ 132 (238)
.+.+..+++|++||+++.++++|+|++|+|+|++..... .....|++.++++++++++||+++||||+.+++++.+|..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456789999999999999999999999999999864211 1234689999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHHHHHHhhcchhhHHHhhhhccccccCCCCCCCchhHHHHHhh
Q 026452 133 AAELASYDQVKETILKIPGFTD----NIFTHILAGLGAGLFAVCIGSPIDVVGFLSPLLLSAKNNSLAAPNISISLYRLT 208 (238)
Q Consensus 133 ~~~~~~y~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~ 208 (238)
+++|.+||.+++.+.+..+... +....+++|++||++++++++|+|+||+|||++.........|++.++.+.++.
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999996544322211 346789999999999999999999999999987644333456788999999999
Q ss_pred ccccchhhhcc-cch----------hHhhHHHhhhhh
Q 026452 209 TKVCCLLLLKK-QPA----------YVRNYEECAYLI 234 (238)
Q Consensus 209 ~~~g~~~~~~g-~~~----------~~~~ye~~k~~~ 234 (238)
+++|+.++|+| .|. +|..||.+|..+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 444 788999998753
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.98 E-value=6.5e-32 Score=220.47 Aligned_cols=174 Identities=26% Similarity=0.316 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCC----CCCCcccCHHHHHHHHHHhhchhhhhcchhHHHHHHHHHHhh
Q 026452 59 KIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPS----GVPRRYYGALDAYCTIVRQEGLGALWTGLGPNIARNAIVNAA 134 (238)
Q Consensus 59 ~~~~g~~ag~~~~~~~~Pld~vk~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~~~y~G~~~~l~~~~~~~~~ 134 (238)
.+++|++||+++.++++|+|++|+|+|++..... .....|++.++++++++++||+++||||+.+++++.+|..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999864221 123468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHhhcchhhHHHhhhhccccccCCCCCCCchhHHHHHhhccccch
Q 026452 135 ELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDVVGFLSPLLLSAKNNSLAAPNISISLYRLTTKVCCL 214 (238)
Q Consensus 135 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 214 (238)
+|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|+||+|||++... .....|++..+.+.++.+++|+.
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-GGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-CCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-CCCCCCCCHHHHHHHHHHhcChh
Confidence 99999999999876422 46778899999999999999999999999999987543 23346788899999999889999
Q ss_pred hhhcc-cch----------hHhhHHHhhhhh
Q 026452 215 LLLKK-QPA----------YVRNYEECAYLI 234 (238)
Q Consensus 215 ~~~~g-~~~----------~~~~ye~~k~~~ 234 (238)
++|+| .|. +|.+||.+|..+
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l 192 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 444 788999998765
No 5
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=46.52 E-value=21 Score=16.12 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=15.4
Q ss_pred HHHHHHhhcHHHHhhchHHHHH
Q 026452 4 VVTIAREEGLWALWNGVIAGLH 25 (238)
Q Consensus 4 ~~~i~~~eG~~glyrG~~~~~~ 25 (238)
+++|++ .|+.+|-+|..+.+.
T Consensus 2 lkeifk-aglgslvkgiaahva 22 (26)
T 2l5r_A 2 LKEIFK-AGLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhHHHHHHHHHHHHh
Confidence 566766 688888888876653
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=34.46 E-value=59 Score=23.48 Aligned_cols=45 Identities=22% Similarity=0.171 Sum_probs=29.1
Q ss_pred hhhhhhhhchHHHHHh----hccCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 026452 29 IYGGLRIGLYDPVKTF----LVGSDFVGDIPLYQKIFAALLTGAIAIVV 73 (238)
Q Consensus 29 ~~~~~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~ag~~~~~~ 73 (238)
....+.|..||..|-- +.+...++-..++-.++||..|+++..++
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4556677778877643 22222334567889999999998866443
No 7
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=21.85 E-value=1.2e+02 Score=21.70 Aligned_cols=44 Identities=18% Similarity=0.063 Sum_probs=28.7
Q ss_pred hhhhhhhhchHHHHHh----hccCCCCCCCcHHHHHHHHHHHHHHHHH
Q 026452 29 IYGGLRIGLYDPVKTF----LVGSDFVGDIPLYQKIFAALLTGAIAIV 72 (238)
Q Consensus 29 ~~~~~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~ag~~~~~ 72 (238)
..+.+.|..||..|-- +.+...++-..++-.++||..|+++..+
T Consensus 113 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 160 (168)
T 1rfz_A 113 SIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRL 160 (168)
T ss_dssp TTHHHHHHHHHHHCCTHHHHHHCSSSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 3455677777777642 2323334456788999999999886643
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.79 E-value=64 Score=19.66 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=23.6
Q ss_pred cccCHHHHHHHHHHhhch----hhhhcchhHHHHHHH
Q 026452 97 RYYGALDAYCTIVRQEGL----GALWTGLGPNIARNA 129 (238)
Q Consensus 97 ~~~~~~~~~~~i~~~~G~----~~~y~G~~~~l~~~~ 129 (238)
++++.-+-+..++.+.|+ +..|.|+...+.|..
T Consensus 7 kftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 677777777777777775 457888888777653
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.96 E-value=1.9e+02 Score=17.84 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=27.3
Q ss_pred chhhhhcchhHHHHHHHHHHhhHHHHHHHHHHHHHcC
Q 026452 113 GLGALWTGLGPNIARNAIVNAAELASYDQVKETILKI 149 (238)
Q Consensus 113 G~~~~y~G~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 149 (238)
|+...+|-+...++..+|...+.+.+|+..++.....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566777888899999999999998877544
No 10
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=17.27 E-value=1.9e+02 Score=21.05 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=26.2
Q ss_pred hhhhchHHHHHh-hccCCC--CCCCcHHHHHHHHHHHHHHHHHhc
Q 026452 33 LRIGLYDPVKTF-LVGSDF--VGDIPLYQKIFAALLTGAIAIVVA 74 (238)
Q Consensus 33 ~~f~~~~~~~~~-~~~~~~--~~~~~~~~~~~~g~~ag~~~~~~~ 74 (238)
..|+-+|..|.= +.+.+. .+-.+++-.+++|.+|++++.+..
T Consensus 116 tNfGylDk~KpGIi~~Ld~k~~~v~tFLDDiVgaiaAaaaSRlah 160 (189)
T 1tlq_A 116 TNFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRIAH 160 (189)
T ss_dssp HHHHHHHHSCCTHHHHTSSSCSCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred eecccccccCcceeccccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 456666665522 222221 125789999999999998887664
Done!