BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026453
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Query: 121 YLTELKNLTLKILDLMAKALRMDPNDM-KEL--FENGMQSLRMNYYPPCPQPEQVLGFKP 177
Y L+ L K+ ++ L ++P+ + KE+ E + +++NYYP CPQPE LG +
Sbjct: 171 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEA 230
Query: 178 HSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRA 237
H+D S LT +L N + GLQ+ +GKW K +PD++++++GD LEI SNG Y++I HR
Sbjct: 231 HTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRG 289
Query: 238 L 238
L
Sbjct: 290 L 290
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 26 LTTVPPRYVRPE-----IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWG 80
+ ++P Y+RP+ I+ + Q+P ID+ + S D EK+ C E
Sbjct: 14 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD----EKIRENCIE-E 68
Query: 81 FFQQKLDWG 89
+ LDWG
Sbjct: 69 LKKASLDWG 77
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Query: 121 YLTELKNLTLKILDLMAKALRMDPNDM-KEL--FENGMQSLRMNYYPPCPQPEQVLGFKP 177
Y L+ L K+ ++ L ++P+ + KE+ E + +++NYYP CPQPE LG +
Sbjct: 172 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEA 231
Query: 178 HSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRA 237
H+D S LT +L N + GLQ+ +GKW K +PD++++++GD LEI SNG Y++I HR
Sbjct: 232 HTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRG 290
Query: 238 L 238
L
Sbjct: 291 L 291
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 26 LTTVPPRYVRPE-----IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWG 80
+ ++P Y+RP+ I+ + Q+P ID+ + S D EK+ C E
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD----EKIRENCIE-E 69
Query: 81 FFQQKLDWG 89
+ LDWG
Sbjct: 70 LKKASLDWG 78
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 121 YLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSL----RMNYYPPCPQPEQVLGFK 176
Y L+ L K+ ++ L ++P+ +++ G++ L ++NYYP CPQPE LG +
Sbjct: 172 YAKCLRLLATKVFKALSVGLGLEPDRLEKEV-GGLEELLLQXKINYYPKCPQPELALGVE 230
Query: 177 PHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHR 236
H+D S LT +L N + GLQ+ +GKW K +PD+++ ++GD LEI SNG Y++I HR
Sbjct: 231 AHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHR 289
Query: 237 AL 238
L
Sbjct: 290 GL 291
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 26 LTTVPPRYVRPE-----IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWG 80
+ ++P Y+RP+ I+ + Q+P ID+ + S D EK+ C E
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD----EKIRENCIE-E 69
Query: 81 FFQQKLDWG 89
+ LDWG
Sbjct: 70 LKKASLDWG 78
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 121 YLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQ---SLRMNYYPPCPQPEQVLGFKP 177
+ L+ L ++LDL+ + L ++ +K F +++ YPPCP+P+ + G +
Sbjct: 117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176
Query: 178 HSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRA 237
H+D + +L Q +++ GLQ+ KDG+W V P +++VN+GD LE+ +NG Y+++ HR
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRV 236
Query: 238 L 238
+
Sbjct: 237 I 237
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 117 DLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFK 176
D+ L K+L+ +A L+++ + K ++G LR+ +YPP P+ +
Sbjct: 130 DVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAG 189
Query: 177 PHSDGSVLTILLQINEMDGLQI-KKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEH 235
H D + +T+LL E GL++ +DG+W + P P L++N+GD LE +N + H
Sbjct: 190 AHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVH 248
Query: 236 RAL 238
R +
Sbjct: 249 RVV 251
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 158 LRMNYYPPCPQPEQVLGFKP--HSDGSVLTILLQINEMDGLQIK-KDGKWFAVKPLPDAL 214
LR+ +YPP E+ + H D +++T+L NE GLQ+K KDG W V +
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNI 210
Query: 215 IVNVGDVLEIFSNGTYRNIEHRAL 238
I+N+GD L+ S+G + + HR +
Sbjct: 211 IINIGDXLQEASDGYFPSTSHRVI 234
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 116 DDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF--ENGMQSLRMNYYPPC-PQPEQV 172
D E Y ++ L+ +L A AL + N F ++ + S+ + YP P PE
Sbjct: 140 DFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAA 199
Query: 173 ---------LGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLE 223
L F+ H D S++T+L Q N + LQ++ + ++ ++N G +
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMA 258
Query: 224 IFSNGTYRNIEHR 236
+N Y+ HR
Sbjct: 259 HLTNNYYKAPIHR 271
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 116 DDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELF--ENGMQSLRMNYYPPC-PQPEQV 172
D E Y ++ L+ +L A AL + N F ++ + S+ + YP P PE
Sbjct: 140 DFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAA 199
Query: 173 ---------LGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLE 223
L F+ H D S++T+L Q N + LQ++ + ++ ++N G +
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMA 258
Query: 224 IFSNGTYRNIEHR 236
+N Y+ HR
Sbjct: 259 HLTNNYYKAPIHR 271
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 7 VIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDD 66
VI L E +LE A +T++ ++ IR DS Q+PV ++ +L +
Sbjct: 80 VINKDLAEEGVLEEAEFYNITSLI------KLVKDKIRERDSKTSQVPVKHVYRVLQCQE 133
Query: 67 SELEKLDHACKEWGFFQQKLDWGYGF 92
EL ++ + F+Q + G +
Sbjct: 134 EELTQMVSTMSDGWKFEQLVSIGSSY 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,980,994
Number of Sequences: 62578
Number of extensions: 270981
Number of successful extensions: 767
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 16
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)