Query 026454
Match_columns 238
No_of_seqs 134 out of 694
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 2E-52 4.3E-57 372.9 19.8 201 19-237 45-245 (318)
2 COG5058 LAG1 Protein transport 100.0 5.6E-49 1.2E-53 347.0 16.3 200 18-237 112-314 (395)
3 KOG1608 Protein transporter of 100.0 2.7E-36 5.9E-41 264.0 12.7 198 16-233 73-270 (374)
4 smart00724 TLC TRAM, LAG1 and 100.0 4.6E-31 9.9E-36 223.5 12.6 156 73-236 1-159 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 99.9 1.3E-24 2.7E-29 181.5 11.7 151 74-235 1-158 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.4 5.7E-07 1.2E-11 63.5 6.1 43 14-56 20-62 (65)
7 KOG4474 Uncharacterized conser 96.1 0.039 8.4E-07 48.7 8.9 140 73-226 44-187 (253)
8 KOG4561 Uncharacterized conser 55.8 8 0.00017 34.9 2.0 76 155-230 139-216 (281)
9 PRK13454 F0F1 ATP synthase sub 35.5 1.7E+02 0.0038 24.2 7.0 27 26-52 34-60 (181)
10 PRK08476 F0F1 ATP synthase sub 26.6 2.5E+02 0.0054 22.2 6.2 28 25-52 9-36 (141)
11 PRK13453 F0F1 ATP synthase sub 24.3 3E+02 0.0066 22.5 6.5 32 21-52 16-47 (173)
12 PRK13461 F0F1 ATP synthase sub 24.3 2.9E+02 0.0062 22.1 6.3 31 22-52 4-34 (159)
13 PF11658 DUF3260: Protein of u 24.0 74 0.0016 31.1 3.1 83 79-185 40-122 (518)
14 PRK06231 F0F1 ATP synthase sub 20.0 1.5E+02 0.0033 25.2 4.0 28 25-52 50-77 (205)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-52 Score=372.90 Aligned_cols=201 Identities=48% Similarity=0.899 Sum_probs=188.2
Q ss_pred CcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccchhhhhhHHHHHHhhhhhhHHHHHHHHHhhhhhheec
Q 026454 19 AYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTYD 98 (238)
Q Consensus 19 ~~~Dl~~~~~~a~~~~i~R~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~k~~Kf~Es~w~~~~y~~~~~~g~~v~~~ 98 (238)
++.|.++..+++..++..|......+..|...+.+..+ +.+.+||+||+|+++||++++++|++++++
T Consensus 45 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------------~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~ 112 (318)
T KOG1607|consen 45 GASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTA------------DRRKKKFCESAWKFLYYLVSWIFGLYVMYH 112 (318)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcC------------chhhhhhHHHHHHHHHHHHHHHHhhhheec
Confidence 45799999999999999999888888888887765433 122399999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhhhcee
Q 026454 99 EPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIFRFAR 178 (238)
Q Consensus 99 ~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~l~~~~~l~f~e~rRkD~~~m~~HH~~Ti~Li~~SY~~n~~R 178 (238)
+||+.|++++|.| ||+++++.++|+||++|.|||.|+++.+ +.|++||||+||++||++|+.||.+||+.||+|
T Consensus 113 ~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~al-~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R 186 (318)
T KOG1607|consen 113 EPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFAL-FLDEKRKDFWEMVVHHVVTLILISLSYVFNFTR 186 (318)
T ss_pred chhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999 9999999999999999999999999985 789999999999999999999999999999999
Q ss_pred cceeeeeecccchhHHHHHHHhhhhccchhhhHHHhHHHHHHHHHHHHHHhhHhhhccc
Q 026454 179 VGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTR 237 (238)
Q Consensus 179 vG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl~s~~ 237 (238)
+|++|+++||+||++||++|++||.+.+.+|+.+|++|+.+|+++||+++|+++++||.
T Consensus 187 ~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~ 245 (318)
T KOG1607|consen 187 VGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTS 245 (318)
T ss_pred ccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999985
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.6e-49 Score=347.03 Aligned_cols=200 Identities=30% Similarity=0.540 Sum_probs=188.0
Q ss_pred CCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccchhhhhhHHHHHHhhhhhhHHHHHHHHHhhhhhhee
Q 026454 18 PAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSVTY 97 (238)
Q Consensus 18 p~~~Dl~~~~~~a~~~~i~R~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~k~~Kf~Es~w~~~~y~~~~~~g~~v~~ 97 (238)
.|+.|++++++++++++.+|..++..|.+|++..++++. ++|++||+||+|.++||++++.+|+|+++
T Consensus 112 KG~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Glyvmr 179 (395)
T COG5058 112 KGILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLYVMR 179 (395)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEEEEe
Confidence 467899999999999999999999999999999987764 58899999999999999999999999999
Q ss_pred cCC-CCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 026454 98 DEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYS--IFALMFWETRRADFGVSMGHHVATVILIVLSYIF 174 (238)
Q Consensus 98 ~~~-w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~l~~--~~~l~f~e~rRkD~~~m~~HH~~Ti~Li~~SY~~ 174 (238)
++| |+.|++.+|.. ||+..+|..+|.||++|+|||.+| ++. ++.|++||||+||+.||++|++||..||.+
T Consensus 180 ss~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY~f 253 (395)
T COG5058 180 SSPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSYVF 253 (395)
T ss_pred cCcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999 77799999998 999999999999999999999998 554 468999999999999999999999999999
Q ss_pred hceecceeeeeecccchhHHHHHHHhhhhccchhhhHHHhHHHHHHHHHHHHHHhhHhhhccc
Q 026454 175 RFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTR 237 (238)
Q Consensus 175 n~~RvG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl~s~~ 237 (238)
||+|+|+.|...||+||++|+.+|++||++. .+|+..|++|+.+|++.|+++. ++|+|+++
T Consensus 254 hftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln-~kIlw~vl 314 (395)
T COG5058 254 HFTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLN-LKILWSVL 314 (395)
T ss_pred HHHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999999999999999996 8899999999999999999776 57888764
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-36 Score=263.99 Aligned_cols=198 Identities=20% Similarity=0.395 Sum_probs=190.0
Q ss_pred CCCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccchhhhhhHHHHHHhhhhhhHHHHHHHHHhhhhhh
Q 026454 16 SYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSV 95 (238)
Q Consensus 16 ~~p~~~Dl~~~~~~a~~~~i~R~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~k~~Kf~Es~w~~~~y~~~~~~g~~v 95 (238)
.+.|++|++.+++|+++++++|+++||++++++.+|++++| .|..||+||+....||..+.+||.++
T Consensus 73 Y~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-------------~k~~kFnESgql~~Fy~~S~vwg~~i 139 (374)
T KOG1608|consen 73 YYYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-------------VKHSKFNESGQLVAFYLFSCVWGFYI 139 (374)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hhhhhhccCCeeeehhhHHhhhhhee
Confidence 56789999999999999999999999999999999999887 78999999999999999999999999
Q ss_pred eecCCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 026454 96 TYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIFR 175 (238)
Q Consensus 96 ~~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~l~~~~~l~f~e~rRkD~~~m~~HH~~Ti~Li~~SY~~n 175 (238)
+..|.+..|+++.|.| ||+.+|+..+|+||+.|+|||+|++++++|+..||+|....+.|-+..+..|+++|.+|
T Consensus 140 li~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYlln 214 (374)
T KOG1608|consen 140 LISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLN 214 (374)
T ss_pred eeecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecceeeeeecccchhHHHHHHHhhhhccchhhhHHHhHHHHHHHHHHHHHHhhHhh
Q 026454 176 FARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWIL 233 (238)
Q Consensus 176 ~~RvG~lVl~lHDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~p~~vl 233 (238)
+.|+|.+.+.+|.+++.+.++++++.+.+.+ .+.+|.+++.+|+..|+.....-|+
T Consensus 215 l~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaVl 270 (374)
T KOG1608|consen 215 LNRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAVL 270 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999966 5899999999999999988766554
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.97 E-value=4.6e-31 Score=223.54 Aligned_cols=156 Identities=36% Similarity=0.691 Sum_probs=145.9
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhheecCCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 026454 73 RKFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALM-FWETRR 151 (238)
Q Consensus 73 ~Kf~Es~w~~~~y~~~~~~g~~v~~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~l~~~~~l~-f~e~rR 151 (238)
+|++|+.||+++|+.+++.|.++++.++|++|+. .+ +|.++.++..+++|.+|+||++++++.+. +.+.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 4899999999999999999999999999988886 34 89999999999999999999999998765 689999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhceecceeeeeecccchhHHHHHHHhhhhccc--hhhhHHHhHHHHHHHHHHHHHHh
Q 026454 152 ADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAE--GIASLSFILFVLSWILLRLIYYP 229 (238)
Q Consensus 152 kD~~~m~~HH~~Ti~Li~~SY~~n~~RvG~lVl~lHDisDi~L~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~p 229 (238)
||.+||++||++|++++..||..|++|+|.+++++||+||++++++|++++.+.+ .+.+..+++|+++|+++|++.+|
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 67889999999999999999999
Q ss_pred hHhhhcc
Q 026454 230 FWILWST 236 (238)
Q Consensus 230 ~~vl~s~ 236 (238)
..++++.
T Consensus 153 ~~~~~~~ 159 (205)
T smart00724 153 FLILTVT 159 (205)
T ss_pred HHHHHHH
Confidence 9877654
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.92 E-value=1.3e-24 Score=181.47 Aligned_cols=151 Identities=28% Similarity=0.679 Sum_probs=134.0
Q ss_pred HhhhhhhHHHHHHHHHhhhhhheecCCCCCCccccccCCCCCCCCCcc---ccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026454 74 KFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQK---IKLKLKGVYMYAAGFYTYSIFALMFWETR 150 (238)
Q Consensus 74 Kf~Es~w~~~~y~~~~~~g~~v~~~~~w~~~~~~~w~~~~~~~~P~~~---~~~~~~~yYl~q~af~l~~~~~l~f~e~r 150 (238)
||+|+.+++++++.++++|++++.++| ++|.+ ||+.+ .+...+.++.+++||++++++.....+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 689999999999999999999999988 45554 44433 34578889999999999999987777888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhceecceeeeeecccchhHHHHHHHhhhh-cc-chhhhHHH--hHHHHHHHHHHHH
Q 026454 151 RADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYI-GA-EGIASLSF--ILFVLSWILLRLI 226 (238)
Q Consensus 151 RkD~~~m~~HH~~Ti~Li~~SY~~n~~RvG~lVl~lHDisDi~L~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~ 226 (238)
|+|+++|++||++|+.++..||..|+.|.|++++++||+||++++..|++++. +. +......+ ++|+++|+.+|++
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999 55 45667788 9999999999999
Q ss_pred HHhhHhhhc
Q 026454 227 YYPFWILWS 235 (238)
Q Consensus 227 ~~p~~vl~s 235 (238)
.+|+.+.+.
T Consensus 150 ~~~~~~~~~ 158 (198)
T PF03798_consen 150 LFPYLIYWV 158 (198)
T ss_pred HHHHHHHHH
Confidence 999877654
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.44 E-value=5.7e-07 Score=63.48 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=39.1
Q ss_pred CCCCCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026454 14 QESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGK 56 (238)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~i~R~~~~~~v~~pl~~~l~~~k 56 (238)
+.--.|++|++++++++++++++|++++++|++|+|++++++|
T Consensus 20 ~~Y~~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k 62 (65)
T PF08390_consen 20 GLYGKGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISK 62 (65)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445688999999999999999999999999999999998876
No 7
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.039 Score=48.69 Aligned_cols=140 Identities=18% Similarity=0.288 Sum_probs=89.0
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhheecCC-CCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026454 73 RKFNESAWKCVYFLTAELLALSVTYDEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRR 151 (238)
Q Consensus 73 ~Kf~Es~w~~~~y~~~~~~g~~v~~~~~-w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~l~~~~~l~f~e~rR 151 (238)
.||....=.++.-+++..++.+.+.+.| -.-|+..++.. .-.---+..+||.++.+.... .+++-
T Consensus 44 ~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~-------------~~~~l~~fS~gYfiyD~vDm~-~~~~s 109 (253)
T KOG4474|consen 44 KRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSL-------------SAYQLLLFSAGYFIYDLVDML-MNEQS 109 (253)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhh-------------hhHHHHHHHHHHHHHHHHHHH-hcchh
Confidence 4566655556666677777777666655 12222222111 112234567899999999864 56656
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhceecceeeeeecccchhHHHHHHHhhhhccchh---hhHHHhHHHHHHHHHHHH
Q 026454 152 ADFGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGI---ASLSFILFVLSWILLRLI 226 (238)
Q Consensus 152 kD~~~m~~HH~~Ti~Li~~SY~~n~~RvG~lVl~lHDisDi~L~~aK~~~y~~~~~~---~~~~F~~f~~~w~~~Rl~ 226 (238)
.+.+|.+.||++++.-.+..-..|=.--++....++.+++||||.=++.+-.+.++- -.+.-.+-.++++.+|++
T Consensus 110 ~~s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~ 187 (253)
T KOG4474|consen 110 ELSWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLI 187 (253)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 789999999999876554443333222245667789999999999999998775431 122333445678888874
No 8
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=55.80 E-value=8 Score=34.88 Aligned_cols=76 Identities=12% Similarity=0.240 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhceecceeeeeecccchhHHHHHHHhhhhccch-hhh-HHHhHHHHHHHHHHHHHHhh
Q 026454 155 GVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEG-IAS-LSFILFVLSWILLRLIYYPF 230 (238)
Q Consensus 155 ~~m~~HH~~Ti~Li~~SY~~n~~RvG~lVl~lHDisDi~L~~aK~~~y~~~~~-~~~-~~F~~f~~~w~~~Rl~~~p~ 230 (238)
.+|++||++.+..+...-...+-.-=.-.+++-..|-+|+.....+--++.+. ... +-=.+..++|+..|+..+|.
T Consensus 139 ~~fviHh~~s~~~v~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~ 216 (281)
T KOG4561|consen 139 IEFVIHHIASLVFVGCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPY 216 (281)
T ss_pred eeEEeeHHHHhhhheeeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHH
Confidence 58999999992222111111111111344566788999999998888877664 222 22345577999999997875
No 9
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.49 E-value=1.7e+02 Score=24.23 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026454 26 LPLFALYFPSVRFFLEKFVFEKVAKRW 52 (238)
Q Consensus 26 ~~~~a~~~~i~R~~~~~~v~~pl~~~l 52 (238)
++...+.+.++=+++.+++++|+.+-+
T Consensus 34 ~~~~lI~F~iL~~ll~k~l~~PI~~~l 60 (181)
T PRK13454 34 IFWLLVTLVAIYFVLTRVALPRIGAVL 60 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777778899999999875
No 10
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.55 E-value=2.5e+02 Score=22.25 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026454 25 VLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (238)
Q Consensus 25 ~~~~~a~~~~i~R~~~~~~v~~pl~~~l 52 (238)
..++-.+.+.++=+++.+++++|+.+-+
T Consensus 9 ~~~~qli~Flil~~~l~kfl~kPi~~~l 36 (141)
T PRK08476 9 LMLATFVVFLLLIVILNSWLYKPLLKFM 36 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666778889999998775
No 11
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.26 E-value=3e+02 Score=22.49 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=23.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026454 21 EDFAVLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (238)
Q Consensus 21 ~Dl~~~~~~a~~~~i~R~~~~~~v~~pl~~~l 52 (238)
-|....+.-++.+.++=+++.+++++|+.+-+
T Consensus 16 ~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l 47 (173)
T PRK13453 16 VEWGTVIVTVLTFIVLLALLKKFAWGPLKDVM 47 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777788888999998875
No 12
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=24.25 E-value=2.9e+02 Score=22.13 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026454 22 DFAVLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (238)
Q Consensus 22 Dl~~~~~~a~~~~i~R~~~~~~v~~pl~~~l 52 (238)
|....+.-.+.+.++=+++.+++++|+.+-+
T Consensus 4 ~~~~~~~~~inF~il~~iL~~f~~kpi~~~l 34 (159)
T PRK13461 4 NIPTIIATIINFIILLLILKHFFFDKIKAVI 34 (159)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555556666666778888999998875
No 13
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=24.01 E-value=74 Score=31.15 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhhhhheecCCCCCCccccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 026454 79 AWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSM 158 (238)
Q Consensus 79 ~w~~~~y~~~~~~g~~v~~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~l~~~~~l~f~e~rRkD~~~m~ 158 (238)
.|+-+=+.+....|+..++++.|+|.....|.. ..+-.. +.+=|++|+ .. -|.. |+|+
T Consensus 40 ~l~~~R~~iAipig~aLly~DswLPp~~rl~~q------~~ql~~--FS~~Yl~EL-------~~-Rfin------~~ml 97 (518)
T PF11658_consen 40 RLRRLRHWIAIPIGIALLYHDSWLPPFDRLWSQ------AGQLAG--FSFSYLLEL-------AG-RFIN------WQML 97 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH------HHHHhc--CCHHHHHHH-------HH-hcCC------HHHH
Confidence 445556678889999999999999999888764 111111 122244442 11 1222 5666
Q ss_pred HHHHHHHHHHHHHhhhhceecceeeee
Q 026454 159 GHHVATVILIVLSYIFRFARVGSVVLA 185 (238)
Q Consensus 159 ~HH~~Ti~Li~~SY~~n~~RvG~lVl~ 185 (238)
. .+.+++++.-+..++.|++++|+.
T Consensus 98 ~--a~~vl~v~y~~ls~wiRvttfvv~ 122 (518)
T PF11658_consen 98 G--AAFVLLVAYLFLSQWIRVTTFVVA 122 (518)
T ss_pred H--HHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5 345567777778899999888753
No 14
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.04 E-value=1.5e+02 Score=25.18 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026454 25 VLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (238)
Q Consensus 25 ~~~~~a~~~~i~R~~~~~~v~~pl~~~l 52 (238)
..+.-.+.+.++=.++.+++.+|+.+-+
T Consensus 50 ~~i~qlInFlIlv~lL~k~l~kPi~~~L 77 (205)
T PRK06231 50 VFIAHLIAFSILLLLGIFLFWKPTQRFL 77 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555677788889988875
Done!