Query 026454
Match_columns 238
No_of_seqs 134 out of 694
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkl_B SPAC19A8.12 protein, SP 23.7 86 0.0029 22.6 3.9 50 117-167 23-77 (95)
2 1b9u_A Protein (ATP synthase); 14.0 1.9E+02 0.0065 16.1 4.2 26 27-52 8-33 (34)
3 2kih_A Matrix protein 2; S31N, 10.9 2.4E+02 0.0081 17.0 2.9 28 187-226 3-30 (43)
4 2ljb_A M2 protein, BM2 protein 7.0 3.9E+02 0.013 15.4 2.6 29 187-227 3-31 (35)
5 1lql_A OSMC, osmotical inducib 7.0 4.3E+02 0.015 20.1 3.9 29 14-42 60-88 (166)
6 2kgl_A Mesoderm development ca 6.4 1.5E+02 0.0053 24.1 0.9 19 5-23 140-158 (195)
7 1s1g_A Potassium voltage-gated 5.7 1.9E+02 0.0064 21.5 1.0 16 169-184 63-78 (124)
8 2kjn_A LAH4; amphipathic pepti 5.0 3.7E+02 0.013 14.2 1.6 13 156-168 6-18 (26)
9 2nz0_B Potassium voltage-gated 4.9 2.2E+02 0.0074 21.6 0.9 16 169-184 85-100 (140)
10 1nn7_A Potassium channel KV4.2 4.8 2.2E+02 0.0075 20.3 0.8 14 170-183 51-64 (105)
No 1
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=23.71 E-value=86 Score=22.56 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=32.8
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHHHHHHH
Q 026454 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW-----ETRRADFGVSMGHHVATVIL 167 (238)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~af~l~~~~~l~f~-----e~rRkD~~~m~~HH~~Ti~L 167 (238)
=|....+...+.++.+|.|+|...=+. .-. .-.-|||.+++.+|+-.+--
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~-~~~np~Lp~~~lk~F~~~if~~cp~L~~ 77 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFI-RAQNDQLPSLGLRVFSAKLFAHCPLLWK 77 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTT-TTTCTTSCCCCHHHHHHHHHHHCTHHHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehcccc-cccCCCCCCCcHHHHHHHHHHhCHHHHh
Confidence 466677777899999999999653211 000 11235888999988765543
No 2
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.03 E-value=1.9e+02 Score=16.07 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026454 27 PLFALYFPSVRFFLEKFVFEKVAKRW 52 (238)
Q Consensus 27 ~~~a~~~~i~R~~~~~~v~~pl~~~l 52 (238)
+.-++.+.++=.++.+++.+|+.+-+
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777788999999988753
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=10.90 E-value=2.4e+02 Score=16.99 Aligned_cols=28 Identities=36% Similarity=0.575 Sum_probs=16.2
Q ss_pred cccchhHHHHHHHhhhhccchhhhHHHhHHHHHHHHHHHH
Q 026454 187 HDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLI 226 (238)
Q Consensus 187 HDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~ 226 (238)
.|.||++.-+|.+ .-++=.+.|+.-|++
T Consensus 3 ~dssdplv~aa~i------------iGIlHLiLwildRlf 30 (43)
T 2kih_A 3 NDSSDPLVVAANI------------IGILHLILWILDRLF 30 (43)
T ss_dssp ---CCHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 4777776654443 334456788888885
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=7.05 E-value=3.9e+02 Score=15.45 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=15.7
Q ss_pred cccchhHHHHHHHhhhhccchhhhHHHhHHHHHHHHHHHHH
Q 026454 187 HDASDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIY 227 (238)
Q Consensus 187 HDisDi~L~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~ 227 (238)
-|.||++.-.|. +.=++=.+.|+.-|++.
T Consensus 3 ~dSsDplviaA~------------IigiLHlilWildrLff 31 (35)
T 2ljb_A 3 NDSSDPLVVAAS------------IIGILHFIAWTIGHLNQ 31 (35)
T ss_dssp ---CCTHHHHHH------------HHHHHHHHHHHHHTHHH
T ss_pred CCCCCcHHHHHH------------HHHHHHHHHHHhhhhHh
Confidence 466777654443 33444567788888753
No 5
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=7.00 E-value=4.3e+02 Score=20.12 Aligned_cols=29 Identities=7% Similarity=-0.149 Sum_probs=24.6
Q ss_pred CCCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 14 QESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
+..-|+|.|++..-..+|....++.+.++
T Consensus 60 ~~~g~nP~ELllaalaaC~~~~~~~~a~~ 88 (166)
T 1lql_A 60 TAKGFGPLAALLSGLAACELATANLMAPA 88 (166)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999998887765
No 6
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=6.44 E-value=1.5e+02 Score=24.09 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.7
Q ss_pred cccccccCCCCCCCCcChh
Q 026454 5 ELVKSVNWEQESYPAYEDF 23 (238)
Q Consensus 5 ~~~~~~~~~~~~~p~~~Dl 23 (238)
|.+.+|+|++..|||..|=
T Consensus 140 ~e~~eVtiE~q~y~G~~~~ 158 (195)
T 2kgl_A 140 DRCAEVTLEGQMYPGKGGG 158 (195)
T ss_dssp SSEEEEECCSSSCCSSSSC
T ss_pred cceeEEEEcCEeccCCCCC
Confidence 5688999999999998753
No 7
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=5.71 E-value=1.9e+02 Score=21.47 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=11.5
Q ss_pred HHHhhhhceecceeee
Q 026454 169 VLSYIFRFARVGSVVL 184 (238)
Q Consensus 169 ~~SY~~n~~RvG~lVl 184 (238)
.|.+++||.|-|.+.+
T Consensus 63 ~F~~ILnflR~G~l~~ 78 (124)
T 1s1g_A 63 VFRCVLNFYRTGKLHY 78 (124)
T ss_dssp HHHHHHHHHHHSCBCC
T ss_pred HHHHHHHHHhcCCCCC
Confidence 3566788899997653
No 8
>2kjn_A LAH4; amphipathic peptide, de novo protein; NMR {Artificial gene} PDB: 2kjo_A
Probab=4.98 E-value=3.7e+02 Score=14.19 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 026454 156 VSMGHHVATVILI 168 (238)
Q Consensus 156 ~m~~HH~~Ti~Li 168 (238)
.+-+||++.+.|-
T Consensus 6 alalhhlahlalh 18 (26)
T 2kjn_A 6 ALALHHLAHLALH 18 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567888887764
No 9
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=4.92 E-value=2.2e+02 Score=21.64 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=11.6
Q ss_pred HHHhhhhceecceeee
Q 026454 169 VLSYIFRFARVGSVVL 184 (238)
Q Consensus 169 ~~SY~~n~~RvG~lVl 184 (238)
.|.+++||.|-|.+.+
T Consensus 85 ~F~~ILnflR~G~l~~ 100 (140)
T 2nz0_B 85 VFRCVLNFYRTGKLHY 100 (140)
T ss_dssp HHHHHHHHHHHSSBCC
T ss_pred HHHHHHHHHhcCCcCC
Confidence 3566789999997653
No 10
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=4.78 E-value=2.2e+02 Score=20.28 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=10.8
Q ss_pred HHhhhhceecceee
Q 026454 170 LSYIFRFARVGSVV 183 (238)
Q Consensus 170 ~SY~~n~~RvG~lV 183 (238)
|.+++||.|-|.+.
T Consensus 51 F~~ILnflR~g~l~ 64 (105)
T 1nn7_A 51 FRHILNFYRTGKLH 64 (105)
T ss_dssp HHHHHHHHHHSCBC
T ss_pred HHHHHHHHhcCCCC
Confidence 56678999999754
Done!