Query 026454
Match_columns 238
No_of_seqs 134 out of 694
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 13:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026454.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026454hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t3ta7 d.139.1.1 (A:817-1033) 10.9 44 0.0032 25.4 1.5 20 182-201 62-83 (217)
2 d1ml8a_ d.227.1.2 (A:) Hypothe 9.3 1.2E+02 0.0089 20.2 3.4 28 15-42 31-58 (134)
3 d2qklb1 a.242.1.1 (B:2-91) mRN 9.1 1.1E+02 0.0077 20.1 2.8 49 117-165 22-74 (90)
4 d1ukka_ d.227.1.1 (A:) Hypothe 8.3 1.3E+02 0.0093 20.4 3.2 28 15-42 40-67 (141)
5 d1n2fa_ d.227.1.1 (A:) Organic 6.9 1.6E+02 0.012 19.7 3.1 28 15-42 44-71 (142)
6 d1vlaa_ d.227.1.2 (A:) Hypothe 6.6 1.9E+02 0.014 19.4 3.4 28 15-42 39-66 (144)
7 d2pn2a1 d.227.1.1 (A:1-132) Un 6.3 2E+02 0.015 18.9 3.4 27 16-42 38-64 (132)
8 d1qwia_ d.227.1.1 (A:) Osmotic 5.9 2.3E+02 0.017 19.0 3.5 29 14-42 41-69 (142)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 5.8 1.6E+02 0.012 15.8 2.0 7 168-174 30-36 (37)
10 d1uspa_ d.227.1.1 (A:) Organic 5.7 2.6E+02 0.019 18.3 3.7 28 15-42 39-66 (137)
No 1
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]}
Probab=10.91 E-value=44 Score=25.38 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=14.1
Q ss_pred eeeeecccch--hHHHHHHHhh
Q 026454 182 VVLALHDASD--VFLEIGKMSK 201 (238)
Q Consensus 182 lVl~lHDisD--i~L~~aK~~~ 201 (238)
+|...||+|| ....++.|+-
T Consensus 62 lI~s~HDiSdGGL~~aL~EMaf 83 (217)
T d1t3ta7 62 KLLAWHDRSDGGLLVTLAEMAF 83 (217)
T ss_dssp CCSEEEECCTTHHHHHHHHHHH
T ss_pred cEEEEEecCCchHHHHHHHHhc
Confidence 5889999999 4455555543
No 2
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=9.34 E-value=1.2e+02 Score=20.23 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=23.8
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
...|+|.|++..-..+|..+.++.+.++
T Consensus 31 ~~gp~P~elllaal~~C~~~~~~~~a~~ 58 (134)
T d1ml8a_ 31 DKAPSPMEMVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999888887654
No 3
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=9.12 E-value=1.1e+02 Score=20.14 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=31.4
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHH----hhhhhhhhHHHHHHHHHH
Q 026454 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW----ETRRADFGVSMGHHVATV 165 (238)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~af~l~~~~~l~f~----e~rRkD~~~m~~HH~~Ti 165 (238)
=|......-.+.++.+|.|+|.+.=+.-... .-.-|||.+++.+|+-.+
T Consensus 22 ~P~eel~~~~rl~FqiE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~cp~L 74 (90)
T d2qklb1 22 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLL 74 (90)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHCHHH
Confidence 5666777778999999999997632210000 112357888888886443
No 4
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=8.32 E-value=1.3e+02 Score=20.37 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=23.6
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
..-|+|.|++..-+.+|....++.+.++
T Consensus 40 ~~gp~P~elllaala~C~~~~~~~~a~~ 67 (141)
T d1ukka_ 40 GEGTNPEELIAAAHAGCFSMALAASLER 67 (141)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998888887665
No 5
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=6.86 E-value=1.6e+02 Score=19.70 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=23.3
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
..-|+|.|++..-..+|....++.+.++
T Consensus 44 ~~g~~P~elllaalasC~~~t~~~~a~~ 71 (142)
T d1n2fa_ 44 GAATNPEQLFAAGYSACFIGAMKFVAGQ 71 (142)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999998888887654
No 6
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=6.64 E-value=1.9e+02 Score=19.35 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=23.1
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
..-|+|.|++..-+.+|....++.+..+
T Consensus 39 ~~g~~P~elllaala~C~~~~~~~~a~~ 66 (144)
T d1vlaa_ 39 DAAPRPLELVLTGLMGCTGMDVVSILRK 66 (144)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4569999999999999998888876543
No 7
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=6.33 E-value=2e+02 Score=18.86 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=22.9
Q ss_pred CCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 16 SYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 16 ~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
.-|+|.|++..-..+|....++.+.++
T Consensus 38 ~g~~P~eLllaala~C~~~~~~~~a~~ 64 (132)
T d2pn2a1 38 EAFSPTDLLATSLASCMLTIIGIKARD 64 (132)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998888876654
No 8
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=2.3e+02 Score=19.04 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 14 QESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
+..-|+|.|++..-..+|....+|.+.++
T Consensus 41 ~~~G~~P~elllaAlasC~~~~~~~~a~~ 69 (142)
T d1qwia_ 41 GEKGTNPEELIGAAHAACFSMALSLMLGE 69 (142)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999999999999999988765
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.84 E-value=1.6e+02 Score=15.79 Aligned_cols=7 Identities=43% Similarity=0.894 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 026454 168 IVLSYIF 174 (238)
Q Consensus 168 i~~SY~~ 174 (238)
+..||.+
T Consensus 30 LFssYfF 36 (37)
T d2axtl1 30 LFSSYFF 36 (37)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 3344443
No 10
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.67 E-value=2.6e+02 Score=18.26 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=23.1
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 026454 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (238)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~i~R~~~~~ 42 (238)
..-|+|.|++..-..+|....++.+.++
T Consensus 39 ~~g~~P~elllaAlasC~~~t~~~~a~~ 66 (137)
T d1uspa_ 39 GPGTNPEQLFAAGYAACFQGALGVVSRR 66 (137)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999998888876554
Done!