BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026455
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SY0|A Chain A, 1.15 A Crystal Structure Of T121v Mutant Of Nitrophorin 4
From Rhodnius Prolixus
pdb|1SY1|A Chain A, 1.0 A Crystal Structure Of T121v Mutant Of Nitrophorin 4
Complexed With Nitric Oxide
Length = 184
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|3FLL|A Chain A, Crystal Structure Of E55q Mutant Of Nitrophorin 4
Length = 184
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKQALYHYDPKTQDTF 68
>pdb|1SXU|A Chain A, 1.4 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Imidazole
pdb|1SXY|A Chain A, 1.07 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus
pdb|1SY3|A Chain A, 1.00 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 80 VSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
V++ +P+ +PKR A G SGK+ + KTQ TF
Sbjct: 25 VTDYLNLEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|1SXW|A Chain A, 1.05 A Crystal Structure Of D30a Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 80 VSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
V++ +P+ +PKR A G SGK+ + KTQ TF
Sbjct: 25 VTDYLALEPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|1NP4|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus
pdb|1EQD|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With Cn
pdb|1ERX|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With No
pdb|1D3S|A Chain A, 1.4 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixis At Ph5.6.
pdb|1D2U|A Chain A, 1.15 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus
pdb|1IKE|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus
Complexed With Histamine At 1.5 A Resolution
pdb|1IKJ|A Chain A, 1.27 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Imidazole
pdb|1KOI|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus
Complexed With Nitric Oxide At 1.08 A Resolution
pdb|1ML7|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With 4-
Iodopyrazole
pdb|1U0X|A Chain A, Crystal Structure Of Nitrophorin 4 Under Pressure Of Xenon
(200 Psi)
pdb|1X8N|A Chain A, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 7.4
pdb|1X8O|A Chain A, 1.01 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 5.6
pdb|1X8P|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Ammonia At Ph 7.4
pdb|1X8Q|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus In Complex With Water At Ph 5.6
pdb|1YWA|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With Co At Ph 5.6
pdb|1YWB|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With No At Ph 5.6
pdb|1YWC|A Chain A, Structure Of The Ferrous Co Complex Of Np4 From Rhodnius
Prolixus At Ph 7.0
pdb|1YWD|A Chain A, 1.08 A Structure Of Ferrous Np4 (Aquo Complex)
pdb|2AT5|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Nitric Oxide At Ph 5.6
pdb|2AT6|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Water At Ph 5.6
pdb|2AT8|X Chain X, 0.96 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Nitric Oxide At Ph
5.6
pdb|2OFM|X Chain X, 1.11 A Crystal Structure Of Apo Nitrophorin 4 From
Rhodnius Prolixus
pdb|3C77|X Chain X, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Ammonia At Ph 7.5
pdb|3C78|X Chain X, 0.98 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Ammonia At Ph 7.5
pdb|3MVF|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus
Complexed With Nitrite At Ph 7.4
Length = 184
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|2AT0|X Chain X, 1.00 A Crystal Structure Of L133v Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide At Ph
5.6
pdb|3C76|X Chain X, 1.07 A Crystal Structure Of L133v Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Ammonia At Ph 7.5
Length = 184
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|2AT3|X Chain X, 1.00 A Crystal Structure Of L123vL133V MUTANT OF
Nitrophorin 4 From Rhodnius Prolixus Complexed With
Imidazole At Ph 5.6
Length = 184
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|1SXX|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4 Complexed With Nitric Oxide
pdb|1SY2|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4
Length = 184
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|3TGA|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus At Ph 7.4
pdb|3TGB|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Imidazole At Ph 7.4
pdb|3TGC|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Nitrite At Ph 7.4
Length = 184
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
>pdb|1NP1|A Chain A, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Histamine
pdb|1NP1|B Chain B, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Histamine
pdb|2NP1|A Chain A, Crystal Structure Of Nitrophorin 1 From Rhodnius Prolixus
pdb|2NP1|B Chain B, Crystal Structure Of Nitrophorin 1 From Rhodnius Prolixus
pdb|3NP1|A Chain A, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Cyanide
pdb|3NP1|B Chain B, Crystal Structure Of The Complex Of Nitrophorin 1 From
Rhodnius Prolixus With Cyanide
pdb|4NP1|A Chain A, Nitrophorin 1 Complex With Nitric Oxide
pdb|4NP1|B Chain B, Nitrophorin 1 Complex With Nitric Oxide
Length = 184
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 87 DPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTF 123
+P+ +PKR A G SGK+ + KTQ TF
Sbjct: 32 EPDDVPKRYCAALAAGTASGKLKEALYHYDPKTQDTF 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,585,514
Number of Sequences: 62578
Number of extensions: 226959
Number of successful extensions: 465
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 12
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)