BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026455
         (238 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q12BR3|SYT_POLSJ Threonine--tRNA ligase OS=Polaromonas sp. (strain JS666 / ATCC
           BAA-500) GN=thrS PE=3 SV=1
          Length = 635

 Score = 32.7 bits (73), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 75  PETPTVSNVSGSDPETLPKRQRTAAVGGPNSGKITKRKARASKKTQTTFITADPANFRQM 134
           P+  TV+ V+ S    L K    AA+GG   GK+        K +  + ITA  A+  ++
Sbjct: 15  PQAVTVAEVAASIGAGLAK----AALGGKVDGKVVDTSYLIEKDSALSIITAKDADGLEL 70

Query: 135 VQQVT------GVR--FGSAQVAMAPVLK 155
           ++  T       V+  F  AQV + PV++
Sbjct: 71  IRHSTAHLLAYAVKELFSEAQVTIGPVIE 99


>sp|Q8INF0|GCY8E_DROME Soluble guanylate cyclase 88E OS=Drosophila melanogaster GN=Gyc88E
           PE=1 SV=3
          Length = 947

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 20/150 (13%)

Query: 31  DTETLTKALQKTFSNNNNNNNNSNDITYSVTETLACDFTPPFVAPETP---TVSNVSGSD 87
           DTE   + LQ + S+  NNNNN +   +S T        PP   P  P   T   ++  D
Sbjct: 780 DTEEFLEDLQISRSSLANNNNNQSPCGFSPTPPFRIGSAPPKPRPSNPDKFTPEELAAMD 839

Query: 88  ----PETLPKRQRTAAVGGPNSGKITKRKARASKK-TQTTFITADPANFRQMVQQVTGVR 142
               P T P R+  +     +S  + + KA   KK T +   + D      +   V  +R
Sbjct: 840 QLTPPSTAPARETASC----SSASLDRDKATKLKKITFSNSSSLDATTPTALAAVVCPMR 895

Query: 143 FGSAQVAMAPVL--------KPEPQRPGGR 164
             S  +A+APV+        K + QRPG +
Sbjct: 896 TKSPPMAVAPVMHMVQASTSKGDGQRPGSK 925


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.128    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,778,019
Number of Sequences: 539616
Number of extensions: 4144109
Number of successful extensions: 65209
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 45079
Number of HSP's gapped (non-prelim): 18061
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)