Query 026455
Match_columns 238
No_of_seqs 73 out of 75
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 13:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8b_A EIF-2-beta, probable tr 57.7 7.6 0.00026 26.8 2.8 23 24-46 17-39 (52)
2 1f15_A Coat protein; beta barr 43.0 5.1 0.00017 35.2 0.0 34 105-141 9-42 (218)
3 1bk9_A Phospholipase A2; hydro 18.2 51 0.0017 26.1 1.7 15 129-143 3-17 (124)
4 2ln3_A De novo designed protei 16.5 57 0.0019 24.5 1.5 16 23-38 39-54 (83)
5 4h0q_A Phospholipase A2, acid 15.9 62 0.0021 25.3 1.7 15 129-143 3-17 (121)
6 4hg9_A Basic phospholipase A2 15.7 63 0.0021 25.3 1.7 15 129-143 3-17 (122)
7 3u8i_A Phospholipase A2, membr 14.8 74 0.0025 24.9 1.9 16 128-143 2-17 (124)
8 1nee_A EIF-2-beta, probable tr 14.3 86 0.0029 25.2 2.2 24 24-47 50-73 (138)
9 2e9h_A EIF-5, eukaryotic trans 13.9 82 0.0028 26.0 2.0 24 24-47 49-72 (157)
10 1laj_A Capsid protein; anti-pa 11.6 49 0.0017 29.0 0.0 28 111-139 11-40 (217)
No 1
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=57.70 E-value=7.6 Score=26.80 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.8
Q ss_pred HHHHhhhcHHHHHHHHHhHhhcC
Q 026455 24 LSEAYARDTETLTKALQKTFSNN 46 (238)
Q Consensus 24 lseafarD~e~LtkALqkSlsn~ 46 (238)
+.++..||-+++.|+|.++|-..
T Consensus 17 Ia~~L~R~p~hv~ky~~~ELGt~ 39 (52)
T 1k8b_A 17 LAKAVNRDEEFFAKYLLKETGSA 39 (52)
T ss_dssp HHHHHHTCHHHHHHHHHHHHSSE
T ss_pred HHHHHCCCHHHHHHHHHHHhCCC
Confidence 88999999999999999999543
No 2
>1f15_A Coat protein; beta barrel, icosahedral virus; 3.20A {Cucumber mosaic virus} SCOP: b.121.4.5
Probab=42.99 E-value=5.1 Score=35.16 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=0.0
Q ss_pred CCCCccccccccCCCCceEeecCchHHHHHHHHHhcC
Q 026455 105 SGKITKRKARASKKTQTTFITADPANFRQMVQQVTGV 141 (238)
Q Consensus 105 ~~k~~kRR~RaSrR~ptT~i~ad~anFRaMVQq~TG~ 141 (238)
+++..+||+|..||. .-+--.+++|++-||+--.
T Consensus 9 gs~~~~RrpRRg~R~---~~~~a~ArLralt~Q~~Rl 42 (218)
T 1f15_A 9 AGRNRRRRPRRGSRS---APSSADANFRVLSQQLSRL 42 (218)
T ss_dssp -------------------------------------
T ss_pred CccccccCCcccccC---CCCccchhHHHHHHHHHHH
Confidence 345567888888882 2122334699999998643
No 3
>1bk9_A Phospholipase A2; hydrolase, platelet aggregation inhibitor, PBPB; HET: PBP; 2.00A {Gloydius halys} SCOP: a.133.1.2 PDB: 1psj_A 1ijl_A 1pp2_R
Probab=18.16 E-value=51 Score=26.07 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhcCCC
Q 026455 129 ANFRQMVQQVTGVRF 143 (238)
Q Consensus 129 anFRaMVQq~TG~p~ 143 (238)
-+|+.||+++||...
T Consensus 3 ~Qf~~MI~~~tg~~~ 17 (124)
T 1bk9_A 3 IQFETLIMKVAKKSG 17 (124)
T ss_dssp HHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHcCCCc
Confidence 479999999999764
No 4
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=16.54 E-value=57 Score=24.53 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=13.0
Q ss_pred HHHHHhhhcHHHHHHH
Q 026455 23 WLSEAYARDTETLTKA 38 (238)
Q Consensus 23 wlseafarD~e~LtkA 38 (238)
---|-|.||||.|+|-
T Consensus 39 keieeferdmedlakk 54 (83)
T 2ln3_A 39 KEIEEFERDMEDLAKK 54 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHh
Confidence 3457899999999985
No 5
>4h0q_A Phospholipase A2, acid 5; alpha-helix, glycerophospholipid, venom gland, hydrolase; 1.60A {Viridovipera stejnegeri} PDB: 1m8r_A 1m8s_A
Probab=15.91 E-value=62 Score=25.30 Aligned_cols=15 Identities=20% Similarity=0.343 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCC
Q 026455 129 ANFRQMVQQVTGVRF 143 (238)
Q Consensus 129 anFRaMVQq~TG~p~ 143 (238)
-+|..||+.+||...
T Consensus 3 ~qf~~MI~~~tg~~~ 17 (121)
T 4h0q_A 3 MQFELLIMKVAGRSG 17 (121)
T ss_dssp HHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhhCCCh
Confidence 479999999999875
No 6
>4hg9_A Basic phospholipase A2 B; alpha-helix, glycerophospholipid, venom gland, hydrolase; HET: CIT G3P; 1.60A {Gloydius halys} PDB: 1jia_A 1b4w_A 1c1j_A*
Probab=15.75 E-value=63 Score=25.30 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhcCCC
Q 026455 129 ANFRQMVQQVTGVRF 143 (238)
Q Consensus 129 anFRaMVQq~TG~p~ 143 (238)
-+|+.||+.+||...
T Consensus 3 ~qf~~MI~~~tg~~~ 17 (122)
T 4hg9_A 3 LQFRKMIKKMTGKEP 17 (122)
T ss_dssp HHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHcCCCc
Confidence 379999999999753
No 7
>3u8i_A Phospholipase A2, membrane associated; secreted phospholipase A2, hydrolase; HET: OLD; 1.10A {Homo sapiens} PDB: 3u8d_A* 1ayp_A 1db4_A* 1db5_A* 1dcy_A* 1j1a_A* 1bbc_A* 1kqu_A* 1pod_A 1poe_A* 3u8b_A 1kvo_A* 3u8h_A* 1n28_B 1n29_A
Probab=14.77 E-value=74 Score=24.92 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.3
Q ss_pred chHHHHHHHHHhcCCC
Q 026455 128 PANFRQMVQQVTGVRF 143 (238)
Q Consensus 128 ~anFRaMVQq~TG~p~ 143 (238)
--+|..||+.+||...
T Consensus 2 L~qf~~MI~~~tg~~~ 17 (124)
T 3u8i_A 2 LVNFHRMIKLTTGKEA 17 (124)
T ss_dssp HHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3589999999999753
No 8
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=14.34 E-value=86 Score=25.20 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.8
Q ss_pred HHHHhhhcHHHHHHHHHhHhhcCC
Q 026455 24 LSEAYARDTETLTKALQKTFSNNN 47 (238)
Q Consensus 24 lseafarD~e~LtkALqkSlsn~~ 47 (238)
|.++..||-++++|+|.++|-...
T Consensus 50 Ia~~L~R~p~hv~ky~~~ELGt~g 73 (138)
T 1nee_A 50 VADALNRDPQHLLKFLLRELGTAG 73 (138)
T ss_dssp HHHHHCSSHHHHHHHHHHHCCSCC
T ss_pred HHHHHCCCHHHHHHHHHHHhCCce
Confidence 899999999999999999997654
No 9
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.94 E-value=82 Score=26.02 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.8
Q ss_pred HHHHhhhcHHHHHHHHHhHhhcCC
Q 026455 24 LSEAYARDTETLTKALQKTFSNNN 47 (238)
Q Consensus 24 lseafarD~e~LtkALqkSlsn~~ 47 (238)
|.++..||-++|+|+|.++|-...
T Consensus 49 Iak~L~R~p~hv~ky~~~ELGt~g 72 (157)
T 2e9h_A 49 VAKALNRPPTYPTKYFGCELGAQT 72 (157)
T ss_dssp HHHHTTSCTHHHHHHHHHHHTCCE
T ss_pred HHHHHCCCHHHHHHHHHHHhCCce
Confidence 899999999999999999997644
No 10
>1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, icosahedral virus; 3.40A {Tomato aspermy virus} SCOP: b.121.4.5
Probab=11.63 E-value=49 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=0.0
Q ss_pred ccccccCCCCceEeecCchH--HHHHHHHHh
Q 026455 111 RKARASKKTQTTFITADPAN--FRQMVQQVT 139 (238)
Q Consensus 111 RR~RaSrR~ptT~i~ad~an--FRaMVQq~T 139 (238)
||+|..||. ..--.+|.-+ ||++-||+-
T Consensus 11 RrPRRG~R~-s~~~~~~A~~~~lraLtqQl~ 40 (217)
T 1laj_A 11 RRPRRGRRN-NNNNNSTARDKALLALTQQVN 40 (217)
T ss_dssp -------------------------------
T ss_pred CCCcCcccc-CcccccccchHHHHHHHHHHH
Confidence 677777775 2223445554 999999985
Done!