Query 026456
Match_columns 238
No_of_seqs 156 out of 635
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 14:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i11a_ a.21.1.1 (A:) Sox-5 {M 7.7 69 0.005 19.1 1.2 22 54-75 33-54 (70)
2 d2lefa_ a.21.1.1 (A:) Lymphoid 7.1 59 0.0043 20.3 0.6 23 54-76 33-55 (86)
3 d1ckta_ a.21.1.1 (A:) High mob 6.2 74 0.0054 18.8 0.7 22 54-75 34-55 (71)
4 d1hsma_ a.21.1.1 (A:) High mob 6.1 77 0.0056 19.2 0.8 23 54-76 33-55 (79)
5 d1td6a_ a.234.1.1 (A:) Hypothe 5.1 5.4E+02 0.039 19.4 5.4 47 18-69 59-106 (286)
6 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 4.9 94 0.0068 19.1 0.6 22 54-75 33-54 (80)
7 d1j46a_ a.21.1.1 (A:) SRY {Hum 4.6 1E+02 0.0075 19.0 0.6 22 54-75 35-56 (85)
8 d2vv5a3 f.34.1.1 (A:27-112) Me 3.6 4.5E+02 0.033 15.4 4.6 24 37-60 5-28 (86)
9 d1ug7a_ a.24.24.1 (A:) Domain 3.3 6.5E+02 0.047 16.6 4.6 43 6-48 34-80 (128)
10 d1jb0m_ f.23.19.1 (M:) Subunit 3.2 3.5E+02 0.026 13.4 2.7 26 195-220 3-28 (31)
No 1
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.74 E-value=69 Score=19.10 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=16.0
Q ss_pred HHhhhhhhhcCCCcchhcceee
Q 026456 54 ISTFYFKAYNGLTKIQRMEWNN 75 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~~ 75 (238)
+|+.+.+.|++|++.+|..|..
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~ 54 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYE 54 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 4555567899999988876644
No 2
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.11 E-value=59 Score=20.34 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=17.6
Q ss_pred HHhhhhhhhcCCCcchhcceeeh
Q 026456 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~~r 76 (238)
+|..+.+.|++|++++|..|...
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~~ 55 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 55566788999999988877653
No 3
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.18 E-value=74 Score=18.80 Aligned_cols=22 Identities=5% Similarity=0.179 Sum_probs=16.2
Q ss_pred HHhhhhhhhcCCCcchhcceee
Q 026456 54 ISTFYFKAYNGLTKIQRMEWNN 75 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~~ 75 (238)
+++.+.+.|++|++.+|-.|..
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~ 55 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4555667899999888877654
No 4
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=6.07 E-value=77 Score=19.21 Aligned_cols=23 Identities=4% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHhhhhhhhcCCCcchhcceeeh
Q 026456 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~~r 76 (238)
+++.+.+.|++|++.+|..|..+
T Consensus 33 i~k~~~~~W~~ls~~eK~~y~~~ 55 (79)
T d1hsma_ 33 VAKKLGEMWNNTAADDKQPYEKK 55 (79)
T ss_dssp HHHHHHHHHHTSCSTTTHHHHHH
T ss_pred HHHHHhhHHhcCCHHHHHHHHHH
Confidence 34445678999999888777543
No 5
>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=5.06 E-value=5.4e+02 Score=19.36 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=26.3
Q ss_pred HHHHhhhhccCCCcccHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhcCCCcch
Q 026456 18 AQVLVKNYIIADPFIPYTSILAGLLACKVVY-DLTQLISTFYFKAYNGLTKIQ 69 (238)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~i~~s~~~~~~i~-~ls~~ls~~~~k~y~~l~~~~ 69 (238)
++++.++ .++.|++|.+.+ | ++.-.+ .+++-++...+..|.+|++++
T Consensus 59 Al~~~~e-ELdspYlP~~li--s--~F~~a~~~~~~~l~e~~n~~lesL~~~e 106 (286)
T d1td6a_ 59 AQSRCEE-ELAAPYLPKPLV--S--FFQSLLQLVNHDLLEQQNAALASLPAAK 106 (286)
T ss_dssp HHHHHHH-HTTCTTSCHHHH--H--HHHHHHHHHHHHHHHHHCGGGGGCCHHH
T ss_pred HHHHHHH-HhcCCccchhHH--H--HHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4444444 688999998533 2 223333 355555555555666666544
No 6
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.94 E-value=94 Score=19.09 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=16.5
Q ss_pred HHhhhhhhhcCCCcchhcceee
Q 026456 54 ISTFYFKAYNGLTKIQRMEWNN 75 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~~ 75 (238)
+|+.+...|++|++++|-.|..
T Consensus 33 isk~~g~~W~~l~~eeK~~y~~ 54 (80)
T d1gt0d_ 33 ISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHHHHHH
Confidence 5556667899999988877654
No 7
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.57 E-value=1e+02 Score=18.99 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=16.5
Q ss_pred HHhhhhhhhcCCCcchhcceee
Q 026456 54 ISTFYFKAYNGLTKIQRMEWNN 75 (238)
Q Consensus 54 ls~~~~k~y~~l~~~~k~~w~~ 75 (238)
+|..+...|++|++++|..|..
T Consensus 35 isk~ig~~W~~L~~eeK~~y~~ 56 (85)
T d1j46a_ 35 ISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 4555667899999988877654
No 8
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.64 E-value=4.5e+02 Score=15.43 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 026456 37 ILAGLLACKVVYDLTQLISTFYFK 60 (238)
Q Consensus 37 i~~s~~~~~~i~~ls~~ls~~~~k 60 (238)
++.+++...+-+.+++++.+...|
T Consensus 5 il~~l~il~i~~~i~~~i~~~~~~ 28 (86)
T d2vv5a3 5 IVAALAIIIVGLIIARMISNAVNR 28 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544455566666555443
No 9
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.29 E-value=6.5e+02 Score=16.64 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=31.2
Q ss_pred hhHHHHhhcHHHHHHHhhhhccC---CCcc-cHHHHHHHHHHHHHHH
Q 026456 6 QTVTAIKSYQNQAQVLVKNYIIA---DPFI-PYTSILAGLLACKVVY 48 (238)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~i~~s~~~~~~i~ 48 (238)
|-|-|++-|+..+..+.+...-. +|+- ...-+++-++.|.=+-
T Consensus 34 QLVEA~dEYq~lar~L~k~~~~q~~~~~FtEdqKK~l~kIAtCLelR 80 (128)
T d1ug7a_ 34 QLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELR 80 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHHHHH
Confidence 56889999999999998887433 3333 3356788888887553
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.22 E-value=3.5e+02 Score=13.36 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhHH
Q 026456 195 MKRSTTYLVNGVIIFFAWLIARILLF 220 (238)
Q Consensus 195 ~~~s~~y~~n~~l~~~tFf~~Ri~~~ 220 (238)
..++..+...-++++-.+..+|+..-
T Consensus 3 lsdtqv~valvial~pg~lafrlate 28 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLSTE 28 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888887643
Done!