Your job contains 1 sequence.
>026458
MEAKPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK
YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEI
GSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLE
ELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026458
(238 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006271 - symbol:AT2G25355 species:3702 "Ara... 891 2.8e-89 1
TAIR|locus:504955555 - symbol:AT4G32175 "AT4G32175" speci... 887 7.5e-89 1
DICTYBASE|DDB_G0276783 - symbol:DDB_G0276783 "RRP40 famil... 457 2.8e-43 1
UNIPROTKB|E2RHV4 - symbol:EXOSC3 "Uncharacterized protein... 405 8.9e-38 1
RGD|1304739 - symbol:Exosc3 "exosome component 3" species... 405 8.9e-38 1
UNIPROTKB|F1NWK4 - symbol:EXOSC3 "Uncharacterized protein... 379 1.5e-37 2
FB|FBgn0260648 - symbol:Rrp40 species:7227 "Drosophila me... 401 2.4e-37 1
MGI|MGI:1913612 - symbol:Exosc3 "exosome component 3" spe... 399 3.9e-37 1
UNIPROTKB|Q3T0E1 - symbol:EXOSC3 "Exosome complex compone... 398 4.9e-37 1
UNIPROTKB|Q9NQT5 - symbol:EXOSC3 "Exosome complex compone... 390 3.5e-36 1
UNIPROTKB|F1ST67 - symbol:EXOSC3 "Uncharacterized protein... 389 4.4e-36 1
POMBASE|SPAC22A12.12c - symbol:SPAC22A12.12c "exosome sub... 386 9.2e-36 1
ZFIN|ZDB-GENE-050706-140 - symbol:exosc3 "exosome compone... 377 8.3e-35 1
WB|WBGene00010325 - symbol:exos-3 species:6239 "Caenorhab... 307 2.2e-27 1
SGD|S000005502 - symbol:RRP40 "Exosome non-catalytic core... 280 1.6e-24 1
CGD|CAL0004045 - symbol:orf19.3304 species:5476 "Candida ... 264 7.8e-23 1
UNIPROTKB|G5EH77 - symbol:MGCH7_ch7g600 "Exosome complex ... 185 1.8e-14 1
ASPGD|ASPL0000071151 - symbol:AN4617 species:162425 "Emer... 177 1.3e-13 1
UNIPROTKB|Q95Z14 - symbol:RRP40 "Rrp40p homologue" specie... 92 4.6e-07 2
>TAIR|locus:505006271 [details] [associations]
symbol:AT2G25355 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] InterPro:IPR026699 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0000178 EMBL:AC006300
EMBL:AC007070 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
HOGENOM:HOG000184644 KO:K03681 OMA:HKEPGSG ProtClustDB:CLSN2688410
EMBL:AY045654 EMBL:BT000534 IPI:IPI00547236 RefSeq:NP_565592.1
UniGene:At.13764 ProteinModelPortal:Q94AW9 SMR:Q94AW9 IntAct:Q94AW9
STRING:Q94AW9 PRIDE:Q94AW9 DNASU:817074 EnsemblPlants:AT2G25355.1
GeneID:817074 KEGG:ath:AT2G25355 TAIR:At2g25355 InParanoid:Q94AW9
PhylomeDB:Q94AW9 ArrayExpress:Q94AW9 Genevestigator:Q94AW9
Uniprot:Q94AW9
Length = 241
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 169/236 (71%), Positives = 200/236 (84%)
Query: 2 EAKPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKY 61
E S +L+D+ VVPGDVVLDLS+MTNQTIKLG GLRQ+ + +SV++AGKLR+SKPNKY
Sbjct: 4 EVSTSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKY 63
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIG 121
WVESS KRYVP ED VLGIVVDCK +N+++DI+GP +A LPVLAFEG RRN PKFE+
Sbjct: 64 WVESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVS 123
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
+LLY RVVK N GMNPELSC D SGKAA FG LKDG+MFETSTGLSRMLLSSPTCPVLE
Sbjct: 124 TLLYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEA 183
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
LGK+LSFE A GLNGR WV+A +P V++V+NA+MNSE+LS QQ+IMV+KLL++I
Sbjct: 184 LGKKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 239
>TAIR|locus:504955555 [details] [associations]
symbol:AT4G32175 "AT4G32175" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR026699 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 GO:GO:0000178
InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321 eggNOG:COG1097
HOGENOM:HOG000184644 KO:K03681 UniGene:At.28173 OMA:SYMAFPN
EMBL:BT022096 EMBL:BT026414 IPI:IPI00523442 RefSeq:NP_680755.2
UniGene:At.54574 UniGene:At.75510 ProteinModelPortal:Q500X1
IntAct:Q500X1 STRING:Q500X1 EnsemblPlants:AT4G32175.1 GeneID:829350
KEGG:ath:AT4G32175 TAIR:At4g32175 InParanoid:Q500X1
PhylomeDB:Q500X1 ProtClustDB:CLSN2688410 Genevestigator:Q500X1
Uniprot:Q500X1
Length = 241
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 173/236 (73%), Positives = 207/236 (87%)
Query: 1 MEAKPSTA--NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
M AK S + +L+++IVVPGDVVLDLS+M NQTIKLG GL Q+ D++S ++AGKL +SKP
Sbjct: 1 MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYW+ESS KRY+P +D VLGIVVD +ADNF+VDI+GP +A LPVLAFEGGTRRNIPKF
Sbjct: 61 NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
E+G+LLY+RVVK N GMNPELSCT+ASGKAA FG L+DG+MFETSTGLSRMLL+SPT PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
+E LGK+LSFEIAVGLNGRVWVNA +P V++V+NAIMNSESLS QQ+IMV+KLL
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLL 236
>DICTYBASE|DDB_G0276783 [details] [associations]
symbol:DDB_G0276783 "RRP40 family protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR026699 PROSITE:PS50126
dictyBase:DDB_G0276783 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0003723 GO:GO:0000178
EMBL:AAFI02000019 GO:GO:0006364 InterPro:IPR022967 SMART:SM00316
PANTHER:PTHR21321 eggNOG:COG1097 KO:K03681 OMA:HKEPGSG
RefSeq:XP_642864.1 ProteinModelPortal:Q7KWX9 STRING:Q7KWX9
EnsemblProtists:DDB0168296 GeneID:8620730 KEGG:ddi:DDB_G0276783
ProtClustDB:CLSZ2430854 Uniprot:Q7KWX9
Length = 237
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 100/226 (44%), Positives = 138/226 (61%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQK 68
L D+ VVPGDV+ + + +++G GL Q D+V KAG LR+SK ++ YW+E+ QK
Sbjct: 4 LKDQFVVPGDVIGKIGDLK---VRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQK 60
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP VED V+G +++ A++F VDI A L +FEG T+ N P +G+L+Y RV
Sbjct: 61 RYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCRV 120
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C KA FG L GYM S GLS LLS C +L+ LGK + +
Sbjct: 121 TVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSED-CFLLQILGKHIPY 179
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
EIAVG+NGRVW+N+ S ++VSN I NS+ + Q + + K L
Sbjct: 180 EIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQIEPFILKSL 225
>UNIPROTKB|E2RHV4 [details] [associations]
symbol:EXOSC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 GO:GO:0005730 GO:GO:0003723 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 CTD:51010
GeneTree:ENSGT00390000012042 KO:K03681 OMA:HKEPGSG GO:GO:0071034
GO:GO:0045006 EMBL:AAEX03007971 RefSeq:XP_538738.1
ProteinModelPortal:E2RHV4 Ensembl:ENSCAFT00000003746 GeneID:481616
KEGG:cfa:481616 NextBio:20856372 Uniprot:E2RHV4
Length = 275
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 91/228 (39%), Positives = 135/228 (59%)
Query: 17 PGDVVLDLSSMTNQT--IKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQK 68
PG+ L L++ T + G GLR+ D + V K G+LR +P YWV+S QK
Sbjct: 48 PGERPLRLNAGTRSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGGGSGGGVYWVDSQQK 107
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP D V+GIV D F VD+ G A L LAFEG T+RN P +IG L+Y +
Sbjct: 108 RYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQF 167
Query: 129 VKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V AN M PE+ C D+ G+A+ G++ +DG +F+ + GL R LL+ P C +L+E+GK
Sbjct: 168 VVANKDMEPEMVCIDSCGRASGMGVIGQDGLLFKVTLGLIRKLLA-PDCEILQEVGKLYP 226
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 227 LEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>RGD|1304739 [details] [associations]
symbol:Exosc3 "exosome component 3" species:10116 "Rattus
norvegicus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0035327 "transcriptionally
active chromatin" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045006 "DNA
deamination" evidence=ISO] [GO:0045190 "isotype switching"
evidence=ISO] [GO:0045830 "positive regulation of isotype
switching" evidence=ISO] [GO:0071034 "CUT catabolic process"
evidence=ISO] [GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR026699 GO:GO:0005730 GO:GO:0003723 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 GeneTree:ENSGT00390000012042
OrthoDB:EOG4BCDNP GO:GO:0071034 GO:GO:0045006 IPI:IPI00357897
Ensembl:ENSRNOT00000016582 Uniprot:D3ZT51
Length = 273
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 89/227 (39%), Positives = 136/227 (59%)
Query: 17 PGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-----YWVESSQKR 69
PG+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV+S QKR
Sbjct: 47 PGEQPLRLNAGARPRLRIVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKR 106
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIVV D F VD+ G A L LAFEG T+RN P ++G L+Y + V
Sbjct: 107 YVPVKGDHVIGIVVAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCV 166
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL+ P C +++ELGK
Sbjct: 167 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEIVQELGKLYPL 225
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 226 EIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAE 272
>UNIPROTKB|F1NWK4 [details] [associations]
symbol:EXOSC3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0071034 "CUT
catabolic process" evidence=IEA] InterPro:IPR026699 GO:GO:0005730
GO:GO:0003723 GO:GO:0035327 GO:GO:0006364 GO:GO:0000176
GO:GO:0000177 GO:GO:0043928 PANTHER:PTHR21321
GeneTree:ENSGT00390000012042 OMA:HKEPGSG GO:GO:0071034
GO:GO:0045006 EMBL:AADN02035315 IPI:IPI00595318
Ensembl:ENSGALT00000003816 Uniprot:F1NWK4
Length = 272
Score = 379 (138.5 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 84/222 (37%), Positives = 128/222 (57%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK---------YWVESSQKRYVP 72
L S+ + G GLR+ + V K G LR + YWV+S QKRYVP
Sbjct: 49 LGTSAAPRGRLLCGPGLRRCAGGLLVTKCGLLRHRRAGDGAAAAAGGAYWVDSQQKRYVP 108
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+GIV D F +D+ G A L LAFEG T+RN P ++G L+Y + + AN
Sbjct: 109 VKGDHVIGIVTGKVGDVFRLDVGGSEQASLSYLAFEGATKRNRPNVQVGDLIYGQFLVAN 168
Query: 133 PGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIA 191
M PE+ C D+SG+A+ G++ +DG++F+ S GL R LL+ P C +++EL + FE+
Sbjct: 169 KDMEPEMVCIDSSGRASGMGVIGQDGFLFKVSLGLIRKLLA-PKCEIIQELSQLYPFELV 227
Query: 192 VGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+G+NGR+WV A++ +++ N + E ++A Q+K + KL
Sbjct: 228 LGMNGRIWVKAKTVQQTLIIVNILEACEYMTAEQRKQALAKL 269
Score = 40 (19.1 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 11 VDKIVVPGDVVL 22
V ++V+PGDV+L
Sbjct: 24 VGQVVLPGDVLL 35
>FB|FBgn0260648 [details] [associations]
symbol:Rrp40 species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0000178 "exosome
(RNase complex)" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR026699 GO:GO:0005737
EMBL:AE014134 GO:GO:0003723 GO:GO:0016787 GO:GO:0010468
GO:GO:0000176 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
eggNOG:COG1097 GeneTree:ENSGT00390000012042 KO:K03681 OMA:HKEPGSG
EMBL:BT023807 RefSeq:NP_722725.1 UniGene:Dm.29211 SMR:Q8IPX7
IntAct:Q8IPX7 STRING:Q8IPX7 EnsemblMetazoa:FBtr0077883
GeneID:319033 KEGG:dme:Dmel_CG31938 UCSC:CG31938-RA CTD:319033
FlyBase:FBgn0260648 InParanoid:Q8IPX7 OrthoDB:EOG4WDBTR
GenomeRNAi:319033 NextBio:847046 Uniprot:Q8IPX7
Length = 232
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 86/221 (38%), Positives = 130/221 (58%)
Query: 14 IVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PG+ + + + ++ + LG GLR+ D+V KAG LR +P +WV++ Q+RY+P
Sbjct: 7 IVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D +LGIV D + VDI A + LAFE +++N P G L+Y RV+ A+
Sbjct: 67 ARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDLIYARVLNAS 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C ++ GK+ + G+L DG+ F+ S L RMLL CPVL L ++L +EIAV
Sbjct: 127 ADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRE-NCPVLAALTRELPYEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
G+NGR+W+ A S V ++NAI E + +DK+
Sbjct: 186 GVNGRIWLKAHSLKETVALANAISALEQSGCAE----IDKI 222
>MGI|MGI:1913612 [details] [associations]
symbol:Exosc3 "exosome component 3" species:10090 "Mus
musculus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] [GO:0071034 "CUT
catabolic process" evidence=ISO] InterPro:IPR026699 MGI:MGI:1913612
GO:GO:0005730 GO:GO:0003723 GO:GO:0004527 GO:GO:0090305
GO:GO:0000178 GO:GO:0045190 GO:GO:0035327 GO:GO:0006364
GO:GO:0000176 GO:GO:0000177 GO:GO:0043928 PANTHER:PTHR21321
eggNOG:COG1097 CTD:51010 GeneTree:ENSGT00390000012042
HOGENOM:HOG000184644 HOVERGEN:HBG051518 KO:K03681 OMA:HKEPGSG
OrthoDB:EOG4BCDNP GO:GO:0071034 GO:GO:0045006 ChiTaRS:EXOSC3
EMBL:BC023669 EMBL:BC054085 EMBL:AK006281 EMBL:AK009165
IPI:IPI00396812 RefSeq:NP_079789.1 UniGene:Mm.275788
UniGene:Mm.466922 ProteinModelPortal:Q7TQK4 SMR:Q7TQK4
IntAct:Q7TQK4 STRING:Q7TQK4 PhosphoSite:Q7TQK4 PaxDb:Q7TQK4
PRIDE:Q7TQK4 Ensembl:ENSMUST00000030003 GeneID:66362 KEGG:mmu:66362
InParanoid:Q7TQK4 NextBio:321447 Bgee:Q7TQK4 CleanEx:MM_EXOSC3
Genevestigator:Q7TQK4 GermOnline:ENSMUSG00000028322 Uniprot:Q7TQK4
Length = 274
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 89/233 (38%), Positives = 138/233 (59%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-----YWV 63
VD + G+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV
Sbjct: 42 VDGLGGAGEQPLRLNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWV 101
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+S QKRYVP D V+GIV+ D F VD+ G A L LAFEG T+RN P ++G L
Sbjct: 102 DSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 161
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL+ P C +++EL
Sbjct: 162 IYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEIVQEL 220
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
GK EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 221 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAE 273
>UNIPROTKB|Q3T0E1 [details] [associations]
symbol:EXOSC3 "Exosome complex component RRP40"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0000178 "exosome (RNase complex)" evidence=ISS] [GO:0071034
"CUT catabolic process" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045006 "DNA deamination"
evidence=IEA] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=IEA] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 eggNOG:COG1097 EMBL:BC102436
IPI:IPI00697728 RefSeq:NP_001030474.1 UniGene:Bt.48870
ProteinModelPortal:Q3T0E1 SMR:Q3T0E1 STRING:Q3T0E1
Ensembl:ENSBTAT00000025185 GeneID:533245 KEGG:bta:533245 CTD:51010
GeneTree:ENSGT00390000012042 HOGENOM:HOG000184644
HOVERGEN:HBG051518 InParanoid:Q3T0E1 KO:K03681 OMA:HKEPGSG
OrthoDB:EOG4BCDNP NextBio:20875973 GO:GO:0071034 GO:GO:0045006
Uniprot:Q3T0E1
Length = 275
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 86/221 (38%), Positives = 131/221 (59%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ ++ + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL+ P C +L+E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEILQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>UNIPROTKB|Q9NQT5 [details] [associations]
symbol:EXOSC3 "Exosome complex component RRP40"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IDA] [GO:0000178 "exosome
(RNase complex)" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0071034 "CUT catabolic process" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay"
evidence=IMP;TAS] [GO:0045190 "isotype switching" evidence=ISS]
[GO:0045006 "DNA deamination" evidence=IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR026699
GO:GO:0005829 GO:GO:0005730 GO:GO:0003723 EMBL:CH471071
GO:GO:0045190 GO:GO:0035327 GO:GO:0006364 GO:GO:0000176
GO:GO:0000175 GO:GO:0000177 EMBL:AL138752 GO:GO:0043928 PDB:2NN6
PDBsum:2NN6 PANTHER:PTHR21321 eggNOG:COG1097 CTD:51010
HOGENOM:HOG000184644 HOVERGEN:HBG051518 KO:K03681 OMA:HKEPGSG
GO:GO:0071034 GO:GO:0045006 EMBL:AF281132 EMBL:AK289571
EMBL:AK290864 EMBL:BC002437 EMBL:BC008880 EMBL:AF151860
IPI:IPI00015956 IPI:IPI00434985 RefSeq:NP_001002269.1
RefSeq:NP_057126.2 UniGene:Hs.602571 UniGene:Hs.713483
ProteinModelPortal:Q9NQT5 SMR:Q9NQT5 DIP:DIP-29847N IntAct:Q9NQT5
STRING:Q9NQT5 PhosphoSite:Q9NQT5 DMDM:14285758 PaxDb:Q9NQT5
PeptideAtlas:Q9NQT5 PRIDE:Q9NQT5 DNASU:51010
Ensembl:ENST00000327304 Ensembl:ENST00000396521
Ensembl:ENST00000465229 GeneID:51010 KEGG:hsa:51010 UCSC:uc004aal.2
GeneCards:GC09M037772 HGNC:HGNC:17944 HPA:HPA020485 MIM:606489
MIM:614678 neXtProt:NX_Q9NQT5 Orphanet:2254 PharmGKB:PA134926550
InParanoid:Q9NQT5 PhylomeDB:Q9NQT5 ChiTaRS:EXOSC3
EvolutionaryTrace:Q9NQT5 GenomeRNAi:51010 NextBio:53494
ArrayExpress:Q9NQT5 Bgee:Q9NQT5 CleanEx:HS_EXOSC3
Genevestigator:Q9NQT5 GermOnline:ENSG00000107371 Uniprot:Q9NQT5
Length = 275
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 87/231 (37%), Positives = 135/231 (58%)
Query: 17 PGDVV---LDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVES 65
PG V L L++ +++ G GLR+ D + V K G+LR +P YWV+S
Sbjct: 45 PGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDS 104
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
QKRYVP D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y
Sbjct: 105 QQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIY 164
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
+ V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL+ P C +++E+GK
Sbjct: 165 GQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEIIQEVGK 223
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 224 LYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>UNIPROTKB|F1ST67 [details] [associations]
symbol:EXOSC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 GO:GO:0005730 GO:GO:0003723 GO:GO:0045190
GO:GO:0035327 GO:GO:0006364 GO:GO:0000176 GO:GO:0000177
GO:GO:0043928 PANTHER:PTHR21321 CTD:51010
GeneTree:ENSGT00390000012042 KO:K03681 OMA:HKEPGSG GO:GO:0071034
GO:GO:0045006 EMBL:CU062410 RefSeq:XP_001929041.1 UniGene:Ssc.24317
Ensembl:ENSSSCT00000005895 GeneID:100152421 KEGG:ssc:100152421
Uniprot:F1ST67
Length = 275
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 88/227 (38%), Positives = 133/227 (58%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKR 69
G+ L L++ +++ G GLR+ D + V K G+LR + YWV+S QKR
Sbjct: 49 GERPLRLNAGARPRVRVVCGPGLRRCGDRLLVTKCGRLRHKEAGGGGGSGVYWVDSQQKR 108
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV D F VD+ G A L LAFEG T+RN P +IG L+Y + V
Sbjct: 109 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQFV 168
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL+ P C +L+E+GK
Sbjct: 169 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLVRKLLA-PNCEILQEVGKLYPL 227
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 228 EIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTADQRKQIFSRLAE 274
>POMBASE|SPAC22A12.12c [details] [associations]
symbol:SPAC22A12.12c "exosome subunit Rrp40
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000176
"nuclear exosome (RNase complex)" evidence=ISO] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR026699 PROSITE:PS50126 PomBase:SPAC22A12.12c
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000177
GO:GO:0000467 GO:GO:0070651 GO:GO:0071042 GO:GO:0070478
GO:GO:0070481 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
eggNOG:COG1097 HOGENOM:HOG000184644 KO:K03681 OMA:HKEPGSG
PIR:T38152 RefSeq:NP_593242.1 ProteinModelPortal:O13903
STRING:O13903 PRIDE:O13903 EnsemblFungi:SPAC22A12.12c.1
GeneID:2541837 KEGG:spo:SPAC22A12.12c OrthoDB:EOG45QMPG
NextBio:20802925 Uniprot:O13903
Length = 240
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 93/227 (40%), Positives = 132/227 (58%)
Query: 17 PGDVVLDLSSMTNQTIKLGGGL----RQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
PG+ + D + +I+LG GL + + + V KAG+L + N ++S KRY+P
Sbjct: 15 PGERIPDSIISQDGSIRLGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIP 74
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+G ++ A+ + VDI IA L LAFE TR++ P +GSL+Y RV A+
Sbjct: 75 ATNDQVIGQIISRFAEGYRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVSLAD 134
Query: 133 PGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRML-LSSPTCPVLEELGKQLSFEI 190
M PEL C DA+ GKAA +G LK+GYM T LS L P +L+ LG + FEI
Sbjct: 135 RDMEPELECFDATTGKAAGYGELKNGYMI-TGLSLSHCRKLILPKNTLLQTLGSYIPFEI 193
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
AVG+NGRVWVN+E+ ST VL+ AI N E +S +Q L++++
Sbjct: 194 AVGMNGRVWVNSENLSTTVLICTAIRNCEFMSDEEQIKYCKDLIKKL 240
>ZFIN|ZDB-GENE-050706-140 [details] [associations]
symbol:exosc3 "exosome component 3" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] InterPro:IPR026699 ZFIN:ZDB-GENE-050706-140
GO:GO:0007420 GO:GO:0003723 GO:GO:0009790 GO:GO:0000178
PANTHER:PTHR21321 eggNOG:COG1097 CTD:51010 HOGENOM:HOG000184644
HOVERGEN:HBG051518 KO:K03681 OrthoDB:EOG4BCDNP EMBL:BC098620
IPI:IPI00498722 RefSeq:NP_001025132.1 UniGene:Dr.150986
ProteinModelPortal:Q4KMD2 SMR:Q4KMD2 STRING:Q4KMD2 GeneID:565000
KEGG:dre:565000 InParanoid:Q4KMD2 NextBio:20885665 Uniprot:Q4KMD2
Length = 247
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 87/236 (36%), Positives = 132/236 (55%)
Query: 1 MEAKPSTANL--VDKIVVPGDVVLDLS-----SMTNQTIKL--GGGLRQECDSVSVIKAG 51
M++ T+ L + +V+PGD++ S + +L G GLR+ + V +AG
Sbjct: 1 MDSSVHTSLLERIGDVVLPGDLLFSFSPPEAGDANPKADRLICGPGLRRSGAEIRVCRAG 60
Query: 52 KLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT 111
L+ +PN YWV Q+RYVP ++V+GIV D F VD+ G A L LAFEG T
Sbjct: 61 VLKHKQPNMYWVNCQQRRYVPAKGESVIGIVTAKSGDVFKVDVGGSEQASLSYLAFEGAT 120
Query: 112 RRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLK-DGYMFETSTGLSRML 170
+RN P ++G L++ + AN M PEL C D+ G+A G+ DG +F+ S GL R L
Sbjct: 121 KRNRPNVQVGDLVFGQFTIANKDMEPELVCIDSCGRANGMGVFGGDGLLFKVSLGLVRRL 180
Query: 171 LSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQ 226
L+ P ++ +L K E+ VG+NGRVWV A + +++SN + E++S Q+
Sbjct: 181 LA-PQSDLVSDLEKMFPCEMVVGMNGRVWVKARTVQHTLILSNLLEACENMSTAQR 235
>WB|WBGene00010325 [details] [associations]
symbol:exos-3 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR026699 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
GO:GO:0003723 GO:GO:0000178 EMBL:Z79600 InterPro:IPR022967
SMART:SM00316 PANTHER:PTHR21321 eggNOG:COG1097
GeneTree:ENSGT00390000012042 HOGENOM:HOG000184644 KO:K03681
PIR:T22989 RefSeq:NP_492751.1 ProteinModelPortal:Q93830 SMR:Q93830
STRING:Q93830 PaxDb:Q93830 EnsemblMetazoa:F59C6.4.1
EnsemblMetazoa:F59C6.4.2 GeneID:186604 KEGG:cel:CELE_F59C6.4
UCSC:F59C6.4.1 CTD:186604 WormBase:F59C6.4 InParanoid:Q93830
OMA:EYAMINF NextBio:932398 Uniprot:Q93830
Length = 226
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 67/209 (32%), Positives = 107/209 (51%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+ +PGDV+ + SS + I G +R + + + G + K W+ KRY+P
Sbjct: 3 VYLPGDVINEPSSSDSSIIGYGISVRGQTRIAT--QPGAFH-NDDGKVWLNVHSKRYIPQ 59
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+ IV D F +DI A + FEG T+RN P + G ++Y V P
Sbjct: 60 EGDRVIAIVTSKTGDFFRLDIGTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFDTTP 119
Query: 134 GMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
EL+C D +A G L G+MF+ S R L++ P+C +L+ +GK FEI VG
Sbjct: 120 RTEAELTCVDDEKRARGMGQLNGGFMFKVSLNHCRRLIN-PSCKILQTVGKFFKFEITVG 178
Query: 194 LNGRVWVNAESPSTVVLVSNAIMNSESLS 222
+NGR+W++A + ++ + + I SE ++
Sbjct: 179 MNGRIWISASTSDDIIKIHDIINKSEFIT 207
>SGD|S000005502 [details] [associations]
symbol:RRP40 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0070481 "nuclear-transcribed mRNA catabolic process, non-stop
decay" evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent
rRNA catabolic process" evidence=IMP] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IC] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0043628 "ncRNA 3'-end processing" evidence=IC]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034427 "nuclear-transcribed mRNA catabolic
process, exonucleolytic, 3'-5'" evidence=IC] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IC] InterPro:IPR026699
PROSITE:PS50126 SGD:S000005502 GO:GO:0005730 EMBL:BK006948
GO:GO:0003723 GO:GO:0030145 GO:GO:0071035 GO:GO:0071038
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 PANTHER:PTHR21321 eggNOG:COG1097
GeneTree:ENSGT00390000012042 HOGENOM:HOG000184644 KO:K03681
OrthoDB:EOG45QMPG EMBL:Z74884 EMBL:AY692926 PIR:S61872
RefSeq:NP_014499.2 PDB:2JA9 PDBsum:2JA9 ProteinModelPortal:Q08285
SMR:Q08285 DIP:DIP-5330N IntAct:Q08285 MINT:MINT-530842
STRING:Q08285 PaxDb:Q08285 PeptideAtlas:Q08285 EnsemblFungi:YOL142W
GeneID:854023 KEGG:sce:YOL142W CYGD:YOL142w OMA:SYMAFPN
EvolutionaryTrace:Q08285 NextBio:975559 Genevestigator:Q08285
GermOnline:YOL142W Uniprot:Q08285
Length = 240
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 66/213 (30%), Positives = 111/213 (52%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECD----SVSVIKAGKLRFSKPNKYWVES----- 65
+ PGD + T +KLG G+ CD + + G L S K V++
Sbjct: 5 IFPGDS-FPVDPTT--PVKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDY 59
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
S KRY+P V D V+G+++ +D++ V ++ + L +AF +++N P ++G L+
Sbjct: 60 SSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLV 119
Query: 125 YVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y RV A + E+ C D++ G+ A FG+L+DG + + + +R LL + P+L+ L
Sbjct: 120 YARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLA 179
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
FE+A+GLNG++WV E S + IM
Sbjct: 180 AHTKFEVAIGLNGKIWVKCEELSNTLACYRTIM 212
>CGD|CAL0004045 [details] [associations]
symbol:orf19.3304 species:5476 "Candida albicans" [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] InterPro:IPR026699 CGD:CAL0004045
GO:GO:0003723 GO:GO:0000178 EMBL:AACQ01000045 EMBL:AACQ01000042
PANTHER:PTHR21321 eggNOG:COG1097 KO:K03681 RefSeq:XP_718127.1
RefSeq:XP_718396.1 ProteinModelPortal:Q5A930 STRING:Q5A930
GeneID:3639922 GeneID:3640204 KEGG:cal:CaO19.10814
KEGG:cal:CaO19.3304 Uniprot:Q5A930
Length = 270
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 64/200 (32%), Positives = 107/200 (53%)
Query: 12 DKIVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSVIK--AGKLRFSKPNK-----YWV 63
D I++PGD + +D T +T +G G+ ++ + +I AG L + + ++
Sbjct: 3 DTIILPGDKLPIDEDIFTVKTT-IGPGIYKKPKTQELIPSAAGILHYERAKSSSQQLIYI 61
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGS 122
ES+ KRY+P D V+GI+ +++ V ++ T L AF +++N P + G
Sbjct: 62 ESNSKRYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVLLSFWAFPNASKKNRPNLKNGQ 121
Query: 123 LLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLE 180
+Y RV + P + EL C D SGK FG+L + GY+F+ +R LL +P LE
Sbjct: 122 AVYARVSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKTIFLE 181
Query: 181 ELGKQLSFEIAVGLNGRVWV 200
L + FEIA+G+NG++W+
Sbjct: 182 TLATRCQFEIAIGINGKIWI 201
>UNIPROTKB|G5EH77 [details] [associations]
symbol:MGCH7_ch7g600 "Exosome complex exonuclease RRP40"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026699 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 EMBL:CM000230 EMBL:CM001237 PANTHER:PTHR21321
KO:K03681 RefSeq:XP_003720894.1 ProteinModelPortal:G5EH77
EnsemblFungi:MGG_02843T0 GeneID:2682396 KEGG:mgr:MGG_02843
Uniprot:G5EH77
Length = 264
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 62/177 (35%), Positives = 88/177 (49%)
Query: 15 VVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFS--KPNKYWVESSQKR 69
V+PG+ + + + + ++LG GLR D + AGKL + KP+ ++ + R
Sbjct: 10 VLPGEAIDPSLIPTHPKRPLRLGPGLRHIPPDEIVPTVAGKLVVNPAKPSLS-LDYNGGR 68
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
YVP D V+G V AD FV + T A LPVLAFEG TR+ P GSL+Y RV
Sbjct: 69 YVPEPNDLVIGQVHHSSADFHFVTLAPHTTNALLPVLAFEGATRKTRPVLPAGSLVYARV 128
Query: 129 VKANPGMNPELSC-TDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLE-ELG 183
A+ M+ EL C + +GKA G L + G + ++PT V LG
Sbjct: 129 ASASRHMDAELECFSQTTGKADGLGPLNPPAA--AAPGAGAVAAAAPTGTVFNVSLG 183
Score = 126 (49.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 135 MNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPT-----CPVLEELGKQ-LSF 188
+NP + +G A G +F S G++R LL VL+ L + L+F
Sbjct: 155 LNPPAAAAPGAGAVA--AAAPTGTVFNVSLGMARRLLMPQAERDAGLVVLDALAAEGLAF 212
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQRI 237
E AVG NG+VWV +ES T+VLV A+ ++ + L Q+ +V KL++ +
Sbjct: 213 ETAVGRNGKVWVASESVPTLVLVGRALAEVDEKGLDMDAQRRLVKKLVREM 263
>ASPGD|ASPL0000071151 [details] [associations]
symbol:AN4617 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR026699 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 EMBL:BN001303 EMBL:AACD01000079 PANTHER:PTHR21321
eggNOG:COG1097 HOGENOM:HOG000184644 KO:K03681 RefSeq:XP_662221.1
ProteinModelPortal:Q5B4B3 STRING:Q5B4B3
EnsemblFungi:CADANIAT00005818 GeneID:2872412 KEGG:ani:AN4617.2
OMA:CISEAQY OrthoDB:EOG4C2MKR Uniprot:Q5B4B3
Length = 273
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 68/203 (33%), Positives = 98/203 (48%)
Query: 14 IVVPGDVVLDLSSMTNQT-IKLGGGLR---------QECDSVSVIKAGKLRF-SKPNKYW 62
I++PGD V N ++LG GLR ++ +AG L +K N
Sbjct: 6 ILLPGDEVPSEYLPNNSAPLRLGQGLRLLSQPPGTTPSSHVLTATQAGVLSTDNKRNAVS 65
Query: 63 V-ESSQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFE 119
+ SS +RYVP D V+ V AD F I + P A L L+FEG T++ P +
Sbjct: 66 ILSSSNRRYVPTTNDLVIAQVHHSSADYFHCMITPQSPH-ALLGQLSFEGATKKTRPMLK 124
Query: 120 IGSLLYVRVVKAN--PGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGLSRMLLSSP 174
G L+Y RV+ PG EL+C + A+GKA GL L G +F+ STG++ L+ +
Sbjct: 125 GGDLVYARVLSTGLGPGAEVELTCVNPATGKAEPGGLGPLTGGMVFDISTGMAARLIKAS 184
Query: 175 TCP-----------VLEELGKQL 186
+ VL+ELGK+L
Sbjct: 185 SSSSDQQEGVAGLVVLDELGKKL 207
>UNIPROTKB|Q95Z14 [details] [associations]
symbol:RRP40 "Rrp40p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 PANTHER:PTHR21321
eggNOG:COG1097 EMBL:AJ308996 ProteinModelPortal:Q95Z14
IntAct:Q95Z14 STRING:Q95Z14 GenomeReviews:CM000207_GR
EuPathDB:TriTrypDB:Tb427tmp.160.5160 HOGENOM:HOG000255001
ProtClustDB:CLSZ2443530 Uniprot:Q95Z14
Length = 304
Score = 92 (37.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 139 LSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRV 198
L D + A FG L G + + +R L+ P +L LG ++ +++ VG+NG V
Sbjct: 197 LVARDWTSAEAVFGPLVGGTVVRVALPYARSLIDGPASRLLALLGDRVPYDVCVGVNGLV 256
Query: 199 WVNAESPS 206
WV PS
Sbjct: 257 WVRGH-PS 263
Score = 87 (35.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 53 LRFSKPNK---YWVES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE 108
LR + PN Y + + +RY+ D V+ IV+ A + ++A L L F+
Sbjct: 81 LRTAGPNHTQLYKLNGPAARRYMYAARDPVVAIVMKKNASYYSCYTGAASLAVLDALGFD 140
Query: 109 GGTRRNIPKFEIGSLLYVRVVKAN 132
G T+ N P+ + G ++Y VK N
Sbjct: 141 GATKTNKPRLQEGDVVYA-FVKGN 163
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 238 238 0.00091 113 3 11 22 0.43 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 598 (64 KB)
Total size of DFA: 164 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.02u 0.09s 19.11t Elapsed: 00:00:01
Total cpu time: 19.02u 0.09s 19.11t Elapsed: 00:00:01
Start: Fri May 10 14:33:31 2013 End: Fri May 10 14:33:32 2013