BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026458
(238 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225457023|ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis
vinifera]
gi|297733775|emb|CBI15022.3| unnamed protein product [Vitis vinifera]
Length = 237
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/231 (87%), Positives = 217/231 (93%)
Query: 8 ANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQ 67
A+ VD++VVPGDVVLDLS M NQTIKLGGGL Q+CD+++V KAG+LRFSKPNKYWVESSQ
Sbjct: 7 ASFVDQLVVPGDVVLDLSKMGNQTIKLGGGLHQDCDAITVTKAGRLRFSKPNKYWVESSQ 66
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
KRYVPCVEDTVLGIVVD KADNF VDI+GP +AFLPVLAFEGGTRRNIPKFE G+LLYVR
Sbjct: 67 KRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAGTLLYVR 126
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
VVKAN GMNPELSCTDASGKAAEFG LKDGYMFE+STGLSRMLLSSPTCPVLE LGK+LS
Sbjct: 127 VVKANTGMNPELSCTDASGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALGKKLS 186
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
FEIAVGLNGRVWVNA SPSTV+LV+NAIMNSESLS VQQKIMVDKLLQRI+
Sbjct: 187 FEIAVGLNGRVWVNASSPSTVILVANAIMNSESLSVVQQKIMVDKLLQRIQ 237
>gi|224119330|ref|XP_002318044.1| predicted protein [Populus trichocarpa]
gi|118482713|gb|ABK93275.1| unknown [Populus trichocarpa]
gi|222858717|gb|EEE96264.1| predicted protein [Populus trichocarpa]
Length = 242
Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/240 (82%), Positives = 220/240 (91%), Gaps = 2/240 (0%)
Query: 1 MEAKPS--TANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
ME+K S A +D +VVPGDVV+DLSSMTNQTIKLG GLRQ+CD++SV+KAGKLRFSKP
Sbjct: 1 MESKSSGSPATFIDNLVVPGDVVVDLSSMTNQTIKLGSGLRQDCDAISVMKAGKLRFSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYWVE+SQKRYVPC ED+VLGIVVD K+DNF +DI+GP +AFLPVLAFEGGTRRNIPKF
Sbjct: 61 NKYWVETSQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPALAFLPVLAFEGGTRRNIPKF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
E G+LLYVRVVKANPGMNPELSCTDASGKAAEFG LKDGYMFE STGLSRMLLSSPTCPV
Sbjct: 121 EAGTLLYVRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
LE LGK+LSFEIAVGLNGRVWVNA SPS V++V+NAIMNSE+LS VQQKIM +KLLQ+I+
Sbjct: 181 LEALGKKLSFEIAVGLNGRVWVNANSPSIVIIVANAIMNSETLSGVQQKIMAEKLLQKIQ 240
>gi|356499851|ref|XP_003518749.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
max]
Length = 240
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/240 (78%), Positives = 219/240 (91%), Gaps = 2/240 (0%)
Query: 1 MEAKPSTA--NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
ME K S++ NLVD+ V PGDV+LDLS+MTNQTIKLGGGLRQ+CD++SV+KAG+LRFSKP
Sbjct: 1 METKSSSSSTNLVDQSVCPGDVILDLSNMTNQTIKLGGGLRQDCDAISVMKAGRLRFSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYWVE+SQKRYVP ED+VLGIVVD ++DNF VDI+GP +AFLPVLAFEGGTRRNIP+F
Sbjct: 61 NKYWVENSQKRYVPHAEDSVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPRF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
EIG+L+Y RVVKANPGMNPEL+CTDASGKAAEFG LKDGYMFE +TGLSRMLLSSPTCPV
Sbjct: 121 EIGTLIYARVVKANPGMNPELACTDASGKAAEFGALKDGYMFECTTGLSRMLLSSPTCPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L+ LGK+LSFEIAVGLNGRVWV+A SP T ++V+NAIMNSE+LS QQ+IMV+KLL+RI
Sbjct: 181 LDALGKKLSFEIAVGLNGRVWVSAASPQTTIVVANAIMNSETLSGAQQRIMVEKLLERIH 240
>gi|449440676|ref|XP_004138110.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
sativus]
gi|449477413|ref|XP_004155016.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
sativus]
Length = 243
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/240 (80%), Positives = 219/240 (91%), Gaps = 2/240 (0%)
Query: 1 MEAKPSTAN--LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
M KPS+++ LVD+ VVPGDVVLDLS+M N+TIKLGGGLRQ+ D++SV K GKLRFSKP
Sbjct: 1 MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYWVESSQKRYVPC ED VLGIV+D +ADNF VDI+GP++AFLPVLAFEGGTRRNIPKF
Sbjct: 61 NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
E+G+LLYVRVVK NPGMNPEL+CTDASGKAA FGLLKDGYMFE STGLSRMLLSSP+CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
LE LGK+LSFE AVGLNGRVWVNA+SPST+++VSNAI+NSE+LS VQQ+IMVDKLL +K
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
>gi|357487343|ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
gi|217074508|gb|ACJ85614.1| unknown [Medicago truncatula]
gi|355515294|gb|AES96917.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
gi|388510130|gb|AFK43131.1| unknown [Medicago truncatula]
Length = 240
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/240 (78%), Positives = 218/240 (90%), Gaps = 2/240 (0%)
Query: 1 MEAKP--STANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
ME+K S+ N VD++V PGDVVLDLS+MTNQTIKLGGGLRQ+ D +SV+KAG+LRFSKP
Sbjct: 1 MESKSAGSSTNFVDQLVYPGDVVLDLSTMTNQTIKLGGGLRQDGDVISVMKAGRLRFSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYWVESSQKRYVP ED+VLGI+VD ++DNF VDI+GPT+AFLPVLAFEGGTRRNIPKF
Sbjct: 61 NKYWVESSQKRYVPHAEDSVLGIIVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPKF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
E+G+L+YVRVVKA PGMNPELSCTDASGKA EFG LK+GYMFE STGLSRMLLS+PTCPV
Sbjct: 121 EVGALIYVRVVKAIPGMNPELSCTDASGKAGEFGALKEGYMFECSTGLSRMLLSTPTCPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L+ LGK+LSFEIAVGLNGRVWVNA SPST ++V+NA++NSE LS VQQKIM +KLLQR++
Sbjct: 181 LDTLGKKLSFEIAVGLNGRVWVNASSPSTTIIVANALINSEVLSGVQQKIMAEKLLQRVQ 240
>gi|255540683|ref|XP_002511406.1| Exosome complex exonuclease RRP40, putative [Ricinus communis]
gi|223550521|gb|EEF52008.1| Exosome complex exonuclease RRP40, putative [Ricinus communis]
Length = 234
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/212 (84%), Positives = 200/212 (94%)
Query: 27 MTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCK 86
MTNQTIKLGGGLRQ+CD+V+VIKAGKLRFSKPNKYWVESS KRY+PC ED+VLGIVVD K
Sbjct: 1 MTNQTIKLGGGLRQDCDAVTVIKAGKLRFSKPNKYWVESSHKRYMPCAEDSVLGIVVDSK 60
Query: 87 ADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASG 146
A+NF VDI+GP +AFLPVLAFEGGTRRN+PKFE G+LLYVRVVKANPGMNPELSCTDASG
Sbjct: 61 AENFLVDIKGPAMAFLPVLAFEGGTRRNVPKFEAGTLLYVRVVKANPGMNPELSCTDASG 120
Query: 147 KAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPS 206
KA EFG+LKDGYMFE STGLSRMLLSSPTCPVLE LGK+LSFEIAVG+NGRVWVNA SPS
Sbjct: 121 KAVEFGVLKDGYMFECSTGLSRMLLSSPTCPVLEALGKKLSFEIAVGINGRVWVNATSPS 180
Query: 207 TVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
T+++V+NAIMNSE+LSAVQQKIMVD LL +I+
Sbjct: 181 TIIVVANAIMNSETLSAVQQKIMVDNLLDKIR 212
>gi|242053885|ref|XP_002456088.1| hypothetical protein SORBIDRAFT_03g030230 [Sorghum bicolor]
gi|241928063|gb|EES01208.1| hypothetical protein SORBIDRAFT_03g030230 [Sorghum bicolor]
Length = 239
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/234 (77%), Positives = 204/234 (87%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
KP+ + LVD VVPGDVVLDLS M NQTIKLG GLRQECD++ AGKLR KPNKYW+
Sbjct: 5 KPAPSPLVDNYVVPGDVVLDLSEMNNQTIKLGAGLRQECDTIQATSAGKLRLLKPNKYWI 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
E+SQKRY+P VEDTVLGIVVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFEIG+L
Sbjct: 65 ENSQKRYIPSVEDTVLGIVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFEIGTL 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+Y RVVKAN MNPELSC DASGKAAEFG LKDGYMF+TSTG+SRMLLSSPTCPVLE LG
Sbjct: 125 IYARVVKANSIMNPELSCMDASGKAAEFGQLKDGYMFDTSTGMSRMLLSSPTCPVLEALG 184
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
K+LSFEIAVGLNGRVWVNA + STV+LVSNAIM SESLS ++Q+ MV+ LL+R+
Sbjct: 185 KKLSFEIAVGLNGRVWVNAPAASTVILVSNAIMRSESLSGIKQRAMVENLLERL 238
>gi|125528678|gb|EAY76792.1| hypothetical protein OsI_04749 [Oryza sativa Indica Group]
Length = 239
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/238 (76%), Positives = 207/238 (86%), Gaps = 1/238 (0%)
Query: 1 MEA-KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPN 59
ME+ KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKPN
Sbjct: 1 MESRKPPPSALVDNHVVPGDVVLDLTEMTNQTIKLGAGLRQDCDTIQTTSAGRLRLSKPN 60
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWVESSQKRY+P VEDTVLG+VVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFE
Sbjct: 61 KYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE 120
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVL 179
IG+L+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTGLSRMLLSSPTCPVL
Sbjct: 121 IGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPVL 180
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
E LGK+LSFEIAVGLNGRVWVNA SPS V++VSNAI+ SESLS + Q+ MV+ LL+R+
Sbjct: 181 EALGKKLSFEIAVGLNGRVWVNAPSPSNVIVVSNAIIKSESLSGIGQRSMVESLLERL 238
>gi|57899790|dbj|BAD87535.1| ALM beta-like [Oryza sativa Japonica Group]
gi|125572934|gb|EAZ14449.1| hypothetical protein OsJ_04370 [Oryza sativa Japonica Group]
gi|215768884|dbj|BAH01113.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/234 (77%), Positives = 204/234 (87%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKPNKYWV
Sbjct: 5 KPPPSALVDNHVVPGDVVLDLTEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPNKYWV 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
ESSQKRY+P VEDTVLG+VVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFEIG+L
Sbjct: 65 ESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFEIGTL 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTGLSRMLLSSPTCPVLE LG
Sbjct: 125 IYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPVLEALG 184
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
K+LSFEIAVGLNGRVWVNA SPS V++VSNAI+ SESLS + Q+ MV+ LL+R+
Sbjct: 185 KKLSFEIAVGLNGRVWVNAPSPSNVIVVSNAIIKSESLSGIGQRSMVESLLERL 238
>gi|115438997|ref|NP_001043778.1| Os01g0661400 [Oryza sativa Japonica Group]
gi|113533309|dbj|BAF05692.1| Os01g0661400 [Oryza sativa Japonica Group]
gi|215706438|dbj|BAG93294.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/234 (76%), Positives = 204/234 (87%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKP+KYWV
Sbjct: 5 KPPPSALVDNHVVPGDVVLDLAEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPSKYWV 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
ESSQKRY+P VEDTVLG+VVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFEIG+L
Sbjct: 65 ESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFEIGTL 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTGLSRMLLSSPTCP+LE LG
Sbjct: 125 IYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPILEALG 184
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
K+LSFEIAVGLNGRVWVNA SPS V++VSNAI+ SESLS + Q+ MV+ LL+R+
Sbjct: 185 KKLSFEIAVGLNGRVWVNAPSPSNVIVVSNAIIKSESLSGIGQRSMVESLLERL 238
>gi|414881126|tpg|DAA58257.1| TPA: exosome complex exonuclease RRP40 [Zea mays]
Length = 239
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/234 (76%), Positives = 205/234 (87%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
+P+++ LVD VVPGDVVLDLS M NQTIKLG GLRQECD++ AGKLR KPNKYW+
Sbjct: 5 RPASSPLVDNYVVPGDVVLDLSEMNNQTIKLGAGLRQECDTIQATSAGKLRQLKPNKYWI 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
E+SQKRY+P VEDTVLGIVVD K DNF VDI+GP +AFLPVL+FEGGTRRNIPKFEIG+L
Sbjct: 65 ENSQKRYIPSVEDTVLGIVVDTKPDNFLVDIKGPNLAFLPVLSFEGGTRRNIPKFEIGTL 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTG+SRMLLSSPTCPVLE LG
Sbjct: 125 IYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGMSRMLLSSPTCPVLEVLG 184
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
K+LSFEIAVGLNGRVWVNA + STV+LVSNAIM SESLS ++Q+ MV+ LL+R+
Sbjct: 185 KKLSFEIAVGLNGRVWVNAPAASTVILVSNAIMRSESLSGIKQRAMVENLLERL 238
>gi|195626980|gb|ACG35320.1| exosome complex exonuclease RRP40 [Zea mays]
Length = 239
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/234 (76%), Positives = 203/234 (86%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
+P+++ LVD VVPGDVVLDLS M NQTIKLG GLRQECD++ AGKLR KPNKYW+
Sbjct: 5 RPASSPLVDNYVVPGDVVLDLSEMNNQTIKLGAGLRQECDTIQATSAGKLRQLKPNKYWI 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
E+SQKRY+P VEDTVLGIVV K DNF VDI+GP +AFLPVL+FEGGTRRNIPKFEIG+L
Sbjct: 65 ENSQKRYIPSVEDTVLGIVVYTKPDNFLVDIKGPNLAFLPVLSFEGGTRRNIPKFEIGTL 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTG+SRMLLSSPTCPVLE LG
Sbjct: 125 IYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGMSRMLLSSPTCPVLEVLG 184
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
K LSFEIAVGLNGRVWVNA + STV+LVSNAIM SESLS ++Q+ MV+ LL+R+
Sbjct: 185 KXLSFEIAVGLNGRVWVNAPAASTVILVSNAIMRSESLSGIKQRAMVENLLERL 238
>gi|297802814|ref|XP_002869291.1| hypothetical protein ARALYDRAFT_491516 [Arabidopsis lyrata subsp.
lyrata]
gi|297315127|gb|EFH45550.1| hypothetical protein ARALYDRAFT_491516 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/239 (74%), Positives = 208/239 (87%), Gaps = 2/239 (0%)
Query: 1 MEAKPSTA--NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
M AK S + +L+D+IVVPGDVVLDLS+MTNQTIKLG GL Q+ D +S ++AGKL F KP
Sbjct: 1 MAAKVSVSPTSLIDQIVVPGDVVLDLSNMTNQTIKLGSGLHQDNDVISAMRAGKLSFCKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYWVESS KRY+P ED VLGIVVD K DNF+VDI+GP +A LPVLAFEGGT+RNIPKF
Sbjct: 61 NKYWVESSHKRYIPRPEDHVLGIVVDSKTDNFWVDIKGPQLALLPVLAFEGGTQRNIPKF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
E+G+LLY+RVVK N GMNPELSCTDASGKAA FG L+DG+M ETSTGLSRMLLSSPTCPV
Sbjct: 121 EVGTLLYLRVVKTNTGMNPELSCTDASGKAALFGPLRDGFMLETSTGLSRMLLSSPTCPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+E LGK+LSFEIAVGLNGRVWVN+ +P TV++V+NA+MNSESLS QQ+IMV+KLL +I
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNSAAPRTVIIVANAMMNSESLSVTQQRIMVEKLLAKI 239
>gi|357135800|ref|XP_003569496.1| PREDICTED: putative exosome complex component rrp40-like
[Brachypodium distachyon]
Length = 239
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/238 (74%), Positives = 203/238 (85%), Gaps = 1/238 (0%)
Query: 1 MEAK-PSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPN 59
ME+K P + LVD VVPGDV+LDL+ MTNQTIKLG GLRQ+ D++ AG+LR SKPN
Sbjct: 1 MESKKPPPSALVDNHVVPGDVILDLADMTNQTIKLGAGLRQDYDTIQATSAGRLRLSKPN 60
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWVESSQKRY+P VEDTVLGIVVD K DNF VDI+GP AFLPVL+FEGGTRRNIPKFE
Sbjct: 61 KYWVESSQKRYIPSVEDTVLGIVVDTKPDNFLVDIKGPNFAFLPVLSFEGGTRRNIPKFE 120
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVL 179
IG+L+Y RVVKAN MNPELSC DASGKAAEFG LK+GYMF+TSTGLSRMLLSSPTCP+L
Sbjct: 121 IGTLIYARVVKANSIMNPELSCMDASGKAAEFGQLKNGYMFDTSTGLSRMLLSSPTCPLL 180
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
E LGK+LSFEIAVGLNGRVWVNA SPS V++VS AI+ SES + +QQK MV+ LL ++
Sbjct: 181 EALGKKLSFEIAVGLNGRVWVNAPSPSNVIVVSTAIIRSESYTQIQQKSMVENLLVKL 238
>gi|226491296|ref|NP_001148820.1| exosome complex exonuclease RRP40 [Zea mays]
gi|195622378|gb|ACG33019.1| exosome complex exonuclease RRP40 [Zea mays]
gi|238006308|gb|ACR34189.1| unknown [Zea mays]
gi|414881121|tpg|DAA58252.1| TPA: exosome complex exonuclease RRP40 [Zea mays]
Length = 239
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/234 (75%), Positives = 202/234 (86%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
+P+ + LVD VVPGDVVLDLS M NQTIKLG GLRQECD++ AGKLR KPNKY +
Sbjct: 5 RPAPSPLVDNYVVPGDVVLDLSEMNNQTIKLGAGLRQECDTIEATSAGKLRQLKPNKYCI 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
E+SQKRY P VEDTVLGIVVD K DNF VDI+GP +AFLPVL+FEGGTRRNIPKF+IG+L
Sbjct: 65 ENSQKRYKPSVEDTVLGIVVDTKPDNFLVDIKGPNLAFLPVLSFEGGTRRNIPKFKIGTL 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+Y RVVKAN MNPELSC DA+GKAA+FG LKDGYMF+TSTG+SRMLLSSPTCPVLE LG
Sbjct: 125 IYARVVKANSIMNPELSCMDATGKAAKFGQLKDGYMFDTSTGMSRMLLSSPTCPVLEVLG 184
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
K+LSFEIAVGLNGRVWVNA + STV+LVSNAIM SESLS ++Q+ MV+ LL+R+
Sbjct: 185 KKLSFEIAVGLNGRVWVNAPAASTVILVSNAIMRSESLSGIKQRAMVENLLERL 238
>gi|18400806|ref|NP_565592.1| exosome complex component RRP40 [Arabidopsis thaliana]
gi|15010706|gb|AAK74012.1| At2g25350/F13B15.1 [Arabidopsis thaliana]
gi|20197753|gb|AAM15233.1| Expressed protein [Arabidopsis thaliana]
gi|20198061|gb|AAM15377.1| Expressed protein [Arabidopsis thaliana]
gi|23308267|gb|AAN18103.1| At2g25350/F13B15.1 [Arabidopsis thaliana]
gi|330252599|gb|AEC07693.1| exosome complex component RRP40 [Arabidopsis thaliana]
Length = 241
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/236 (71%), Positives = 200/236 (84%)
Query: 2 EAKPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKY 61
E S +L+D+ VVPGDVVLDLS+MTNQTIKLG GLRQ+ + +SV++AGKLR+SKPNKY
Sbjct: 4 EVSTSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKY 63
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIG 121
WVESS KRYVP ED VLGIVVDCK +N+++DI+GP +A LPVLAFEG RRN PKFE+
Sbjct: 64 WVESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVS 123
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
+LLY RVVK N GMNPELSC D SGKAA FG LKDG+MFETSTGLSRMLLSSPTCPVLE
Sbjct: 124 TLLYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEA 183
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
LGK+LSFE A GLNGR WV+A +P V++V+NA+MNSE+LS QQ+IMV+KLL++I
Sbjct: 184 LGKKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 239
>gi|145361214|ref|NP_680755.2| PNAS-3 related protein [Arabidopsis thaliana]
gi|63147368|gb|AAY34157.1| At4g32175 [Arabidopsis thaliana]
gi|111074296|gb|ABH04521.1| At4g32175 [Arabidopsis thaliana]
gi|332660614|gb|AEE86014.1| PNAS-3 related protein [Arabidopsis thaliana]
Length = 241
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/239 (72%), Positives = 208/239 (87%), Gaps = 2/239 (0%)
Query: 1 MEAKPSTA--NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
M AK S + +L+++IVVPGDVVLDLS+M NQTIKLG GL Q+ D++S ++AGKL +SKP
Sbjct: 1 MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYW+ESS KRY+P +D VLGIVVD +ADNF+VDI+GP +A LPVLAFEGGTRRNIPKF
Sbjct: 61 NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
E+G+LLY+RVVK N GMNPELSCT+ASGKAA FG L+DG+MFETSTGLSRMLL+SPT PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+E LGK+LSFEIAVGLNGRVWVNA +P V++V+NAIMNSESLS QQ+IMV+KLL I
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLLAII 239
>gi|62320889|dbj|BAD93872.1| hypothetical protein [Arabidopsis thaliana]
Length = 241
Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 174/239 (72%), Positives = 207/239 (86%), Gaps = 2/239 (0%)
Query: 1 MEAKPSTA--NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
M AK S + +L+++IVVPGDVVLDLS+M NQTIKLG GL Q+ D++S + AGKL +SKP
Sbjct: 1 MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMGAGKLSYSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
NKYW+ESS KRY+P +D VLGIVVD +ADNF+VDI+GP +A LPVLAFEGGTRRNIPKF
Sbjct: 61 NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
E+G+LLY+RVVK N GMNPELSCT+ASGKAA FG L+DG+MFETSTGLSRMLL+SPT PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+E LGK+LSFEIAVGLNGRVWVNA +P V++V+NAIMNSESLS QQ+IMV+KLL I
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLLAII 239
>gi|222618991|gb|EEE55123.1| hypothetical protein OsJ_02901 [Oryza sativa Japonica Group]
Length = 491
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 159/201 (79%), Positives = 177/201 (88%), Gaps = 1/201 (0%)
Query: 1 MEA-KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPN 59
ME+ KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKP+
Sbjct: 1 MESRKPPPSALVDNHVVPGDVVLDLAEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPS 60
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWVESSQKRY+P VEDTVLG+VVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFE
Sbjct: 61 KYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE 120
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVL 179
IG+L+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTGLSRMLLSSPTCP+L
Sbjct: 121 IGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPIL 180
Query: 180 EELGKQLSFEIAVGLNGRVWV 200
E LGK+LSFEIAVGLNGRVWV
Sbjct: 181 EALGKKLSFEIAVGLNGRVWV 201
>gi|145329617|ref|NP_001077958.1| exosome complex component RRP40 [Arabidopsis thaliana]
gi|330252600|gb|AEC07694.1| exosome complex component RRP40 [Arabidopsis thaliana]
Length = 213
Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 154/211 (72%), Positives = 181/211 (85%)
Query: 27 MTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCK 86
MTNQTIKLG GLRQ+ + +SV++AGKLR+SKPNKYWVESS KRYVP ED VLGIVVDCK
Sbjct: 1 MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60
Query: 87 ADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASG 146
+N+++DI+GP +A LPVLAFEG RRN PKFE+ +LLY RVVK N GMNPELSC D SG
Sbjct: 61 GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG 120
Query: 147 KAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPS 206
KAA FG LKDG+MFETSTGLSRMLLSSPTCPVLE LGK+LSFE A GLNGR WV+A +P
Sbjct: 121 KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR 180
Query: 207 TVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
V++V+NA+MNSE+LS QQ+IMV+KLL++I
Sbjct: 181 IVIIVANALMNSETLSGTQQRIMVEKLLEKI 211
>gi|218188791|gb|EEC71218.1| hypothetical protein OsI_03146 [Oryza sativa Indica Group]
Length = 550
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/202 (78%), Positives = 174/202 (86%), Gaps = 3/202 (1%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKP+KYWV
Sbjct: 5 KPPPSALVDNHVVPGDVVLDLAEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPSKYWV 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
ESSQKRY+P VEDTVLG+VVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFEIG+L
Sbjct: 65 ESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFEIGTL 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTGLSRMLLSSPTCPVLE LG
Sbjct: 125 IYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPVLEALG 184
Query: 184 KQLSFEIAVGLNGRV---WVNA 202
K+LSFEIAVGLNGRV W A
Sbjct: 185 KKLSFEIAVGLNGRVIFEWHRA 206
>gi|359807517|ref|NP_001241402.1| uncharacterized protein LOC100809941 [Glycine max]
gi|255636017|gb|ACU18353.1| unknown [Glycine max]
Length = 179
Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 154/169 (91%), Gaps = 2/169 (1%)
Query: 1 MEAKPSTA--NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP 58
ME K +++ NLVD+ V PGDVVLDLS M NQTIKLGGGLRQ+CD++SV+KAG+LRFSKP
Sbjct: 1 METKSTSSFTNLVDQSVCPGDVVLDLSKMINQTIKLGGGLRQDCDAISVMKAGRLRFSKP 60
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
+KYWVE+SQKRYVP ED+VLGIVVD ++DNF VDI+GPT+AFLPVLAFEGGTRRNIP+F
Sbjct: 61 HKYWVENSQKRYVPYAEDSVLGIVVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPRF 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLS 167
EIG+L+YVRV+KANPGMNPELSCTDASGKAAEFG LKDGYMFE +TG S
Sbjct: 121 EIGTLIYVRVIKANPGMNPELSCTDASGKAAEFGALKDGYMFECTTGFS 169
>gi|168047049|ref|XP_001775984.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672642|gb|EDQ59176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 139/220 (63%), Positives = 171/220 (77%), Gaps = 2/220 (0%)
Query: 17 PGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSK-PNKYWVESSQKRYVPCVE 75
PGD+VLDL+S TN+ +++G GLRQ+ DS+ KAGKLRF K NKYWVE SQKRY+P VE
Sbjct: 16 PGDIVLDLNS-TNKVLRVGSGLRQDGDSILATKAGKLRFQKQSNKYWVEGSQKRYIPNVE 74
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
DTV+GI+VD +++ F +DI GP LP+LAFEG TRRNIP + G+ +Y RVV A+
Sbjct: 75 DTVVGIMVDRRSEMFILDIGGPAFGSLPILAFEGATRRNIPNLQAGAAVYARVVNAHRDS 134
Query: 136 NPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN 195
+PELSCTDA+GK+A FG LK G++F+ STGL+R LLS PT PVLE LGK LSFEIAVGLN
Sbjct: 135 DPELSCTDAAGKSAGFGPLKGGFIFDCSTGLARGLLSKPTPPVLEVLGKSLSFEIAVGLN 194
Query: 196 GRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
GRVWVNA +T++ VSNAI N+E LS QQ IMV KLL+
Sbjct: 195 GRVWVNAPKVATIITVSNAIQNAEFLSPTQQHIMVKKLLE 234
>gi|125528666|gb|EAY76780.1| hypothetical protein OsI_04736 [Oryza sativa Indica Group]
Length = 197
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/172 (76%), Positives = 148/172 (86%), Gaps = 1/172 (0%)
Query: 1 MEA-KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPN 59
ME+ KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKPN
Sbjct: 1 MESRKPPPSALVDNHVVPGDVVLDLTEMTNQTIKLGAGLRQDCDTIQTTSAGRLRLSKPN 60
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWVESSQKRY+P VEDTVLG+VVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFE
Sbjct: 61 KYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE 120
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLL 171
IG+L+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTGLSR++
Sbjct: 121 IGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRIIF 172
>gi|55773826|dbj|BAD72364.1| ALM beta-like [Oryza sativa Japonica Group]
gi|55773965|dbj|BAD72492.1| ALM beta-like [Oryza sativa Japonica Group]
Length = 537
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/172 (75%), Positives = 148/172 (86%), Gaps = 1/172 (0%)
Query: 1 MEA-KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPN 59
ME+ KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKP+
Sbjct: 1 MESRKPPPSALVDNHVVPGDVVLDLAEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPS 60
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWVESSQKRY+P VEDTVLG+VVD K DNF VDI+GP +AFLPVLAFEGGTRRNIPKFE
Sbjct: 61 KYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE 120
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLL 171
IG+L+Y RVVKAN MNPELSC DA+GKAAEFG LKDGYMF+TSTGLSR++
Sbjct: 121 IGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRIIF 172
>gi|302760611|ref|XP_002963728.1| hypothetical protein SELMODRAFT_141745 [Selaginella moellendorffii]
gi|300168996|gb|EFJ35599.1| hypothetical protein SELMODRAFT_141745 [Selaginella moellendorffii]
Length = 231
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/227 (57%), Positives = 174/227 (76%), Gaps = 2/227 (0%)
Query: 13 KIVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYV 71
+IV+PGDVV L++ N+ ++LG GL Q+ D V IKAG+L +K +K WVE SQKRY+
Sbjct: 6 RIVLPGDVVFGLAAQAQNKVLRLGSGLSQDADRVVAIKAGRLNHAK-SKLWVEGSQKRYI 64
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
P ED+V+GIV+D +A+ F VD+ P + LP+L+FEG TR+NIP + G+++Y RVVKA
Sbjct: 65 PSAEDSVIGIVIDRRAEEFLVDLNAPVLGLLPILSFEGATRKNIPNLKEGAVVYGRVVKA 124
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIA 191
+ ++P LSC DASGK + +G LK+GY+FE STGL+R LL +PT PVLE LGK L+FEIA
Sbjct: 125 HRDISPALSCLDASGKGSGYGPLKEGYLFECSTGLARSLLGTPTYPVLEALGKSLAFEIA 184
Query: 192 VGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
VG+NGRVWV +++P+T VLVSNAI+NSE LSA QQ I+V KLLQ K
Sbjct: 185 VGVNGRVWVKSDAPATTVLVSNAIINSECLSAAQQHILVQKLLQAAK 231
>gi|302786082|ref|XP_002974812.1| hypothetical protein SELMODRAFT_102189 [Selaginella moellendorffii]
gi|300157707|gb|EFJ24332.1| hypothetical protein SELMODRAFT_102189 [Selaginella moellendorffii]
Length = 223
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/224 (57%), Positives = 171/224 (76%), Gaps = 2/224 (0%)
Query: 16 VPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCV 74
+PGDVV DL++ N+ ++LG GL Q+ D V IKAG+L +K +K WVE SQKRY+P
Sbjct: 1 LPGDVVFDLAAQAQNKVLRLGSGLSQDADRVVAIKAGRLNHAK-SKLWVEGSQKRYIPSA 59
Query: 75 EDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG 134
ED+V+GIV+D +A+ F VD+ P + LP+L+FEG TR+NIP + +++Y RVVKA+
Sbjct: 60 EDSVIGIVIDRRAEEFLVDLNAPVLGLLPILSFEGATRKNIPNLKARAVVYGRVVKAHRD 119
Query: 135 MNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
++P LSC DASGK + +G LK+GY+FE STGL+R LL +PT PVLE LGK L+FEIAVG+
Sbjct: 120 ISPALSCLDASGKGSGYGPLKEGYLFECSTGLARSLLGTPTYPVLEALGKSLAFEIAVGV 179
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
NGRVWV +++P+T VLVSNAI+NSE LSA QQ I+V KLLQ K
Sbjct: 180 NGRVWVKSDAPATTVLVSNAIINSECLSAAQQHILVQKLLQAAK 223
>gi|384245743|gb|EIE19236.1| exonuclease component of the exosome [Coccomyxa subellipsoidea
C-169]
Length = 227
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 150/225 (66%), Gaps = 2/225 (0%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
++V PGDVV L +K+G GL + ++ +AG LR +K K WVE QKRY+
Sbjct: 3 QVVGPGDVVAVLPEQGQ--VKVGAGLYADGTNLHTSRAGLLRQTKAGKLWVEGRQKRYIS 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+G+V++ A+NF VDI P A L +L+FEG TRRN PK G L+Y RVV A+
Sbjct: 61 STGDDVVGVVLERHAENFVVDIGAPFPAVLNILSFEGATRRNRPKLAEGDLVYARVVLAH 120
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
++ ELSCTD GKA+ +G LK+G++ ST L+R LL+SPT PVLE LG L FEIA+
Sbjct: 121 RDIDTELSCTDTGGKASGYGPLKEGHLISCSTALARRLLASPTAPVLEALGNSLQFEIAI 180
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
G NGRVW++A +TV+L++NAI SE LSA Q K++V KLL RI
Sbjct: 181 GQNGRVWIDAAKATTVILIANAITRSEYLSADQSKLLVQKLLARI 225
>gi|356573669|ref|XP_003554980.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
max]
Length = 162
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/165 (66%), Positives = 128/165 (77%), Gaps = 13/165 (7%)
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
+ D LGIVVD ++ NF VDI+ FLPVLAFEGGTRRNIP+FEIG+L+YV+VVKANP
Sbjct: 11 IGDGPLGIVVDSRSHNFLVDIKDQLWHFLPVLAFEGGTRRNIPRFEIGTLIYVQVVKANP 70
Query: 134 GMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
GMNPELSCTDASG AAEFG LKDGYMF + GLSRMLL+SPTCPVL+ LG+
Sbjct: 71 GMNPELSCTDASGIAAEFGGLKDGYMFPCTMGLSRMLLNSPTCPVLDGLGQ--------- 121
Query: 194 LNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
VWVNA SP T +LV+N IMNSE+LS QQ+IM +KLLQRI+
Sbjct: 122 ----VWVNATSPHTTILVANEIMNSETLSGTQQRIMGEKLLQRIQ 162
>gi|25412304|pir||D84647 hypothetical protein At2g25350 [imported] - Arabidopsis thaliana
Length = 728
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/171 (62%), Positives = 129/171 (75%), Gaps = 16/171 (9%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
Q YVP ED VLGIVVDCK +N+++DI+GP +A LPVLAFEG RRN PKFE + L
Sbjct: 572 QIEYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFE--AKLLD 629
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V++ SGKAA FG LKDG+MFETSTGLSRMLLSSPTCPVLE LGK+L
Sbjct: 630 NVIE--------------SGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKL 675
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
SFE A GLNGR WV+A +P V++V+NA+MNSE+LS QQ+IMV+KLL++I
Sbjct: 676 SFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 726
>gi|307105285|gb|EFN53535.1| hypothetical protein CHLNCDRAFT_59733 [Chlorella variabilis]
Length = 257
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 152/228 (66%), Gaps = 3/228 (1%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRF-SKPNKYWVESSQ 67
++V K V PGDV++ L +++GGG++Q+ + + KAG LR +K K WVE+ Q
Sbjct: 8 DVVGKSVFPGDVLMALPE--TGVVRIGGGVQQDGELLVATKAGVLRREAKGGKLWVEARQ 65
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
KRY P ED V+G + D ++N+ VDI GP A LPVLAFEG T+RN P ++G L+Y R
Sbjct: 66 KRYTPSPEDVVIGRITDRHSENYGVDIGGPFRALLPVLAFEGATKRNRPHLQVGDLVYGR 125
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V A+ + P LSC D +GKA+ F LK G + E ST +R LLS P +L LG+ L
Sbjct: 126 VESAHRDLEPVLSCMDGAGKASGFAQLKGGMVIEVSTTHARSLLSRPPAALLSALGRSLQ 185
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
FE+AVGLNGRVW++A S STV+LV+NAI +SE L+A QQ+ +V LL+
Sbjct: 186 FELAVGLNGRVWLDAPSSSTVILVANAIQSSEFLTAAQQEQLVAALLK 233
>gi|297821935|ref|XP_002878850.1| hypothetical protein ARALYDRAFT_320337 [Arabidopsis lyrata subsp.
lyrata]
gi|297324689|gb|EFH55109.1| hypothetical protein ARALYDRAFT_320337 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/171 (60%), Positives = 124/171 (72%), Gaps = 23/171 (13%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
Q Y+P ED VLGIVVDCK +N++VDI+GP +A LPVLAFEG +RN PKFE
Sbjct: 553 QIEYIPRPEDHVLGIVVDCKGENYWVDIKGPQLALLPVLAFEGANKRNYPKFEA------ 606
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
SGKAA FG LKDG+MFETSTGLSRMLLSSPTCPVLE LGK+L
Sbjct: 607 -----------------KSGKAAVFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKL 649
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
SFE A GLNGR WV+A +P V++V+NA+MNSE+LS QQ+IMV+KLL++I
Sbjct: 650 SFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 700
>gi|440802744|gb|ELR23673.1| exosome component 3, putative [Acanthamoeba castellanii str. Neff]
Length = 233
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 151/224 (67%), Gaps = 4/224 (1%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
++V+PG+V+ + +T K+G G+ Q +++ K G LR SK N WV++ QKRYVP
Sbjct: 6 QVVMPGEVIGKVDPA--KTTKIGIGVIQNQENLIATKCGILR-SKGNHVWVDNRQKRYVP 62
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
+ED VLG+V++ +N VD+ A LP+LAFEG TR+N P ++G+++Y RVV AN
Sbjct: 63 VMEDMVLGVVLEKHVENAKVDLGSAVPAVLPMLAFEGATRKNRPNLQVGTVVYARVVVAN 122
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
M PEL CT A+GKA FG+L GYM + S L+R LL SP C VL+E+GK + FEIAV
Sbjct: 123 KDMEPELVCTAATGKAEGFGILAGGYMVKCSLSLARQLL-SPDCVVLQEIGKSMPFEIAV 181
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQR 236
G NGRVWV++ S +L++NAI+N E LS Q + MV +LL++
Sbjct: 182 GQNGRVWVHSNSSVQTMLIANAILNCEFLSPAQTRDMVQQLLKK 225
>gi|159485988|ref|XP_001701026.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
gi|158281525|gb|EDP07280.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
Length = 231
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 148/230 (64%), Gaps = 2/230 (0%)
Query: 8 ANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQ 67
A + K+V PGD VL + T++L GL +V+ +K G L+ ++ + ++E Q
Sbjct: 3 AAALGKVVGPGDKVLGVPE--QGTLRLSAGLTTHDGAVTSLKGGVLKSTRTGQLFLEGRQ 60
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
KRY+P D V+G++ D ++NF VDI GP A LP L+FEG TRRN P G L+Y R
Sbjct: 61 KRYIPAEGDVVVGVISDKHSENFTVDIGGPFNAVLPQLSFEGATRRNRPNLHPGDLVYAR 120
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
VV A+ +P LSC D++G+A+ FG LK+G + S+ L+R LL SPT PVLE LG L
Sbjct: 121 VVTAHRDTDPVLSCMDSAGRASGFGHLKEGMVLSCSSALARQLLGSPTAPVLEALGSGLQ 180
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FE+AVGLNGRVW++A + +T V+V+NAI SE + Q + MV ++L R+
Sbjct: 181 FELAVGLNGRVWLSAPTAATCVVVANAISESEFRTPAQVRTMVARVLSRL 230
>gi|291221134|ref|XP_002730573.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 233
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 153/228 (67%), Gaps = 2/228 (0%)
Query: 8 ANLVDKIVVPGDVVLDLS-SMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESS 66
A V+++V+PGD++ +LS S ++LG GLR + D+V V K G LRF +P+ +WV++
Sbjct: 2 AAHVNEVVLPGDILQELSDSEQYPKLRLGPGLRIDVDNVVVCKCGILRFREPSVFWVDTH 61
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
QKRYVP + +LGIV+ D F VDI +A L LAFEG T+RN P +IG L+Y
Sbjct: 62 QKRYVPVKGENILGIVISKAGDVFKVDIGSSEMATLSYLAFEGATKRNRPNVQIGDLIYG 121
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+++ AN M PE+ C D++G+++ G++ G+MF+ S GL R ++ SP C +++ LGK +
Sbjct: 122 KLLVANKDMEPEIVCIDSTGRSSGLGVISGGFMFKCSLGLVRKIV-SPDCQLMKLLGKHM 180
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
+E AVGLNGR+W+ A++ S + +SNA+ +E +S Q ++MV +++
Sbjct: 181 PYETAVGLNGRIWIKAKTLSHTIAISNAVCCAEYMSKKQTEVMVKQIV 228
>gi|357481441|ref|XP_003611006.1| Exosome complex component rrp40 [Medicago truncatula]
gi|355512341|gb|AES93964.1| Exosome complex component rrp40 [Medicago truncatula]
Length = 142
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 109/121 (90%)
Query: 118 FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP 177
+ +G+LLYVRV KANPGMNPELSCTDASGKA EFG LK+GYMFE STGLSRM+LS+PTCP
Sbjct: 22 YLVGALLYVRVAKANPGMNPELSCTDASGKAGEFGALKEGYMFECSTGLSRMVLSTPTCP 81
Query: 178 VLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
VL+ GK+LSFEIAVGLNGRV VNA SPST ++++NA++NSE+LS VQQKIM +KL++R+
Sbjct: 82 VLDTFGKKLSFEIAVGLNGRVSVNASSPSTTIIIANALINSEALSGVQQKIMAEKLVERV 141
Query: 238 K 238
+
Sbjct: 142 Q 142
>gi|302839521|ref|XP_002951317.1| hypothetical protein VOLCADRAFT_61387 [Volvox carteri f.
nagariensis]
gi|300263292|gb|EFJ47493.1| hypothetical protein VOLCADRAFT_61387 [Volvox carteri f.
nagariensis]
Length = 224
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 146/225 (64%), Gaps = 2/225 (0%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
++V PGD +L++ S T++L GL +V K G L+ ++ + ++E QKRY+P
Sbjct: 1 QVVGPGDKILEVPS--QGTLRLSAGLTTHEGAVVSTKGGILKATRTGQLYLEGRQKRYIP 58
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+G++VD ++NF VDI GP A LP L+FEG TRRN P G L+Y RVV+A+
Sbjct: 59 VEGDVVVGVIVDKHSENFTVDIGGPFNAVLPQLSFEGATRRNRPNIHPGDLVYARVVQAH 118
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+P LSC DA+G+AA FG LK G + S+ L+R LL SPT PVLE LG L FE+AV
Sbjct: 119 RDTDPVLSCVDAAGRAAGFGHLKGGMVLSISSALARQLLGSPTAPVLEALGSGLQFEMAV 178
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
GLNGRVW+ A + +T VLV+NAI SE + Q + MV +LL RI
Sbjct: 179 GLNGRVWLTAGTAATCVLVANAISESEFKTPQQVRTMVARLLSRI 223
>gi|281202144|gb|EFA76349.1| Putative nuclease [Polysphondylium pallidum PN500]
Length = 245
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 140/216 (64%), Gaps = 5/216 (2%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQKR 69
+DK V+PGD + +S + +++G GL Q D+V K G LRFSK +K YW+E+ QKR
Sbjct: 5 IDKFVLPGDCIGTISDLK---VRIGPGLIQVKDTVIASKCGVLRFSKYHKFYWIENEQKR 61
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
+VP VED V+GI+VD ++F VDI ++A L +FEG T+ N P ++G+L+Y RV+
Sbjct: 62 FVPQVEDMVIGIIVDKHPESFKVDIGSSSLALLSAYSFEGATKNNKPLLQVGNLVYCRVL 121
Query: 130 KANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFE 189
AN M PEL C KA +G L +GYMF S GLS LLS C +L+ LGK +++E
Sbjct: 122 IANKDMEPELVCMSVRNKAEGYGQLVNGYMFNCSLGLSHYLLSE-DCEILKILGKHIAYE 180
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
IAVG+NGRVWVN+ ++V+N I+NS+ + Q
Sbjct: 181 IAVGVNGRVWVNSMDNQQTIIVANTILNSQYMHDNQ 216
>gi|221121750|ref|XP_002163201.1| PREDICTED: exosome complex component RRP40-like [Hydra
magnipapillata]
Length = 246
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 141/230 (61%), Gaps = 3/230 (1%)
Query: 11 VDKIVVPGDVVLDLS--SMTNQTIKLGGGLRQECDSVSVIKAGKLRFSK-PNKYWVESSQ 67
+D + +PGD +L +S S T +K G GLRQE V KAG LR K P W++++Q
Sbjct: 11 IDTVFLPGDTILPISCLSSTEGFLKFGPGLRQEGQDVVAFKAGILRMKKKPLFIWIDTNQ 70
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
KRYV DTV+GI+ AD++ VDI A+L L FEG T+RN P +I L++ +
Sbjct: 71 KRYVAVKGDTVIGIITTRGADSYKVDIGSSQPAYLNNLLFEGATKRNKPNLKINDLVFAK 130
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
++ AN M PE+SC D + K+ G L DGYMF S GLSR LL P C VL LGK
Sbjct: 131 LIVANKDMEPEISCIDENNKSNNLGPLNDGYMFTVSLGLSRKLLQLPMCKVLSLLGKNFP 190
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FEI VGLNGR+W++++ + ++NAI++SE + + +MV +L++ I
Sbjct: 191 FEIVVGLNGRIWIHSKGIIDTIAIANAIVSSEFMDDNEVTLMVKQLIESI 240
>gi|297598089|ref|NP_001045055.2| Os01g0891400 [Oryza sativa Japonica Group]
gi|255673946|dbj|BAF06969.2| Os01g0891400 [Oryza sativa Japonica Group]
Length = 144
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/145 (65%), Positives = 106/145 (73%), Gaps = 20/145 (13%)
Query: 1 MEA-KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPN 59
ME+ KP + LVD VVPGDVVLDL+ MTNQTIKLG GLRQ+CD++ AG+LR SKPN
Sbjct: 1 MESRKPPPSALVDNHVVPGDVVLDLTEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPN 60
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWVESSQKR NF VDI+GP +AFLPVLAFEGGTRRNIPKFE
Sbjct: 61 KYWVESSQKR-------------------NFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE 101
Query: 120 IGSLLYVRVVKANPGMNPELSCTDA 144
IG+L+Y RVVKAN MNPELSC D
Sbjct: 102 IGTLIYARVVKANSIMNPELSCMDG 126
>gi|301090233|ref|XP_002895341.1| exosome complex exonuclease RRP40, putative [Phytophthora infestans
T30-4]
gi|262100455|gb|EEY58507.1| exosome complex exonuclease RRP40, putative [Phytophthora infestans
T30-4]
Length = 271
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 143/231 (61%), Gaps = 10/231 (4%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDS-VSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PGD V + TN +KLG GL+Q D + AG LR+ N+YWVE + KRY
Sbjct: 37 IVLPGDDVTATLTKTNHRVKLGSGLKQLPDERIVCTNAGILRYRPANRYWVEFNHKRYTA 96
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
++D V+GI+ D A+ + V+I A L LAF+G T+RN P +GSL+Y RV K N
Sbjct: 97 SIDDGVIGILTDRNAEFYRVNIGAAASATLGSLAFDGATKRNRPSLRLGSLVYARVSKTN 156
Query: 133 PGMNPELSC--------TDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
+ PE++C D A +G L DGY+F+TS GL++ LL C VL LGK
Sbjct: 157 ADVEPEITCEAPPSVTKKDWMTGLAIYGELNDGYVFKTSIGLAKSLLHED-CQVLASLGK 215
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
+L+FE+AVG+NG VWV+A++ + ++SNAIMNSE++S + MV +L++
Sbjct: 216 KLAFEVAVGVNGVVWVHAKTTKNITIISNAIMNSEAMSLSKVDAMVSRLVE 266
>gi|384487112|gb|EIE79292.1| hypothetical protein RO3G_03997 [Rhizopus delemar RA 99-880]
Length = 228
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 139/227 (61%), Gaps = 6/227 (2%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLR-FSKPNKYWVESSQKRYV 71
KIV+PGD + T T+ LG GLRQE D V KAG LR N++W+ES+QKRYV
Sbjct: 6 KIVLPGDAI---PVNTESTVILGPGLRQEGDEVVATKAGILRHLESGNRWWIESNQKRYV 62
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
++V+G V+ + F VDI A LP+LAFEG T+RN P + SL+Y RV A
Sbjct: 63 ASTGESVIGTVIAKLGEYFRVDIGTAHAAVLPMLAFEGATKRNRPNLSVRSLVYCRVAMA 122
Query: 132 NPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
N M EL C + +GK FG L GY+F S GL R LL +P P+L LG+ FE
Sbjct: 123 NRDMEAELECVNPTTGKGDGFGELVGGYVFTGSLGLCRRLL-NPNTPILTLLGEHFPFET 181
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
AVG+NGR+WVN+E P+ +L++NAI +SE LS + + MV L+ ++
Sbjct: 182 AVGMNGRIWVNSEEPNITILIANAIQHSEYLSEEECRQMVKDLISKL 228
>gi|328865190|gb|EGG13576.1| Putative nuclease [Dictyostelium fasciculatum]
Length = 286
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 132/212 (62%), Gaps = 5/212 (2%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQKR 69
+D+ VVPGD + + + +++G GL Q D V KAG LRFSK +K YW+E+ QKR
Sbjct: 60 IDQFVVPGDAIGQIDDLK---VRIGPGLLQNKDQVVASKAGVLRFSKFHKFYWIENEQKR 116
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP ED V+GI+++ ++F VDI + A L +FEG T+ N P IG+L+Y RV+
Sbjct: 117 YVPQAEDMVIGIILEKHPESFKVDIGSSSPAMLSAYSFEGATKSNKPLLSIGNLVYCRVL 176
Query: 130 KANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFE 189
AN M PEL C KA FG L GYMF S GLS LLS C +L+ +G + +E
Sbjct: 177 VANKDMEPELVCVSIRNKAEGFGQLIGGYMFNCSLGLSHYLLSE-DCSILKIVGTHIPYE 235
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESL 221
IAVG+NGRVWVN+ S ++ +N I+NS+ +
Sbjct: 236 IAVGVNGRVWVNSASNQNTIITTNTILNSQYM 267
>gi|66818409|ref|XP_642864.1| hypothetical protein DDB_G0276783 [Dictyostelium discoideum AX4]
gi|74876956|sp|Q7KWX9.1|EXOS3_DICDI RecName: Full=Putative exosome complex component rrp40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40
gi|60470923|gb|EAL68893.1| hypothetical protein DDB_G0276783 [Dictyostelium discoideum AX4]
Length = 237
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 134/217 (61%), Gaps = 5/217 (2%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQK 68
L D+ VVPGDV+ + + +++G GL Q D+V KAG LR+SK ++ YW+E+ QK
Sbjct: 4 LKDQFVVPGDVIGKIGDLK---VRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQK 60
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP VED V+G +++ A++F VDI A L +FEG T+ N P +G+L+Y RV
Sbjct: 61 RYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCRV 120
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C KA FG L GYM S GLS LLS C +L+ LGK + +
Sbjct: 121 TVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSED-CFLLQILGKHIPY 179
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
EIAVG+NGRVW+N+ S ++VSN I NS+ + Q
Sbjct: 180 EIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQ 216
>gi|390361523|ref|XP_781285.3| PREDICTED: exosome complex component RRP40-like isoform 2
[Strongylocentrotus purpuratus]
Length = 241
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 3/224 (1%)
Query: 13 KIVVPGDVVL-DLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYV 71
++V+PGD ++ + + I LG GLRQ+ + KAG L+ P+ +W++ QKRYV
Sbjct: 7 RVVLPGDSLMGHIPGELHGKITLGPGLRQDETKIFSTKAGILKQKNPHTFWIDCHQKRYV 66
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
P D VLG+V D F VDI G + A L LAFEG T+RN P ++G ++Y +++ A
Sbjct: 67 PAKGDKVLGVVTQKAGDVFRVDIGGQSQAILSYLAFEGATKRNRPNVQVGDVVYAKLLVA 126
Query: 132 NPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
N M PEL C D+SG++ G++ DG+MF + GL R LL CP+L+ LG+++S+EI
Sbjct: 127 NRDMEPELVCIDSSGRSQGLGVVGSDGFMFRCTLGLVRRLLLK-DCPMLKFLGEKISYEI 185
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
A+G+NGR+WV A+S T + V A+ N E +S K M+ KL+
Sbjct: 186 AIGMNGRIWVRAKSIHTTIAVVTALTNCEFMSEDDMKKMLRKLV 229
>gi|290977236|ref|XP_002671344.1| predicted protein [Naegleria gruberi]
gi|284084912|gb|EFC38600.1| predicted protein [Naegleria gruberi]
Length = 253
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 151/244 (61%), Gaps = 17/244 (6%)
Query: 11 VDKIVVPGDVV--LD--LSSMTNQT--IKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVE 64
V+ V+PGDV+ LD L+S Q+ +K+G GL Q ++ KAG LRF PN+Y+VE
Sbjct: 8 VNHAVLPGDVIGSLDEKLASTLQQSSIVKIGHGLLQLESNIIATKAGLLRFIPPNRYFVE 67
Query: 65 SSQKRYVPCVEDTVLGIVVD-CKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGS 122
++Q RYVP V D V+G+V D + + VDI +A LP + F+G TRRN P GS
Sbjct: 68 NNQHRYVPMVGDMVIGVVKDKVPVEQYSVDIFAHQGLALLPFIGFDGATRRNRPDLGPGS 127
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAE--------FGLLKDGYMFETSTGLSRMLLSSP 174
L+Y RV AN ++ E++C + G + FG LK GY+ E S G++R LL P
Sbjct: 128 LVYGRVTLANKDLDLEITCESSPGMKKKDWSTGKSVFGELKGGYVTECSLGMARKLLD-P 186
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
C +L+ L + +SFEIA+GLNGRVW+N+E+P+ +VL+ NAI NSE L+ Q + M+ L
Sbjct: 187 NCYLLKLLSEHVSFEIAIGLNGRVWINSEAPNDIVLICNAIQNSEHLTQDQVQQMLTFLF 246
Query: 235 QRIK 238
+ K
Sbjct: 247 KSKK 250
>gi|330846337|ref|XP_003294994.1| hypothetical protein DICPUDRAFT_160096 [Dictyostelium purpureum]
gi|325074419|gb|EGC28480.1| hypothetical protein DICPUDRAFT_160096 [Dictyostelium purpureum]
Length = 233
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 123/194 (63%), Gaps = 5/194 (2%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQK 68
LVD+ VVPGDV+ + + +++G GL Q ++V KAG LR+SK +K YW+E+ QK
Sbjct: 4 LVDEFVVPGDVIGKIGDLK---VRIGPGLLQSKETVVATKAGVLRYSKFHKFYWIENEQK 60
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP VED V+G +V+ A++F VDI A L +FEG T+ N P IG+L+Y RV
Sbjct: 61 RYVPQVEDMVIGTIVEKHAESFKVDIGSSCNALLSAYSFEGATKSNKPLLNIGNLVYARV 120
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C KA FG L GYM S GLS LLS C +L+ LGK + +
Sbjct: 121 TVANRDMEPEIVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSE-DCYILQVLGKHIPY 179
Query: 189 EIAVGLNGRVWVNA 202
EIAVG+NGRVWVN+
Sbjct: 180 EIAVGVNGRVWVNS 193
>gi|332025490|gb|EGI65653.1| Exosome complex exonuclease RRP40 [Acromyrmex echinatior]
Length = 241
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 140/226 (61%), Gaps = 9/226 (3%)
Query: 11 VDKIVVPGDVVLDLSSMTNQT------IKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVE 64
VD +V+PGD + +++S + + LG GLR+E D+V + KAG LR +P Y+V+
Sbjct: 5 VDDVVMPGDRLTNITSFKKENKNEKEIVILGPGLRREDDAVLICKAGVLRKREPAVYYVD 64
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
S QKRY+P + V+GIV D + VDI G A L LAFEG T++N P +IG L+
Sbjct: 65 SYQKRYIPSRGENVVGIVTQKSGDIYKVDIGGSEQATLSYLAFEGATKKNRPDVQIGDLV 124
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y +++ A+ M PEL C D+ GK E G+L DG MF S L R LL +P CP+ LG
Sbjct: 125 YGKLLVASKDMEPELVCVDSHGKENELGMLSSDGMMFICSLSLVRKLL-NPECPLFRLLG 183
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE-SLSAVQQKI 228
+ ++E+A G+NGR+W+ A S + V+NAI+ +E ++S+ QK+
Sbjct: 184 RNQAYELAAGMNGRIWIKARSVQETIAVANAILAAEFTVSSEMQKL 229
>gi|390361521|ref|XP_003729944.1| PREDICTED: exosome complex component RRP40-like isoform 1
[Strongylocentrotus purpuratus]
Length = 226
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 32 IKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFF 91
+ LG GLRQ+ + KAG L+ P+ +W++ QKRYVP D VLG+V D F
Sbjct: 12 MTLGPGLRQDETKIFSTKAGILKRKNPHTFWIDCHQKRYVPAKGDKVLGVVTQKAGDVFR 71
Query: 92 VDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEF 151
VDI G + A L LAFEG T+RN P ++G ++Y +++ AN M PEL C D+SG++
Sbjct: 72 VDIGGQSQAILSYLAFEGATKRNRPNVQVGDVVYAKLLVANRDMEPELVCIDSSGRSQGL 131
Query: 152 GLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVL 210
G++ DG+MF + GL R LL CP+L+ LG+++S+EIA+G+NGR+WV A+S T +
Sbjct: 132 GVVGSDGFMFRCTLGLVRRLLLK-DCPMLKFLGEKISYEIAIGMNGRIWVRAKSIHTTIA 190
Query: 211 VSNAIMNSESLSAVQQKIMVDKLL 234
V A+ N E +S K M+ KL+
Sbjct: 191 VVTALTNCEFMSEDDMKKMLRKLV 214
>gi|156369794|ref|XP_001628159.1| predicted protein [Nematostella vectensis]
gi|156215128|gb|EDO36096.1| predicted protein [Nematostella vectensis]
Length = 240
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 7/238 (2%)
Query: 6 STANLVDKIVVPGDVVL---DL---SSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPN 59
++ ++++++V+PGD+V DL S +KLG GLRQE + V K+G R P
Sbjct: 3 ASLHMLNRVVLPGDIVCTTQDLKVCSQNPRMKLKLGPGLRQEGEQVLAYKSGVFRHRAPA 62
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
YW++++QKRYVP ++ V+GI+ + +++ VDI A L LAFEG T+RN P +
Sbjct: 63 VYWIDTNQKRYVPVKDERVIGIISNRGGESYKVDIGTSNPATLSSLAFEGATKRNKPNLQ 122
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVL 179
IG L+Y R+ AN M PEL CTD SGK+ G L G+MF S GL+R LL+ +L
Sbjct: 123 IGDLVYCRLSIANKDMEPELDCTDGSGKSTGLGPLSGGFMFNCSLGLTRKLLNKDFI-LL 181
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ LGK FE VGLNGRVW+NA++ ++ +SNAI NSE + Q + MV +L++ I
Sbjct: 182 KLLGKYFPFECTVGLNGRVWINAKTTINIIAISNAISNSEFMDNQQIETMVRQLVEGI 239
>gi|328773742|gb|EGF83779.1| hypothetical protein BATDEDRAFT_29097 [Batrachochytrium
dendrobatidis JAM81]
Length = 234
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 133/203 (65%), Gaps = 7/203 (3%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
IVVP DV+ D++S ++LG GL Q+ D++ IK+G + + N+ W+ +SQK+Y+P
Sbjct: 10 IVVPSDVI-DVAS----PLRLGPGLSQKQDTIVAIKSGFVTEASGNRLWLTASQKKYIPA 64
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
+ + VL +V +++ VDI GP A LPVLAFEG T+RN P E+G+L+Y RV AN
Sbjct: 65 LGEPVLAVVSSKHMESYRVDIGGPHPAALPVLAFEGATKRNKPNLEVGALVYARVSLANK 124
Query: 134 GMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
M PE+ C + +SGKA FG L DG+M + S G+ R L++ +L ++ FE A+
Sbjct: 125 DMEPEIECINPSSGKADGFGELNDGFMIKCSLGMCRSLMAKNNT-ILAQISSLFPFETAI 183
Query: 193 GLNGRVWVNAESPSTVVLVSNAI 215
G+NGRVW+NAE+P +++++N I
Sbjct: 184 GMNGRVWINAETPKQIIMIANLI 206
>gi|224033863|gb|ACN36007.1| unknown [Zea mays]
Length = 104
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/103 (79%), Positives = 94/103 (91%)
Query: 135 MNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
MNPELSC DA+GKAAEFG LKDGYMF+TSTG+SRMLLSSPTCPVLE LGK+LSFEIAVGL
Sbjct: 1 MNPELSCMDATGKAAEFGQLKDGYMFDTSTGMSRMLLSSPTCPVLEVLGKKLSFEIAVGL 60
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
NGRVWVNA + STV+LVSNAIM SESLS ++Q+ MV+ LL+R+
Sbjct: 61 NGRVWVNAPAASTVILVSNAIMRSESLSGIKQRAMVENLLERL 103
>gi|195063881|ref|XP_001996460.1| GH25200 [Drosophila grimshawi]
gi|193895325|gb|EDV94191.1| GH25200 [Drosophila grimshawi]
Length = 232
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 14 IVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PG+ V + + + I LG GLR+ D V KAG LR +PN +WV+S Q+RYVP
Sbjct: 7 IVMPGERVTSVEDVAKGKRIILGPGLRRVDDKVVASKAGPLRHKEPNTFWVDSYQRRYVP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D ++GIV D + VDI A + LAFE T++N P G LLY RV+ AN
Sbjct: 67 ARGDLIIGIVKARAGDMYRVDIGSADTASISYLAFEAATKKNRPDLNPGDLLYARVLNAN 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C +++GK + G+L+DG+ F+ S L R+LL +CP L + +L +EIAV
Sbjct: 127 ADIEPELVCVNSNGKHGKLGVLQDGFFFKCSLNLGRLLLRD-SCPALAAIKDELPYEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSES 220
G+NGR+WV A S V ++NAIM E
Sbjct: 186 GVNGRIWVKAHSTRETVGLANAIMTLEH 213
>gi|320165398|gb|EFW42297.1| exosome component 3 [Capsaspora owczarzaki ATCC 30864]
Length = 275
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 145/266 (54%), Gaps = 40/266 (15%)
Query: 11 VDKIVVPGDVVLDL-------------SSMTNQTI----------KLGGGLRQECDSV-S 46
+ +V+PGD + DL S+ +N ++ +LG GL QE V +
Sbjct: 11 IGSVVLPGDALGDLEAGDSADPADGPGSTTSNSSLHAFTQHGGRLRLGPGLAQEGGRVIA 70
Query: 47 VIKAGKLR---------------FSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFF 91
+AG L+ S+ + ++ SSQKRYVP ++ V+GI+ D + F
Sbjct: 71 ASRAGVLQGSMGAASTGTGANAHSSQVARLYIASSQKRYVPAKDELVVGIITDRMGEAFK 130
Query: 92 VDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEF 151
VDI A L LAFEG T+RN P IG+L+Y ++ AN M PE+ C DA+ KAA
Sbjct: 131 VDIGAAASASLSFLAFEGATKRNRPNLAIGALVYGKLAVANKDMEPEMVCIDAADKAAGM 190
Query: 152 GLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLV 211
G L GY+ S+GL+R LLS VL LGK + E A+GLNGR W+NA++P VVL+
Sbjct: 191 GELTGGYLIHISSGLTRRLLSRDPA-VLIALGKHFALETAIGLNGRTWINAQTPQQVVLI 249
Query: 212 SNAIMNSESLSAVQQKIMVDKLLQRI 237
+NAI NSE ++ Q MV +L+Q +
Sbjct: 250 ANAIQNSEFMTVAQINAMVQRLVQAL 275
>gi|237648986|ref|NP_001153670.1| exosome complex exonuclease Rrp40 [Bombyx mori]
gi|224814347|gb|ACN65392.1| exosome complex exonuclease [Bombyx mori]
Length = 236
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 134/224 (59%), Gaps = 2/224 (0%)
Query: 11 VDKIVVPGDVVLDLSSMTNQ-TIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+D +V+PGD ++ + + + LG GLR+E + V + K G LR PN YWV++ QKR
Sbjct: 5 IDDVVLPGDHCPEIVAAGEKGKVLLGPGLRKEINGVFITKPGVLRKRTPNTYWVDNYQKR 64
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP + V+G VV D F VD+ G A L L+FEG T++N P + G ++Y +++
Sbjct: 65 YVPSRGENVIGTVVQKAGDIFRVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKML 124
Query: 130 KANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFE 189
A+ M PEL C D+ GK G+L++G++F+ S L R +L +P CP+L L + FE
Sbjct: 125 NASKDMEPELVCVDSHGKKGRLGVLEEGFVFKCSLNLIRKIL-NPHCPLLNSLKNEWPFE 183
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+A G+NGR+W+ A + + + NAI+ SE LS + K M +
Sbjct: 184 LAAGMNGRIWIKANTMRETLALGNAILGSEYLSNDEIKSMCKNI 227
>gi|242018143|ref|XP_002429540.1| Exosome complex exonuclease RRP40, putative [Pediculus humanus
corporis]
gi|212514488|gb|EEB16802.1| Exosome complex exonuclease RRP40, putative [Pediculus humanus
corporis]
Length = 236
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 4/228 (1%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQK 68
+L++ IVVPGDV+LDL++ I +G GLR + + K G L N YWV+S QK
Sbjct: 3 SLINSIVVPGDVILDLTAEVKSKIIVGPGLRVSSNKIIATKCGILHKKGSNVYWVDSRQK 62
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP +T++G++ + D F V+I A LP LAFEG T++ P +G ++Y R+
Sbjct: 63 RYVPAKGETIVGVITNKSGDIFKVEIGASEQAQLPYLAFEGATKKFRPNINVGDVVYARL 122
Query: 129 VKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGK--Q 185
+ AN + PEL C D+ GK + G+L DG+MF S L R +L +P CP+++ + Q
Sbjct: 123 LVANKDLEPELVCVDSHGKKGKLGVLPSDGFMFNCSLNLVRKIL-NPKCPLIDTFQRTLQ 181
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+ FEIA G+NG +W+ A++ + + V+NAI+ +E S + K + + +
Sbjct: 182 IPFEIAAGMNGNIWIKAKTVNETIAVANAILAAEYKSDSEIKELCENI 229
>gi|194762347|ref|XP_001963311.1| GF14006 [Drosophila ananassae]
gi|190617008|gb|EDV32532.1| GF14006 [Drosophila ananassae]
Length = 232
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
Query: 14 IVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PG+ + + + + + LG GLR+ D+V KAG LR +PN +WV++ Q+RYVP
Sbjct: 7 IVMPGERIASIEEVAKTKRVILGPGLRRVDDTVVASKAGPLRHKEPNTFWVDNYQRRYVP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D VLGIV D + VDI P A + LAFE T++N P G L+Y RV+ A+
Sbjct: 67 ARGDLVLGIVRSKAGDLYRVDIGAPETASISYLAFESATKKNRPDLNPGDLIYARVLNAS 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C +++GK + G+L DG+ F+ S L R+LL CP+L + +QL +EIAV
Sbjct: 127 ADIEPELVCVNSNGKRGKLGVLPDGFFFKCSLNLGRVLLRE-NCPILAAITRQLPYEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
G+NGR+WV A S V ++ AI+ E + + D L
Sbjct: 186 GVNGRIWVKAHSLRETVALAKAILALEQAGYAETDKVCDNL 226
>gi|428170248|gb|EKX39175.1| hypothetical protein GUITHDRAFT_76632, partial [Guillardia theta
CCMP2712]
Length = 204
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 128/195 (65%), Gaps = 5/195 (2%)
Query: 29 NQTIKLGGGLRQECDSVSVIKAGKLRFSKPN---KYWVESSQKRYVPCVEDTVLGIVVDC 85
N + G G+ Q+ +++ I+AG+LR SK + W++S+ KRYVP ED V+GIVVD
Sbjct: 1 NHAFQFGCGISQDGENLVAIRAGQLRTSKTGIEMRMWIDSNTKRYVPVDEDLVIGIVVDK 60
Query: 86 KADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDAS 145
+ +++ +D+RGP+ L L+FEG T+RN PK EIGSL+Y RV + ELSC +
Sbjct: 61 RTEDYRLDVRGPSYGVLSALSFEGATKRNKPKLEIGSLVYCRVSNSYRDAESELSCLSLT 120
Query: 146 GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRV-WVNAES 204
K A FG L+ G+M ETS G +R LL P V+ LG+ L++EIAVG NGRV W+ ++S
Sbjct: 121 YKKAVFGELEGGHMIETSIGYARSLL-LPENVVVNCLGRHLAYEIAVGCNGRVIWIKSDS 179
Query: 205 PSTVVLVSNAIMNSE 219
+ +L++NAI N+E
Sbjct: 180 VAKTILIANAIRNAE 194
>gi|405950156|gb|EKC18159.1| Exosome complex exonuclease RRP40 [Crassostrea gigas]
Length = 236
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 139/226 (61%), Gaps = 4/226 (1%)
Query: 11 VDKIVVPGDVVLDL-SSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V K+V+PG+ + +L S + + LG G+RQE D V V K G L+F +PN YWV+S QKR
Sbjct: 5 VGKVVLPGENLTNLLGSDSTLKVVLGPGIRQETDLVIVSKPGVLKFKEPNIYWVDSFQKR 64
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P D+V+GI+ D F VD+ +A LP LAFE T+RN P ++G ++Y + +
Sbjct: 65 YIPQRGDSVIGIITTKAGDVFRVDVGASELATLPYLAFESATKRNRPDVKVGDIVYCKFL 124
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYM-FETSTGLSRMLLSSPTCPVLEELGKQLS 187
AN M PEL C D SGK+A G++ +DG M + L + +L SP C + + LGK L
Sbjct: 125 VANKDMEPELVCIDGSGKSAGLGVIGRDGGMLLQVPINLVQKVL-SPECVLFKTLGKNLK 183
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+E+AVG+NGR+W+ + + V+NAI S+ ++ +IM ++
Sbjct: 184 YEVAVGMNGRIWIKCHTVMETIAVANAISVSQHMTNQDIQIMCSQM 229
>gi|195387098|ref|XP_002052241.1| GJ22758 [Drosophila virilis]
gi|194148698|gb|EDW64396.1| GJ22758 [Drosophila virilis]
Length = 232
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 128/207 (61%), Gaps = 2/207 (0%)
Query: 14 IVVPGD-VVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
I++PG+ V + + ++ I LG GLR+ + V KAG LR +PN +WV++ Q+RYVP
Sbjct: 7 IIMPGERVTIVEDAAKSKRIILGPGLRRVDEKVVATKAGPLRHKEPNTFWVDNYQRRYVP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D ++GIV D + VDI +A + LAFE T++N P G LLY RV+ AN
Sbjct: 67 ARGDLIIGIVKARAGDLYRVDIGAADLASISYLAFEAATKKNRPDLNPGDLLYARVLNAN 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C +++GK + G+L+DG+ F+ S L R+LL +CP L L ++L +EIAV
Sbjct: 127 ADIEPELVCVNSNGKRGKLGVLQDGFFFKCSLNLGRLLLRE-SCPALAALTEELPYEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSE 219
G+NGR+WV A S V ++NAIM E
Sbjct: 186 GVNGRIWVKAHSTRETVGLANAIMTLE 212
>gi|195115371|ref|XP_002002230.1| GI17269 [Drosophila mojavensis]
gi|193912805|gb|EDW11672.1| GI17269 [Drosophila mojavensis]
Length = 232
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 127/207 (61%), Gaps = 2/207 (0%)
Query: 14 IVVPGDVVLDL-SSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+++PG+ V + + N+ + LG GLR+ D V KAG LR PN +WV++ Q+RYVP
Sbjct: 7 VIMPGERVRVVEDAAKNKRVILGPGLRRLDDKVVASKAGPLRHKDPNTFWVDNYQRRYVP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D ++GIV D + VDI A + LAFE T++N P G LLY RV+ AN
Sbjct: 67 ARGDLIIGIVKARVGDIYRVDIGSADTAAISYLAFEAATKKNRPDLNPGDLLYARVLNAN 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C +++GK + G+L+DG+ F+ S L+R+LL +CP L L +L FEIAV
Sbjct: 127 ADIEPELVCVNSNGKRGKLGVLQDGFFFKCSLNLARLLLRE-SCPALAALTDELPFEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSE 219
G+NGR+WV A S V ++NAIM+ E
Sbjct: 186 GVNGRIWVKAHSMRETVGLANAIMSLE 212
>gi|195148780|ref|XP_002015341.1| GL19652 [Drosophila persimilis]
gi|194107294|gb|EDW29337.1| GL19652 [Drosophila persimilis]
Length = 232
Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 2/223 (0%)
Query: 12 DKIVVPGDVVLDLSSMTNQT-IKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
+ IV+PG+ + + + + + LG GLR+ D+V KAG LR +P YW+++ Q+RY
Sbjct: 5 NAIVMPGERITIIEEVAKEKRVILGPGLRRLDDTVVASKAGPLRHKEPGTYWIDNYQRRY 64
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
VP D VLGI+ D + VDI IA + LAFE T++N P G ++Y RV+
Sbjct: 65 VPARGDLVLGIIKGKAGDQYRVDIGSADIASISYLAFEAATKKNRPDLNPGDIIYARVLN 124
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
A+ + PEL C +++GK + GLL DG+ F+ + L R+LL CP L L ++L +EI
Sbjct: 125 ASADIEPELVCVNSNGKRGKLGLLADGFFFKCTLNLGRLLLRE-NCPALAALTRELPYEI 183
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
A+G+NGR+WV A S + +SNAI+ E + + D L
Sbjct: 184 AIGVNGRIWVKANSLRETMALSNAILTMEQAGYTEIDKICDSL 226
>gi|125986325|ref|XP_001356926.1| GA16580 [Drosophila pseudoobscura pseudoobscura]
gi|54645252|gb|EAL33992.1| GA16580 [Drosophila pseudoobscura pseudoobscura]
Length = 232
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 2/223 (0%)
Query: 12 DKIVVPGDVVLDLSSMTNQT-IKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
+ IV+PG+ + + + + + LG GLR+ D+V KAG LR +P YW+++ Q+RY
Sbjct: 5 NAIVMPGERITIIEEVAKEKRVILGPGLRRLDDTVVASKAGPLRHKEPGTYWIDNYQRRY 64
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
VP D VLGI+ D + VDI IA + LAFE T++N P G ++Y RV+
Sbjct: 65 VPARGDLVLGIIKGKAGDQYRVDIGSADIASISYLAFEAATKKNRPDLNPGDIIYARVLN 124
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
A+ + PEL C +++GK + GLL DG+ F+ + L R+LL CP L L ++L +EI
Sbjct: 125 ASADIEPELVCVNSNGKRGKLGLLADGFFFKCTLNLGRLLLRE-NCPALAALTRELPYEI 183
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
A+G+NGR+WV A S + +SNAI+ E + + D L
Sbjct: 184 AIGVNGRIWVKANSLRETMALSNAILTMEQAGYTEIDKICDSL 226
>gi|198424896|ref|XP_002124262.1| PREDICTED: similar to MGC84934 protein [Ciona intestinalis]
Length = 232
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 143/226 (63%), Gaps = 7/226 (3%)
Query: 13 KIVVPGDVVL-DLSSMTNQT-IKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
+IV+PGDV+ ++S+T + +KLG GL E D V V K G LR P+ +WV+ QKRY
Sbjct: 9 QIVIPGDVITKHVNSITGDSDVKLGPGLYHEADEVKVCKPGVLRHKTPDTFWVDCHQKRY 68
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
VP D V+G+V + D + VDI +A L ++FEG ++RN P G L++ +++
Sbjct: 69 VP--SDNVVGVVTSRQGDMYKVDIGASHLAVLNYMSFEGASKRNRPNVTNGDLIFGKLIV 126
Query: 131 ANPGMNPELSCTDA-SGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+SC D +GKA G+L D G+ F L+R LL SP+ ++ ELG +++F
Sbjct: 127 ANKDMEPEVSCVDPNNGKANGLGVLSDRGFSFHVPLNLARKLL-SPSFTLIHELGARITF 185
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
EI VG+NGR++++ SP V+L+ + I+++E LS Q + +++++
Sbjct: 186 EITVGMNGRIFLSCNSPKFVILIMDVILSAEYLSNEQMEKLLNEMF 231
>gi|299471081|emb|CBN78940.1| RNA binding protein [Ectocarpus siliculosus]
Length = 249
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 138/234 (58%), Gaps = 10/234 (4%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQEC-DSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PGD V + ++ T ++++LG GL Q D V +AG LR+ P YWVES+ +RY
Sbjct: 9 VVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGA 68
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
VED VLGIV D AD++ V+I G A L +L F+G ++R+ P GSL++ RV N
Sbjct: 69 RVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVN 128
Query: 133 PGMNPELSCT--------DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
M EL+CT D + FG L+ G M S LS+ L+ P C VL+ L K
Sbjct: 129 KDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKS-LTKPDCRVLKSLAK 187
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ FE+A GLNG WV++ S + +++ NAI+NSE ++ Q MVD+L + +K
Sbjct: 188 HMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRLAKHMK 241
>gi|443730924|gb|ELU16219.1| hypothetical protein CAPTEDRAFT_131167 [Capitella teleta]
Length = 231
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 2/227 (0%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
V I +PGD ++D T+ I LG GLR+E + V + K GKL F PN YWV+S KRY
Sbjct: 4 VGGIGLPGDKIVD--KETDGRIVLGPGLRKETEHVLMTKPGKLCFKDPNIYWVDSHHKRY 61
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
+P + VLG+V + D F VDI G A L LAFEG T+RN P +IG ++ +++
Sbjct: 62 IPVRGENVLGVVTNKSGDTFKVDIGGSEQASLSYLAFEGATKRNRPDVKIGDQVFCKLLV 121
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
A+ PE+ C D+SGK+ G+++DG M T+ + SP C +L+ LG L +EI
Sbjct: 122 ASKHTEPEVVCIDSSGKSNGLGVIRDGGMTITTPCNHIRKILSPDCVLLKTLGNSLPYEI 181
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
A+G+NG++W+ + + ++NAI +E ++ Q +M KL+ +
Sbjct: 182 AIGMNGKIWIKGRTTKETIALTNAIACAEYMNNEQISLMCRKLVNSL 228
>gi|348673532|gb|EGZ13351.1| hypothetical protein PHYSODRAFT_302978 [Phytophthora sojae]
Length = 434
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 145/231 (62%), Gaps = 10/231 (4%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDS-VSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PGD V + T + +KLG GL+Q D + AG LR+ N+YWVE + KRYV
Sbjct: 200 VVLPGDDVTATLTKTTRRVKLGAGLKQLPDERIVCTNAGVLRYRPANRYWVEFNHKRYVA 259
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
++D V+G+V D A+ + V+I A L LAF+G T+RN P +GSL+Y RV K N
Sbjct: 260 SMDDGVIGVVTDRNAEFYRVNIGAAASATLGALAFDGATKRNRPSLRLGSLVYARVSKTN 319
Query: 133 PGMNPELSC--------TDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
P + PE++C D A +G L DGY+F+TS GL++ LL C VL LGK
Sbjct: 320 PDVEPEITCEAPPSVTRKDWMTGLAIYGELNDGYVFKTSIGLAKSLLHE-DCQVLASLGK 378
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
+L+FE+AVG+NG VWVNA++ + ++SNAIMNSE++S + MV +L++
Sbjct: 379 KLAFEVAVGVNGVVWVNAKTTKNITIISNAIMNSETMSPSEVDAMVSRLVE 429
>gi|157105451|ref|XP_001648874.1| hypothetical protein AaeL_AAEL014498 [Aedes aegypti]
gi|108869016|gb|EAT33241.1| AAEL014498-PA [Aedes aegypti]
Length = 237
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 135/227 (59%), Gaps = 4/227 (1%)
Query: 10 LVDKIVVPGDVVLDLSSM--TNQTIKLGGGLRQECD-SVSVIKAGKLRFSKPNKYWVESS 66
LVD V+PG V + M +N+ + LG GLRQ+ D +V V K+G LR PN +WV+
Sbjct: 4 LVDAPVLPGFRVEEAIEMAKSNKKVVLGPGLRQDKDDAVLVCKSGVLRKKTPNTFWVDCY 63
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
QKRYVP + V+GIV D F VDI G A L LAFEG T++N P +G +
Sbjct: 64 QKRYVPNRSEIVVGIVTQKAGDIFRVDIGGSEPASLSYLAFEGATKKNRPDVNVGDAICA 123
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
R++ AN + PEL C D+ GK + G+L+DG++F S L R +L +P C L+ L K++
Sbjct: 124 RLLIANRDLEPELICVDSHGKKGKLGVLQDGFVFNCSINLVRKIL-NPKCVFLDLLAKEM 182
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+FEIA G+NGR+W+ ++ + V NAI+ E S + K + D +
Sbjct: 183 AFEIAAGMNGRIWIKGKTVKETIAVGNAILAVEFKSNDELKELCDDI 229
>gi|225581104|gb|ACN94677.1| GA16580 [Drosophila miranda]
Length = 233
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 3/224 (1%)
Query: 12 DKIVVPGD--VVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+ IV+PG+ +++ + + + LG GLR+ D+V KAG LR +P YW+++ Q+R
Sbjct: 5 NAIVMPGERITIIEEVAKKEKRVILGPGLRRLDDTVVATKAGPLRHKEPGTYWIDNYQRR 64
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P D VLGI+ D + V+I IA + LAFE T++N P G ++Y RV+
Sbjct: 65 YMPARGDLVLGIIKGKAGDQYRVEIGSADIASISYLAFEAATKKNRPDLNPGDIIYARVL 124
Query: 130 KANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFE 189
A+ + PEL C +++GK + GLL DG+ F+ + L R+LL CP L L ++L +E
Sbjct: 125 NASADIEPELVCVNSNGKRGKLGLLADGFFFKCTLNLGRLLLRE-NCPALAALTRELPYE 183
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
IA+G+NGR+WV A S + +SNAI+ E + + D L
Sbjct: 184 IAIGVNGRIWVKANSLRETMALSNAILTMEQAGYTEIDKICDSL 227
>gi|327278779|ref|XP_003224138.1| PREDICTED: exosome complex exonuclease RRP40-like [Anolis
carolinensis]
Length = 257
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 146/245 (59%), Gaps = 21/245 (8%)
Query: 11 VDKIVVPGDVVL------------DLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFS 56
+ ++V+PG+ +L L++ Q +L G GLR+ + + V K G LR+
Sbjct: 13 IGRVVMPGEALLLPGHAEADGERLRLAANGPQKGRLVCGPGLRRGGEGLLVTKCGLLRYR 72
Query: 57 KPNK-----YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT 111
P YWV+S Q+RYVP D V+GIV D F VD+ G A L LAFEG T
Sbjct: 73 GPGSGSGGVYWVDSQQRRYVPVKGDHVIGIVTAKAGDIFKVDVGGSEQASLSYLAFEGAT 132
Query: 112 RRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRML 170
+RN P ++G L+Y + + AN M PE+ C D+SG+A G++ +DG++F+ S GL R L
Sbjct: 133 KRNRPNVQVGDLIYGQFIIANKDMEPEMVCIDSSGRANGMGVIGQDGFLFKVSLGLIRKL 192
Query: 171 LSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMV 230
L +P C ++++LG+ FE+ +G+NGR+WV A++ ++V+N + E ++A Q+K +V
Sbjct: 193 L-APDCEIIQDLGQLYPFELVLGMNGRIWVKAKTIQQTLIVANVLEACEHMTAEQRKQVV 251
Query: 231 DKLLQ 235
K+L+
Sbjct: 252 AKVLE 256
>gi|195443258|ref|XP_002069343.1| GK20196 [Drosophila willistoni]
gi|194165428|gb|EDW80329.1| GK20196 [Drosophila willistoni]
Length = 235
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 14 IVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PG+ V + + ++ + LG GLR+ D+V KAG LR PN +WV++ Q+RYVP
Sbjct: 10 IVMPGERVTSIEDLAKSKRVILGPGLRRLDDTVVASKAGPLRHKDPNTFWVDNYQRRYVP 69
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D VLG+V D + VDI A + LAFE T++N P G L+Y RV+ A+
Sbjct: 70 ARGDLVLGLVKAKAGDLYRVDIGSADTASISFLAFEAATKKNRPDLNPGDLIYARVLNAS 129
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C +++GK + G+L DG+ F+ S L R+LL CP L L +QL +EIAV
Sbjct: 130 ADIEPELVCVNSNGKRGKLGVLSDGFFFKCSLNLGRVLLRE-NCPALTALTRQLPYEIAV 188
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
G+NGR+W+ A S + +SN+I++ E + Q
Sbjct: 189 GVNGRIWLKARSMRETMALSNSILSLEQTNYSQ 221
>gi|312385541|gb|EFR30016.1| hypothetical protein AND_00665 [Anopheles darlingi]
Length = 234
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 130/218 (59%), Gaps = 3/218 (1%)
Query: 10 LVDKIVVPGDVVLDLSSM--TNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQ 67
+ K V+ GDV+++ M T++ + LG GLR + D V K G+L+ PN +WV++ Q
Sbjct: 1 MASKTVLAGDVIIEPMEMIKTSKKVILGPGLRMDQDVVRASKCGQLKTKPPNTFWVDAHQ 60
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
KRYVP + V+G+V+ D F VDI A L +AFEG T++N P IG ++Y R
Sbjct: 61 KRYVPTRGELVVGVVMAKAGDIFRVDIGSSETASLSYVAFEGATKKNRPDVNIGDIVYAR 120
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
++ A+P + PEL C D+ GK + G+L DG++ S L R +L +P C L L K+L
Sbjct: 121 LLIAHPDVEPELVCVDSHGKKGKLGILHDGFLLSCSLNLIRKIL-NPKCTFLSLLSKELK 179
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
FE+A G+NGR+W+ ++ + + NAI+ E + + Q
Sbjct: 180 FELAAGMNGRLWIRGKTVKETIAIGNAILALEFVPSDQ 217
>gi|157134439|ref|XP_001663303.1| hypothetical protein AaeL_AAEL013103 [Aedes aegypti]
gi|108870467|gb|EAT34692.1| AAEL013103-PA [Aedes aegypti]
gi|122937754|gb|ABM68596.1| AAEL013103-PA [Aedes aegypti]
Length = 237
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 135/227 (59%), Gaps = 4/227 (1%)
Query: 10 LVDKIVVPGDVVLDLSSM--TNQTIKLGGGLRQECD-SVSVIKAGKLRFSKPNKYWVESS 66
LVD V+PG V + M +N+ + LG GLRQ+ D +V V K+G LR PN +WV+
Sbjct: 4 LVDAPVLPGFRVEEAIEMAKSNKKVVLGPGLRQDRDDAVLVCKSGVLRKKTPNTFWVDCY 63
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
QKRYVP + V+GIV D F VDI G A L LAFEG T++N P +G +
Sbjct: 64 QKRYVPNRSEIVVGIVTQKAGDIFRVDIGGSEPASLSYLAFEGATKKNRPDVNVGDAICA 123
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
R++ AN + PEL C D+ GK + G+L+DG++F S L R +L +P C L+ L K++
Sbjct: 124 RLLIANRDLEPELICVDSHGKKGKLGVLQDGFVFNCSINLVRKIL-NPKCVFLDLLAKEM 182
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+FE+A G+NGR+W+ ++ + V NAI+ E S + K + D +
Sbjct: 183 AFEMAAGMNGRIWIKGKTVKETIAVGNAILAVEFKSNDELKELCDDI 229
>gi|195454637|ref|XP_002074335.1| GK18349 [Drosophila willistoni]
gi|194170420|gb|EDW85321.1| GK18349 [Drosophila willistoni]
Length = 235
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 14 IVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PG+ V + + ++ + LG GLR+ D+V KAG LR PN +WV++ Q+RYVP
Sbjct: 10 IVMPGERVTSIEDLAKSKRVILGPGLRRLDDTVVASKAGPLRHKDPNTFWVDNYQRRYVP 69
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D VLG+V D + VDI A + LAFE T++N P G L+Y RV+ A+
Sbjct: 70 ARGDLVLGLVKAKAGDLYRVDIGSADTASISFLAFEAATKKNRPDLNPGDLIYARVLNAS 129
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C +++GK + G+L DG+ F+ S L R+LL CP L +QL +EIAV
Sbjct: 130 ADIEPELVCVNSNGKRGKLGVLSDGFFFKCSLNLGRVLLRE-NCPALTAFTRQLPYEIAV 188
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
G+NGR+W+ A S + +SN+I++ E + Q
Sbjct: 189 GVNGRIWLKARSMRETMALSNSILSLEQTNYSQ 221
>gi|325192649|emb|CCA27072.1| exosome complex exonuclease RRP40 putative [Albugo laibachii Nc14]
Length = 277
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 139/235 (59%), Gaps = 13/235 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKA---GKLRFSKPNKYWVESSQKRY 70
IV+PGD + + + +KLG GL+ + + I A G LR+ PN+YW++ KRY
Sbjct: 44 IVLPGDDLTTTITKSGNHVKLGSGLKHIKEPHNRIVASNCGILRYRPPNRYWIDYDHKRY 103
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
+ V+D+V+GIV+D A+ + ++I A L LAF+G T+RN P ++GSL+Y RV+K
Sbjct: 104 IASVDDSVIGIVIDRNAEFYRLNIGSTNTAVLGTLAFDGATKRNRPNLQVGSLVYARVIK 163
Query: 131 ANPGMNPELSCT--------DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL 182
A+ + EL+C D + +G L GY F S G +R LL + +L L
Sbjct: 164 AD--VECELTCEAPANVNKRDWMTGLSIYGELSGGYNFRVSIGFARQLLRAQDDSILHLL 221
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
G+ +S+EIA+G NG VW+ +++ VL++NA++NSE ++ Q + M+ LL+ I
Sbjct: 222 GRTISYEIAIGQNGIVWLQSKANQHTVLLANALLNSECMTQAQVETMIQTLLKAI 276
>gi|57094135|ref|XP_538738.1| PREDICTED: exosome complex component RRP40 [Canis lupus familiaris]
Length = 275
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 136/228 (59%), Gaps = 10/228 (4%)
Query: 17 PGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQK 68
PG+ L L++ T ++ G GLR+ D + V K G+LR +P YWV+S QK
Sbjct: 48 PGERPLRLNAGTRSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGGGSGGGVYWVDSQQK 107
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP D V+GIV D F VD+ G A L LAFEG T+RN P +IG L+Y +
Sbjct: 108 RYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQF 167
Query: 129 VKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V AN M PE+ C D+ G+A+ G++ +DG +F+ + GL R LL +P C +L+E+GK
Sbjct: 168 VVANKDMEPEMVCIDSCGRASGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYP 226
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 227 LEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>gi|326428875|gb|EGD74445.1| hypothetical protein PTSG_05810 [Salpingoeca sp. ATCC 50818]
Length = 264
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 116/194 (59%), Gaps = 2/194 (1%)
Query: 45 VSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV 104
+ V+ G LR K N WV+ KR +P D V+GI+ +N+ VDI G A L
Sbjct: 72 LQVVVPGDLR-RKGNMVWVDGVHKRALPAEGDYVIGIITGTPGENYNVDIGGSCNATLHN 130
Query: 105 LAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETST 164
LAFEG T+RN P+ ++G L+Y RV + M PEL+C ASGKA GLL+ G++FE S
Sbjct: 131 LAFEGATKRNRPRLKVGDLVYARVQLMHKYMEPELTCVHASGKAQGMGLLEGGFLFEISL 190
Query: 165 GLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV 224
GLSR LLS C VL LG +L FEI +G NGRVW A +LV NAI SE LSA
Sbjct: 191 GLSRTLLSR-GCAVLHALGAELPFEITIGRNGRVWAKAARACETMLVVNAIRASERLSAK 249
Query: 225 QQKIMVDKLLQRIK 238
+ +V ++ ++I+
Sbjct: 250 HTRELVKEMARKIR 263
>gi|194854233|ref|XP_001968313.1| GG24804 [Drosophila erecta]
gi|190660180|gb|EDV57372.1| GG24804 [Drosophila erecta]
Length = 232
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 8/214 (3%)
Query: 14 IVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PGD + + + ++ + LG GLR+ D+V KAG LR +P +WV++ Q+RY+P
Sbjct: 7 VVMPGDRITAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D VLGIV D + VDI A + LAFE T++N P G L+Y RV+ A+
Sbjct: 67 ARGDLVLGIVRSKAGDLYRVDIGAADTASISYLAFEAATKKNRPDLNPGDLIYARVLNAS 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ EL C ++ GK + G+L +G+ F+ S L RMLL CPVL L ++L +EIAV
Sbjct: 127 ADIESELVCVNSVGKRGKLGVLAEGFFFKCSLNLGRMLLRE-NCPVLTALTRELPYEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQ 226
G+NGR+W+NA S V ++NAI SA++Q
Sbjct: 186 GVNGRIWLNAHSLKETVALANAI------SALEQ 213
>gi|119114696|ref|XP_319438.3| AGAP010247-PA [Anopheles gambiae str. PEST]
gi|116118540|gb|EAA43646.3| AGAP010247-PA [Anopheles gambiae str. PEST]
Length = 238
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 3/209 (1%)
Query: 15 VVPGDVVLDLSSM--TNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
V+ GD++ + M N+ + LG G+R E ++V K G L+ PN +WV++ Q+RYVP
Sbjct: 10 VLAGDIISEPMEMMKANKKVILGPGIRVEKETVRASKCGMLKMKPPNTFWVDAYQRRYVP 69
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
+ V+G+V+ D F +DI G A L +AFEG T++N P +G ++Y R++ A+
Sbjct: 70 NRGELVIGVVMAKTGDTFRLDIGGSETASLSYMAFEGATKKNRPDVNVGDIVYARLLIAH 129
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
P + PEL C D+ GK + G+L DG+M S L R +L +P L +L K+L FEIA
Sbjct: 130 PDVEPELVCVDSHGKKGKLGVLHDGFMISCSLNLVRKIL-NPKSNFLSQLAKELPFEIAA 188
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESL 221
G+NGR+W+ + + V NAI+ E L
Sbjct: 189 GMNGRIWIRGRTIKETIAVGNAILALEYL 217
>gi|307206972|gb|EFN84811.1| Exosome complex exonuclease RRP40 [Harpegnathos saltator]
Length = 236
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 131/208 (62%), Gaps = 3/208 (1%)
Query: 14 IVVPGDVVLDLS-SMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PGD V D+S S + + LG GLR++ D++ + KAG L+ +P Y+V+ QKRY+P
Sbjct: 8 VVLPGDRVKDVSLSNEKEVVILGPGLRRDNDAIFICKAGILKKREPAVYYVDGYQKRYIP 67
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
+ ++GI+ D + VDI A L LAFEG +++N P +IG +++ +++ A+
Sbjct: 68 SRGENIVGIITQKAGDIYKVDIGASEQASLSYLAFEGASKKNRPDIQIGDVVFAKLLIAS 127
Query: 133 PGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIA 191
M PEL C D+ GK + G+L DG MF S L R +L+ P CP+ + LGK ++EIA
Sbjct: 128 KDMEPELVCVDSQGKENDLGVLGTDGMMFTCSLSLVRKILN-PDCPLFKLLGKNQAYEIA 186
Query: 192 VGLNGRVWVNAESPSTVVLVSNAIMNSE 219
VG+NG++W+ A S + V+NAI+ +E
Sbjct: 187 VGMNGKIWIKARSVQETIAVANAILAAE 214
>gi|355686795|gb|AER98189.1| exosome component 3 [Mustela putorius furo]
Length = 275
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 143/258 (55%), Gaps = 29/258 (11%)
Query: 6 STANLVDKIVVPGD--------------------VVLDLSSMTNQTIKLGGGLRQECDSV 45
+ ++D++V+PG+ + L+ + + + G GLR+ D +
Sbjct: 19 AARTMLDQVVLPGEELLLPEQEDAEGPGGAGERPLRLNAGTRSRGRVVCGPGLRRSGDRL 78
Query: 46 SVIKAGKLRFSKPNK-------YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT 98
V K G+LR +P YWV+S QKRYVP D V+GIV D F VD+ G
Sbjct: 79 LVTKCGRLRHKEPGGGSSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSE 138
Query: 99 IAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDG 157
A L LAFEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A+ G++ +DG
Sbjct: 139 PASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRASGMGVIGQDG 198
Query: 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN 217
+F+ + GL R LL +P C +L+E+GK EI G+NGR+WV A++ ++++N +
Sbjct: 199 LLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEA 257
Query: 218 SESLSAVQQKIMVDKLLQ 235
E ++A Q+K + +L +
Sbjct: 258 CEHMTADQRKQIFSRLAE 275
>gi|170063463|ref|XP_001867115.1| exosome complex exonuclease RRP40 [Culex quinquefasciatus]
gi|167881089|gb|EDS44472.1| exosome complex exonuclease RRP40 [Culex quinquefasciatus]
Length = 238
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 132/226 (58%), Gaps = 4/226 (1%)
Query: 11 VDKIVVPGDVVLDLSSM--TNQTIKLGGGLRQECDS-VSVIKAGKLRFSKPNKYWVESSQ 67
V+ V+PG V + + N+ + LG GLRQ+ D V V K+G LR PN +WV+ Q
Sbjct: 5 VNGTVLPGFQVQEAIELAKNNKKVILGPGLRQDRDDLVLVCKSGVLRKKPPNTFWVDCHQ 64
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
KRYVP + V+GIV D F VDI A L +AFEG T++N P +G ++ R
Sbjct: 65 KRYVPNRGEIVIGIVTQKAGDIFRVDIGASEPASLSYMAFEGATKKNRPDVNVGEVICAR 124
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
++ AN + PEL C D+ GK + G L+DG++F S L R +L +P CP L+ L K+L+
Sbjct: 125 LLIANKDLEPELICVDSHGKKGKLGALQDGFVFNCSINLVRKIL-NPKCPFLDLLAKELA 183
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
FE+A G+NGR+WV ++ + V NAI+ E S + + + D +
Sbjct: 184 FEMAAGMNGRIWVKGKTVKETIAVGNAILAVEFKSNEELRELCDDI 229
>gi|417398222|gb|JAA46144.1| Putative exosome complex component rrp40-like protein [Desmodus
rotundus]
Length = 275
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 135/227 (59%), Gaps = 10/227 (4%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKR 69
G+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV+S QKR
Sbjct: 49 GERPLRLNAGVRSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGGVYWVDSQQKR 108
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V
Sbjct: 109 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFV 168
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +L+ELGK
Sbjct: 169 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APNCEILQELGKLYPL 227
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 228 EIVFGMNGRIWVKAKTVQQTLILANVLEACEHMTADQRKQIFSRLAE 274
>gi|452821561|gb|EME28590.1| exosome complex component RRP4 [Galdieria sulphuraria]
Length = 244
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 133/232 (57%), Gaps = 10/232 (4%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYV 71
D V PGD + L + N I++G G+ + D + +K G L NK W+E++QKRY+
Sbjct: 7 DVFVFPGDKLFKLENGDN--IRIGQGVVKRGDGLVALKPGYLH-KDGNKIWIETAQKRYI 63
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
P V D V+GI+VD +D + VD+ G + A LP+LAFEG T+RN P GS +Y RVV A
Sbjct: 64 PTVGDLVIGIIVDRSSDFYQVDVGGFSTALLPILAFEGATKRNRPHLSAGSAVYARVVSA 123
Query: 132 NPGMNPELSC----TDASGKAAE--FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQ 185
+ P+LSC T S E FG L G + S L R +L V ELGK
Sbjct: 124 DRDSEPQLSCLLPGTQHSWVTGETIFGELSQGNLIHCSISLCRNILLGRN-SVFTELGKY 182
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ FE A G+NGR+WV ++S +VL+SN I+ SE+++ Q M+ L+ +I
Sbjct: 183 IPFEQATGMNGRIWVRSQSAGHIVLLSNLIICSENMTNDQLSAMIKSLVSKI 234
>gi|195470541|ref|XP_002087565.1| GE17692 [Drosophila yakuba]
gi|194173666|gb|EDW87277.1| GE17692 [Drosophila yakuba]
Length = 232
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 8/214 (3%)
Query: 14 IVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PG+ + + + ++ + LG GLR+ D+V KAG LR +P +WV++ Q+RY+P
Sbjct: 7 IVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D VLGIV D + VDI A + LAFE T++N P G L+Y RV+ A+
Sbjct: 67 ARGDLVLGIVRAKAGDLYRVDIGAADTASISYLAFEAATKKNRPDLNPGDLIYARVLNAS 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C ++ GK + G+L +G+ F+ S L RMLL CPVL L ++L +EIAV
Sbjct: 127 ADIEPELVCVNSVGKRGKLGVLAEGFFFKCSLNLGRMLLRE-NCPVLGALTRELPYEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQ 226
G+NGR+W+ A S V ++NAI SA++Q
Sbjct: 186 GVNGRIWLKAHSLKETVALANAI------SALEQ 213
>gi|24580923|ref|NP_722725.1| Rrp40 [Drosophila melanogaster]
gi|22945471|gb|AAN10459.1| Rrp40 [Drosophila melanogaster]
gi|72083300|gb|AAZ66314.1| RE44908p [Drosophila melanogaster]
gi|220952144|gb|ACL88615.1| CG31938-PA [synthetic construct]
Length = 232
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 124/203 (61%), Gaps = 2/203 (0%)
Query: 14 IVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
IV+PG+ + + + ++ + LG GLR+ D+V KAG LR +P +WV++ Q+RY+P
Sbjct: 7 IVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIP 66
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D +LGIV D + VDI A + LAFE +++N P G L+Y RV+ A+
Sbjct: 67 ARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDLIYARVLNAS 126
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
+ PEL C ++ GK+ + G+L DG+ F+ S L RMLL CPVL L ++L +EIAV
Sbjct: 127 ADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRE-NCPVLAALTRELPYEIAV 185
Query: 193 GLNGRVWVNAESPSTVVLVSNAI 215
G+NGR+W+ A S V ++NAI
Sbjct: 186 GVNGRIWLKAHSLKETVALANAI 208
>gi|195350393|ref|XP_002041725.1| GM16829 [Drosophila sechellia]
gi|194123498|gb|EDW45541.1| GM16829 [Drosophila sechellia]
Length = 232
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Query: 12 DKIVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
+ IV+PG+ + + + ++ + LG GLR+ D+V KAG LR +P +WV++ Q+RY
Sbjct: 5 NTIVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRY 64
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
+P D +LGIV D + VDI A + LAFE T++N P G L+Y RV+
Sbjct: 65 IPARGDLILGIVRAKSGDMYRVDIGAADTASISYLAFEAATKKNRPDLIPGDLIYARVLN 124
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
A+ + PEL C ++ GK + G+L +G+ F+ S L RMLL CPVL L +++ +EI
Sbjct: 125 ASADIEPELVCVNSVGKRGKLGVLTEGFFFKCSLNLGRMLLRE-NCPVLAALTREMPYEI 183
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAI 215
AVG+NGR+WV A S V ++NAI
Sbjct: 184 AVGVNGRIWVKAHSLKETVALANAI 208
>gi|383865315|ref|XP_003708120.1| PREDICTED: exosome complex component RRP40-like [Megachile
rotundata]
Length = 241
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 129/211 (61%), Gaps = 3/211 (1%)
Query: 11 VDKIVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V +V+PGD V D++++ +TI LG GLR+E D+V KAG L+ ++P Y+V++ QKR
Sbjct: 5 VGDVVMPGDTVKDITTVNKKETIILGPGLRREADTVFAYKAGILKKAEPAVYYVDTYQKR 64
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P + V+GIV D F VDI A L LAFEG T++N P ++G L+Y +++
Sbjct: 65 YIPNRGENVVGIVTQKGGDIFKVDIGASDQASLSYLAFEGATKKNRPDIQVGDLVYAKLL 124
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M EL C D+ GK G+L DG +F S L R +L+ + P+ + L +F
Sbjct: 125 VASKDMESELVCVDSHGKEKNLGVLSNDGMLFTCSLSLIRKILNQKS-PLFKTLANSQAF 183
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
E+A G+NGRVWV A + + V+NAI+ +E
Sbjct: 184 EVAAGMNGRVWVKARTIHETIAVANAILAAE 214
>gi|195575819|ref|XP_002077774.1| GD23107 [Drosophila simulans]
gi|194189783|gb|EDX03359.1| GD23107 [Drosophila simulans]
Length = 232
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Query: 12 DKIVVPGDVVLDLSSMT-NQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
+ IV+PG+ + + + ++ + LG GLR+ D+V KAG LR +P +WV++ Q+RY
Sbjct: 5 NTIVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRY 64
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
+P D +LGIV D + VDI A + LAFE T++N P G L+Y RV+
Sbjct: 65 IPARGDLILGIVRAKSGDIYRVDIGAADTASISYLAFEAATKKNRPDLIPGDLIYARVLN 124
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
A+ + PEL C ++ GK + G+L +G+ F+ S L RMLL CPVL L +++ +EI
Sbjct: 125 ASADIEPELVCVNSVGKRGKLGVLTEGFFFKCSLNLGRMLLRE-NCPVLAALTREMPYEI 183
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAI 215
AVG+NGR+WV A S V ++NAI
Sbjct: 184 AVGVNGRIWVKAHSLKETVALANAI 208
>gi|301758296|ref|XP_002914984.1| PREDICTED: exosome complex exonuclease RRP40-like [Ailuropoda
melanoleuca]
gi|281341275|gb|EFB16859.1| hypothetical protein PANDA_002935 [Ailuropoda melanoleuca]
Length = 275
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAGTRSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGGSSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A+ G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRASGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>gi|149045812|gb|EDL98812.1| exosome component 3 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 281
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 138/237 (58%), Gaps = 14/237 (5%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK--------- 60
D + PG+ L L++ +++ G GLR+ D + V K G+LR +P+
Sbjct: 45 DGLGGPGEQPLRLNAGARPRLRIVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGGGGGG 104
Query: 61 -YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
YWV+S QKRYVP D V+GIVV D F VD+ G A L LAFEG T+RN P +
Sbjct: 105 VYWVDSQQKRYVPVKGDHVIGIVVAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQ 164
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPV 178
+G L+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +
Sbjct: 165 VGDLIYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEI 223
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
++ELGK EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 224 VQELGKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAE 280
>gi|426220170|ref|XP_004004290.1| PREDICTED: exosome complex component RRP40 [Ovis aries]
Length = 275
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ ++ + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>gi|440897129|gb|ELR48894.1| Exosome complex exonuclease RRP40 [Bos grunniens mutus]
Length = 275
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ ++ + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNATARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>gi|78369404|ref|NP_001030474.1| exosome complex component RRP40 [Bos taurus]
gi|122140367|sp|Q3T0E1.1|EXOS3_BOVIN RecName: Full=Exosome complex component RRP40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40
gi|74267713|gb|AAI02437.1| Exosome component 3 [Bos taurus]
gi|296484653|tpg|DAA26768.1| TPA: exosome complex exonuclease RRP40 [Bos taurus]
Length = 275
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ ++ + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>gi|410978639|ref|XP_003995697.1| PREDICTED: exosome complex component RRP40 [Felis catus]
Length = 276
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 126/209 (60%), Gaps = 9/209 (4%)
Query: 35 GGGLRQECDSVSVIKAGKLRFSKPNK-------YWVESSQKRYVPCVEDTVLGIVVDCKA 87
G GLR+ D + V K G+LR+ +P YWV+S QKRYVP D V+GIV
Sbjct: 68 GPGLRRCGDRLLVTKCGRLRYKEPGGGGGGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSG 127
Query: 88 DNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGK 147
D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M PE+ C D+ G+
Sbjct: 128 DIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGR 187
Query: 148 AAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPS 206
A G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+NGR+WV A++
Sbjct: 188 ANGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQ 246
Query: 207 TVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
++++N + E ++A Q+K + +L +
Sbjct: 247 QTLILANILEACEHMTADQRKQIFSRLAE 275
>gi|350411956|ref|XP_003489500.1| PREDICTED: exosome complex component RRP40-like [Bombus impatiens]
Length = 269
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 132/211 (62%), Gaps = 3/211 (1%)
Query: 11 VDKIVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V +V+PGD + D++++T +TI LG GLR+E D+V KAG L+ ++P Y+V+S QKR
Sbjct: 33 VGDVVMPGDTIKDITTITKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKR 92
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP + V+GIV +D F VDI A L LAFEG T++N P ++G L++ +++
Sbjct: 93 YVPNRGENVVGIVTQRSSDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLL 152
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M PEL C D+ GK + G L +G +F S L R +L+ + + + L + +F
Sbjct: 153 VASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSL-LFKTLSRSQAF 211
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
E+AVG+NGRVWV A + + V+ AI+ +E
Sbjct: 212 EVAVGMNGRVWVKARTIQETIAVATAILAAE 242
>gi|147898568|ref|NP_001089320.1| exosome component 3 [Xenopus laevis]
gi|61401975|gb|AAH92022.1| MGC84934 protein [Xenopus laevis]
Length = 250
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 140/236 (59%), Gaps = 15/236 (6%)
Query: 6 STANLVDKIVVPGDVV----------LDLS--SMTNQT-IKLGGGLRQECDSVSVIKAGK 52
S ++V +IV+PGDV+ L LS S TN++ + G GL ++ D + V K G
Sbjct: 5 SIEDVVGQIVLPGDVLVLPAQPRDAPLSLSGPSSTNRSRVVCGPGLMRQEDDLLVNKCGL 64
Query: 53 LRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR 112
LR P YWV+S QKRYVP D V+GIV D F V++ G A L LAFEG T+
Sbjct: 65 LRHRDPAVYWVDSQQKRYVPVKGDHVIGIVTTRAGDIFKVEVGGSEQASLSYLAFEGATK 124
Query: 113 RNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLL 171
+N P + G L+Y + + AN M PE++C D+SGKA G++ +DG MF+ S GL R LL
Sbjct: 125 KNRPNVKAGDLVYGQFIVANKDMEPEMACIDSSGKANGKGVIGQDGLMFKVSLGLVRKLL 184
Query: 172 SSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 227
+P +++EL E+ VG+NGR+WV A++ ++V+N + E L+A Q+K
Sbjct: 185 -TPQNDIIQELMSIFPLEVVVGMNGRIWVKAKTTQQTLIVANLLEACEYLTAEQRK 239
>gi|39930417|ref|NP_079789.1| exosome complex component RRP40 [Mus musculus]
gi|46577373|sp|Q7TQK4.3|EXOS3_MOUSE RecName: Full=Exosome complex component RRP40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40
gi|32484211|gb|AAH54085.1| Exosome component 3 [Mus musculus]
gi|54311132|gb|AAH23669.1| Exosome component 3 [Mus musculus]
gi|148670453|gb|EDL02400.1| exosome component 3, isoform CRA_a [Mus musculus]
Length = 274
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 138/233 (59%), Gaps = 9/233 (3%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-----YWV 63
VD + G+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV
Sbjct: 42 VDGLGGAGEQPLRLNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWV 101
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+S QKRYVP D V+GIV+ D F VD+ G A L LAFEG T+RN P ++G L
Sbjct: 102 DSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 161
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++EL
Sbjct: 162 IYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQEL 220
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
GK EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 221 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAE 273
>gi|395823863|ref|XP_003785196.1| PREDICTED: exosome complex component RRP40 [Otolemur garnettii]
Length = 277
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 133/225 (59%), Gaps = 12/225 (5%)
Query: 22 LDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK--------YWVESSQKRYV 71
L L++ T +++ G GLR+ D + V K G+LR +P+ YWV+S QKRYV
Sbjct: 53 LRLNAGTRSRVRVVCGPGLRRSGDRLLVTKCGRLRHKEPSSGSGGGGGVYWVDSQQKRYV 112
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
P D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V A
Sbjct: 113 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVA 172
Query: 132 NPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
N M PE+ C D+ G+A G++ DG +F+ + GL R LL +P C +++E+GK EI
Sbjct: 173 NKDMEPEMVCIDSCGRANGMGVIGHDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEI 231
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
G+NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 232 VFGMNGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 276
>gi|338720163|ref|XP_001915160.2| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP40-like [Equus caballus]
Length = 275
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 124/206 (60%), Gaps = 8/206 (3%)
Query: 37 GLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKADNF 90
GLR+ D + V K G+LR +P YWV+S QKRYVP D V+GIV D F
Sbjct: 70 GLRRCGDRLLVTKCGRLRHKEPGGGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIF 129
Query: 91 FVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAE 150
VD+ G A L LAFEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A
Sbjct: 130 KVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANG 189
Query: 151 FGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVV 209
G++ +DG +F+ + GL R LL +P C +L+ELGK EI G+NGR+WV A++ +
Sbjct: 190 MGVIGQDGLLFKVTLGLIRKLL-APDCEILQELGKLYPLEIVFGMNGRIWVKAKTIQQTL 248
Query: 210 LVSNAIMNSESLSAVQQKIMVDKLLQ 235
+++N + E ++A Q+K + +L +
Sbjct: 249 ILANILEACEHMTADQRKQIFSRLAE 274
>gi|12839296|dbj|BAB24501.1| unnamed protein product [Mus musculus]
Length = 243
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 138/233 (59%), Gaps = 9/233 (3%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-----YWV 63
VD + G+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV
Sbjct: 11 VDGLGGAGEQPLRLNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWV 70
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+S QKRYVP D V+GIV+ D F VD+ G A L LAFEG T+RN P ++G L
Sbjct: 71 DSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 130
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++EL
Sbjct: 131 IYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQEL 189
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
GK EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 190 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAE 242
>gi|431909887|gb|ELK12989.1| Exosome complex exonuclease RRP40 [Pteropus alecto]
Length = 274
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 130/220 (59%), Gaps = 7/220 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVED 76
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP D
Sbjct: 55 LNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGGSGGGVYWVDSQQKRYVPVKGD 114
Query: 77 TVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMN 136
V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M
Sbjct: 115 HVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDME 174
Query: 137 PELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN 195
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+N
Sbjct: 175 PEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMN 233
Query: 196 GRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
GR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 234 GRIWVKAKTVQQTLILANILEACEHMTADQRKQIFSRLAE 273
>gi|91089513|ref|XP_970464.1| PREDICTED: similar to AGAP010247-PA [Tribolium castaneum]
gi|270011388|gb|EFA07836.1| hypothetical protein TcasGA2_TC005405 [Tribolium castaneum]
Length = 221
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 123/207 (59%), Gaps = 3/207 (1%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+V PGDVV D+ S+ T+ LG G+ + +V V +AG+L PN YWVE QKRYVP
Sbjct: 2 LVFPGDVVKDVKSVKGVTV-LGPGVAPDGSTVRVTRAGRLHAKPPNTYWVEHDQKRYVPK 60
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+GIVV D +DI G A L +LAFEG T++ P ++G L+Y R++ A+
Sbjct: 61 RGDLVVGIVVKKSGDLLKIDIGGSEPASLSMLAFEGATKKQKPDLQVGDLVYGRLLNAHK 120
Query: 134 GMNPELSCTDASGKAAEFG-LLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
M PEL C D+ KA + G L +G++ S GL LL + P+LE +GK FEIAV
Sbjct: 121 EMEPELVCVDSYFKAGKLGPLSNEGFLVTVSLGLVWRLLEAEN-PILEAVGKAAPFEIAV 179
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSE 219
G+NGRVWVN S V+ V + +E
Sbjct: 180 GMNGRVWVNGRSVKDVLNVVRCLEVAE 206
>gi|322797836|gb|EFZ19744.1| hypothetical protein SINV_05937 [Solenopsis invicta]
Length = 240
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 129/216 (59%), Gaps = 8/216 (3%)
Query: 11 VDKIVVPGD---VVLDLSSM---TNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVE 64
V +V+PGD +V+ + + + LG GLR+E D+V V KAG LR +P Y+V+
Sbjct: 5 VGDVVMPGDKLSIVVPVKKERGNEKEVVILGPGLRREGDTVLVCKAGVLRKREPAVYYVD 64
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
QKRY+P + V+GIV D + VDI A L LAFEG T++N P ++G L+
Sbjct: 65 CYQKRYIPNRGENVIGIVTQKSGDIYKVDIGASDQATLSYLAFEGATKKNRPDVQVGDLV 124
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLK-DGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y +++ A+ M PEL C D+ GK + G+L DG MF S L R LL+ P CP+ + LG
Sbjct: 125 YAKLLVASKDMEPELVCVDSHGKENDLGVLSSDGMMFTCSLSLVRKLLN-PECPLFKLLG 183
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
+ +E+A G+NGR+W+ A S + V+NAI+ +E
Sbjct: 184 QNQMYELAAGMNGRIWIKARSVQETIAVANAILAAE 219
>gi|126334106|ref|XP_001371994.1| PREDICTED: exosome complex component RRP40-like [Monodelphis
domestica]
Length = 322
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 140/253 (55%), Gaps = 29/253 (11%)
Query: 9 NLVDKIVVPGDVVL-------DLSSMTNQTIKLGG------------GLRQECDSVSVIK 49
++ ++V+PG+ +L QT++LG GLR+ D + V K
Sbjct: 68 TMLGQVVLPGEELLLPDSAGPGTEGSAEQTLRLGAVVRPRTRVVCGPGLRRCGDRLLVTK 127
Query: 50 AGKLRFSKPNK--------YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF 101
G+LR +P+ YWV+S QKRYVP D V+GIV D F VD+ G A
Sbjct: 128 CGRLRHKEPSGGGSGGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDLFKVDVGGSEPAS 187
Query: 102 LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMF 160
L LAFEG T+RN P ++G L+Y + V AN M PE+ C D++G+A G++ +DG +F
Sbjct: 188 LSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSNGRANGMGVIGQDGLLF 247
Query: 161 ETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
+ + GL R LL +P C +++E+GK EI G+NGR+WV A + ++++N + E
Sbjct: 248 KVTLGLIRKLL-APDCEIIQEIGKLYPLEIVFGMNGRIWVKARTIQQTLILANVLEACEH 306
Query: 221 LSAVQQKIMVDKL 233
++ Q+K + +L
Sbjct: 307 MTTEQRKQIFSRL 319
>gi|291382949|ref|XP_002708010.1| PREDICTED: exosome component 3 [Oryctolagus cuniculus]
Length = 275
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 125/208 (60%), Gaps = 8/208 (3%)
Query: 35 GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKAD 88
G GLR+ D + V K G LR +P+ YWV+S QKRYVP D V+GIV D
Sbjct: 68 GPGLRRSGDRLLVTKCGLLRHKEPSSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGD 127
Query: 89 NFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKA 148
F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A
Sbjct: 128 IFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRA 187
Query: 149 AEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPST 207
G++ +DG +F+ + GL R LL +P C +++E+GK EI G+NGR+WV A++
Sbjct: 188 NGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQ 246
Query: 208 VVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
++++N + E ++A Q+K + +L +
Sbjct: 247 TLILANILEACEHMTADQRKQIFSRLAE 274
>gi|340711298|ref|XP_003394215.1| PREDICTED: exosome complex component RRP40-like isoform 1 [Bombus
terrestris]
Length = 257
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 131/211 (62%), Gaps = 3/211 (1%)
Query: 11 VDKIVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V +V+PGD++ D++++ +TI LG GLR+E D+V KAG L+ ++P Y+V+S QKR
Sbjct: 21 VGDVVMPGDIIKDITTINKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKR 80
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P + V+GIV +D F VDI A L LAFEG T++N P ++G L++ +++
Sbjct: 81 YIPNRGENVVGIVTQRSSDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLL 140
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M PEL C D+ GK + G L +G +F S L R +L+ + + L + ++
Sbjct: 141 VASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSL-LFNTLARSQAY 199
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
E+AVG+NGRVWV A + + V+ AI+ +E
Sbjct: 200 EVAVGMNGRVWVKARTIQETIAVATAILAAE 230
>gi|340711300|ref|XP_003394216.1| PREDICTED: exosome complex component RRP40-like isoform 2 [Bombus
terrestris]
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 131/211 (62%), Gaps = 3/211 (1%)
Query: 11 VDKIVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V +V+PGD++ D++++ +TI LG GLR+E D+V KAG L+ ++P Y+V+S QKR
Sbjct: 8 VGDVVMPGDIIKDITTINKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P + V+GIV +D F VDI A L LAFEG T++N P ++G L++ +++
Sbjct: 68 YIPNRGENVVGIVTQRSSDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLL 127
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M PEL C D+ GK + G L +G +F S L R +L+ + + L + ++
Sbjct: 128 VASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSL-LFNTLARSQAY 186
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
E+AVG+NGRVWV A + + V+ AI+ +E
Sbjct: 187 EVAVGMNGRVWVKARTIQETIAVATAILAAE 217
>gi|194034051|ref|XP_001929041.1| PREDICTED: exosome complex component RRP40 [Sus scrofa]
Length = 275
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 124/208 (59%), Gaps = 8/208 (3%)
Query: 35 GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKAD 88
G GLR+ D + V K G+LR + YWV+S QKRYVP D V+GIV D
Sbjct: 68 GPGLRRCGDRLLVTKCGRLRHKEAGGGGGSGVYWVDSQQKRYVPVKGDHVIGIVTAKSGD 127
Query: 89 NFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKA 148
F VD+ G A L LAFEG T+RN P +IG L+Y + V AN M PE+ C D+ G+A
Sbjct: 128 IFKVDVGGSEPASLSYLAFEGATKRNRPNVQIGDLIYGQFVVANKDMEPEMVCIDSCGRA 187
Query: 149 AEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPST 207
G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+NGR+WV A++
Sbjct: 188 NGMGVIGQDGLLFKVTLGLVRKLL-APNCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQQ 246
Query: 208 VVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
++++N + E ++A Q+K + +L +
Sbjct: 247 TLILANVLEACEHMTADQRKQIFSRLAE 274
>gi|47212018|emb|CAF95424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 241
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 136/237 (57%), Gaps = 16/237 (6%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL-----------GGGLRQECDSVSVIKAGKLRFSKPN 59
V +++VPGD + + +TI L G GLR+ D + V K+G LR +PN
Sbjct: 9 VGQVLVPGD---EFCCGSEETISLSAQVQPEKLVCGPGLRRSVDRLQVCKSGVLRHKEPN 65
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
+W++S KRYVP D V+G+V D F VD+ G A L LAFEG T+RN P +
Sbjct: 66 MFWIDSQHKRYVPTRGDAVIGVVTAKTGDIFKVDVGGSEQASLSYLAFEGATKRNRPNVQ 125
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPV 178
+G L++ +++ AN M PEL C D SG+A G+ + G +F S GL R LL +P +
Sbjct: 126 VGDLVFAQLLVANRDMEPELVCVDGSGRANGMGVFGEGGLLFSVSLGLVRRLL-APHSEI 184
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
+L + + E+ VGLNGRVWV + S ++V+N + + ++++A Q++ + ++ Q
Sbjct: 185 RSDLQQLVPCELLVGLNGRVWVRSSSTQRTLVVANLLQSCDTMTAPQRRQLFRRVSQ 241
>gi|344272149|ref|XP_003407898.1| PREDICTED: exosome complex component RRP40-like [Loxodonta
africana]
Length = 276
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 133/228 (58%), Gaps = 11/228 (4%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-------YWVESSQK 68
G+ +L L+ +++ G GLR+ D + V K G+LR +P YWV+S QK
Sbjct: 49 GERLLRLNPGARSRVRVVCGPGLRRSGDRLLVTKCGRLRHKEPGGGGGGGGVYWVDSQQK 108
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y +
Sbjct: 109 RYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQF 168
Query: 129 VKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
+ AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK
Sbjct: 169 LVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYP 227
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 228 LEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTTDQRKQIFSRLAE 275
>gi|402896923|ref|XP_003911528.1| PREDICTED: exosome complex component RRP40 [Papio anubis]
Length = 275
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 134/227 (59%), Gaps = 10/227 (4%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKR 69
G+ L L++ +++ G GLR+ D + V K G+LR +P YWV+S QKR
Sbjct: 49 GERPLSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKR 108
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V
Sbjct: 109 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFV 168
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK
Sbjct: 169 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEMGKLYPL 227
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 228 EIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|301613770|ref|XP_002936379.1| PREDICTED: exosome complex exonuclease RRP40-like [Xenopus
(Silurana) tropicalis]
Length = 286
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 139/242 (57%), Gaps = 15/242 (6%)
Query: 6 STANLVDKIVVPGDVV----------LDLS--SMTNQ-TIKLGGGLRQECDSVSVIKAGK 52
S + V +IV+PGDV+ L LS S +N+ + G GL ++ D + V K G
Sbjct: 41 SIEDAVGQIVLPGDVLVLSTQSRDAPLSLSGPSTSNRPRVVCGPGLMRQEDDLLVNKCGL 100
Query: 53 LRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR 112
LR P YWV+S QKRYVP D V+GIV D F VD+ G A L LAFEG T+
Sbjct: 101 LRHRDPAIYWVDSQQKRYVPVKGDHVIGIVTTKSGDIFKVDVGGSEQASLSYLAFEGATK 160
Query: 113 RNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLL 171
+N P ++G L+Y + + AN M PE++C D+SGKA G++ +DG M + S GL R LL
Sbjct: 161 KNRPNVKVGDLVYGQFIVANKDMEPEMACIDSSGKANGKGVIGQDGLMLKVSLGLVRKLL 220
Query: 172 SSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVD 231
P +++EL E+ +G+NGR+WV A++ ++V+N + E L+A Q+K +
Sbjct: 221 -IPQNDIVQELMNIFPMEVVIGMNGRIWVKAKTVQQTLIVANLLEACEYLTAEQRKHVFS 279
Query: 232 KL 233
K
Sbjct: 280 KF 281
>gi|355753186|gb|EHH57232.1| Exosome complex exonuclease RRP40 [Macaca fascicularis]
Length = 275
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 134/227 (59%), Gaps = 10/227 (4%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKR 69
G+ L L++ +++ G GLR+ D + V K G+LR +P YWV+S QKR
Sbjct: 49 GERPLSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKR 108
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V
Sbjct: 109 YVPVKGDHVIGIVTAKSGDIFRVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFV 168
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK
Sbjct: 169 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPL 227
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 228 EIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|313747523|ref|NP_001186445.1| exosome complex exonuclease RRP40 [Gallus gallus]
Length = 261
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 139/247 (56%), Gaps = 25/247 (10%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL--------------GGGLRQECDSVSVIKAGKLRFS 56
V ++V+PGDV+L + T +L G GLR+ + V K G LR
Sbjct: 13 VGQVVLPGDVLLLPAYDEQDTERLPLGTSAAPRGRLLCGPGLRRCAGGLLVTKCGLLRHR 72
Query: 57 KPNK---------YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ YWV+S QKRYVP D V+GIV D F +D+ G A L LAF
Sbjct: 73 RAGDGAAAAAGGAYWVDSQQKRYVPVKGDHVIGIVTGKVGDVFRLDVGGSEQASLSYLAF 132
Query: 108 EGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGL 166
EG T+RN P ++G L+Y + + AN M PE+ C D+SG+A+ G++ +DG++F+ S GL
Sbjct: 133 EGATKRNRPNVQVGDLIYGQFLVANKDMEPEMVCIDSSGRASGMGVIGQDGFLFKVSLGL 192
Query: 167 SRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQ 226
R LL +P C +++EL + FE+ +G+NGR+WV A++ +++ N + E ++A Q+
Sbjct: 193 IRKLL-APKCEIIQELSQLYPFELVLGMNGRIWVKAKTVQQTLIIVNILEACEYMTAEQR 251
Query: 227 KIMVDKL 233
K + KL
Sbjct: 252 KQALAKL 258
>gi|114624600|ref|XP_520587.2| PREDICTED: exosome complex component RRP40 isoform 3 [Pan
troglodytes]
gi|332831948|ref|XP_003312140.1| PREDICTED: exosome complex component RRP40 [Pan troglodytes]
Length = 275
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSEGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|397466870|ref|XP_003805164.1| PREDICTED: exosome complex component RRP40 isoform 1 [Pan paniscus]
gi|343959608|dbj|BAK63661.1| exosome complex exonuclease RRP40 [Pan troglodytes]
gi|410221736|gb|JAA08087.1| exosome component 3 [Pan troglodytes]
gi|410262838|gb|JAA19385.1| exosome component 3 [Pan troglodytes]
gi|410289056|gb|JAA23128.1| exosome component 3 [Pan troglodytes]
Length = 275
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|297684004|ref|XP_002819647.1| PREDICTED: exosome complex component RRP40 [Pongo abelii]
Length = 275
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|426361817|ref|XP_004048094.1| PREDICTED: exosome complex component RRP40 isoform 1 [Gorilla
gorilla gorilla]
Length = 275
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAGACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|383872778|ref|NP_001244869.1| exosome component 3 [Macaca mulatta]
gi|380788587|gb|AFE66169.1| exosome complex component RRP40 isoform 1 [Macaca mulatta]
Length = 275
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 134/227 (59%), Gaps = 10/227 (4%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKR 69
G+ L L++ +++ G GLR+ D + V K G+LR +P YWV+S QKR
Sbjct: 49 GERPLSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKR 108
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V
Sbjct: 109 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFV 168
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK
Sbjct: 169 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPL 227
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 228 EIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|50511943|ref|NP_057126.2| exosome complex component RRP40 isoform 1 [Homo sapiens]
gi|14285758|sp|Q9NQT5.3|EXOS3_HUMAN RecName: Full=Exosome complex component RRP40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40; AltName: Full=p10
gi|8927588|gb|AAF82133.1|AF281132_1 exosome component Rrp40 [Homo sapiens]
gi|12803247|gb|AAH02437.1| Exosome component 3 [Homo sapiens]
gi|14250820|gb|AAH08880.1| Exosome component 3 [Homo sapiens]
gi|119578668|gb|EAW58264.1| exosome component 3 [Homo sapiens]
gi|123982070|gb|ABM82864.1| exosome component 3 [synthetic construct]
gi|123996899|gb|ABM86051.1| exosome component 3 [synthetic construct]
gi|158255164|dbj|BAF83553.1| unnamed protein product [Homo sapiens]
gi|261860530|dbj|BAI46787.1| exosome component 3 [synthetic construct]
Length = 275
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|122920913|pdb|2NN6|G Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 289
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 69 LNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 128
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M
Sbjct: 129 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDM 188
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+
Sbjct: 189 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGM 247
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 248 NGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 288
>gi|332228355|ref|XP_003263357.1| PREDICTED: exosome complex component RRP40 isoform 1 [Nomascus
leucogenys]
gi|332228357|ref|XP_003263358.1| PREDICTED: exosome complex component RRP40 isoform 2 [Nomascus
leucogenys]
Length = 275
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 134/227 (59%), Gaps = 10/227 (4%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKR 69
G+ L L++ +++ G GLR+ D + V K G+LR +P YWV+S QKR
Sbjct: 49 GERPLSLNAGARPRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKR 108
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V
Sbjct: 109 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFV 168
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK
Sbjct: 169 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPL 227
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 228 EIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>gi|403298618|ref|XP_003940110.1| PREDICTED: exosome complex component RRP40 [Saimiri boliviensis
boliviensis]
Length = 276
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 11/228 (4%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-------YWVESSQK 68
G+ L L++ +++ G GLR+ D + V K G+LR +P YWV+S QK
Sbjct: 49 GERPLSLNAGARSRVRVICGPGLRRCGDRLLVTKCGRLRHKEPGGGGGGGGVYWVDSQQK 108
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y +
Sbjct: 109 RYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQF 168
Query: 129 VKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK
Sbjct: 169 VVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYP 227
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
EI G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 228 LEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 275
>gi|307191134|gb|EFN74832.1| Exosome complex exonuclease RRP40 [Camponotus floridanus]
Length = 241
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 8/201 (3%)
Query: 11 VDKIVVPGDVVLDLSSMTNQ------TIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVE 64
V +V+PGD + D+ S + + LG GLR+E D V V KAG L+ P Y+V+
Sbjct: 5 VGDVVMPGDSLKDIKSTKKEGKNERENVILGPGLRREGDKVYVCKAGILKRRDPAVYYVD 64
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
S QKRY+P + V+GIV D + VD+ A L LAFEG T++N P ++G ++
Sbjct: 65 SYQKRYIPSRGENVVGIVTQKSGDIYKVDVGASEQATLSYLAFEGATKKNRPDLQVGDVI 124
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLK-DGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y +++ A+ M PEL C D+ GK E G+L DG +F S L R LL+ P CP+ LG
Sbjct: 125 YAKMLVASKDMEPELVCVDSQGKENELGVLSSDGMVFTCSLSLVRKLLN-PECPLFRILG 183
Query: 184 KQLSFEIAVGLNGRVWVNAES 204
+ ++E+A G+NGR+W+ A S
Sbjct: 184 RNQAYELAAGMNGRIWIKARS 204
>gi|4929673|gb|AAD34097.1|AF151860_1 CGI-102 protein [Homo sapiens]
Length = 220
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 8/208 (3%)
Query: 35 GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKAD 88
G GLR+ D + V K G+LR +P YWV+S QKRYVP D V+GIV D
Sbjct: 13 GPGLRRCGDRLLVTKCGRLRHKEPGSGGGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGD 72
Query: 89 NFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKA 148
F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A
Sbjct: 73 IFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRA 132
Query: 149 AEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPST 207
G++ +DG +F+ + GL R LL +P C +++E+GK EI G+NGR+WV A++
Sbjct: 133 NGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQ 191
Query: 208 VVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
++++N + E +++ Q+K + +L +
Sbjct: 192 TLILANILEACEHMTSDQRKQIFSRLAE 219
>gi|348570290|ref|XP_003470930.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP40-like [Cavia porcellus]
Length = 275
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 135/233 (57%), Gaps = 10/233 (4%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWV 63
D + V G+ L L++ +++ G GLR+ D + V K G+LR + YWV
Sbjct: 43 DGVGVAGERPLRLNAGMRSRLRVVCGPGLRRCGDRLLVTKCGRLRHKESGSGSSGGIYWV 102
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+S QKRYVP D V+GIV D F VD+ G A L LAFEG T+RN P ++G L
Sbjct: 103 DSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 162
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+
Sbjct: 163 IYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEV 221
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
GK EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 222 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTTEQRKQIFARLAE 274
>gi|296190341|ref|XP_002743149.1| PREDICTED: exosome complex component RRP40 isoform 1 [Callithrix
jacchus]
Length = 277
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 10/223 (4%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK--------YWVESSQKRYVPC 73
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAGACSRVRVICGPGLRRCGDRLLVTKCGRLRHKEPGGGGGGGGGVYWVDSQQKRYVPV 114
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN
Sbjct: 115 KGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK 174
Query: 134 GMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI
Sbjct: 175 DMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVF 233
Query: 193 GLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 234 GMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 276
>gi|19114154|ref|NP_593242.1| exosome subunit Rrp40 (predicted) [Schizosaccharomyces pombe 972h-]
gi|74581918|sp|O13903.1|RRP40_SCHPO RecName: Full=Exosome complex component rrp40; AltName:
Full=Ribosomal RNA-processing protein 40
gi|2414605|emb|CAB16582.1| exosome subunit Rrp40 (predicted) [Schizosaccharomyces pombe]
Length = 240
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 136/231 (58%), Gaps = 15/231 (6%)
Query: 17 PGDVVLDLSSMTNQTIKLGGGL----RQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
PG+ + D + +I+LG GL + + + V KAG+L + N ++S KRY+P
Sbjct: 15 PGERIPDSIISQDGSIRLGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIP 74
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+G ++ A+ + VDI IA L LAFE TR++ P +GSL+Y RV A+
Sbjct: 75 ATNDQVIGQIISRFAEGYRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVSLAD 134
Query: 133 PGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLS-----RMLLSSPTCPVLEELGKQL 186
M PEL C DA +GKAA +G LK+GYM TGLS +++L P +L+ LG +
Sbjct: 135 RDMEPELECFDATTGKAAGYGELKNGYMI---TGLSLSHCRKLIL--PKNTLLQTLGSYI 189
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FEIAVG+NGRVWVN+E+ ST VL+ AI N E +S +Q L++++
Sbjct: 190 PFEIAVGMNGRVWVNSENLSTTVLICTAIRNCEFMSDEEQIKYCKDLIKKL 240
>gi|442759049|gb|JAA71683.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp40
[Ixodes ricinus]
Length = 227
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 128/219 (58%), Gaps = 6/219 (2%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYV 71
+ +V+PGD V D+S+ + LG GLR++ + + +AG L+ P YWVE QKRYV
Sbjct: 4 NTLVLPGDTV-DISASDKKKYVLGPGLRKDGERIIATRAGILKQRSPGTYWVEGRQKRYV 62
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
P D V+GIV A+N V+I L + AFEG T+RN P ++G L+ +V+ A
Sbjct: 63 PARGDCVIGIVTAKSAENIRVNIGSSEQGSLSMFAFEGATKRNRPDVQVGDLVMAQVLTA 122
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGL---SRMLLSSPTCPVLEELGKQLSF 188
N M PEL C ++ GK G+L+ F + +R+L CP+L LG+++ F
Sbjct: 123 NRDMEPELVCVNSYGKKGILGVLRSPTAFWMRLPIDLVNRVLCKD--CPLLGSLGRRIPF 180
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 227
EI++G NGRVWVNA + + V NAI ++E+L+A + K
Sbjct: 181 EISLGQNGRVWVNANTLKNTLAVCNAIASAENLTAQEIK 219
>gi|444729441|gb|ELW69857.1| Exosome complex component RRP40 [Tupaia chinensis]
Length = 273
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 6/219 (2%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK----YWVESSQKRYVPCVEDT 77
L+ + T + G GLR+ + + V K G+LR + YWV+S QKRYVP D
Sbjct: 55 LNPGTRTRVRVVCGPGLRRCGNRLLVTKCGRLRHKESGSGGGVYWVDSQQKRYVPVKGDH 114
Query: 78 VLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNP 137
V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M P
Sbjct: 115 VIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEP 174
Query: 138 ELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG 196
E+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+NG
Sbjct: 175 EMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMNG 233
Query: 197 RVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
R+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 234 RIWVKAKTIQQTLILANILEACEHMTTDQRKQIFSRLAE 272
>gi|351712427|gb|EHB15346.1| Exosome complex exonuclease RRP40 [Heterocephalus glaber]
Length = 274
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 123/208 (59%), Gaps = 8/208 (3%)
Query: 35 GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKAD 88
G GLR+ D + V K G+ R + YWV+S QKRYVP D V+GIV D
Sbjct: 67 GPGLRRCGDRLLVTKCGRFRHKESGSGSSGGIYWVDSQQKRYVPVKGDHVIGIVTAKSGD 126
Query: 89 NFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKA 148
F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A
Sbjct: 127 IFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRA 186
Query: 149 AEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPST 207
G++ +DG +F+ + GL R LL +P C +++E+GK EI G+NGR+WV A++
Sbjct: 187 NGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQ 245
Query: 208 VVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
++++N + E ++A Q+K + +L +
Sbjct: 246 TLILANILEACEHMTADQRKQIFARLAE 273
>gi|380030285|ref|XP_003698781.1| PREDICTED: exosome complex component RRP40-like [Apis florea]
Length = 241
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 120/196 (61%), Gaps = 3/196 (1%)
Query: 11 VDKIVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+ +V+PGD V D++++ +TI LG GLR+E D+V KAG L+ ++P Y+V+S QKR
Sbjct: 5 IGDVVMPGDTVKDITTINKKETIILGPGLRREADTVFAYKAGILKKTEPAVYYVDSYQKR 64
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP + V+GIV D F VDI A L LAFEG T++N P ++G L++ +++
Sbjct: 65 YVPNRGEHVVGIVTQKGGDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLL 124
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M PEL C D+ GK + G L +G +F S L R +L+ P+ + L +F
Sbjct: 125 VASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLIRKILNR-NSPLFKTLAHNQAF 183
Query: 189 EIAVGLNGRVWVNAES 204
E+A G+NGRVWV A +
Sbjct: 184 EVAAGMNGRVWVKART 199
>gi|71480074|ref|NP_001025132.1| exosome complex exonuclease RRP40 [Danio rerio]
gi|68533623|gb|AAH98620.1| Zgc:112345 [Danio rerio]
Length = 247
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 9/231 (3%)
Query: 11 VDKIVVPGDVVLDLS-------SMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
+ +V+PGD++ S + + G GLR+ + V +AG L+ +PN YWV
Sbjct: 13 IGDVVLPGDLLFSFSPPEAGDANPKADRLICGPGLRRSGAEIRVCRAGVLKHKQPNMYWV 72
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
Q+RYVP ++V+GIV D F VD+ G A L LAFEG T+RN P ++G L
Sbjct: 73 NCQQRRYVPAKGESVIGIVTAKSGDVFKVDVGGSEQASLSYLAFEGATKRNRPNVQVGDL 132
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEEL 182
++ + AN M PEL C D+ G+A G+ DG +F+ S GL R LL +P ++ +L
Sbjct: 133 VFGQFTIANKDMEPELVCIDSCGRANGMGVFGGDGLLFKVSLGLVRRLL-APQSDLVSDL 191
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
K E+ VG+NGRVWV A + +++SN + E++S Q+ + ++
Sbjct: 192 EKMFPCEMVVGMNGRVWVKARTVQHTLILSNLLEACENMSTAQRHTLFRRV 242
>gi|410931602|ref|XP_003979184.1| PREDICTED: exosome complex component RRP40-like [Takifugu rubripes]
Length = 257
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 122/207 (58%), Gaps = 2/207 (0%)
Query: 30 QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADN 89
+ + G GL + D + V K+G LR +PN +W++S QKRYVP D V+GIV D
Sbjct: 49 EKVVCGPGLMRSADRLQVCKSGVLRHKEPNMFWMDSQQKRYVPTKGDAVIGIVTSKSGDI 108
Query: 90 FFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAA 149
F VD+ G A L LAFEG T+RN P ++G L++ + AN M PEL+C D SG+A
Sbjct: 109 FKVDVGGSEQASLSYLAFEGATKRNRPNVQVGDLVFAHFIVANKDMEPELACIDGSGRAN 168
Query: 150 EFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTV 208
G+ + G +F S GL R LL +P + +L + + E+ VG+NGRVW+ + S
Sbjct: 169 GMGIFGEGGLLFTVSLGLVRRLL-APHSEIRSDLQQLVPCELLVGINGRVWLKSSSTQRT 227
Query: 209 VLVSNAIMNSESLSAVQQKIMVDKLLQ 235
++++N + ++++A Q++ + ++ Q
Sbjct: 228 LIIANLLQCCDTMTAPQRRQLFRRVSQ 254
>gi|409042393|gb|EKM51877.1| hypothetical protein PHACADRAFT_199383 [Phanerochaete carnosa
HHB-10118-sp]
Length = 230
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 128/208 (61%), Gaps = 12/208 (5%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECD---SVSVI--KAGKLRFSKPNK-YWVESSQK 68
V+PG+ V + +KLG GL Q D S S+I +AG+L+ + N+ +W+ES+ +
Sbjct: 4 VLPGESV----PAQHVNLKLGPGLLQVSDAQKSSSIISTRAGELKHTANNRQWWIESNSR 59
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RY P +++V+G+V+ DN+ VDI +A L LAFEG T+RN P ++GSLLY RV
Sbjct: 60 RYAPAPQESVIGVVIARSGDNWRVDIGSAHVASLDGLAFEGATKRNRPNLKVGSLLYARV 119
Query: 129 VKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
A+ M PEL C DA + AE FG LK G++ + S +SRMLL P+ +L LG +
Sbjct: 120 SLAHKDMEPELECFDAQTRKAEGFGELKGGFLAKCSLQMSRMLL-DPSHFLLPLLGSKFP 178
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAI 215
++A+G+NGRVW++ + P + V+ I
Sbjct: 179 LDVAIGVNGRVWISTKEPKHTIAVTRCI 206
>gi|48135934|ref|XP_396758.1| PREDICTED: exosome complex exonuclease RRP40 [Apis mellifera]
Length = 241
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 119/196 (60%), Gaps = 3/196 (1%)
Query: 11 VDKIVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+ +V+PGD + D++ + +TI LG GLR+E D+V KAG L+ ++P Y+V+S QKR
Sbjct: 5 IGDVVMPGDTIKDITIINKKETIILGPGLRREADTVFAYKAGILKKTEPAVYYVDSYQKR 64
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP + V+GIV D F VDI A L LAFEG T++N P ++G L++ +++
Sbjct: 65 YVPNRGEHVVGIVTQKGGDIFKVDIGASEQASLSYLAFEGATKKNRPDIQVGDLVFAKLL 124
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M PEL C D+ GK + G L +G +F S L R +L+ P+ + L +F
Sbjct: 125 VASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLIRKILNR-NSPLFKTLAHNQAF 183
Query: 189 EIAVGLNGRVWVNAES 204
E+A G+NGRVWV A +
Sbjct: 184 EVAAGMNGRVWVKART 199
>gi|348511781|ref|XP_003443422.1| PREDICTED: exosome complex component RRP40-like [Oreochromis
niloticus]
Length = 244
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 134/237 (56%), Gaps = 16/237 (6%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL-----------GGGLRQECDSVSVIKAGKLRFSKPN 59
V ++++PGD + S + I L G GLR+ D + V K+G LR +PN
Sbjct: 9 VGEVLLPGD---EFSFEAEEKISLTAPVKSEKVVCGPGLRRCGDRLVVFKSGVLRHKEPN 65
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
+W++S Q+RYVP ++++GIV D F VD G A L L FEG T+RN P +
Sbjct: 66 VFWIDSQQRRYVPAKGESIIGIVTAKSGDVFKVDFGGSEQASLSYLTFEGATKRNRPNVQ 125
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPV 178
+G L++ + + AN M PEL C D+SG+A G+ G +F S GL R LL +P +
Sbjct: 126 VGDLVFAQFLIANKDMEPELVCIDSSGRANGMGVFGAGGLLFRVSLGLVRRLL-APHSDI 184
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
+L + E+ VG+NGR+WV + + ++++N + ++E+++A Q++ + K+ Q
Sbjct: 185 RSDLEQLFPCELVVGMNGRIWVKSATVQQTLIIANLLQSAETMTAQQRQQLFRKVQQ 241
>gi|355567614|gb|EHH23955.1| Exosome complex exonuclease RRP40 [Macaca mulatta]
Length = 272
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 132/224 (58%), Gaps = 7/224 (3%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNKY---WVESSQKRYVP 72
G+ L L++ +++ G GLR+ D + V K G+LR +P V+S QKRYVP
Sbjct: 49 GERPLSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGRVDSQQKRYVP 108
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN
Sbjct: 109 VKGDHVIGIVTAKSGDIFRVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVAN 168
Query: 133 PGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIA 191
M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI
Sbjct: 169 KDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIV 227
Query: 192 VGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
G+NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 228 FGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 271
>gi|403416851|emb|CCM03551.1| predicted protein [Fibroporia radiculosa]
Length = 230
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 122/208 (58%), Gaps = 12/208 (5%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQ--ECDSVSVI---KAGKLRFS-KPNKYWVESSQK 68
++PG+ V + +KLG GL Q D S I +AG+L S +++W+ES+ +
Sbjct: 4 ILPGEAV----PAQHVNLKLGPGLLQLSSADGKSSIISTRAGELNHSANRSRWWIESNAR 59
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP +++V+G+V+ +N+ VDI +A L LAFEG T+RN P ++GSLLY RV
Sbjct: 60 RYVPASQESVIGVVIARSGENWRVDIGAAHMATLDGLAFEGATKRNRPNLKVGSLLYARV 119
Query: 129 VKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
A+ M PEL C DA + AE FG LK G++ S + R LL P +L LG Q
Sbjct: 120 SLAHKDMEPELECFDAQTRKAEGFGELKGGFVVHCSLKMCRHLL-DPKHFLLPMLGAQFP 178
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAI 215
E A GLNGRVW+NA+ T++ VS I
Sbjct: 179 LETATGLNGRVWINAKEAKTIIAVSRCI 206
>gi|395514413|ref|XP_003761412.1| PREDICTED: exosome complex component RRP40 [Sarcophilus harrisii]
Length = 254
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 132/236 (55%), Gaps = 12/236 (5%)
Query: 9 NLVDKIVVPGDVVLDLSSM-------TNQTIKLGGGLRQECDSV---SVIKAGKLRFSKP 58
++ ++V+PG+ +L S QT++LG +R V + + G
Sbjct: 17 TMLGQVVLPGEELLLPESAGPGTEGSAEQTLRLGSVVRPRARVVCGPGLRRCGDXXGGGG 76
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
YWV+S QKRYVP D V+GIV D F VD+ G A L LAFEG T+RN P
Sbjct: 77 GVYWVDSQQKRYVPVKGDHVIGIVTAKSGDLFKVDVGGSEPASLSYLAFEGATKRNRPNV 136
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCP 177
++G L+Y + V AN M PE+ C D+SG+A G++ +DG +F+ + GL R LL +P C
Sbjct: 137 QVGDLIYGQFVVANKDMEPEMVCIDSSGRANGMGVIGQDGLLFKVTLGLIRKLL-APECE 195
Query: 178 VLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+++E+GK EI G+NGR+WV A + ++++N + E ++ Q+K + +L
Sbjct: 196 IIQEIGKLYPLEIVFGMNGRIWVKARTIQQTLILANVLEACEHMTTEQRKQIFSRL 251
>gi|354485357|ref|XP_003504850.1| PREDICTED: exosome complex component RRP40-like, partial
[Cricetulus griseus]
Length = 189
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 114/189 (60%), Gaps = 7/189 (3%)
Query: 53 LRFSKPNK-----YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
LR +P YWV+S QKRYVP D V+GIV+ D F VD+ G A L LAF
Sbjct: 1 LRHKEPGGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAF 60
Query: 108 EGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGL 166
EG T+RN P ++G L+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL
Sbjct: 61 EGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGL 120
Query: 167 SRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQ 226
R LL +P C +++ELGK EI G+NGR+WV A++ ++++N + E ++ Q+
Sbjct: 121 IRKLL-APDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTDQR 179
Query: 227 KIMVDKLLQ 235
K + +L +
Sbjct: 180 KQIFARLAE 188
>gi|402223059|gb|EJU03124.1| hypothetical protein DACRYDRAFT_21427 [Dacryopinax sp. DJM-731 SS1]
Length = 200
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 10/181 (5%)
Query: 55 FSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN 114
SK ++WVE+ +RY+P +++V+G++V A+ + VD+ +A L LAFEG T+RN
Sbjct: 18 HSKKQQHWVETESRRYIPAPQESVIGVIVHRSAEAYRVDLGSAHLATLDALAFEGATKRN 77
Query: 115 IPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSS 173
P ++G+L+Y RV AN M+PEL C DA+ + A+ FG LKDG+M E S G R LL S
Sbjct: 78 RPALKVGNLVYARVSLANRDMDPELECFDATTRKADGFGELKDGFMVECSLGTCRKLLDS 137
Query: 174 PTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM--------NSESLSAVQ 225
T +L L ++ FE+AVG+NGRVWV A S + VS AI + E S +Q
Sbjct: 138 -THFLLPALAQKFPFEVAVGVNGRVWVRAGSTKATIGVSRAIQMLDNRRTSDEEVASYIQ 196
Query: 226 Q 226
Q
Sbjct: 197 Q 197
>gi|345308214|ref|XP_001511305.2| PREDICTED: exosome complex component RRP40-like [Ornithorhynchus
anatinus]
Length = 253
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 35 GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKAD 88
G GLR+ + V K G LR +P YWV+SSQKRYVP D V+GIV D
Sbjct: 47 GPGLRRTDCCLLVTKCGLLR-RRPGGAAGFGMYWVDSSQKRYVPVKGDHVIGIVTAKTGD 105
Query: 89 NFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKA 148
F VDI G A L LAFEG T+RN P ++G L+Y + + AN M PE++C + GK
Sbjct: 106 LFKVDIGGSETASLSYLAFEGATKRNRPDVQVGDLIYGQFIVANKDMEPEIACISSGGKG 165
Query: 149 AEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPST 207
G++ +DG + + + GL R LL SP+C +++E+ K EI +G+NGR+WV A++
Sbjct: 166 NGMGVIGQDGLLIKATLGLIRKLL-SPSCEIIQEMSKLFPMEIVIGMNGRIWVKAKTIQQ 224
Query: 208 VVLVSNAIMNSESLSAVQQKIMVDKLLQR 236
++++N + E ++ Q+K ++ +L R
Sbjct: 225 TLILANILEACEFMTTDQRKRILARLADR 253
>gi|392566536|gb|EIW59712.1| exosome complex exonuclease RRP40 [Trametes versicolor FP-101664
SS1]
Length = 230
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 128/228 (56%), Gaps = 12/228 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDS-----VSVIKAGK-LRFSKPNKYWVESSQ 67
+V+PG+ V + +KLG GL Q + + +AGK + K NK+W+E +
Sbjct: 3 LVLPGEHV----PAQHVNLKLGPGLLQSSSTQGQAAIVSTRAGKVMNNPKGNKWWIEGNS 58
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
+RY+P +++V+G+V+ +N+ VDI +A L LAFEG T+RN P ++GSLLY R
Sbjct: 59 RRYIPAPQESVVGVVISRSGENWRVDIGSAHMASLDGLAFEGATKRNRPNLKVGSLLYAR 118
Query: 128 VVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V A+ M PEL C DA + AE FG LK G+M + S + R+LL P + LG +
Sbjct: 119 VSLAHKDMEPELECFDAQTRKAEGFGELKGGFMVQCSLKMCRLLL-DPKHFLFPLLGARF 177
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
E AVG+NGRVWVN + P + V+ I + +++ V K L
Sbjct: 178 PLETAVGINGRVWVNCKDPRQTIAVARCIEAVDPDGGGMEEVAVKKFL 225
>gi|432961013|ref|XP_004086532.1| PREDICTED: exosome complex component RRP40-like [Oryzias latipes]
Length = 250
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 130/237 (54%), Gaps = 16/237 (6%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL-----------GGGLRQECDSVSVIKAGKLRFSKPN 59
V +++VPGD + +TI L G GLR+ D + V+K+G LR P
Sbjct: 15 VGQVLVPGD---EFCFGAEETISLSESAKPERAVCGPGLRRSGDRLVVMKSGVLRHKPPL 71
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
+W++S QKRYV +TV+GIV D F VD G +A L LAFEG T+RN P +
Sbjct: 72 TFWIDSQQKRYVATKGETVIGIVTARAGDTFRVDFGGSELASLSYLAFEGATKRNRPNVQ 131
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPV 178
+G L++ + + AN M PEL C D SG+A G G + + S GL R LL +P +
Sbjct: 132 VGDLVFAQFLIANKDMEPELVCIDGSGRANGMGAFGAGGLLIKVSLGLVRRLL-APNSDI 190
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
+L + E+ VG+NGRVWV A S ++V+N + + ++++ Q++ + ++ Q
Sbjct: 191 RLDLEQLFPCELVVGMNGRVWVRASSVQQTLIVANLLQSCDTMTTQQRQQLFRRVQQ 247
>gi|449548599|gb|EMD39565.1| hypothetical protein CERSUDRAFT_111881 [Ceriporiopsis subvermispora
B]
Length = 230
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 126/209 (60%), Gaps = 12/209 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQE--CDSVSVI---KAGKLRFS-KPNKYWVESSQ 67
+V+PG+ + S + +KLG GL Q+ D S I +AG+L S +K+W++S+
Sbjct: 3 LVLPGEQI----SAQHVNLKLGPGLLQQPSVDGKSPIVSTRAGELHHSANRSKWWIDSNS 58
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
+RYVP +++V+G+V+ +N+ VDI +A L LAFEG T+RN P ++GSLLY R
Sbjct: 59 RRYVPAPQESVIGVVIARSGENWRVDIGSAHVASLDGLAFEGATKRNRPNLKVGSLLYAR 118
Query: 128 VVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V A+ M PEL C DA + AE FG LK G++ S + R+L+ P+ +L LG +
Sbjct: 119 VSLAHKDMEPELECFDAQTRKAEGFGELKGGFLINCSLRMCRLLM-DPSHFLLPLLGSRF 177
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
E A G+NGRVW+N++ P ++ S I
Sbjct: 178 PLEAATGVNGRVWINSKEPRHIIAASRCI 206
>gi|393246498|gb|EJD54007.1| exosome complex exonuclease RRP40 [Auricularia delicata TFB-10046
SS5]
Length = 232
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 124/232 (53%), Gaps = 17/232 (7%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLR--QECDSVS-----VIKAGKLRF-SKPNKYWVES 65
V+PGD V T+KLG GL E S S KAG L +K K+WVES
Sbjct: 4 FVLPGDNV----PAQGHTLKLGPGLMKLHEAPSASGSGIIATKAGTLHHDAKGIKWWVES 59
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+ +RYVP ++ V+G+V + + VDI G A L LAFEG ++RN P ++G+L+Y
Sbjct: 60 NARRYVPAAQEGVIGVVAHKAGEGYRVDIGGAHYASLDGLAFEGASKRNRPMLKVGTLVY 119
Query: 126 VRVVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
R+ A+ M PEL C DA + +E FG LK G+M S G SR LL P +L LG
Sbjct: 120 ARISLAHKDMEPELQCYDAQTRKSEGFGELKGGFMQPCSLGTSRALL-DPAHYLLPMLGA 178
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVS---NAIMNSESLSAVQQKIMVDKL 233
+ E+AVG+NGRVW A + VS NA+ + + K+ +D L
Sbjct: 179 RFPLEVAVGVNGRVWFKAPEARQTIAVSRCINALNDRPETTGASMKLFLDSL 230
>gi|353244089|emb|CCA75543.1| related to RRP40-protein involved in ribosomal RNA processing,
component of the exosome complex [Piriformospora indica
DSM 11827]
Length = 230
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 128/227 (56%), Gaps = 12/227 (5%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECD-----SVSVIKAGKLRFSKPNKYWVESSQKR 69
V PG + L+ T +KLG GL Q+ D S+ +AG L S NKY+VES+ +R
Sbjct: 6 VFPGHI---LTPPTLSNLKLGPGLYQQRDRDGQTSIIATRAGTLHKSGKNKYYVESNGRR 62
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP ++ V+G+V +++ VDI A L LAFEG ++RN P+ ++GSL+Y RV
Sbjct: 63 YVPAAQEPVVGVVTARSGESYRVDIGSAHPATLDALAFEGASKRNRPQLKVGSLVYARVS 122
Query: 130 KANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN + PEL C DA + A+ FG LK G + S GL+R LL P +L LG + +
Sbjct: 123 LANKDLEPELECFDAQTRKADGFGELKGGLVISCSLGLARKLL-DPAHFLLPLLGTKFAL 181
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKL 233
+ A+G+NGR+W +P + +S I ++ + L A + ++ L
Sbjct: 182 DAAIGVNGRIWFKTATPKQTIAISRCIQAVDEDQLDAQALNVFLNTL 228
>gi|321469195|gb|EFX80176.1| hypothetical protein DAPPUDRAFT_304185 [Daphnia pulex]
Length = 242
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 136/238 (57%), Gaps = 5/238 (2%)
Query: 3 AKPSTANLVDKIVVPGDVVLDLSSMTNQTIK--LGGGLRQECDSVSVIKAGKLRF-SKPN 59
A+ S + V++I +PGD V + T+K LG GLR+ + V K+G LR + P
Sbjct: 2 AEKSFSTHVNQIYLPGDSVTLSKTDEISTVKIVLGPGLRKYGKQILVTKSGVLRTKASPA 61
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
YW++ KRYVP D V+G+V + +++ V+I A L +AF G T++N P +
Sbjct: 62 TYWIDCHHKRYVPARGDDVIGVVTNKVGESYKVNIGSSEEASLSSIAFPGATKKNKPNIQ 121
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLK-DGYMFETSTGLSRMLLSSPTCPV 178
IG L++ +++ A+ M PEL C ++ G+ G+L G++F R LL +P C +
Sbjct: 122 IGDLVFAKLLIASIDMEPELVCVNSLGENVGLGVLSTSGFLFTVPLHHIRKLL-NPECTL 180
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQR 236
L+ LGK LSFEIAVG+NG++W+ A+S + ++ AI SE ++ + + K + R
Sbjct: 181 LKSLGKALSFEIAVGMNGKIWIKAKSVKQTIALARAISISEHMNKEEMNKLCRKFVDR 238
>gi|167536294|ref|XP_001749819.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771746|gb|EDQ85408.1| predicted protein [Monosiga brevicollis MX1]
Length = 233
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 122/229 (53%), Gaps = 12/229 (5%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVS----VIKAGKLRFSKPNKYWVESSQK 68
++VVPGD + + LG GL + S V G LR +WV+ +
Sbjct: 8 RVVVPGD---RFPLPDSGKVVLGPGLTTQQSSHGSEGVVTHGGILRQKGEATFWVDIATH 64
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
D VLGI++ + F VDI G + A LP LAFEG TRRN P+ G L+ R+
Sbjct: 65 NPQTAEGDQVLGIIIGNAGEGFLVDIGGASNALLPGLAFEGATRRNRPRLNPGDLVLARL 124
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M+PEL+C + GK+A G L+ G + E S GL R L C VL ELG + F
Sbjct: 125 KVANRDMDPELTCVTSGGKSAGMGHLEGGLLREISLGLCRR-LRGKNCRVLTELGSRKKF 183
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
E+ VG+NGR+W+ E+P VL++NAI SE +S Q V KL+ RI
Sbjct: 184 ELCVGMNGRMWLKTEAPMDAVLLANAIEASELMSDKQ----VTKLVNRI 228
>gi|213409329|ref|XP_002175435.1| exosome complex exonuclease RRP40 [Schizosaccharomyces japonicus
yFS275]
gi|212003482|gb|EEB09142.1| exosome complex exonuclease RRP40 [Schizosaccharomyces japonicus
yFS275]
Length = 235
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 129/230 (56%), Gaps = 9/230 (3%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDS----VSVIKAGKLRFSKPNKYWVESSQKR 69
V PGDVV ++ +++LG GL + + +AG L + + ++ + QKR
Sbjct: 9 FVFPGDVVEGADTLN--SLRLGPGLVYRNNGTEERICATRAGVLCTAPKHTFYQDFRQKR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P + D V+G +V AD + VDI A L LAFE TR++ P +GSL+Y RV
Sbjct: 67 YIPSLNDHVVGQIVSRNADGYRVDIGSAHSAQLNGLAFENVTRKSKPNLAVGSLVYARVS 126
Query: 130 KANPGMNPELSCTDA-SGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEELGKQLS 187
A+ M PEL C DA SGKAA FG LK GY+ + S R LL S +L +G +
Sbjct: 127 LADKDMEPELECVDATSGKAAGFGELKGGYLIQNISLSHVRSLLQSSNV-LLSSIGTHIP 185
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FEIA+GLNGR+WVN+ S T V ++NAI SE S + ++ +L+ +
Sbjct: 186 FEIALGLNGRIWVNSGSIQTTVAIANAIKQSEYKSPEECTELIHAILKTL 235
>gi|154321644|ref|XP_001560137.1| hypothetical protein BC1G_00969 [Botryotinia fuckeliana B05.10]
gi|347833632|emb|CCD49329.1| similar to exosome complex exonuclease Rrp40 [Botryotinia
fuckeliana]
Length = 243
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 139/237 (58%), Gaps = 14/237 (5%)
Query: 11 VDKIVVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRF-SKPNKYWVESS 66
+ V+PGD + L S + +KLG GLR ++++ AG+LR S+ N WVE +
Sbjct: 3 TETFVLPGDHIASELLPSHPSLPLKLGPGLRHIPPNTITSTVAGQLRTDSRKNAVWVEFN 62
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLY 125
RY+P V D V+ + D F+ ++ T A LPVL+FEG T++ P+ E G+L+Y
Sbjct: 63 AGRYIPTVGDLVIASIKKSAGDVFYANLSDFTSDASLPVLSFEGATKKTRPQLEKGALVY 122
Query: 126 VRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLS-RMLLSSPT----CPVL 179
RV AN M+PEL C AS GK+ G L+ G +F+ S G++ RM+++ P +L
Sbjct: 123 ARVTLANKHMDPELECVSASTGKSEGLGPLEGGMLFDVSLGMARRMMMARPADQGGLTIL 182
Query: 180 EELGKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKL 233
EELG+ +SFEIAVG NG+VWV++++ T + + A+ + + LS QK + KL
Sbjct: 183 EELGEAGVSFEIAVGRNGKVWVDSKTVKTTLAIGKALKETDEKGLSPEDQKKLAKKL 239
>gi|391327223|ref|XP_003738104.1| PREDICTED: exosome complex component RRP40-like [Metaseiulus
occidentalis]
Length = 231
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 4/222 (1%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDS-VSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+ VPGD V + N + LG GL Q+ D+ V ++AG L F P YW+ES K+Y P
Sbjct: 8 VAVPGDRVE--VNEKNSPVVLGPGLLQDNDNRVVALRAGILHFKSPRTYWLESHIKKYWP 65
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+G ++ +N+ V+I GP A L +FEG T+RN P + G+L+Y +V+ A+
Sbjct: 66 ARGDCVIGCILQKAGENYRVNIWGPEPATLSPFSFEGATKRNKPNLKPGNLIYCQVLAAH 125
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRM-LLSSPTCPVLEELGKQLSFEIA 191
M PE+ C ++ G+ FG+L+ + L + LL S CP+L LG++L +E+A
Sbjct: 126 KAMEPEVVCINSYGRKGAFGVLESDTSNLITLPLEVIHLLLSKNCPLLTTLGRKLQYEVA 185
Query: 192 VGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+G NG+VWVN S + + +A+ LS Q + M ++
Sbjct: 186 IGQNGKVWVNGNSVKNTLAICSALKACCKLSIEQIREMCQRI 227
>gi|156543108|ref|XP_001605422.1| PREDICTED: exosome complex component RRP40-like [Nasonia
vitripennis]
Length = 236
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 127/212 (59%), Gaps = 5/212 (2%)
Query: 11 VDKIVVPGDVVLDLSSM-TNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V IV+PGD + + S NQ + LG GLR + ++V KAG L+ + + Y+V+S QKR
Sbjct: 5 VGDIVMPGDRIQGIESADKNQKVILGPGLRTDGETVYACKAGILK-KRISIYYVDSYQKR 63
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P + V+G+V D F VDI A L L FEG ++RN P ++G ++Y +++
Sbjct: 64 YIPSQGENVVGVVTQKAGDIFRVDIGANEPAALSYLGFEGASKRNRPDVQVGDIVYAKLI 123
Query: 130 KANPGMNPELSCTDASGKAAEFGLLK-DGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M EL C D+ GK + G+L +G + S L R +L + CP+L L ++L +
Sbjct: 124 VASKDMESELVCVDSFGKKGKLGVLSPNGMLLTCSLSLVRKILKA-NCPLLRLLSEELKY 182
Query: 189 EIAVGLNGRVWVNAESP-STVVLVSNAIMNSE 219
EIAVG+NG++W+ ++S + V+NAI+ +E
Sbjct: 183 EIAVGMNGKIWIKSKSSVEDTIAVANAILAAE 214
>gi|390603322|gb|EIN12714.1| hypothetical protein PUNSTDRAFT_130962 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 231
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 124/208 (59%), Gaps = 12/208 (5%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECDS-----VSVIKAGKLRFSKPN-KYWVESSQK 68
V+PG+ V + +KLG GL Q+ + + +AG L S K+W++S+ +
Sbjct: 5 VLPGEHV----PAQHVNLKLGPGLLQQTSADGSEYIMSTRAGALNHSSNGAKWWIDSNSR 60
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP +++V+G+V+ +N+ VDI +A L LAFEG T+RN P ++GSL+Y RV
Sbjct: 61 RYVPAPQESVVGVVIARSGENWRVDIGSAHMATLDGLAFEGATKRNRPNLKVGSLVYARV 120
Query: 129 VKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
A+ M PEL C DA + AE FG LK G++ + S ++R+LL P+ +L LG++
Sbjct: 121 SLAHKDMEPELECFDAQTRKAEGFGELKGGFLVKCSLKMARLLL-DPSHFLLPFLGQRFP 179
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAI 215
E+A G+NGRVW+NA+ + VS I
Sbjct: 180 LEVATGVNGRVWINAKDVKQTIAVSRCI 207
>gi|389744768|gb|EIM85950.1| exosome complex exonuclease RRP40 [Stereum hirsutum FP-91666 SS1]
Length = 230
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 132/231 (57%), Gaps = 12/231 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECD---SVSVI--KAGKLRFS-KPNKYWVESSQ 67
IV+PG+ V + +KLG GL+Q + S SV+ +AG+L+ S +K+WVES+
Sbjct: 3 IVLPGETV----PAQHVNLKLGPGLQQLSNAEGSTSVVSTRAGELQHSANGSKWWVESNA 58
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
+RYVP +++V+G+V + F VDI G A L LAFEG +RRN P ++GS++Y R
Sbjct: 59 RRYVPAPQESVVGVVTGRMGEGFRVDIGGAHNASLDALAFEGASRRNRPALKVGSVVYAR 118
Query: 128 VVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V A+ M PEL C DA + AE FG LK G++ S + R LL P +L LG +
Sbjct: 119 VSLAHKDMEPELECFDAQTRKAEGFGELKGGFLTRCSLKMCRQLL-DPDYFLLPMLGSRF 177
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ AVG+NGRVWV+A+ + V+ I ++ +I V + L +
Sbjct: 178 PLDAAVGVNGRVWVSAKEVKQTIAVTRCIEAADPDGGGMDEISVKQFLNTL 228
>gi|393907691|gb|EJD74743.1| hypothetical protein LOAG_17979 [Loa loa]
Length = 245
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 6/229 (2%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQ---ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+I +PGD++ + +T +G GL + D + V++ G R S K W+ +R
Sbjct: 3 EIHLPGDILSLVVPGKGRTEIIGCGLERVINNPDQLLVVQPGIRRVSH-GKQWMAVHSRR 61
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV + F +DI IAF+ L+FEG TRRN P ++G L+Y V
Sbjct: 62 YVPQKGDFVIGIVTSVHGETFKIDIGAADIAFISFLSFEGATRRNRPNLKVGDLIYASVT 121
Query: 130 KANPGMNPELSCTDASGKAAEFG-LLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A + PEL+C D G+A G L G++F+TS L R +L SPT +L +GK + F
Sbjct: 122 TATKHLEPELTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRIL-SPTSKLLSLIGKDIKF 180
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
EI G+NGR+W+ + V+ V I +SE + VDK + R+
Sbjct: 181 EITSGINGRIWIKGINVVEVIAVYRIIKDSEFIPEPDIPAFVDKQISRL 229
>gi|393212995|gb|EJC98493.1| hypothetical protein FOMMEDRAFT_149221 [Fomitiporia mediterranea
MF3/22]
Length = 231
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 12/208 (5%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSV-----IKAGKLRFS-KPNKYWVESSQK 68
+PG++V + +KLG GL D +AG L S +K+WVES+ +
Sbjct: 5 TLPGELV----DAKHANLKLGPGLLVLSDQTGTSNIISTRAGALNHSANGSKWWVESNSR 60
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP ++ V+G V+ + + +DI G +A L AFEG T+RN P F+I SL+Y RV
Sbjct: 61 RYVPAPQEYVVGTVIAKAGEGWRIDIGGAHMASLDGYAFEGATKRNKPNFKINSLIYARV 120
Query: 129 VKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
A+ M PEL C DA + +E FG LK G++ S G+ R LL P +L LG
Sbjct: 121 SLAHKDMEPELECFDAQTRKSEGFGELKGGFLVRCSLGMCRSLL-DPKYFLLPLLGSMFP 179
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAI 215
E AVG+NGRVW+N +SP V V+ I
Sbjct: 180 LETAVGMNGRVWINTKSPKHTVAVARCI 207
>gi|326923196|ref|XP_003207825.1| PREDICTED: exosome complex exonuclease RRP40-like, partial
[Meleagris gallopavo]
Length = 153
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 61 YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEI 120
YWV+S QKRYVP D V+GIV D F +D+ G A L LAFEG T+RN P ++
Sbjct: 7 YWVDSQQKRYVPVKGDHVIGIVTGKVGDVFRLDVGGSEQASLSYLAFEGATKRNRPNVQV 66
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVL 179
G L+Y + + AN M PE+ C D+SG+A+ G++ +DG++F+ S GL R LL +P C ++
Sbjct: 67 GDLIYGQFLVANKDMEPEMVCIDSSGRASGMGVIGQDGFLFKVSLGLIRKLL-APKCEII 125
Query: 180 EELGKQLSFEIAVGLNGRVWVNAES 204
+EL + FE+ +G+NGR+WV A++
Sbjct: 126 QELSQLYPFELVLGMNGRIWVKAKT 150
>gi|340378463|ref|XP_003387747.1| PREDICTED: hypothetical protein LOC100638557 [Amphimedon
queenslandica]
Length = 3258
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 126/226 (55%), Gaps = 15/226 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLG-----GGLRQECDSVSVIKAGKLRFSK---PNKYWVES 65
IV+PGD + IKLG GG R+E SV +K G LR + +WV +
Sbjct: 10 IVLPGDAI---PLAVGNDIKLGPGTYSGGGREEGSSV-FVKPGILRRKDRDGSSSFWVNT 65
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
KRYVP + V+G+V+ + VDI A LP LAFEG T+RN P ++G L++
Sbjct: 66 QHKRYVPSEGEKVIGVVLR-TGRVYRVDIGASQNASLPELAFEGATKRNKPIVQVGDLVF 124
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELGK 184
+ +A+P PE++C D+SG+A+ GLLK G + + L R LLS C V+EEL K
Sbjct: 125 GSLCQADPDFEPEMTCVDSSGRASGMGLLKKPGCVISCTLSLCRRLLSK-QCAVMEELQK 183
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMV 230
FE VGLNGRVW++A + +++ N I +SE +S K MV
Sbjct: 184 HYKFECVVGLNGRVWLSAPTLMQTIIIRNCIKSSEFMSEDSIKEMV 229
>gi|268566653|ref|XP_002639778.1| C. briggsae CBR-EXOS-3 protein [Caenorhabditis briggsae]
Length = 226
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 4/215 (1%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+ +PGDV+ + SS + I G LR E V+ + G R S K W+ KRY+P
Sbjct: 3 VYLPGDVINEPSSSDSSIIGYGINLRGEKKVVT--QPGAFR-SDEGKIWLSVHSKRYIPQ 59
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+ IV D F +DI A + FEG T+RN P + G ++Y V P
Sbjct: 60 EGDRVIAIVTSKTGDFFRLDIGTAEYAMISFTNFEGATKRNRPNLKTGDIIYATVFDTTP 119
Query: 134 GMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
EL+C D +A G L GYMF+ S R L+ +P+C +L+ +GK FEI VG
Sbjct: 120 RTEAELTCVDDEKRARGMGQLNGGYMFKVSLNHCRRLI-NPSCEILQTMGKFFKFEITVG 178
Query: 194 LNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKI 228
+NGR+WVNA + ++ + + I SE ++ + I
Sbjct: 179 MNGRIWVNAPTTEEIIKIHDVINKSEFITGEDELI 213
>gi|380493544|emb|CCF33800.1| exosome complex exonuclease RRP40 [Colletotrichum higginsianum]
Length = 242
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 130/235 (55%), Gaps = 17/235 (7%)
Query: 15 VVPGDVVLDLS---SMTNQTIKLGGGLRQ-ECDSVSVIKAGKL-RFSKPNKYWVESSQKR 69
V+PGD + D S S ++LG GLR + AGKL K N WVE + R
Sbjct: 8 VLPGDEI-DASLIPSHQKLPLRLGPGLRHVPPRQIVPTIAGKLVSDRKKNSIWVEQTSGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFV---DIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
Y+P D V+G + A+ ++V D P A LP LAFE T+++ P+ G+L+Y
Sbjct: 67 YIPAAGDLVIGTIQRTAAELYYVLLADYSTP--ATLPQLAFEMATKKSRPQLASGALVYA 124
Query: 127 RVVKANPGMNPELSCT-DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP--VLEELG 183
RV AN M+PEL C ++GKA G L G +F+ S G++R LL T VLEELG
Sbjct: 125 RVTLANKHMDPELECVYQSTGKADGLGPLVGGMLFDISLGMARRLLKPKTTDLVVLEELG 184
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQ 235
+FE AVG NG++WVN+ES ++ V AI ++ L+A QQK +V L+Q
Sbjct: 185 ATGAAFETAVGRNGKIWVNSESVKIIIAVGRAIQETDEHGLTAEQQKKLVRSLIQ 239
>gi|409078952|gb|EKM79314.1| hypothetical protein AGABI1DRAFT_74231 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 231
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 13/209 (6%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQ------ECDSVSVIKAGKLRFS-KPNKYWVESSQ 67
VVPG+ + + +KLG GL+Q + +AG + S +++W+ES+
Sbjct: 4 VVPGEKI----DAQHVNLKLGPGLQQISSNGPSQSKIISTRAGAVNHSANGSRWWIESNS 59
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
+RYVP ++++V+G +V + + + VDI A L LAFE T+RN P ++G L+Y R
Sbjct: 60 RRYVPALQESVVGAIVQRQGEGYRVDIGSAHSATLDGLAFESATKRNKPNLKVGCLVYAR 119
Query: 128 VVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V A+ M+PEL C DA +E FG LK G++ + S + R LL P +L LG +
Sbjct: 120 VSLAHKDMDPELECFDAQTHKSEGFGELKGGFVVKCSLKMCRDLL-DPKHFLLPLLGSRF 178
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
FE AVG+NGRVW+NA+ P V+ ++ I
Sbjct: 179 PFETAVGMNGRVWINAKQPGQVIAIARCI 207
>gi|310791070|gb|EFQ26599.1| exosome complex exonuclease RRP40 [Glomerella graminicola M1.001]
Length = 242
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 130/237 (54%), Gaps = 17/237 (7%)
Query: 15 VVPGDVVLDLS---SMTNQTIKLGGGLRQ-ECDSVSVIKAGKL-RFSKPNKYWVESSQKR 69
V+PGD + D S S ++LG GLR + AGKL K N WVE + R
Sbjct: 8 VLPGDEI-DASLIPSHQKLPLRLGPGLRHVPPRQIVPTIAGKLVSDRKKNSIWVEQTSGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFV---DIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
Y+P V D V+G V A+ ++V D P A LP L+FE T++ P+ G+L+Y
Sbjct: 67 YIPTVGDLVIGTVQRTAAELYYVLLADYSTP--AILPQLSFEMATKKTRPQLASGALVYA 124
Query: 127 RVVKANPGMNPELSCT-DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP--VLEELG 183
RV AN M+PEL C ++GKA G L G +F S G++R LL T VLEELG
Sbjct: 125 RVTLANKHMDPELECVYQSTGKADGLGPLVGGMLFNISLGMARRLLKPKTTDLVVLEELG 184
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQRI 237
+FE AVG NG++WVN+ES T++ V AI ++ L+ QQK +V L++ +
Sbjct: 185 ATGAAFETAVGRNGKIWVNSESAKTIIAVGRAIQETDERGLTVDQQKKLVRSLIKSL 241
>gi|426195861|gb|EKV45790.1| hypothetical protein AGABI2DRAFT_207051 [Agaricus bisporus var.
bisporus H97]
Length = 231
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 13/209 (6%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQ------ECDSVSVIKAGKLRFS-KPNKYWVESSQ 67
VVPG+ + + +KLG GL+Q + +AG + S +++W+ES+
Sbjct: 4 VVPGEKI----DAQHVNLKLGPGLQQISSNGPSQSKIISTRAGAVNQSANGSRWWIESNS 59
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
+RYVP ++++V+G +V + + + VDI A L LAFE T+RN P ++G L+Y R
Sbjct: 60 RRYVPALQESVVGAIVQRQGEGYRVDIGSAHSATLDGLAFESATKRNKPNLKVGCLVYAR 119
Query: 128 VVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V A+ M+PEL C DA +E FG LK G++ + S + R LL P +L LG +
Sbjct: 120 VSLAHKDMDPELECFDAQTHKSEGFGELKGGFVVKCSLKMCRDLL-DPKHFLLPLLGSRF 178
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
FE AVG+NGRVW+NA+ P V+ ++ I
Sbjct: 179 PFETAVGMNGRVWINAKQPGQVIAIARCI 207
>gi|302688503|ref|XP_003033931.1| hypothetical protein SCHCODRAFT_36527 [Schizophyllum commune H4-8]
gi|300107626|gb|EFI99028.1| hypothetical protein SCHCODRAFT_36527, partial [Schizophyllum
commune H4-8]
Length = 175
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
Query: 49 KAGKLRFSKPN-KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
KAG + S N ++WV+++ +RYVP +++VLG+V + F VDI A L LAF
Sbjct: 4 KAGTVHHSPNNARWWVDANSRRYVPAAQESVLGVVTLRVGEAFRVDIGAAHNANLDGLAF 63
Query: 108 EGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGL 166
EG T+RN P+ ++GSL+Y RV A+ M+PEL C DA + AE FG LK G++ S +
Sbjct: 64 EGATKRNRPQLKVGSLVYARVSLAHRDMDPELECFDAQTRKAEGFGELKGGFLVHCSLLM 123
Query: 167 SRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
R LL SP +L LG E AVG+NGRVW+NA +P V+ + I
Sbjct: 124 CRQLL-SPDHFLLPLLGSMFPLEAAVGMNGRVWINAPNPKQVIAMKRCI 171
>gi|407918470|gb|EKG11741.1| hypothetical protein MPH_11234 [Macrophomina phaseolina MS6]
Length = 251
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 131/249 (52%), Gaps = 23/249 (9%)
Query: 10 LVDKIVVPGDVV----LDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRF-SKPNKYWV 63
+ IV+PGD V LD S + + +G GLR +++ AG L ++ N WV
Sbjct: 1 MATDIVLPGDEVPQSILDASQNHKKPLIIGPGLRHIPPSTITTTIAGSLNVDTRKNAIWV 60
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGS 122
E + RYVP D +L V + F I T +A LP LAFEG T++ P+ G+
Sbjct: 61 ERNGGRYVPVQNDVILATVHHSATEMFICSITPYTPMANLPHLAFEGATKKTRPQLAPGA 120
Query: 123 LLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLL-------SSP 174
L+Y R+ A+ M PEL C A +GKA G LK G +FE S G++R LL +
Sbjct: 121 LVYARISAASKHMEPELECVSATTGKADGLGPLKGGMVFEISLGMARRLLMPAGKKNAGE 180
Query: 175 TCP----VLEELGKQLSFEIAVGLNGRVWVNAESPS--TVVLVSNAIMNSE--SLSAVQQ 226
P VLEEL +++ FE+AVG NGRVWVN+E V+ V A+ ++ L Q
Sbjct: 181 GGPGKIVVLEELAERVRFEVAVGRNGRVWVNSEEGGVKVVLAVGKALTETDEKGLGIEGQ 240
Query: 227 KIMVDKLLQ 235
+ MV KLL+
Sbjct: 241 REMVSKLLK 249
>gi|156046006|ref|XP_001589558.1| hypothetical protein SS1G_09279 [Sclerotinia sclerotiorum 1980]
gi|154693675|gb|EDN93413.1| hypothetical protein SS1G_09279 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 209
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 122/203 (60%), Gaps = 12/203 (5%)
Query: 11 VDKIVVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRF-SKPNKYWVESS 66
+ V+PGD + L S + +KLG GLR ++++ AG+L+ S+ N WVE +
Sbjct: 3 TETFVLPGDHIAPELLPSHPSLPLKLGPGLRHIPPNTITSTVAGQLQTDSRKNAIWVEFN 62
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLY 125
RY+P V D V+ + D ++ ++ T A LPVL+FEG T++ P+ E GSL+Y
Sbjct: 63 AGRYIPTVGDLVIASIKKSAGDVYYANLSDFTSDASLPVLSFEGATKKTRPQLEKGSLVY 122
Query: 126 VRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLS-RMLLSSPT----CPVL 179
RV AN M+PEL C AS GK+ G L+ G +F+ S G++ RM++S P +L
Sbjct: 123 ARVTLANKHMDPELECVSASTGKSEGLGPLEGGMLFDVSLGMARRMMMSRPADQGGLTIL 182
Query: 180 EELGKQ-LSFEIAVGLNGRVWVN 201
EELG+ +SFEIAVG NG+VWV+
Sbjct: 183 EELGEAGVSFEIAVGRNGKVWVD 205
>gi|260815751|ref|XP_002602636.1| hypothetical protein BRAFLDRAFT_123025 [Branchiostoma floridae]
gi|229287947|gb|EEN58648.1| hypothetical protein BRAFLDRAFT_123025 [Branchiostoma floridae]
Length = 186
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 54/233 (23%)
Query: 8 ANLVDKIVVPGDVVLDL-SSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESS 66
A+ V K+V+PGD++ + +S + LG GLRQE + V V K G LR +PN YW++
Sbjct: 2 ADSVGKVVIPGDILSEFRASEKTSKVALGPGLRQEGEEVLVTKGGILRHKEPNLYWIDCH 61
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
Q+R +G L++
Sbjct: 62 QRR--------------------------------------------------VGDLVFA 71
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLL--KDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
+++ AN M PEL C D+ G ++ +G++ G+M TS L R +LS P C +L+ LGK
Sbjct: 72 KLLVANKDMEPELVCIDSGGHSSGYGVIPADGGFMVHTSLNLVRKILS-PNCDILKFLGK 130
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ FE AVG+NGR+WV A++P ++V+NAI +SE ++ Q + M+ +LL ++
Sbjct: 131 NVPFETAVGMNGRIWVKAKTPKDTIVVANAIASSEHMTNAQIRTMIRQLLDKL 183
>gi|429861879|gb|ELA36543.1| exosome complex exonuclease rrp40 [Colletotrichum gloeosporioides
Nara gc5]
Length = 242
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 130/235 (55%), Gaps = 17/235 (7%)
Query: 15 VVPGDVVLDLS---SMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFS-KPNKYWVESSQKR 69
V+PG+ + D S S ++LG GLR + AGKL K N WVE + R
Sbjct: 8 VLPGEEI-DASLIPSHQKLPLRLGPGLRHVPPRQIVPTIAGKLVTDRKKNSIWVEQTGGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFV---DIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
Y+P V D V+G V ++ ++V D P A LP LAFE +++N P + G+L+Y
Sbjct: 67 YIPAVGDLVVGTVQRSASEIYYVLLADYSTP--AILPQLAFEMASKKNRPHLDSGALVYA 124
Query: 127 RVVKANPGMNPELSCT-DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP--VLEELG 183
RV AN M+PEL C ++GKA G L G +F S G++R LLS T VLEELG
Sbjct: 125 RVTLANKHMDPELECVYQSTGKADGLGPLVGGMLFNISLGMARRLLSPKTTDLVVLEELG 184
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQ 235
+FE AVG NG++WVN+ES ++ V AI ++ LS QQK +V L++
Sbjct: 185 ATGAAFETAVGRNGKIWVNSESIKVIIAVGRAIQETDERGLSIDQQKKLVRSLIK 239
>gi|296412677|ref|XP_002836048.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629850|emb|CAZ80205.1| unnamed protein product [Tuber melanosporum]
Length = 273
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 134/269 (49%), Gaps = 42/269 (15%)
Query: 9 NLVDKIVVPGDVVLDLS-SMTNQTIKLGGGLRQECDSVSVI-KAGKLRF-SKPNKYWVES 65
+LV ++ PG+ + L N T K+G GL S ++ +AG+L + + W+ES
Sbjct: 2 SLVVQVRFPGETLPPLEDEKKNTTFKVGPGLTHISPSTLIVSRAGELNIDQRKHTIWMES 61
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-------PTIAFLPVLAFEGGTRRNIPKF 118
+ KRYV D ++ V+ AD++ I + A LP LAF T++ P
Sbjct: 62 NSKRYVASQNDAIIATVLRSTADSYICAIPSSNSPVPSASQAVLPHLAFPQATKKTRPVL 121
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLLS----- 172
GS++Y R+ AN ++PEL C DA SGK+ FG LK G++F S G++R LL
Sbjct: 122 HQGSVVYARISLANKHIDPELECYDADSGKSEGFGELKGGFVFGVSLGMARRLLGDAKKT 181
Query: 173 --------------------------SPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPS 206
S VLEELG+ LSFE+AVG NGR+WV++ P
Sbjct: 182 RLLRVRERKAEAGRKGEEYQDVGVDMSSGREVLEELGESLSFELAVGRNGRIWVHSGDPK 241
Query: 207 TVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
T + V I SE L+ +Q+ +V + L+
Sbjct: 242 TTLCVMRCIQQSEFLTGKEQRQLVKEALK 270
>gi|392591692|gb|EIW81019.1| exosome complex exonuclease RRP40 [Coniophora puteana RWD-64-598
SS2]
Length = 229
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 119/207 (57%), Gaps = 12/207 (5%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI---KAGKLRFSKPN--KYWVESSQKR 69
++PG++V + +KLG GL Q + S I +AG L S PN ++WVES+ +R
Sbjct: 5 ILPGELV----PAQHVNLKLGPGLLQASTTESPILATRAGALHHS-PNGARWWVESNARR 59
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP +++V+G+V + F VDI A L LAFEG T+RN P ++G+L+Y RV
Sbjct: 60 YVPAAQESVIGVVTARGGEAFRVDIGSAHHANLDGLAFEGATKRNRPNLKVGTLVYARVS 119
Query: 130 KANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A+ M PEL C DA + K+ FG LK G S + RMLL P+ +L LG +
Sbjct: 120 LAHKDMEPELECFDAQTHKSDGFGELKGGLAVTCSLKMCRMLL-DPSHFLLPFLGARFPL 178
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAI 215
+ AVG+NGRVW++ + T ++ + I
Sbjct: 179 DAAVGVNGRVWISTKDAQTTIVATRLI 205
>gi|449269330|gb|EMC80118.1| Exosome complex exonuclease RRP40, partial [Columba livia]
Length = 168
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
+YVP D V+GIV D F +D+ G A L LAFEG T+RN P ++G L+Y +
Sbjct: 1 QYVPVKGDHVIGIVTAKAGDLFKLDVGGSEQASLSYLAFEGATKRNRPNVQVGDLIYGQF 60
Query: 129 VKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
+ AN M PE+ C D+SG+++ G++ +DG++F+ S GL R LL +P C +++EL +
Sbjct: 61 LVANKDMEPEMVCIDSSGRSSGMGIIGQDGFLFKVSLGLIRKLL-APKCEIIQELSQLYP 119
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
FE+ +G+NGR+WV A++ +++ N + E ++A Q+K ++ KL
Sbjct: 120 FELVLGMNGRIWVKAKTVQQTLIIVNILEACEYMTAEQRKQVLAKL 165
>gi|414881125|tpg|DAA58256.1| TPA: hypothetical protein ZEAMMB73_922165, partial [Zea mays]
Length = 104
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 70/85 (82%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWV 63
+P+++ LVD VVPGDVVLDLS M NQTIKLG GLRQECD++ AGKLR KPNKYW+
Sbjct: 5 RPASSPLVDNYVVPGDVVLDLSEMNNQTIKLGAGLRQECDTIQATSAGKLRQLKPNKYWI 64
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKAD 88
E+SQKRY+P VEDTVLGIVVD K D
Sbjct: 65 ENSQKRYIPSVEDTVLGIVVDTKPD 89
>gi|299743406|ref|XP_002910658.1| exosome complex exonuclease RRP40 [Coprinopsis cinerea
okayama7#130]
gi|298405639|gb|EFI27164.1| exosome complex exonuclease RRP40 [Coprinopsis cinerea
okayama7#130]
Length = 233
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 15/212 (7%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECD--------SVSVIKAGKLRFS-KPNKYWVE 64
+V+PG+ V + +KLG GL Q+ + +V KAG L S +K+WVE
Sbjct: 3 VVLPGEQV----PAKHVNLKLGPGLLQQSNYTGESSETTVISTKAGVLNHSTNRSKWWVE 58
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
+ +RYVP +++V+G+V + + VDI A L LAFEG T+RN P ++GSL+
Sbjct: 59 GNSRRYVPAPQESVIGVVTQRLGEGYRVDIGSAHQASLDALAFEGATKRNKPNLKVGSLI 118
Query: 125 YVRVVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y RV A+ M PEL C DA + AE FG LK G+M + S L R LL P + LG
Sbjct: 119 YARVSLAHKDMEPELECFDAQTRKAEGFGELKGGFMIKCSLKLCRDLL-DPRHFLFPLLG 177
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
+ E A+G+NGRVW++ + + ++ I
Sbjct: 178 ARFPLESAIGMNGRVWISTKDVKHTIAIARCI 209
>gi|336275563|ref|XP_003352535.1| hypothetical protein SMAC_01369 [Sordaria macrospora k-hell]
gi|380094424|emb|CCC07803.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 246
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 14/239 (5%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQECDSVSV-IKAGKLRF-SKPNKYWVESSQKR 69
+V+PG+ + + + ++LG GLR S V AG+L + W+E + R
Sbjct: 8 VVLPGEAIDPSLIPTHKKNPLRLGPGLRHIPPSEIVPTVAGQLVVDHRKTSMWIEYNGGR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P D ++G + D ++V + T A LP LAFE T++ P+F G L+Y RV
Sbjct: 68 YIPSQGDLIIGQIARSATDFYYVSLSPYTPNATLPHLAFESATKKTRPQFASGELVYARV 127
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPT-----CPVLEEL 182
AN M+PEL C ++S GKA G LKDG +F+ S G +R LL + + VLE L
Sbjct: 128 SLANRHMDPELECVNSSTGKADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEAL 187
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQRIK 238
G++ L+FE AVG NG+VWV +ES T V V A+ ++ L Q+ +V KL++ ++
Sbjct: 188 GEEGLAFETAVGRNGKVWVGSESVKTTVAVGRALKETDEKGLGVEAQRKLVKKLVREMR 246
>gi|350295735|gb|EGZ76712.1| hypothetical protein NEUTE2DRAFT_77442 [Neurospora tetrasperma FGSC
2509]
Length = 246
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 14/239 (5%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQECDSVSV-IKAGKLRF-SKPNKYWVESSQKR 69
+V+PG+ + + + ++LG GLR S V AG+L + W+E + R
Sbjct: 8 VVLPGETIDPSLIPTHKKNPLRLGPGLRHIPPSEIVPTVAGQLVVDHRKTSMWIEYNGGR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P D ++G + D ++V + T A LP LAFE T++ P+ G L+Y RV
Sbjct: 68 YIPSQGDLIIGQIARSATDFYYVSLSPYTPNATLPHLAFESATKKTRPQLASGELVYARV 127
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPT-----CPVLEEL 182
AN M+PEL C ++S GKA G LKDG +F+ S G +R LL + + VLE L
Sbjct: 128 SLANRHMDPELECVNSSTGKADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEAL 187
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQRIK 238
G++ L+FE AVG NG+VWV +ES TVV+V A+ ++ L Q+ +V KL++ ++
Sbjct: 188 GEEGLAFETAVGRNGKVWVGSESVKTVVVVGRALRETDEKGLGVEAQRKLVKKLVREMR 246
>gi|170574747|ref|XP_001892945.1| exosome complex exonuclease RRP40 [Brugia malayi]
gi|158601257|gb|EDP38216.1| exosome complex exonuclease RRP40, putative [Brugia malayi]
Length = 244
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQ---ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+I +PGD+V + +T +G GL + D + V++ G R S K W+ +R
Sbjct: 3 EIHLPGDIVSLVVPGEKRTEIIGCGLERVINNPDQLLVVQPGIRRVSH-GKQWMAVHSRR 61
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P D V+GIV + F +DI IAF+ L+FEG TRRN P ++G L+Y V
Sbjct: 62 YIPQKGDRVIGIVTSTHGETFKIDIGSADIAFISFLSFEGATRRNRPNLKVGDLIYASVT 121
Query: 130 KANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
A + PEL+C D+ G+A GLL G++F+TS L R +LS + +L +GK + F
Sbjct: 122 TATKHLEPELTCIDSEGRARGMGLLPSGGFLFKTSLNLVRRILSP-SSRLLSLIGKDIKF 180
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDK 232
EI G+NGR+W+ + ++ V I SE + VDK
Sbjct: 181 EITSGMNGRIWIKGINVVEIIAVCRIIKESEFIPESDIPAFVDK 224
>gi|342320034|gb|EGU11977.1| Hypothetical Protein RTG_01857 [Rhodotorula glutinis ATCC 204091]
Length = 1494
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 111/208 (53%), Gaps = 20/208 (9%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP-------------- 58
++ +PGD L S ++ T+ LG GL S GK R +P
Sbjct: 3 RVALPGDP-LPSSPSSSSTLHLGPGLSTSTAPASRGGKGKERAVEPAATRAGLLGHLSQG 61
Query: 59 --NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIP 116
++W+E + KRY P + VLGI+V A+ + VDI A L LAFEG T+RN P
Sbjct: 62 DKERWWIEGTMKRYTPNPPEPVLGIIVARHAEGYRVDIGSSQGASLDALAFEGATKRNKP 121
Query: 117 KFEIGSLLYVRVVKANPGMNPELSCTDASG-KAAEFGLLKDGYMFE-TSTGLSRMLLSSP 174
++G+L+Y ++ P PE+SC D S KA+ FG L+ G++ G R LL +P
Sbjct: 122 NLKVGTLVYAHLLSTPPFSEPEISCVDPSTQKASGFGELQGGFLIRGVELGRCRALL-AP 180
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVNA 202
PVL +LG + FE+AVG+NGRVWV A
Sbjct: 181 KNPVLSKLGARFPFEVAVGMNGRVWVKA 208
>gi|85074931|ref|XP_965833.1| hypothetical protein NCU00693 [Neurospora crassa OR74A]
gi|28927646|gb|EAA36597.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 246
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 14/239 (5%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQECDSVSV-IKAGKLRF-SKPNKYWVESSQKR 69
+V+PG+ + + + ++LG GLR S V AG+L + W+E + R
Sbjct: 8 VVLPGETIDPSLIPTHKKNPLRLGPGLRHIPPSEIVPTVAGQLVVDHRKTSMWIEYNGGR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P D ++G + D ++V + T A LP LAFE T++ P+ G L+Y RV
Sbjct: 68 YIPSQGDLIIGQIARSATDFYYVSLSPYTPNATLPHLAFESATKKTRPQLASGELVYARV 127
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPT-----CPVLEEL 182
AN M+PEL C ++S GKA G LKDG +F+ S G +R LL + + VLE L
Sbjct: 128 SLANRHMDPELECVNSSTGKADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEAL 187
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQRIK 238
G++ L+FE AVG NG+VWV +ES T V+V A+ ++ L Q+ +V KL++ ++
Sbjct: 188 GEEGLAFETAVGRNGKVWVGSESVKTAVMVGRALRETDEKGLGVEAQRKLVKKLVREMR 246
>gi|336463671|gb|EGO51911.1| hypothetical protein NEUTE1DRAFT_149573 [Neurospora tetrasperma
FGSC 2508]
Length = 246
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 14/239 (5%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQECDSVSV-IKAGKLRF-SKPNKYWVESSQKR 69
+V+PG+ + + + ++LG GLR S V AG+L + W+E + R
Sbjct: 8 VVLPGETIDPSLIPTHKKNPLRLGPGLRHIPPSEIVPTVAGQLVVDHRKTSMWIEYNGGR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P D ++G + D ++V + T A LP LAFE T++ P+ G L+Y RV
Sbjct: 68 YIPSKGDLIIGQIARSATDFYYVSLSPYTPNATLPHLAFESATKKTRPQLASGELVYARV 127
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPT-----CPVLEEL 182
AN M+PEL C ++S G+A G LKDG +F+ S G +R LL + + VLE L
Sbjct: 128 SLANRHMDPELECVNSSTGEADGLGPLKDGMVFDVSLGFARRLLMAKSREEGKVEVLEAL 187
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQRIK 238
G++ L+FE AVG NG+VWV +ES TVV+V A+ ++ L Q+ +V KL++ ++
Sbjct: 188 GEEGLAFETAVGRNGKVWVGSESVKTVVVVGRALRETDEKGLGVEAQRKLVKKLVREMR 246
>gi|170089229|ref|XP_001875837.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649097|gb|EDR13339.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 227
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 13/228 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFS-KPNKYWVESSQKRY 70
+V+PG+ V + +KLG GL Q + S+I +AG L S +K+WVES+ KRY
Sbjct: 3 VVLPGEEV----PAQHVNLKLGPGLLQVPGAGSIISTRAGILNHSANRSKWWVESNSKRY 58
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130
VP +++V+G++ + + VDI A L LAFEG ++RN P ++G L+Y RV
Sbjct: 59 VPAPQESVVGVITQRLGEGYRVDIGAAHYASLDSLAFEGASKRNKPNLKVGCLVYARVSL 118
Query: 131 ANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFE 189
A+ M PEL C DA + +E FG LK G++ + LL + +L LG + E
Sbjct: 119 AHKDMEPELECFDAQTRKSEGFGELKGGFVVRCGLKMCLDLLDTKHF-LLPLLGGRFPLE 177
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIM----NSESLSAVQQKIMVDKL 233
+AVGLNGRVWVNA+ V+ + I + L A K ++D L
Sbjct: 178 VAVGLNGRVWVNAKEIKQVIAIVRCIEAVDPDGGGLDAKGVKTLLDTL 225
>gi|393907692|gb|EJD74744.1| hypothetical protein, variant [Loa loa]
Length = 191
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 96/173 (55%), Gaps = 2/173 (1%)
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+RYVP D V+GIV + F +DI IAF+ L+FEG TRRN P ++G L+Y
Sbjct: 4 HSRRYVPQKGDFVIGIVTSVHGETFKIDIGAADIAFISFLSFEGATRRNRPNLKVGDLIY 63
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFG-LLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
V A + PEL+C D G+A G L G++F+TS L R +L SPT +L +GK
Sbjct: 64 ASVTTATKHLEPELTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRIL-SPTSKLLSLIGK 122
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ FEI G+NGR+W+ + V+ V I +SE + VDK + R+
Sbjct: 123 DIKFEITSGINGRIWIKGINVVEVIAVYRIIKDSEFIPEPDIPAFVDKQISRL 175
>gi|443917435|gb|ELU38155.1| exosome complex exonuclease RRP40 [Rhizoctonia solani AG-1 IA]
Length = 234
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 18/213 (8%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQ----ECD---SVSVIKAGKLRF-SKPNKYWVES 65
+++PGD L +++T +IKLG GL+Q D SVS + G LR +K NK+W++
Sbjct: 5 LMLPGDT-LPGAALTGTSIKLGPGLQQSRGGRADGALSVSAVSPGVLRHATKGNKWWIDR 63
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+++V+G + D + VDI A L LAFEG T+RN P ++G+++Y
Sbjct: 64 R------ATQESVIGYITYRSQDMYRVDIGSAHPATLDALAFEGATKRNKPNLKVGAVVY 117
Query: 126 VRVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLS--SPTCPVLEEL 182
RV A+ M PEL C D A+ K+ FG LKDGY+ + R LS + +L L
Sbjct: 118 ARVSLAHKDMEPELECFDAATHKSDGFGELKDGYIVSCNLATCRTSLSLLDRSHYLLPLL 177
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
G ++ EIA+G+NGRVW+++++P +L+S I
Sbjct: 178 GARVPLEIAIGVNGRVWISSDTPHNTILISRCI 210
>gi|308500147|ref|XP_003112259.1| CRE-EXOS-3 protein [Caenorhabditis remanei]
gi|308268740|gb|EFP12693.1| CRE-EXOS-3 protein [Caenorhabditis remanei]
Length = 271
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 109/222 (49%), Gaps = 20/222 (9%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
I +PGDV+ + SS + I G LR D V + G LR S+ K W+ KRY+P
Sbjct: 34 IYLPGDVINEPSSSDSSIIGYGINLRG--DKRLVTQPGALR-SEEGKVWLSVHSKRYIPQ 90
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+GIV D F +DI A + FEG T+RN P + G ++Y V + P
Sbjct: 91 EGDRVIGIVTSKTGDFFRLDIGTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFDSTP 150
Query: 134 GMNPELSCTDASGKAAEFGLLKDGYMF----------------ETSTGLSRMLLSSPTCP 177
EL+C D +A G L GYMF + S R L+ SP+C
Sbjct: 151 RTEAELTCVDDEKRARGMGQLNGGYMFKVSILKLDMDCYLYFVQVSLNHCRRLI-SPSCK 209
Query: 178 VLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
+L LG FEI VG+NGR+W+NA + ++ + + ++ SE
Sbjct: 210 ILLTLGNFFKFEITVGMNGRIWINASTTDDIIKIHDILVKSE 251
>gi|406694980|gb|EKC98295.1| hypothetical protein A1Q2_07309 [Trichosporon asahii var. asahii
CBS 8904]
Length = 238
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Query: 57 KPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIP 116
K W+ KRY+P D VLG ++ A+ + VD+ +A L LAFEG T+R+ P
Sbjct: 59 KSESVWISGKSKRYIPAQRDLVLGTIIARHAEGYRVDLGSAHMASLDALAFEGATKRSKP 118
Query: 117 KFEIGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLSSPT 175
++G+L+Y RV AN M PE+ C D A+GKA FG LK G M E S L R P
Sbjct: 119 NLKVGTLVYARVTIANRDMEPEIECVDPATGKAEGFGELKGGLMVECSLQLCR----HPK 174
Query: 176 CPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
P+L L + FE A+GLNGRVW E + + I ++ K +DK ++
Sbjct: 175 HPLLPALAAHIPFETAIGLNGRVWFKTEQVGQTIALRRVIEAVDAGEIEMDKSSIDKAVK 234
Query: 236 RI 237
+
Sbjct: 235 QF 236
>gi|414881124|tpg|DAA58255.1| TPA: hypothetical protein ZEAMMB73_922165 [Zea mays]
Length = 80
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 72/79 (91%)
Query: 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNS 218
MF+TSTG+SRMLLSSPTCPVLE LGK+LSFEIAVGLNGRVWVNA + STV+LVSNAIM S
Sbjct: 1 MFDTSTGMSRMLLSSPTCPVLEVLGKKLSFEIAVGLNGRVWVNAPAASTVILVSNAIMRS 60
Query: 219 ESLSAVQQKIMVDKLLQRI 237
ESLS ++Q+ MV+ LL+R+
Sbjct: 61 ESLSGIKQRAMVENLLERL 79
>gi|341883788|gb|EGT39723.1| CBN-EXOS-3 protein [Caenorhabditis brenneri]
Length = 226
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 4/209 (1%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+ +PGDV+ + SS + G LR + VS + G R + K W+ KRY+P
Sbjct: 3 VYLPGDVIDEPSSSDSLITGYGINLRGQ-QKVST-QPGAFR-NDGGKVWLNVHSKRYIPQ 59
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+ IV D F +DI A + FEG T+RN P + G ++Y V P
Sbjct: 60 EGDRVIAIVTSKTGDFFRLDIGTAEFAIINFTNFEGATKRNRPNLKTGDIIYATVFDTTP 119
Query: 134 GMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
EL+C D +A G L GYMF+ S R L+ +P+C +L+ +GK FEI VG
Sbjct: 120 RTEAELTCVDDEKRARGMGQLNGGYMFKVSLNHCRRLI-NPSCKILQTIGKFFKFEITVG 178
Query: 194 LNGRVWVNAESPSTVVLVSNAIMNSESLS 222
+NGR+W+NA + ++ + + + SE ++
Sbjct: 179 MNGRIWINAPTTDDIIKIHDILNKSEFIT 207
>gi|405120233|gb|AFR95004.1| 3'-5'-exoribonuclease [Cryptococcus neoformans var. grubii H99]
Length = 247
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 27/243 (11%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVS---------------------VIKAGK 52
+++PG+ V S T++++ LG G+ Q ++ ++ +GK
Sbjct: 4 LILPGETVPIPS--TSKSVMLGPGISQSTPTLQSSSSTASGPSSAQGYIATRLGMLNSGK 61
Query: 53 LRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR 112
+ + K W+E + KRY+P +D VLGI++ AD + VD+ +A L LAFEG T+
Sbjct: 62 GK-ERSQKLWIEGNSKRYIPAQKDIVLGIIIARHADGYRVDLGSSQMAQLDALAFEGATK 120
Query: 113 RNIPKFEIGSLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLL 171
R+ P ++G+L++ RV+ A+ M PEL C D +GK+ FG LK G M + L R LL
Sbjct: 121 RSKPNLKVGTLVFARVMSASRDMEPELECFDPNTGKSDGFGELKGGVMVNATLQLCRRLL 180
Query: 172 SSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN-SESLSAVQQKIMV 230
VL + FEIA+GLNGRVW+ AE+ + + I + + + V++K +
Sbjct: 181 DRNHI-VLPTIASVFPFEIAIGLNGRVWMKAETVGETLAMKRLIESVDDHIIPVEEKAIK 239
Query: 231 DKL 233
+KL
Sbjct: 240 EKL 242
>gi|58266170|ref|XP_570241.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110996|ref|XP_775962.1| hypothetical protein CNBD3690 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258628|gb|EAL21315.1| hypothetical protein CNBD3690 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226474|gb|AAW42934.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 247
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
Query: 45 VSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV 104
+ ++ +GK + + K W+E + KRY+P +D VLGI++ AD + VD+ +A L
Sbjct: 54 LGMLHSGKGK-ERSQKLWIEGNSKRYIPAQKDIVLGIIIARHADGYRVDLGSSQMAQLDA 112
Query: 105 LAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETS 163
LAFEG T+R+ P ++G+L++ RV+ A+ M PEL C D +GK+ FG LK G M +
Sbjct: 113 LAFEGATKRSKPNLKVGTLVFARVMSASRDMEPELECFDPNTGKSDGFGELKGGVMVNAT 172
Query: 164 TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN-SESLS 222
L R LL VL + FEIA+GLNGRVW+ AE+ + + I + + +
Sbjct: 173 LQLCRRLLDRNHI-VLPTIASIFPFEIAIGLNGRVWMKAETVGETLAMKRLIESVDDHII 231
Query: 223 AVQQKIMVDKL 233
V++K + +KL
Sbjct: 232 PVEEKAIKEKL 242
>gi|341883776|gb|EGT39711.1| hypothetical protein CAEBREN_17988 [Caenorhabditis brenneri]
Length = 226
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 4/209 (1%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+ +PGDV+ + SS + G LR + VS + G R + K W+ KRY+P
Sbjct: 3 VYLPGDVIDEPSSSDSLITGYGINLRGQ-QKVST-QPGAFR-NDGGKVWLNVHSKRYIPQ 59
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+ IV D F +DI A + FEG T+RN P + G ++Y V P
Sbjct: 60 EGDRVIAIVTSKTGDFFRLDIGTAEFAIINFTNFEGATKRNRPNLKTGDIIYATVFDTTP 119
Query: 134 GMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
EL+C D +A G L GYMF+ S R L+ +P+C +L+ GK FEI VG
Sbjct: 120 RTEAELTCVDDEKRARGMGQLNGGYMFKVSLNHCRRLI-NPSCKILQTTGKFFKFEITVG 178
Query: 194 LNGRVWVNAESPSTVVLVSNAIMNSESLS 222
+NGR+W+NA + ++ + + + SE ++
Sbjct: 179 MNGRIWINAPTTDDIIKIHDILNKSEFIT 207
>gi|346970181|gb|EGY13633.1| exosome complex exonuclease RRP40 [Verticillium dahliae VdLs.17]
Length = 245
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 14/239 (5%)
Query: 11 VDKIVVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRF-SKPNKYWVESS 66
V V+PGD + + S ++LG GLR + AG L +K N WV+ S
Sbjct: 4 VGPFVLPGDDIDPSLIPSHPKLPLRLGPGLRHVPPRDIKPTIAGNLAIDAKKNSIWVDQS 63
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIA-FLPVLAFEGGTRRNIPKFEIGSLLY 125
+ RYVP V D V+G V + F V + + A LP +FE +++N P+ G+L+Y
Sbjct: 64 RGRYVPSVGDLVIGTVQRSAQEAFLVHLADYSAAVLLPQFSFELASKKNRPQLPSGALVY 123
Query: 126 VRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VL 179
RV A M+ EL C + S GKA G L G +F S G++R LL + VL
Sbjct: 124 ARVASAEKHMDAELECVNPSTGKADGLGPLTGGMLFTISLGMARRLLMPRSAEEGKVVVL 183
Query: 180 EELGK-QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQ 235
+ELG +FE AVG NGR+WVN+ES T++ V A+ ++ SL+ +Q+ +V KL++
Sbjct: 184 DELGSLGAAFETAVGRNGRLWVNSESVKTIIAVGRAVQQTDEGSLTVDEQQKLVRKLIK 242
>gi|219119212|ref|XP_002180371.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407844|gb|EEC47779.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 240
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 33 KLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQKRYVPCVEDTVLGIVVD------C 85
KLG GLR E + V R ++ Y+V +RY P +ED V+GIV D
Sbjct: 1 KLGTGLRYEESTRQVFATAAGRLHNFHRVYYVLQDLQRYRPALEDRVVGIVEDRVGSDGA 60
Query: 86 KADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV--VKANPGMNPELSCT- 142
D + V++ A L L+FEG ++RN P + G LLY RV + + ++PELSC
Sbjct: 61 GGDIYRVNLGAAHPALLSSLSFEGASKRNKPHLQPGQLLYARVAALHTSGALDPELSCVL 120
Query: 143 ----------DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK-QLSFEIA 191
D +G LK G STGL+R LL P VL EL K +LSFE+A
Sbjct: 121 GPHDQGVPRRDWMTNEGCYGELKGGKTCRVSTGLARELLQ-PDNVVLAELSKAKLSFEVA 179
Query: 192 VGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
VG+NG +W+++ SP +L+ NAI NS L+ Q + MV L+
Sbjct: 180 VGVNGFLWIHSHSPEYTILIQNAIQNSAVLTEEQVRGMVRSLV 222
>gi|302422376|ref|XP_003009018.1| exosome complex exonuclease RRP40 [Verticillium albo-atrum
VaMs.102]
gi|261352164|gb|EEY14592.1| exosome complex exonuclease RRP40 [Verticillium albo-atrum
VaMs.102]
Length = 245
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
Query: 11 VDKIVVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRF-SKPNKYWVESS 66
V V+PGD + + S ++LG GLR + AG L +K N WVE S
Sbjct: 4 VGPFVLPGDDIDPSLVPSHPKLPLRLGPGLRHVPPRDIKPTIAGNLAIDAKKNSIWVEQS 63
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+ RYVP V D V+G V + F V + LP +FE +++N P+ G+L+Y
Sbjct: 64 RGRYVPSVGDLVIGTVQRSAQEAFLVHLADYSATVLLPQFSFELASKKNRPQLPSGALVY 123
Query: 126 VRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VL 179
RV A M+ EL C + S GKA G L G +F S G++R LL + VL
Sbjct: 124 ARVASAEKHMDAELECVNPSTGKADGLGPLTGGMLFNISLGMARRLLMPRSAEEGKVVVL 183
Query: 180 EELGK-QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQ 235
+ELG +FE AVG NGR+WVN+ES T++ V A+ ++ SL+ +Q+ +V KL++
Sbjct: 184 DELGSLGAAFETAVGRNGRLWVNSESVKTIIAVGRAVQQTDEGSLTVDEQQKLVRKLIK 242
>gi|346325578|gb|EGX95175.1| exosome complex exonuclease RRP40 [Cordyceps militaris CM01]
Length = 245
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQECDSVSVIK--AGKLRFSKP-NKYWVESSQK 68
IV+PGD + D + + + ++LG GLR + + +++ AG+L +P N VE+S
Sbjct: 6 IVLPGDAIDDAQIPTHPKKPLRLGPGLRHDPFTNAILPTIAGQLVSDRPKNALRVETSTG 65
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RY+P + V+G V AD ++V + A LP LAFEG T++ P+ G+L+Y R
Sbjct: 66 RYLPRAGELVIGTVQKSAADVYYVQLSDHAAPATLPQLAFEGATKKTRPQLAPGALVYAR 125
Query: 128 VVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLL-----SSPTCPVLEE 181
+ A+ M+ EL C AS GKA G L G +F S G++R L+ ++ VLE
Sbjct: 126 ITLADRHMDAELECVSASTGKADGLGPLTGGMLFAVSLGMARRLMMPGGAAASGVVVLEG 185
Query: 182 LGK-QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQRI 237
L FE A G NG+VWV+A S TV+ V A+ ++ L +Q+ +V KLL+ +
Sbjct: 186 LAAGGWQFETATGRNGKVWVDAGSARTVMAVGRAVQETDEKGLGVEEQQKLVRKLLKEM 244
>gi|361125492|gb|EHK97532.1| putative Exosome complex component RRP40 [Glarea lozoyensis 74030]
Length = 235
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 122/233 (52%), Gaps = 22/233 (9%)
Query: 14 IVVPGDVV--LDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFSK-PNKYWVESSQKR 69
V+PG ++ DL S Q +KLG GLR +++ I AG+L K N WVES+ R
Sbjct: 8 FVLPGQILDSKDLPSHPTQPLKLGPGLRHIPPSTITTIVAGQLYTDKRKNAVWVESNGGR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y P + D V+ + AD ++ I T A LP L+FEG T++ P+ G+L+Y RV
Sbjct: 68 YTPTIGDLVIATIQKSSADVYYASISDYTPNATLPQLSFEGATKKTRPQLAFGALVYARV 127
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSP----TCPVLEELG 183
AN M+PEL C +S GK+ G L T R++L P +LEELG
Sbjct: 128 TLANKHMDPELECVSSSTGKSEGLGPL---------TMSRRLMLPKPADQGALVLLEELG 178
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKL 233
Q +SFE AVG NGRVWV + S + + A+ ++ LS Q+ + K+
Sbjct: 179 SQGISFETAVGRNGRVWVKSNSVKATLAIGRAVQETDEKVLSVEGQRKLAKKV 231
>gi|321257555|ref|XP_003193629.1| hypothetical protein CGB_D5210W [Cryptococcus gattii WM276]
gi|317460099|gb|ADV21842.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 247
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
Query: 45 VSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV 104
+ ++ +GK + K K W+E + KRY+P +D VLGI++ AD + VD+ +A L
Sbjct: 54 LGMLHSGKGK-EKSQKLWIEGNSKRYIPAQKDIVLGIIIARHADGYRVDLGCSQMAQLDA 112
Query: 105 LAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETS 163
LAFEG T+R+ P ++G+L++ RV+ A+ M PEL C D +GK+ FG LK G M +
Sbjct: 113 LAFEGATKRSKPNLKVGTLVFARVMSASRDMEPELECFDPNTGKSDGFGELKGGVMVNVT 172
Query: 164 TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN-SESLS 222
L R LL VL + FEIA+GLNGRVW+ AE+ + + I + ++ +
Sbjct: 173 LQLCRRLLDRNHI-VLPTIASVFPFEIAIGLNGRVWMKAETVGETLAMKRLIESVNDHIV 231
Query: 223 AVQQKIMVDKL 233
V++K + KL
Sbjct: 232 PVEEKAVKRKL 242
>gi|171684817|ref|XP_001907350.1| hypothetical protein [Podospora anserina S mat+]
gi|170942369|emb|CAP68021.1| unnamed protein product [Podospora anserina S mat+]
Length = 246
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 130/239 (54%), Gaps = 14/239 (5%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+V+PGD + + S T++ ++LG GLR D V V+ + + N WVE + R
Sbjct: 8 LVLPGDPISPDLIPSSTSKPLRLGPGLRHVPPSDIVPVVAGQLITNHQKNSMWVEYNSNR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P D ++ ++ D +F I T A LP L+FE T++ P+ G+L+Y RV
Sbjct: 68 YIPAPGDLIIAQILRSGPDLYFTSISPYTPPATLPHLSFESATKKTRPQLAPGALVYARV 127
Query: 129 VKANPGMNPELSC-TDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPT-----CPVLEEL 182
V AN M+PE+ C + ++GK+ G LK G +F+ S +R LL + + VLE L
Sbjct: 128 VLANKHMDPEIECVSQSTGKSDGLGELKGGMVFDVSLQFARRLLMAKSKEEGKVEVLELL 187
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQRIK 238
G + L+FEIAVG NG+VWV E +V+V + ++ L Q+ +V +L + +K
Sbjct: 188 GGEGLAFEIAVGRNGKVWVGGEDVKAIVVVGRTLRETDEGGLGVEAQRKLVRRLAKGMK 246
>gi|395328697|gb|EJF61088.1| exosome complex exonuclease RRP40 [Dichomitus squalens LYAD-421
SS1]
Length = 230
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 12/208 (5%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECDS-----VSVIKAGKLRFS-KPNKYWVESSQK 68
V+PG++V + +KLG GL ++ V +AG++ + +++W+E + +
Sbjct: 4 VLPGELV----PAQHVNLKLGPGLLRQSSLNGQPLVISTRAGEVHHTTNRSRWWIEGNSR 59
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP +++V+G+VV +N+ VDI A L LAFEG T+RN P ++GSLL+ RV
Sbjct: 60 RYVPAPQESVVGVVVGRSGENWKVDIGSSHTATLDGLAFEGATKRNRPNLKVGSLLFARV 119
Query: 129 VKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
A+ M PEL C DA + AE G LK G++ + S + RMLL P + LG +
Sbjct: 120 SLAHKDMEPELECFDAQTRKAEGHGELKGGFLVQCSLKMCRMLL-DPNHFLFPLLGSRFP 178
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAI 215
E A+G+NGRVW++A+ P V+ ++ I
Sbjct: 179 LESAIGMNGRVWISAKDPRQVIAIARCI 206
>gi|440637211|gb|ELR07130.1| hypothetical protein GMDG_02399 [Geomyces destructans 20631-21]
Length = 243
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 12/218 (5%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKL-RFSKPNKYWVESSQKR 69
V+PGD + L S IKLG GLR ++++ + AG+L ++ N WVE + R
Sbjct: 6 FVLPGDHIDSELLPSHPTLPIKLGPGLRHIPPNTITPVVAGQLCTDTRKNSIWVEFNGGR 65
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P V D V+ V D ++ I T A LP L+FEG T++N P GSL+Y RV
Sbjct: 66 YIPTVGDLVIATVHHSSVDVYYASITDYTSYASLPQLSFEGATKKNRPVLVQGSLIYARV 125
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLS-RMLLSSPT----CPVLEEL 182
AN M+PEL C +S GK+ GLL G +F S ++ R+++ PT VLEEL
Sbjct: 126 SLANKHMDPELECVSSSTGKSDGLGLLTGGMLFTVSLVMARRLMMPKPTEQGKLVVLEEL 185
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
G ++FEIAVG NG+VWVN+++P T + V AI +++
Sbjct: 186 GDAGVAFEIAVGRNGKVWVNSKNPKTTLAVGKAIQDTD 223
>gi|350534412|ref|NP_001232949.1| uncharacterized protein LOC100575257 [Acyrthosiphon pisum]
gi|239799156|dbj|BAH70511.1| ACYPI56194 [Acyrthosiphon pisum]
Length = 236
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 119/214 (55%), Gaps = 6/214 (2%)
Query: 12 DKIVVPGD----VVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQ 67
+ +V+PG+ +VL + +G GL+ + + V G LR +W+E +
Sbjct: 7 NNVVLPGNDVSHIVLKGDNCKRSEKTIGPGLKSVDNKIIVCNGGVLRCKDDKYFWIEYFK 66
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
K+Y+P +D V+GIV ++ + VDI +A LP LAF T++N P ++G+++ +
Sbjct: 67 KKYIPAKDDVVVGIVAAKTSEMYKVDIGASELATLPYLAFTNATKKNRPDIKVGNVVAAK 126
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
+ A P M E+SC + + FG L++G++ S + L S + +L +LG+ +
Sbjct: 127 IKMATPFMESEISCVEYANSII-FGQLENGFLINVSLNYALRLRKSNS-KLLYQLGQMVP 184
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESL 221
+EI +G NG++W+++ S T + + NAI+N+E L
Sbjct: 185 YEIVIGANGKIWIHSASIRTTIAIGNAILNAEHL 218
>gi|343428944|emb|CBQ72489.1| related to RRP40-protein involved in ribosomal RNA processing,
component of the exosome complex [Sporisorium reilianum
SRZ2]
Length = 277
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 122/234 (52%), Gaps = 29/234 (12%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGL---RQECDSVSVIKAGKL----RFSKPNK------ 60
+V+PGDVV S ++ IKLG GL S++ I+ G L S +K
Sbjct: 3 VVLPGDVV---SVPSSSAIKLGPGLLPTPNASSSLTAIRPGALGQIGSSSTASKGKDAQT 59
Query: 61 -YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
WVE++ RYVP D+V+G + + A+++ V + A LP L+FEG T+R+ P
Sbjct: 60 ALWVETNTLRYVPAPGDSVIGQITNRGAESYTVTLFSAHAATLPALSFEGATKRHKPNLR 119
Query: 120 IGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLK----------DGYMFETSTGLSR 168
IG L+Y R+V A+ PEL+C + +GK+ FG LK +F S GL+R
Sbjct: 120 IGLLVYARIVGADRFTEPELTCVNPVTGKSDGFGDLKTTDERGERVGHAMLFVVSVGLAR 179
Query: 169 MLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLS 222
LL PT +L+++ FE AVG NG VWV A P V+ V + ++ LS
Sbjct: 180 SLL-RPTHALLKQVAAHFPFEAAVGANGAVWVRANEPRHVIAVGKVLDAADLLS 232
>gi|322701392|gb|EFY93142.1| hypothetical protein MAC_00925 [Metarhizium acridum CQMa 102]
Length = 245
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 127/236 (53%), Gaps = 14/236 (5%)
Query: 14 IVVPGDVVL-DL-SSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFSKP-NKYWVESSQKR 69
V+PGD + DL S + ++LG GLR + V AG+L +P N VE+S R
Sbjct: 7 FVLPGDHIPPDLVPSHPKKPLRLGPGLRHVPPNDVVPTLAGQLVTDRPKNAIRVETSHGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
YVP V + V+G + AD ++V + T LP L+FE T++ P G+L+Y RV
Sbjct: 67 YVPRVGELVIGTIHKSAADVYYVHLSDHTAPVLLPQLSFESATKKTRPVLAPGALVYARV 126
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VLEEL 182
AN M+ EL C +S GK+ G L G MF+ S G++R L+ + VLEEL
Sbjct: 127 TLANKHMDAELECVSSSTGKSDGLGPLTGGMMFDISLGMARRLMMPKSVQEGKIVVLEEL 186
Query: 183 GK-QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQ 235
G L F+ A G NGR WV++E+ TV+ V AI ++ L Q+ +V K+++
Sbjct: 187 GALGLQFDTATGRNGRFWVDSENTKTVLAVGRAIQETDERRLGVEDQRKLVRKIIK 242
>gi|164660510|ref|XP_001731378.1| hypothetical protein MGL_1561 [Malassezia globosa CBS 7966]
gi|159105278|gb|EDP44164.1| hypothetical protein MGL_1561 [Malassezia globosa CBS 7966]
Length = 312
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 116/211 (54%), Gaps = 26/211 (12%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECD------SVSVIKAGKL---------RFSKP 58
+V+PGDV+ + + ++Q IKLG G+ D S++ I G L R S+P
Sbjct: 3 VVLPGDVIANAAHASDQ-IKLGPGVLPTPDVPDTPASLTSIHTGALGHVVTKQRRRESRP 61
Query: 59 ---NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNI 115
+ ++VES+Q+RYVP V D V+ V + +++ + + + LPVLAFEG TRRN
Sbjct: 62 ATMHGWYVESAQRRYVPSVGDRVIAQVTNRGMESYTLTLFSAHPSTLPVLAFEGATRRNR 121
Query: 116 PKFEIGSLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKD-----GYMFETSTGLSRM 169
P +IG+L+Y RVV A P PELSC D KA G LK +++ S L++
Sbjct: 122 PNLQIGALVYARVVNAEPWSEPELSCIDPIHNKADGMGELKATEPDVAMVWQVSLSLAQS 181
Query: 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
+L P +L + K +FE A+G NG VWV
Sbjct: 182 ML-RPQHTLLLNVSKHFAFEAAIGKNGLVWV 211
>gi|392580535|gb|EIW73662.1| hypothetical protein TREMEDRAFT_67481 [Tremella mesenterica DSM
1558]
Length = 239
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
+ WVE+ KRY+P +D ++G ++ A+ + VDI +A L LAFE T+R+ P +
Sbjct: 60 RIWVETRSKRYIPAQKDLIIGTIIARHAEGYRVDIGSAQMAQLDALAFESATKRSKPNLK 119
Query: 120 IGSLLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
IG+L+Y RV AN M+PE+ C D S GK+ FG LK+G M E S L R LL P+
Sbjct: 120 IGTLVYGRVTLANRDMDPEIECFDPSTGKSEGFGELKEGLMVECSLQLCRQLLKP-KYPL 178
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L L Q+ FEIA+GLNGR+W+ A S + + I E ++ + K+ D++++ +K
Sbjct: 179 LLALASQVKFEIAIGLNGRIWLKAPSVGETIALKRVI---EGVNEGKVKVEKDEIVKLVK 235
>gi|336369949|gb|EGN98290.1| hypothetical protein SERLA73DRAFT_91563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382710|gb|EGO23860.1| hypothetical protein SERLADRAFT_450152 [Serpula lacrymans var.
lacrymans S7.9]
Length = 230
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 119/209 (56%), Gaps = 12/209 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGL-----RQECDSVSVIKAGKLRFS-KPNKYWVESSQ 67
IV+PG+ + + +KLG GL Q+ V +AG L S +K+WVES+
Sbjct: 3 IVLPGERI----PAQHVNLKLGPGLLQIPSTQKESPVIATRAGNLEHSVNRSKWWVESNA 58
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
+RYVP +++V+G+VV + + VDI A L LAFEG T+RN P ++GSL+Y R
Sbjct: 59 RRYVPAAQESVVGVVVGRSGEGWRVDIGSAHSASLDGLAFEGATKRNRPNLKVGSLVYAR 118
Query: 128 VVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V A+ M PEL C DA + +E FG LK G++ S +SR+LL P +L LG +
Sbjct: 119 VSLAHKDMEPELECFDAQSRKSEGFGELKGGFVVSCSLRMSRILL-DPKHFLLPLLGARF 177
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
E AVG+NG+VW++ + P + V I
Sbjct: 178 PLEAAVGVNGKVWISTKDPRQTIAVLRCI 206
>gi|358393401|gb|EHK42802.1| hypothetical protein TRIATDRAFT_285511 [Trichoderma atroviride IMI
206040]
Length = 245
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 131/237 (55%), Gaps = 14/237 (5%)
Query: 15 VVPGDVVLD--LSSMTNQTIKLGGGLRQECDS-VSVIKAGKLRFSK-PNKYWVESSQKRY 70
V+PGD + + S + ++LG GLR S + AG+L + N VE++ RY
Sbjct: 8 VLPGDHIDPSLIPSHPKKPVRLGPGLRHVPPSELLPTLAGQLVTDRLKNAIRVETASGRY 67
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
+P V + V+G V ++ +FV + T A LP L+FE T++ P G+L+Y RV
Sbjct: 68 IPRVGELVIGTVNKSASEVYFVSLSDYTAPALLPQLSFESATKKTRPILAPGALVYARVT 127
Query: 130 KANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VLEELG 183
AN M+ EL C AS GKA G L G +F S G++R+L+ VL+EL
Sbjct: 128 LANKHMDAELECVSASTGKADGLGPLAGGMLFAISLGMARLLMMPKKAQQGKVVVLDELA 187
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQRI 237
L FE A G NGR+WV++++ T+++V AI ++ SL+A +Q+ +V KL++ +
Sbjct: 188 DAGLQFETATGRNGRLWVDSDNTKTIIVVGRAIQETDEKSLAADEQRKLVKKLIKEL 244
>gi|406602832|emb|CCH45608.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 232
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 118/213 (55%), Gaps = 5/213 (2%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFSKPNKYWVESSQKRY 70
++++PGD + S+ N + +G G+ + S+I +G L + N ++ES+ +RY
Sbjct: 3 QLIIPGDDLPSHSTDQNSQLIIGPGIYVNPINKSIIPINSGLLN-HQANSLYIESNSRRY 61
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
+P D V+G V+ D F V + + + L +AF T++N P + G+L+Y RV
Sbjct: 62 IPQQNDFVIGKVIGSFGDVFKVSLSNFSNSVSLSSMAFPNATKKNRPNIKNGNLVYARVS 121
Query: 130 KANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN ++ EL C D +GK FGLL+ GY+ E S +R LL +P C +L EL K+ F
Sbjct: 122 NANKEIDTELECIDPTTGKDGGFGLLEGGYLLEVSLSFARFLLFNPQCQILNELVKKCKF 181
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESL 221
EIA+G NG +W+ ++ + +S + ++ L
Sbjct: 182 EIAIGCNGLIWIKSDELKYTLALSKCLEKAQFL 214
>gi|408388586|gb|EKJ68267.1| hypothetical protein FPSE_11570 [Fusarium pseudograminearum CS3096]
Length = 277
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 14/231 (6%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFSK-PNKYWVESSQKR 69
V+PGD + + S + ++LG GLR + + AG+L + N VE+++ R
Sbjct: 41 FVLPGDSIDPSLIPSHPKKPLRLGPGLRHVPPNGIIPTLAGQLVTDRQKNAIRVENARGR 100
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y P V + V+G + AD FFV + T A LP L+FEG T++ P+ G+L+Y RV
Sbjct: 101 YTPRVGELVIGTIQRSAADFFFVTLSDYTAPAQLPQLSFEGATKKTRPQLAAGALVYARV 160
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VLEEL 182
AN M+PE+ C AS GK+ G L G ++ S G++R L+ + VLEEL
Sbjct: 161 ALANRHMDPEIECVSASTGKSEGLGPLAGGMLYNVSLGMARRLMMPKSVQEGRVVVLEEL 220
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMV 230
G L FE A G NG+ WV++E+ TV+ V A+ ++ +L QK ++
Sbjct: 221 GNAGLQFETATGRNGKFWVDSENVKTVIAVGRAVQETDEKNLDVEDQKKLI 271
>gi|340992584|gb|EGS23139.1| hypothetical protein CTHT_0008000 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 256
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 24/249 (9%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V+PG+ + + + ++LG GLR D + + + N WVE + +R
Sbjct: 8 FVLPGETIDPSLVPTHPKHPLRLGPGLRHVPPSDIIPTVAGQLITNLNKNSMWVEYNSQR 67
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
YVP D VL V+ D++ I T A LP LAFE T++ P+ + G L+Y RV
Sbjct: 68 YVPTQNDLVLAQVLRSTQDSYLCLITPHTPPATLPHLAFESATKKTRPQLQPGQLVYARV 127
Query: 129 VKANPGMNPELSCTDAS-GKAAEFG-LLKDGYMFETSTGLSRMLLSSPTC---------- 176
AN M+PEL C + S GKA G + G +FE S G +R LL + +
Sbjct: 128 SLANRHMDPELECVNPSTGKADGLGPITGPGCVFEVSLGFARRLLMAKSREEGKVGVLEM 187
Query: 177 -----PVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIM 229
P + E G L+FE AVG NGRVWV +E TV++V A+ ++ +L+ Q+ +
Sbjct: 188 LAGEDPSIGEAGAGLAFETAVGRNGRVWVGSEDVKTVIIVGRALQETDRGNLTIEGQRKL 247
Query: 230 VDKLLQRIK 238
V +LL+ ++
Sbjct: 248 VRRLLREMR 256
>gi|358385077|gb|EHK22674.1| hypothetical protein TRIVIDRAFT_170223 [Trichoderma virens Gv29-8]
Length = 245
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 16/238 (6%)
Query: 15 VVPGDVVLDLS---SMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V+PGD + D S S + ++LG GLR D + + + + N VE+S R
Sbjct: 8 VLPGDRI-DASLIPSHAKKPLRLGPGLRHVPPSDILPTLAGQLVTDRQKNAIRVETSNGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P V + V+G + ++ +FV++ T A LP L+FE T++ P G+L+Y RV
Sbjct: 67 YIPRVGELVIGTINKSASEVYFVNLSDYTAPALLPQLSFESATKKTRPILAPGALVYARV 126
Query: 129 VKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VLEEL 182
AN M+ EL C AS GKA G L G +F S G++R+L+ VL+EL
Sbjct: 127 TLANKHMDAELECVSASTGKADGLGPLVGGMLFTISLGMARLLMMPKKAQHGKLVVLDEL 186
Query: 183 GKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQRI 237
+ FE A G NGR+WV+++S ++ V AI ++ SL+A +Q+ +V +L++ +
Sbjct: 187 ADAGVQFETATGRNGRLWVDSDSTKAIIAVGRAIQETDEKSLNADEQRKLVRRLIKEL 244
>gi|324520793|gb|ADY47712.1| Exosome complex exonuclease RRP40 [Ascaris suum]
Length = 232
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 12/232 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIK-LGGGLRQECDS-----VSVIKAGKLRFSKPNKYWVESSQ 67
I +PGD++ ++ S +Q K +G GL +CDS + V++ G L+ S +K WV
Sbjct: 4 ICLPGDLI-EIDSKQDQEKKVIGRGL--QCDSGDLTKIRVVQPGLLK-SCGSKRWVAVYS 59
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RY+P D VLG+V + D VDI IA + L FEG T+RN P + G L+Y
Sbjct: 60 NRYIPQEGDKVLGVVKASRGDLIKVDIGASDIASISFLGFEGATKRNRPVLKTGDLIYAS 119
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V+ A + L+C D G+A GLL G++F+TS L+R LLS + +L +GK++
Sbjct: 120 VILAMRHLEATLTCVDNEGRAQGLGLLPSGGFLFKTSLNLARRLLSPSS-RLLSLIGKEI 178
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
FEI G+NGR+W+ A + V + I+ S+S+ +D+ ++ +K
Sbjct: 179 KFEITCGMNGRIWIKASKANEVAAIYRMIVGSQSIPESDIPTFIDEHMRILK 230
>gi|17507825|ref|NP_492751.1| Protein EXOS-3 [Caenorhabditis elegans]
gi|3877902|emb|CAB01875.1| Protein EXOS-3 [Caenorhabditis elegans]
Length = 226
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 4/191 (2%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+ +PGDV+ + SS + I G +R + + + G + K W+ KRY+P
Sbjct: 3 VYLPGDVINEPSSSDSSIIGYGISVRGQTRIAT--QPGAFH-NDDGKVWLNVHSKRYIPQ 59
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
D V+ IV D F +DI A + FEG T+RN P + G ++Y V P
Sbjct: 60 EGDRVIAIVTSKTGDFFRLDIGTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFDTTP 119
Query: 134 GMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
EL+C D +A G L G+MF+ S R L+ +P+C +L+ +GK FEI VG
Sbjct: 120 RTEAELTCVDDEKRARGMGQLNGGFMFKVSLNHCRRLI-NPSCKILQTVGKFFKFEITVG 178
Query: 194 LNGRVWVNAES 204
+NGR+W++A +
Sbjct: 179 MNGRIWISAST 189
>gi|406858917|gb|EKD11997.1| exosome complex exonuclease RRP40 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 243
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 18/236 (7%)
Query: 14 IVVPGDVVLDLSSMTNQT---IKLGGGLRQ-ECDSVSVIKAGKL-RFSKPNKYWVESSQK 68
V+PG LD S+ + +KLG GLR +++ AG L ++ N WVE +
Sbjct: 6 FVLPGQH-LDPESLPSHPKLPLKLGPGLRLLPPSTITPTVAGHLCTDARKNAVWVEFNGG 64
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRG--PTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+P V D V+ V D +FV + P A LP L+FEG T++ P+ GSL+Y
Sbjct: 65 RYIPTVGDLVIATVQKHSVDVYFVSLSDYMPN-ASLPQLSFEGATKKTRPQLGYGSLVYA 123
Query: 127 RVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLS-RMLLSSP----TCPVLE 180
RV AN M+PEL C +S GK+ G L G +F S G++ R++LS P VLE
Sbjct: 124 RVTLANKHMDPELECVSSSTGKSEGLGPLTGGMLFAISLGMARRLMLSKPGEQGNLVVLE 183
Query: 181 ELGKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKL 233
E+G + FE+AVG NG++WV+++S + + A+ ++ L+ QK + KL
Sbjct: 184 EIGGAGVPFEVAVGRNGKLWVDSKSVKATLAIGKAVQETDEKGLNVEAQKKLARKL 239
>gi|157817749|ref|NP_001101406.1| exosome complex exonuclease RRP40 [Rattus norvegicus]
gi|149045813|gb|EDL98813.1| exosome component 3 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 215
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 13/170 (7%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK--------- 60
D + PG+ L L++ +++ G GLR+ D + V K G+LR +P+
Sbjct: 45 DGLGGPGEQPLRLNAGARPRLRIVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGGGGGG 104
Query: 61 -YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
YWV+S QKRYVP D V+GIVV D F VD+ G A L LAFEG T+RN P +
Sbjct: 105 VYWVDSQQKRYVPVKGDHVIGIVVAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQ 164
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSR 168
+G L+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R
Sbjct: 165 VGDLIYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIR 214
>gi|169595240|ref|XP_001791044.1| hypothetical protein SNOG_00354 [Phaeosphaeria nodorum SN15]
gi|111070729|gb|EAT91849.1| hypothetical protein SNOG_00354 [Phaeosphaeria nodorum SN15]
Length = 238
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 11/235 (4%)
Query: 14 IVVPGDVV----LDLSSMTNQTIKLGGGLRQECDS--VSVIKAGKLRFSKPNKYWVESSQ 67
+V+PGD + L + +T+KLG GLR S V+ + + +K N VE++
Sbjct: 4 LVLPGDEIPPHALPTGTGKRKTLKLGPGLRHIPPSTVVTTVAGALVTDNKKNAASVETNS 63
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+P D V+ V + ++F + T A LP LAFEG T++ P+ SL+Y
Sbjct: 64 GRYIPYPNDLVIATVNNSTGESFNCLLSPHTPFAALPHLAFEGATKKTRPQLPPNSLIYT 123
Query: 127 RVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLS-SPTCPVLEELGK 184
R+V PEL+C D A+GK+ GLLK G +F S G++R LL+ +LEELGK
Sbjct: 124 RIVSCPRDSAPELTCVDPATGKSEGLGLLKGGMVFPISLGMARRLLAPKEELVLLEELGK 183
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQRI 237
++ FEI VG NG V V+A S + V A+ ++ E++ Q+ MV ++L++I
Sbjct: 184 KIGFEITVGRNGVVHVDAGSVGRTLAVGKALQRVDEEAVGEAGQRKMVGEILKKI 238
>gi|260947378|ref|XP_002617986.1| hypothetical protein CLUG_01445 [Clavispora lusitaniae ATCC 42720]
gi|238847858|gb|EEQ37322.1| hypothetical protein CLUG_01445 [Clavispora lusitaniae ATCC 42720]
Length = 288
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 120/209 (57%), Gaps = 16/209 (7%)
Query: 4 KPSTANLVDKIVVPGDVVLDLSSMTNQT-IKLGGGLRQECDSVSVI--KAGKLRFSKPNK 60
KPS+ ++ I++PGD + S + Q I +G G+ + S +I +AG L+ + +K
Sbjct: 13 KPSSLHM--SIILPGDSLA--SEVEGQAEITIGPGIYKYPKSHQIIPSQAGILKSTSASK 68
Query: 61 ------YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRR 113
++ES+ KRY+P V D V+G + D F V ++ + L ++AF T++
Sbjct: 69 KSNDKLLYIESNSKRYIPQVNDLVIGYITGVYGDFFKVSLQNHSAPVQLSMMAFPNATKK 128
Query: 114 NIPKFEIGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLL 171
N P ++ +Y RV +A P ++ E+ C D +GK FGLL + G++F+ + +R LL
Sbjct: 129 NRPNLKVDQAVYARVSEALPDIDTEIECFDPETGKEGGFGLLDESGFIFDVNMNFARELL 188
Query: 172 SSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
+ +C LE+L + SFEIA+G+NGRVW+
Sbjct: 189 FNKSCIFLEKLASRCSFEIAIGINGRVWI 217
>gi|254566955|ref|XP_002490588.1| exosome complex component RRP40 [Komagataella pastoris GS115]
gi|238030384|emb|CAY68307.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350975|emb|CCA37375.1| exosome complex component RRP40 [Komagataella pastoris CBS 7435]
Length = 232
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 11/220 (5%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQE--CDSVSVIKAGKLRFS-KPNK--YWVE 64
+ + ++VPGD LD+ S + I LG G + D + AG L S K NK Y ++
Sbjct: 1 MTESLIVPGDR-LDIKS---ENIILGPGFYVDPKTDEILPTNAGILEVSQKQNKTVYVID 56
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSL 123
S K Y+P D V+GI+ + + V + T A + V AF +++N P ++G +
Sbjct: 57 SKSKTYIPKTNDFVIGIITGTFGELYKVGLSEFTQAAQMSVYAFPNASKKNRPHLKVGDV 116
Query: 124 LYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+Y RV+ A + EL C D +GK FG L+DGY+F + +R LL + +L EL
Sbjct: 117 IYARVLSAERDIEVELECIDPTTGKEGGFGQLEDGYLFTVNLAYARYLLFNENAEILTEL 176
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLS 222
K+ FE+AVG NGR+W+ +E+ T + I S++ S
Sbjct: 177 VKKCKFELAVGCNGRIWIKSETVKTTITCVKIIEESQNWS 216
>gi|367042374|ref|XP_003651567.1| hypothetical protein THITE_2046078 [Thielavia terrestris NRRL 8126]
gi|346998829|gb|AEO65231.1| hypothetical protein THITE_2046078 [Thielavia terrestris NRRL 8126]
Length = 260
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 131/256 (51%), Gaps = 33/256 (12%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKP--NKYWVESSQ 67
V+PG+ + + + ++LG GLR D V + AG+L + P N WVE +
Sbjct: 7 FVLPGETIDPALVPTHKKHPLRLGPGLRHIPPSDIVPTV-AGQL-ITNPLKNSMWVEFNS 64
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
+RY+P D VL V + + + T A LP LAFEG T++ P+ G L+Y
Sbjct: 65 QRYIPTTGDLVLATVTRNAPEAYLCSLSAYTPAATLPHLAFEGATKKTRPQLAPGQLVYA 124
Query: 127 RVVKANPGMNPELSC-TDASGKAAEFGLLK--DGYMFETSTGLSRMLLSSPT-----CPV 178
RV A+ M+PEL C + A+G+A G + +G +F+ S G +R LL + + V
Sbjct: 125 RVALAHRHMDPELECVSAATGRADGLGPIAAGNGCVFDVSLGFARRLLMARSREDGGVGV 184
Query: 179 LEELGKQ--------------LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLS 222
LE L Q L+FE AVG NG+VWV +ES TVVLV A+ ++ L
Sbjct: 185 LEMLAGQDPEVVVGGAGGGGGLAFETAVGRNGKVWVGSESAKTVVLVGRALQETDRARLG 244
Query: 223 AVQQKIMVDKLLQRIK 238
Q+ +V +LL+ ++
Sbjct: 245 LEGQRRLVKRLLREMR 260
>gi|148670454|gb|EDL02401.1| exosome component 3, isoform CRA_b [Mus musculus]
Length = 208
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-----YWV 63
VD + G+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV
Sbjct: 42 VDGLGGAGEQPLRLNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWV 101
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+S QKRYVP D V+GIV+ D F VD+ G A L LAFEG T+RN P ++G L
Sbjct: 102 DSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 161
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSR 168
+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R
Sbjct: 162 IYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIR 207
>gi|238581443|ref|XP_002389610.1| hypothetical protein MPER_11234 [Moniliophthora perniciosa FA553]
gi|215452066|gb|EEB90540.1| hypothetical protein MPER_11234 [Moniliophthora perniciosa FA553]
Length = 206
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 106/203 (52%), Gaps = 24/203 (11%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+V+PG+ V + +KLG GL Q +KP V+ +K YVP
Sbjct: 3 VVLPGEQV----HAQHVNLKLGPGLLQ---------------TKP---CVDFERKTYVPA 40
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
++ V+G++ + + + VDI A L LAFEG ++RN P ++G L+Y RV A+
Sbjct: 41 AQEPVIGVISQRQGEGYRVDIGSAHSANLDGLAFEGASKRNKPNLKVGCLVYARVSLAHK 100
Query: 134 GMNPELSCTDASGKAAE-FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
M PEL C DA AE FG LK G++ S + R LL S +L LG E+A+
Sbjct: 101 DMEPELECFDAQTHKAEGFGELKGGFLVRCSMRMCRQLLDSNHF-LLPLLGAMFPLEVAI 159
Query: 193 GLNGRVWVNAESPSTVVLVSNAI 215
GLNGRVWVN++ ++ + AI
Sbjct: 160 GLNGRVWVNSKEAKQIIAIVRAI 182
>gi|294917295|ref|XP_002778446.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
gi|239886839|gb|EER10241.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
Length = 254
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 21/243 (8%)
Query: 13 KIVVPGDVVLD----LSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQK 68
+ +PGD V +SS ++ G L ++C +V + + + +++++K
Sbjct: 14 HVYLPGDTVSIEAGVVSSCDPNSVGFGIRLDEDCPKAAVAGLLSVESAVSDIPCIDNTRK 73
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RY+P D VLG+VV A+ + VDI GPT A LP LAF G T+R+ P G L+Y
Sbjct: 74 RYIPRRGDMVLGVVVQRTAEYYRVDINGPTGTANLPTLAFNGATKRHKPNLSPGDLVYCH 133
Query: 128 VVKANPGMNPELSCTDAS------GKAAEFGLLKDGYMFETSTGLSRML-------LSSP 174
V A+ ++ ELSC D S K FG L + GL + L +
Sbjct: 134 VTVADRDLDVELSCVDPSTTRDWTHKDVYFGHLAP---VDGCCGLQATVPLWQAKSLQAT 190
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
V+ LG+ FE A+G+NGR W++A +P+ V+VS + S LS + M K+
Sbjct: 191 NSTVMASLGRHFVFESAIGVNGRCWISAAAPNVAVMVSRILSGSHKLSQAHMEAMCSKMA 250
Query: 235 QRI 237
+++
Sbjct: 251 KQL 253
>gi|294878233|ref|XP_002768324.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
gi|239870572|gb|EER01042.1| Exosome complex exonuclease RRP40, putative [Perkinsus marinus ATCC
50983]
Length = 255
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 15/240 (6%)
Query: 13 KIVVPGDVVLD----LSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQK 68
+ +PGD V +SS ++ G L ++C +V + + + ++++K
Sbjct: 15 HVYLPGDTVPIEAGVVSSCDPNSVGFGIRLDEDCPKAAVAGLLSVESAVSDIPCFDNTRK 74
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RY+P D VLG+VV A+ + VDI GPT A LP LAF G T+R+ P G L+Y
Sbjct: 75 RYIPRRGDMVLGVVVQRTAEFYRVDINGPTGTANLPTLAFNGATKRHKPNLSPGDLVYCH 134
Query: 128 VVKANPGMNPELSCTDAS------GKAAEFGLLK--DGY--MFETSTGLSRMLLSSPTCP 177
V A+ ++ ELSC D S K FG L DG + T L +
Sbjct: 135 VTVADRDLDVELSCVDPSTTRDWTHKDVYFGHLAPVDGCCGLQATVPLWQAKSLQATGST 194
Query: 178 VLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
V+ LG+ FE A+GLNGR W++A +P+ V+VS + S LS + M K+ +++
Sbjct: 195 VMASLGRHFVFESAIGLNGRCWISAAAPNVAVMVSRILSGSHKLSQAHMEAMCSKMAKQL 254
>gi|400600679|gb|EJP68347.1| exosome complex exonuclease RRP40 [Beauveria bassiana ARSEF 2860]
Length = 247
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 17/241 (7%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQE--CDSVSVIKAGKL-RFSKPNKYWVESSQK 68
IV+PGD + D + + + ++LG GLR + + + AG+L + N VE+S
Sbjct: 6 IVLPGDAIDDSQIPTHPKKPLRLGPGLRHDPATNEIRPTVAGQLISDRQKNAMRVETSNG 65
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RY+ V + V+G V AD ++V + + A LP L+FE T++ P G+L+Y R
Sbjct: 66 RYLARVGELVIGTVQKSAADVYYVHLSDHSAPATLPQLSFESATKKTRPMLASGALVYAR 125
Query: 128 VVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLL-------SSPTCPVL 179
V A+ M+ EL C +S GKA G L G +F S G +R L+ + VL
Sbjct: 126 VTVADKHMDAELECVSSSTGKAEGLGPLTGGMLFPVSLGFARRLMMPGAAGAAGGKVVVL 185
Query: 180 EELGK-QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQR 236
E L L FE A G NGR WV++ S TV+ V A+ ++ L +Q+ +V KLL+
Sbjct: 186 EALAAGGLQFETATGRNGRFWVDSASVRTVLAVGRAVQETDEKGLGVEEQQKLVRKLLKE 245
Query: 237 I 237
+
Sbjct: 246 L 246
>gi|451852044|gb|EMD65339.1| hypothetical protein COCSADRAFT_35396 [Cochliobolus sativus ND90Pr]
Length = 242
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 123/233 (52%), Gaps = 11/233 (4%)
Query: 14 IVVPGDVV----LDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKL-RFSKPNKYWVESSQ 67
IV+PGD + L + +T+ +G GLR D+V+ AG L ++ N +E +
Sbjct: 7 IVLPGDEIPKSALPQGTGKKKTLTIGPGLRHIPPDTVTATIAGALVTDNRKNAASIEFNS 66
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+P D V+ V A+ F + T A LP LAFEG T++ P+ SL+Y
Sbjct: 67 GRYLPFTGDLVIATVSSSAAETFNCLLTPSTPPATLPHLAFEGATKKTRPQLPPNSLVYC 126
Query: 127 RVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLS-RMLLSSPTCPVLEELGK 184
RV A + PEL+C D S GK+ GLLK G +F+ S G++ RML + +LE LG
Sbjct: 127 RVASAGKDLPPELTCVDPSTGKSEGLGLLKGGMVFKVSLGMARRMLAARGGITLLETLGA 186
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQ 235
++ FE+ VG NG V V+A S + + AI ++ ++L QK + L+
Sbjct: 187 KIGFEVTVGRNGLVHVDAGSVRATLAIGKAIQEVDEKALGEEGQKKLAGATLK 239
>gi|321468012|gb|EFX78999.1| hypothetical protein DAPPUDRAFT_319933 [Daphnia pulex]
Length = 188
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 102/174 (58%), Gaps = 2/174 (1%)
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
E +++YVP D V+G+V + +++ V+I A L +AF G T++N P +IG L
Sbjct: 12 EIEEEKYVPARGDDVIGVVTNKVGESYKVNIGSSEEASLSSIAFPGATKKNKPNIQIGDL 71
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLK-DGYMFETSTGLSRMLLSSPTCPVLEEL 182
++ +++ A+ M PEL C ++ G+ G+L G++F R LL +P C +L+ L
Sbjct: 72 VFAKLLIASIDMEPELVCVNSLGENVGLGVLSTSGFLFTVPLHHIRKLL-NPECTLLKSL 130
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQR 236
GK LSFEIAVG+NG++W+ A+S + ++ AI SE ++ + + K + R
Sbjct: 131 GKALSFEIAVGMNGKIWIKAKSVKQTIALARAISISEHMNKEEMNKLCRKFVDR 184
>gi|50421149|ref|XP_459120.1| exosome complex component RRP40 [Debaryomyces hansenii CBS767]
gi|49654787|emb|CAG87289.1| DEHA2D14718p [Debaryomyces hansenii CBS767]
Length = 259
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 115/201 (57%), Gaps = 12/201 (5%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAG----KLRFSKPNK---YW 62
+V IV+PGD +L+ ++ T TI G G+ + + +I A ++ +K N +
Sbjct: 1 MVSNIVIPGDGILNDTNTTKTTI--GPGIYKNPQTQEIIPASAGILNVKTNKQNTNTVIF 58
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIG 121
+S+ KRY+P D V+GI+V +++ V ++ T L ++AF +++N P +IG
Sbjct: 59 TDSNSKRYIPQTNDFVIGIIVGVFGESYKVQLQDFSTSVQLSMMAFPNASKKNRPNLKIG 118
Query: 122 SLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVL 179
+Y RV +A P ++ EL C D +GK FGLL + GY+F + +R LL + + L
Sbjct: 119 QAVYARVSQAIPEIDTELECIDPITGKEGGFGLLDESGYIFNINLNFARELLFNQSSVFL 178
Query: 180 EELGKQLSFEIAVGLNGRVWV 200
E+L + FEIA+G+NG+VW+
Sbjct: 179 EKLSTKCKFEIAIGINGKVWL 199
>gi|224133524|ref|XP_002321594.1| predicted protein [Populus trichocarpa]
gi|222868590|gb|EEF05721.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 64/71 (90%)
Query: 168 RMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 227
+++LSSPTCPVLE LGK+LSFEIAVGLNGRVWV A+SPSTV++V NAI+ SESLS QQK
Sbjct: 9 KVMLSSPTCPVLEALGKKLSFEIAVGLNGRVWVKADSPSTVIIVVNAIIKSESLSGAQQK 68
Query: 228 IMVDKLLQRIK 238
IM +KLLQ+I+
Sbjct: 69 IMAEKLLQKIQ 79
>gi|237830329|ref|XP_002364462.1| hypothetical protein TGME49_112400 [Toxoplasma gondii ME49]
gi|211962126|gb|EEA97321.1| hypothetical protein TGME49_112400 [Toxoplasma gondii ME49]
gi|221487539|gb|EEE25771.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221507332|gb|EEE32936.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 275
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 97/162 (59%), Gaps = 8/162 (4%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLA-FEGGTRRNIPKFEI 120
++ SQKRY P D V+GIV K + + V+IR LP+++ FEG TRR+ P+
Sbjct: 91 YIRGSQKRYEPVEGDVVVGIVSGKKNEAYTVNIRARGDGSLPLVSSFEGATRRHKPELRR 150
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAAE------FGLLKDGYMFETSTGLSRMLLSSP 174
GSL+ RV +A+P + EL+C D + K + G L+ G++ + L+ + LSSP
Sbjct: 151 GSLILCRVERASPELGAELTCIDPNCKKSWTSQEKLLGELEGGFVLDVPAPLA-ISLSSP 209
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
C +LE LG++L+FEIA G NGRVW+ A+ +L+ N ++
Sbjct: 210 HCFLLESLGERLAFEIASGANGRVWIRAKDAGDAILIGNILV 251
>gi|449016528|dbj|BAM79930.1| similar to exosome complex exonuclease RRP40 [Cyanidioschyzon
merolae strain 10D]
Length = 270
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 127/244 (52%), Gaps = 24/244 (9%)
Query: 14 IVVPGDVVL-DLSSMTNQTI---KLGGGLRQECD-----SVSVIKAGKLRFSKPNKYWVE 64
+V+PGD VL D + + ++G G+ D + + G+LR++ + VE
Sbjct: 20 LVLPGDTVLADARAQLPANLVPLRVGPGITALPDWNRPSQLIATRTGRLRYAP--RMHVE 77
Query: 65 SSQKRYVP-CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
S+Q+RY+P + V +V D++ V I T A LP+LAFEG T+RN P G +
Sbjct: 78 SNQRRYIPYVNDVVVGVVVDRVGGDHYRVAIGAATPALLPLLAFEGATKRNRPHLAPGHV 137
Query: 124 LYVRVVKA-NPG--MNPELSCTDASGKA-------AEFGLLKDGYMFETSTGLSRMLLSS 173
+Y RV + P ELSC A G A A FG L G +F S +R ++
Sbjct: 138 VYARVTQVPTPQRFAETELSC-QAPGSAKSWTSGEAIFGRLAGGTLFRISLAAARQMIRQ 196
Query: 174 PTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
PVL++LGKQL FE+A+G+NG VWV + T +LV +AI S + + +V +L
Sbjct: 197 -DAPVLQQLGKQLVFELAIGMNGIVWVKGRTTRTTILVRHAIQRGIRSSPTEARRLVRQL 255
Query: 234 LQRI 237
++ +
Sbjct: 256 IEAV 259
>gi|430812777|emb|CCJ29817.1| unnamed protein product, partial [Pneumocystis jirovecii]
gi|430814327|emb|CCJ28423.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 202
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 21/190 (11%)
Query: 51 GKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG 110
G+L S ++++ ++Y P + D+V+G V+ A+ + VD+ G + L LAFE
Sbjct: 2 GRLIQSGKKTFYIDYDCRKYTPVIGDSVIGQVMVKHAEGYKVDLCGTRLGQLGALAFENV 61
Query: 111 TRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASG-KAAEFGLLKDGYMFETSTGLSRM 169
TR++ P ++G+L+Y RV+ A+ + PE+ CTD + K++ FG LK G++ GLSR
Sbjct: 62 TRKSRPNLQVGALIYARVIYADKEIEPEIECTDGTDEKSSIFGELKGGFLIH---GLSRS 118
Query: 170 LLS-----------------SPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVS 212
L P+L LG + FE+AVG NGR+W++++ + +
Sbjct: 119 LCQKYIIQHIIINLIKYRILDKNHPLLSTLGASIPFEVAVGSNGRIWIHSKHVGITIALV 178
Query: 213 NAIMNSESLS 222
AI SESL+
Sbjct: 179 QAIKKSESLN 188
>gi|50308083|ref|XP_454042.1| exosome complex component RRP40 [Kluyveromyces lactis NRRL Y-1140]
gi|49643177|emb|CAG99129.1| KLLA0E02091p [Kluyveromyces lactis]
Length = 240
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQE--CDSVSVIKAGKLRFSKPNK----YWVESS 66
K+++PGDV+ +Q+I G G+ + + AG L PNK +V+ +
Sbjct: 3 KLLLPGDVI-SADETQSQSISAGPGIYSDPLSQEIKATHAG-LEVVTPNKKGASVYVDYN 60
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFV---DIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
KRY+P V D V+G++V D++ V + P L +AF +++N P ++G L
Sbjct: 61 SKRYIPAVGDFVVGVIVASFGDSYRVSLCNFSNPVT--LSYMAFPNASKKNKPTLKVGDL 118
Query: 124 LYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL 182
Y RV A + E+ C D+S G+ A FGLL G E S +R LL + + P+L L
Sbjct: 119 CYARVCSAYKELEAEIECMDSSKGQDAGFGLLDGGMTIEVSLAYARELLFNDSYPLLNIL 178
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
G + FE+A+G+NG +W+ + T + +I+ + +S Q DK ++ I
Sbjct: 179 GNLVEFEVAIGVNGIIWLKTDDVRTTLACYRSILTCQGVSPAQ----FDKTIKSI 229
>gi|367021442|ref|XP_003660006.1| hypothetical protein MYCTH_2115531 [Myceliophthora thermophila ATCC
42464]
gi|347007273|gb|AEO54761.1| hypothetical protein MYCTH_2115531 [Myceliophthora thermophila ATCC
42464]
Length = 250
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 128/248 (51%), Gaps = 28/248 (11%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKP--NKYWVESSQ 67
+V+PG+ + + S + ++LG GLR D V + AG+L + P N W+E +
Sbjct: 8 VVLPGETIDPSLIPSDPKKALRLGPGLRHIPPTDIVPTV-AGQL-MTNPVKNSMWIEYNS 65
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+P D VL V+ D + + T A LP LAFE T++ P G L+Y
Sbjct: 66 NRYIPAPNDIVLAQVLRSTTDFYLCTLSPHTAPATLPHLAFESATKKTRPVLAPGQLVYA 125
Query: 127 RVVKANPGMNPELSCTDAS-GKAAEFG-LLKDGYMFETSTGLSRMLLSSPTCPVLEELG- 183
RV AN M+PEL C ++S GKA G + G +F+ S G +R LL + + E+ G
Sbjct: 126 RVTVANKHMDPELECVNSSTGKAEGLGPVTGPGCVFDVSLGFARRLLMARS---REDGGI 182
Query: 184 -----------KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMV 230
L+FE AVG NG+VWV +ES TVVLV A+ ++ L Q+ +V
Sbjct: 183 AVLEMLGGEEGGGLAFETAVGRNGKVWVGSESARTVVLVGRALQETDRARLGIEGQRRLV 242
Query: 231 DKLLQRIK 238
KL++ ++
Sbjct: 243 KKLVREMR 250
>gi|451997631|gb|EMD90096.1| hypothetical protein COCHEDRAFT_1204709 [Cochliobolus
heterostrophus C5]
Length = 242
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 11/233 (4%)
Query: 14 IVVPGDVV----LDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKL-RFSKPNKYWVESSQ 67
IV+PGD + L + +T+ +G GLR D+V+ AG L ++ N +E +
Sbjct: 7 IVLPGDEIPKSALPQGTGKKKTLTIGPGLRHIPPDTVTATIAGALVTDNRKNAASIEFNS 66
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+P D V+ V A+ F + T A LP LAFEG T++ P+ SL+Y
Sbjct: 67 GRYLPYTGDLVIATVSSSAAETFNCLLTPSTPPATLPHLAFEGATKKTRPQLPPNSLVYC 126
Query: 127 RVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLS-RMLLSSPTCPVLEELGK 184
RV A + PEL+C D S GK+ GLLK G +F+ S G++ RML + +LE LG
Sbjct: 127 RVASAGKDLPPELTCVDPSTGKSEGLGLLKGGMVFKVSLGMARRMLAARGGITLLETLGA 186
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQ 235
++ FE+ VG NG V V+A + + + AI ++ ++L QK + L+
Sbjct: 187 KIGFEVTVGRNGLVHVDAGNVRATLAIGKAIQEVDEKALGEEGQKKLAATTLK 239
>gi|448083642|ref|XP_004195406.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
gi|359376828|emb|CCE85211.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
Length = 268
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 12/197 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKL--RFSKPNKY---WVESS 66
IV+PGD V ++ T G G+ + + +I AG L R +K N +++S+
Sbjct: 9 IVIPGDDVN--INLGESTTTAGPGIYKNPRNQEIIPTTAGYLNVRQNKANTQNLIYIDSN 66
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIR-GPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
KRY+P V D V+GI+ +++ V ++ T L + AF T++N P +G +Y
Sbjct: 67 SKRYIPQVNDLVIGIITGVLGESYKVQLQDHSTNLLLSMTAFPNATKKNRPNLRVGQAVY 126
Query: 126 VRVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELG 183
RV +A+P ++ E+ C D +GK FGLL + GY+F+ + +R LL + P LE+L
Sbjct: 127 ARVSQADPNIDAEVECFDPTTGKDGGFGLLDESGYIFDVNLNFARDLLFNQNSPFLEKLA 186
Query: 184 KQLSFEIAVGLNGRVWV 200
+ FEIA+G+NG++W+
Sbjct: 187 TRCKFEIAIGMNGKIWL 203
>gi|448079101|ref|XP_004194306.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
gi|359375728|emb|CCE86310.1| Piso0_004793 [Millerozyma farinosa CBS 7064]
Length = 268
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 113/198 (57%), Gaps = 14/198 (7%)
Query: 14 IVVPGDVVLDLS-SMTNQTIKLGGGLRQECDSVSVI--KAGKL--RFSKPNKY---WVES 65
IV+PGD D++ ++ G G+ + + +I AG L R +K N +++S
Sbjct: 9 IVIPGD---DININLGESKTTAGPGIYKNPRNQEIIPTTAGYLNVRQNKANTQNLIYIDS 65
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIR-GPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
+ KRY+P V D V+GI+ +++ V ++ T L + AF T++N P +G +
Sbjct: 66 NSKRYIPQVNDLVIGIITGVLGESYKVQLQDHSTNLLLSMTAFPNATKKNRPNLRVGQAV 125
Query: 125 YVRVVKANPGMNPELSCTDAS-GKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEEL 182
Y RV +A+P ++ E+ C DA+ GK FGLL + GY+F+ + +R LL + P LE+L
Sbjct: 126 YARVSQADPNIDAEVECFDATTGKDGGFGLLDESGYIFDVNLNFARDLLFNQNSPFLEKL 185
Query: 183 GKQLSFEIAVGLNGRVWV 200
+ FEIA+G+NG++W+
Sbjct: 186 ATRCRFEIAIGMNGKIWL 203
>gi|323448748|gb|EGB04643.1| hypothetical protein AURANDRAFT_32271 [Aureococcus anophagefferens]
Length = 227
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY P ED V+GIV D A+ + VD+ G ++ L LAF+G T+RN P+ IG ++
Sbjct: 36 KRYAPVEEDYVVGIVEDRGAEAYRVDLLGASVPGNLGALAFDGATKRNRPQLAIGDAVFC 95
Query: 127 RVVKANPGMNPELSCTDASGK-------AAEFGLLKDGYMF---ETSTGLSRMLLSSPTC 176
RV + G +LSC G AA FG L G S +R LL+
Sbjct: 96 RVERTTRGGEAQLSCCATRGSKKEWMTGAATFGKLAAGAACAVASVSPAFARRLLAR-DA 154
Query: 177 PVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
PVL LGK + +E+A+G NG VW+ + + ++VSNA+ N+E L Q MVD+++
Sbjct: 155 PVLAALGKHVKYEVAIGHNGAVWIRSGNTLDTIIVSNAVENAEHLDEAQVAPMVDQIV 212
>gi|254579635|ref|XP_002495803.1| exosome complex component RRP40 [Zygosaccharomyces rouxii CBS 732]
gi|238938694|emb|CAR26870.1| ZYRO0C03388p [Zygosaccharomyces rouxii]
Length = 237
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 10/231 (4%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSV--IKAGKLRFS---KPNKYWVESSQK 68
+V PGD L N+ + +G G+ + S V I AG S K +++ K
Sbjct: 4 VVFPGD---QLHYDENKPLNIGPGVYCDPKSQKVLPINAGSAVVSDSKKDQSLYIDYDSK 60
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RY+P V D V+GI+V D++ V + T LP +AF +++N P +IG L+Y R
Sbjct: 61 RYIPAVGDLVVGIIVGQYTDSYKVSLSSFSTSVTLPYMAFPNASKKNKPTLKIGDLVYAR 120
Query: 128 VVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
V A + EL C DA+ GK A +GLL G + + +R LL + P+L L K
Sbjct: 121 VSSAEKELEAELECVDATTGKDAGYGLLDGGMTVDVTLKFARHLLFDNSFPLLPILAKHT 180
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FEIA+G+NG++W+ E + +I++ +SL K +V + ++
Sbjct: 181 QFEIAIGVNGKIWIKCEEVKDTLACYRSILDCQSLPVSNHKNVVKENFSKV 231
>gi|126274033|ref|XP_001387383.1| exosome complex component RRP40 [Scheffersomyces stipitis CBS 6054]
gi|126213253|gb|EAZ63360.1| Exosome complex exonuclease RRP40 (Ribosomal RNA processing protein
40) [Scheffersomyces stipitis CBS 6054]
Length = 260
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%)
Query: 14 IVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-----YWVESSQ 67
+++PGD + +D S TI G + S+ AG + K ++ES+
Sbjct: 5 LIIPGDFLPIDTDSSIKTTIGPGIYKNPQTQSILPTNAGLINIQKSKAGTNQLVYIESNS 64
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIA-FLPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY P D V+GIV +++ V ++ + A L ++AF T++N P +IG +Y
Sbjct: 65 KRYTPQTNDFVIGIVTGVIGESYKVQLQDFSPAVLLSMMAFPNATKKNRPNLKIGQAVYA 124
Query: 127 RVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELGK 184
RV +A P + EL C D +GK FGLL + GY+FE + +R LL + LE+L
Sbjct: 125 RVSEAIPEIETELECIDPTTGKEGGFGLLDESGYIFEVNLNFARELLFNANSIFLEKLAS 184
Query: 185 QLSFEIAVGLNGRVWV 200
+ FEIAVG+NG+VW+
Sbjct: 185 KCKFEIAVGINGKVWI 200
>gi|323448934|gb|EGB04826.1| hypothetical protein AURANDRAFT_31793 [Aureococcus anophagefferens]
Length = 227
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY P ED V+GIV D A+ + VD+ G ++ L LAF+G T+RN P+ IG ++
Sbjct: 36 KRYAPVEEDYVVGIVEDRGAEAYRVDLLGASVPGNLGALAFDGATKRNRPQLAIGDAVFC 95
Query: 127 RVVKANPGMNPELSCTDASGK-------AAEFGLLKDGYMF---ETSTGLSRMLLSSPTC 176
RV + G +LSC G AA FG L G S +R LL+
Sbjct: 96 RVERTTRGGEAQLSCCATRGSKKEWMTGAATFGKLAAGAACAVASVSPAFARRLLAR-DA 154
Query: 177 PVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLL 234
PVL LGK + +E+A+G NG VW+ + + ++VSNA+ N+E L Q MVD+++
Sbjct: 155 PVLAALGKHVKYEVAIGHNGAVWIRSGNTLDTIIVSNAVENAEHLDEAQVAPMVDQIV 212
>gi|401623722|gb|EJS41810.1| rrp40p [Saccharomyces arboricola H-6]
Length = 240
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 9/194 (4%)
Query: 32 IKLGGGLRQECDSVSV--IKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIVVD 84
IKLG GL + +S V + G L S K +++ S KRYVP V D V+G +
Sbjct: 19 IKLGPGLYCDPNSQEVRPVNTGILHVSTKGKSGVQAAYIDYSSKRYVPSVGDFVIGTITG 78
Query: 85 CKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTD 143
+D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C D
Sbjct: 79 TFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVYTAEKELEAEVECVD 138
Query: 144 AS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNA 202
++ G+ A FGLL+DG + + S +R LL + P+L+ L FEIA+GLNG++W+
Sbjct: 139 STTGRDAGFGLLEDGIIIDVSLNFARQLLFNDEFPLLKVLAAHAKFEIAIGLNGKIWIKC 198
Query: 203 ESPSTVVLVSNAIM 216
E S + I+
Sbjct: 199 EELSNSLACYRTIL 212
>gi|403213304|emb|CCK67806.1| hypothetical protein KNAG_0A01170 [Kazachstania naganishii CBS
8797]
Length = 236
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 109/198 (55%), Gaps = 12/198 (6%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSV----IKAGKLRF-SKPNKYWVESSQ 67
++V+PGD L + LG G+ CD ++ + AG + K N +V+ +
Sbjct: 3 ELVLPGD---SLGIHDGVPVILGPGV--SCDPMTQEVIPVNAGVRHYIEKKNTVYVDYNA 57
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY+P V D V+G +V AD++ V + + + L ++F T++N P ++G L+Y
Sbjct: 58 KRYIPAVGDLVIGTIVSTFADSYKVSLSDFSASVSLSYMSFPNATKKNRPTLQVGDLVYA 117
Query: 127 RVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQ 185
RV+ A + E+ C D+ +G A FGLL++G + +R LL + T P+L L +
Sbjct: 118 RVLTAEKELEAEIECMDSVTGVHAGFGLLENGMVISVPLSFARTLLFNDTFPLLSTLAQS 177
Query: 186 LSFEIAVGLNGRVWVNAE 203
FEIA+G+NGR+WV+ +
Sbjct: 178 CQFEIAIGINGRIWVSTD 195
>gi|323352278|gb|EGA84813.1| Rrp40p [Saccharomyces cerevisiae VL3]
Length = 226
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 13/207 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIMNSESLSAVQQK 227
E S + IM + +Q+
Sbjct: 197 KCEELSNTLACYRTIMECCTKKKTRQR 223
>gi|448262639|pdb|4IFD|G Chain G, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 242
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 21 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 78
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 79 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 138
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 139 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 198
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 199 KCEELSNTLACYRTIM 214
>gi|330443719|ref|NP_014499.2| Rrp40p [Saccharomyces cerevisiae S288c]
gi|347595699|sp|Q08285.2|RRP40_YEAST RecName: Full=Exosome complex component RRP40; AltName:
Full=Ribosomal RNA-processing protein 40
gi|51013303|gb|AAT92945.1| YOL142W [Saccharomyces cerevisiae]
gi|329138968|tpg|DAA10643.2| TPA: Rrp40p [Saccharomyces cerevisiae S288c]
gi|349581031|dbj|GAA26189.1| K7_Rrp40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296393|gb|EIW07495.1| Rrp40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 240
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 197 KCEELSNTLACYRTIM 212
>gi|146422450|ref|XP_001487163.1| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 15/197 (7%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQE--CDSVSVIKAGKLRFSKPNK------YWVES 65
+++PGD + T +G G ++ D+V + AG + K NK +V+S
Sbjct: 3 VIIPGDHIPPNEVKTT----IGPGFYRQPITDNVVPVSAG-IVHDKINKQGTNRLLYVDS 57
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
+ KRY+P V D V+GIV + + V ++G + L ++AF ++N P + G +
Sbjct: 58 NSKRYIPQVNDFVIGIVTGVIGEAYKVSLQGFSSSVLLSMMAFPNANKKNRPNLKNGQAV 117
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELG 183
Y RV KA + E+ C D+SGK FG+L + G +FE + +R LL S P+LE+L
Sbjct: 118 YARVTKAMSEIESEIECMDSSGKEGGFGVLSESGLIFEVNLHYARDLLFSHNSPILEKLS 177
Query: 184 KQLSFEIAVGLNGRVWV 200
+ FEIA+G+NG++W+
Sbjct: 178 SKCKFEIAIGINGKIWI 194
>gi|151945494|gb|EDN63735.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190407211|gb|EDV10478.1| 3' -> 5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|207341466|gb|EDZ69514.1| YOL142Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270142|gb|EEU05372.1| Rrp40p [Saccharomyces cerevisiae JAY291]
gi|259149346|emb|CAY86150.1| Rrp40p [Saccharomyces cerevisiae EC1118]
gi|323335605|gb|EGA76888.1| Rrp40p [Saccharomyces cerevisiae Vin13]
gi|323346663|gb|EGA80947.1| Rrp40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 197 KCEELSNTLACYRTIM 212
>gi|1420040|emb|CAA99163.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 240
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNFNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 197 KCEELSNTLACYRTIM 212
>gi|323331622|gb|EGA73036.1| Rrp40p [Saccharomyces cerevisiae AWRI796]
Length = 231
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 197 KCEELSNTLACYRTIM 212
>gi|328854865|gb|EGG03995.1| hypothetical protein MELLADRAFT_29054 [Melampsora larici-populina
98AG31]
Length = 143
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP + + V+GI+V +AD + VDI A L LAFE T+R+ P +IG+++Y RV
Sbjct: 1 YVPALGEPVIGIIVSRQADGYKVDIGSSLTARLDALAFESATKRSKPNLKIGTVVYARVS 60
Query: 130 KANPGMNPELSCTDASG-KAAEFGLLKDGY-MFETSTGLSRMLLSSPTCPVLEELGKQLS 187
A P + PEL C D + KA FG + GY M + SR+LLS P +L +LG+Q+
Sbjct: 61 LALPFIEPELECMDPTTMKANGFGEMTGGYLMRDLDLRNSRLLLSPPQT-LLAKLGQQVP 119
Query: 188 FEIAVGLNGRVWVNAESPSTVVLV 211
+EI++GLNGR+W+ A++ S + +
Sbjct: 120 YEISIGLNGRIWLKAKTVSQTIYL 143
>gi|443894214|dbj|GAC71563.1| exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Pseudozyma
antarctica T-34]
Length = 333
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 12/159 (7%)
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+ ++YVP D+V+ + + AD++ V + G A LP LAFEG T+R+ P IG+L
Sbjct: 117 DPHARQYVPAPGDSVVAQITNRGADSYTVSLFGAHAATLPALAFEGATKRHKPNLNIGAL 176
Query: 124 LYVRVVKANPGMNPELSCTDA-SGKAAEFGLLK----------DGYMFETSTGLSRMLLS 172
+Y R+V A+ PEL+C + + K+ FG LK +F TS GL+R LL
Sbjct: 177 VYARIVSADRFTEPELTCLNPLTAKSDGFGHLKTTDHRGEKVAHAMLFHTSLGLARSLL- 235
Query: 173 SPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLV 211
P P+L + FE A+G NG VWV A P+ ++ V
Sbjct: 236 RPDHPLLGLVAAHFPFEAAIGQNGAVWVRANEPNHLIAV 274
>gi|385305281|gb|EIF49269.1| rrp40p [Dekkera bruxellensis AWRI1499]
Length = 236
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 2/180 (1%)
Query: 61 YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFE 119
Y+VE++ KRY+P D V+G+++ D + V + ++ L +F + +N P+ E
Sbjct: 49 YYVEANSKRYLPESGDNVIGVIIGSFGDFYRVSLNDFSVPVVLNQFSFPNASXKNRPRLE 108
Query: 120 IGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
+G L+Y RV NP ++ E+SC D +GKA +G L+ G +F+ +R LL P +
Sbjct: 109 VGDLIYARVESVNPNVDAEISCVDPTTGKAEGYGKLEGGMVFKVKLAYARNLLFDPNAHI 168
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L EL + FEIA+G+NG++W+ + + I S+ S K V+ +K
Sbjct: 169 LTELVTKCKFEIAIGVNGKIWLKTDDIHSTXACGRCIEKSQQWSDADIKANVEDXFAAMK 228
>gi|190344709|gb|EDK36442.2| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 15/197 (7%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQE--CDSVSVIKAGKLRFSKPNK------YWVES 65
+++PGD + T +G G ++ D+V + AG + K NK +V+S
Sbjct: 3 VIIPGDHIPPNEVKTT----IGPGFYRQPITDNVVPVSAG-IVHDKINKQGTNRLLYVDS 57
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLL 124
+ KRY+P V D V+GIV + + V ++G + + L ++AF ++N P + G +
Sbjct: 58 NSKRYIPQVNDFVIGIVTGVIGEAYKVSLQGFSSSVSLSMMAFPNANKKNRPNLKNGQAV 117
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELG 183
Y RV KA + E+ C D+SGK FG+L + G +FE + +R LL S P+LE+L
Sbjct: 118 YARVTKAMSEIESEIECMDSSGKEGGFGVLSESGLIFEVNLHYARDLLFSHNSPILEKLS 177
Query: 184 KQLSFEIAVGLNGRVWV 200
+ FEIA+G+NG++W+
Sbjct: 178 SKCKFEIAIGINGKIWI 194
>gi|323307346|gb|EGA60625.1| Rrp40p [Saccharomyces cerevisiae FostersO]
Length = 240
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAYTKFEVAIGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 197 KCEELSNTLACYRTIM 212
>gi|255717512|ref|XP_002555037.1| exosome complex component RRP40 [Lachancea thermotolerans CBS 6340]
gi|238936420|emb|CAR24600.1| KLTH0F19558p [Lachancea thermotolerans CBS 6340]
Length = 236
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAG--KLRFSKPN-KYWVESSQ 67
++ ++ PGD LD++ N I G + + AG + +K N V+ +
Sbjct: 1 MNTLIAPGDK-LDIADKENVVIGPGVYCDPRTQEIRPVNAGFEVIGSTKKNLSIRVDHNS 59
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY+P V D V+G++ +D++ V + + L +AF +++N P ++G L+Y
Sbjct: 60 KRYIPAVGDLVVGLITGSFSDSYRVSLASFSSPVTLSYMAFPNASKKNRPSLKVGDLVYA 119
Query: 127 RVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQ 185
RV KA+ + E+ C D++ GK A FGLL G + + S SR L + P+L L K
Sbjct: 120 RVCKADKELEAEIECVDSTTGKDAGFGLLDGGMVADVSLAFSRELTFNNEYPLLTLLAKN 179
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FEIA+G+NG+VW+ + + + +I + +S + + K ++ + + +
Sbjct: 180 AQFEIAIGINGKVWIKCDDVKSTLACYRSINDCQSHPSAEHKFIISQHFKAV 231
>gi|389646525|ref|XP_003720894.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae 70-15]
gi|86196555|gb|EAQ71193.1| hypothetical protein MGCH7_ch7g600 [Magnaporthe oryzae 70-15]
gi|351638286|gb|EHA46151.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae 70-15]
gi|440473278|gb|ELQ42086.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae Y34]
gi|440488090|gb|ELQ67835.1| exosome complex exonuclease RRP40 [Magnaporthe oryzae P131]
Length = 264
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 33/256 (12%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKL--RFSKPNKYWVESSQK 68
V+PG+ + + + + ++LG GLR D + AGKL +KP+ ++ +
Sbjct: 9 FVLPGEAIDPSLIPTHPKRPLRLGPGLRHIPPDEIVPTVAGKLVVNPAKPS-LSLDYNGG 67
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RYVP D V+G V AD FV + T A LPVLAFEG TR+ P GSL+Y R
Sbjct: 68 RYVPEPNDLVIGQVHHSSADFHFVTLAPHTTNALLPVLAFEGATRKTRPVLPAGSLVYAR 127
Query: 128 VVKANPGMNPELSC-TDASGKAAEFGLLK-----------------DGYMFETSTGLSRM 169
V A+ M+ EL C + +GKA G L G +F S G++R
Sbjct: 128 VASASRHMDAELECFSQTTGKADGLGPLNPPAAAAPGAGAVAAAAPTGTVFNVSLGMARR 187
Query: 170 LL-----SSPTCPVLEELGKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESL 221
LL VL+ L + L+FE AVG NG+VWV +ES T+VLV A+ ++ + L
Sbjct: 188 LLMPQAERDAGLVVLDALAAEGLAFETAVGRNGKVWVASESVPTLVLVGRALAEVDEKGL 247
Query: 222 SAVQQKIMVDKLLQRI 237
Q+ +V KL++ +
Sbjct: 248 DMDAQRRLVKKLVREM 263
>gi|344232284|gb|EGV64163.1| hypothetical protein CANTEDRAFT_114211 [Candida tenuis ATCC 10573]
Length = 247
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 110/196 (56%), Gaps = 14/196 (7%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAG----KLRFSKPNK---YWVESSQ 67
+VPGD LD+ M +G G+ + + ++I A ++ +K N ++ES
Sbjct: 3 IVPGDA-LDIQQMKTT---IGPGVYKNPKTQNIIPAAAGYLNVKINKKNTNQLAYIESKS 58
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY+P D V+GIV +++ V ++ + L ++AF T++N P ++G ++Y
Sbjct: 59 KRYIPKANDFVVGIVTGTIGESYKVSLQDFSANVLLSMMAFPNATKKNRPNLKVGQVVYA 118
Query: 127 RVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELGK 184
RV + P ++ E+ C D A+GK FG+L + GY+FE + LL +P+ LE+L
Sbjct: 119 RVSQDIPEIDIEIECIDPATGKEGGFGMLDESGYIFEVGLNYANELLFNPSSVYLEKLAS 178
Query: 185 QLSFEIAVGLNGRVWV 200
+ FE+A+GLNG++W+
Sbjct: 179 KCKFEVAIGLNGKIWI 194
>gi|323303100|gb|EGA56902.1| Rrp40p [Saccharomyces cerevisiae FostersB]
Length = 231
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 105/196 (53%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAXGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 197 KCEELSNTLACYRTIM 212
>gi|322709661|gb|EFZ01237.1| hypothetical protein MAA_03833 [Metarhizium anisopliae ARSEF 23]
Length = 269
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 127/262 (48%), Gaps = 42/262 (16%)
Query: 14 IVVPGDVVL-DL-SSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFSKP-NKYWVESSQKR 69
V+PGD + DL S + ++LG GLR + V AG+ +P N VE+S R
Sbjct: 7 FVLPGDHIPPDLVPSHPKKPLRLGPGLRHVPPNDVVPTLAGQFVTDRPKNAIRVENSHGR 66
Query: 70 ------------------------YVPCVEDTVLGIVVDCKADNFFV---DIRGPTIAFL 102
YVP V + V+G + AD ++V D P I L
Sbjct: 67 VSRLLFIDYLSGNVANGGSGYCLQYVPRVGELVIGTIHKTAADVYYVHLSDYTAPVI--L 124
Query: 103 PVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFE 161
P L+FE T++ P G+L+Y RV AN M+ EL C +S GK+ G L G MF+
Sbjct: 125 PQLSFESATKKTRPVLAPGALVYARVTLANKHMDAELECVSSSTGKSDGLGPLTGGMMFD 184
Query: 162 TSTGLSRMLLSSPTCP-----VLEELGK-QLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
S G++R L+ + VLEELG L F+ A G NGR WV++E+ TV+ V AI
Sbjct: 185 ISLGMARRLMMPKSVQEGKIVVLEELGALGLQFDTATGRNGRFWVDSENTKTVLAVGRAI 244
Query: 216 MNSES--LSAVQQKIMVDKLLQ 235
++ L QK +V K+++
Sbjct: 245 QETDERRLGVEDQKKLVRKIIK 266
>gi|320589186|gb|EFX01648.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 273
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 124/267 (46%), Gaps = 45/267 (16%)
Query: 14 IVVPGDVVLD---LSSMTNQTIKLGGGLR---QECDSVSVIKAGKLRFSKPNKYWVESSQ 67
IV+PGD V L + ++LG GLR E V+ + + N WVE+
Sbjct: 4 IVLPGDDVDPTALLPPADKKPLRLGPGLRVLLPEGRLVATVPGLLAADRRKNLLWVEAGG 63
Query: 68 K--RYVPCVEDTVLGIVVDCKADNFFVDIRG----PTIAFLPVLAFEGGTRRNIPKFEIG 121
+ RY P D V+G V AD V + P A LPVLAF G +R+N P + G
Sbjct: 64 RGGRYAPATGDLVVGQVQHASADQAVVALAAHDAPPLRAVLPVLAFAGASRKNRPDLQPG 123
Query: 122 SLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP--- 177
+L+Y RV A M+ EL C D +GKA G L G +F S ++R LL + +
Sbjct: 124 TLVYARVAFAARHMDTELECVDGTTGKADGLGPLLGGMVFAVSLQMARRLLMASSAASGI 183
Query: 178 -VLEELGKQ-LSFEIAVGLNGRVWVNA-------------------------ESPSTVVL 210
VLE L ++ L+FE AVG NGR+WV + TV+L
Sbjct: 184 VVLEALAQEGLAFETAVGRNGRLWVRSATATATATATADNKQQKQQKQNSSRNDSHTVIL 243
Query: 211 VSNAIMNSES--LSAVQQKIMVDKLLQ 235
V A+ +++ L QQ+ +V K ++
Sbjct: 244 VGRAVTATDAGNLDPAQQRALVRKFVR 270
>gi|312079999|ref|XP_003142414.1| exosome complex exonuclease RRP40 [Loa loa]
Length = 174
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQ---ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
+I +PGD++ + +T +G GL + D + V++ G R S K W+ +R
Sbjct: 3 EIHLPGDILSLVVPGKGRTEIIGCGLERVINNPDQLLVVQPGIRRVSH-GKQWMAVHSRR 61
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
YVP D V+GIV + F +DI IAF+ L+FEG TRRN P ++G L+Y V
Sbjct: 62 YVPQKGDFVIGIVTSVHGETFKIDIGAADIAFISFLSFEGATRRNRPNLKVGDLIYASVT 121
Query: 130 KANPGMNPELSCTDASGKAAEFG-LLKDGYMFETSTGLSRMLLSSPTCPVL 179
A + PEL+C D G+A G L G++F+TS L R +L SPT +L
Sbjct: 122 TATKHLEPELTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRIL-SPTSKLL 171
>gi|156841385|ref|XP_001644066.1| hypothetical protein Kpol_1014p28 [Vanderwaltozyma polyspora DSM
70294]
gi|156114700|gb|EDO16208.1| hypothetical protein Kpol_1014p28 [Vanderwaltozyma polyspora DSM
70294]
Length = 237
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDS----VSVIKAGKLRFSKPNK---YWVESS 66
+V+PGD ++ + + LG G+ CD V + AG L + + +V+
Sbjct: 4 LVLPGD---NVEVDAGKPVSLGPGMY--CDPKTQMVLPVNAGVLNRTDNKRGQTLYVDYD 58
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
KRY+P D V+G++ AD++ V + T L +AF +++N P +IG L+Y
Sbjct: 59 SKRYIPATGDFVIGVITGAFADSYRVSLSSFSTPVSLSYMAFPNASKKNRPTLKIGDLVY 118
Query: 126 VRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
RV + + E+ C D++ G+ A FGLL +G + E S G +R LL + P+L+ L K
Sbjct: 119 ARVCSSEKELEAEIECMDSTTGQDAGFGLLDEGMVAEVSLGFARQLLYNNDFPLLKLLAK 178
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN 217
FEIA+GLNG++W+ + + +I++
Sbjct: 179 HAQFEIAIGLNGKIWLKSNDIKNTLACYKSILD 211
>gi|452837031|gb|EME38974.1| hypothetical protein DOTSEDRAFT_39165 [Dothistroma septosporum
NZE10]
Length = 243
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 16/240 (6%)
Query: 14 IVVPGDVVL--DLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFS-KPNKYWVESSQKR 69
I++PG+ + L T+ LG GLR ++ +G L+ K + W+E R
Sbjct: 4 ILLPGEQIPTDQLPKSKKGTLTLGPGLRHIPPQTILTTTSGTLQIDPKKSALWLEHPNGR 63
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
YVP D ++ + +D +F + T A L L+FEG +++ P+ + G L+Y RV
Sbjct: 64 YVPSSGDLIIAQIHHTGSDVYFCSLTPHTPHALLGQLSFEGANKKSRPQLKAGDLVYARV 123
Query: 129 VKANPGMNPELSC-TDASGKAAEFGLLKDGYMFETSTGLSRMLL--------SSPTCPVL 179
+ + E+ C + A+GKA G L G F S G +R L+ S VL
Sbjct: 124 TSTSRWEDTEIECVSSATGKADGMGPLSGGMCFWVSCGFARRLMMGTGKEGRSKGGVVVL 183
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQRI 237
EE+G+++ FE+AVG NGRVWV++ S V++ + + E L QK +V + L+ +
Sbjct: 184 EEVGEKVRFEVAVGRNGRVWVDSGSVRETVMIGRLLRQADEEGLDVEAQKKLVKRALKDV 243
>gi|402589068|gb|EJW83000.1| exosome complex exonuclease RRP40 [Wuchereria bancrofti]
Length = 206
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 92/184 (50%), Gaps = 18/184 (9%)
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG---------------- 109
+RY+P D V+GIV + F +DI IAF+ L+FEG
Sbjct: 4 HSRRYIPQKGDRVIGIVTSTHGETFKIDIGSADIAFISFLSFEGLIAHLILHISTLLGSV 63
Query: 110 GTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSR 168
TRRN P ++G L+Y V A + PEL+C D G+A GLL G++F+TS L R
Sbjct: 64 ATRRNRPNLKVGDLIYASVTTATKHLEPELTCVDGEGRARGMGLLPSGGFLFKTSLNLVR 123
Query: 169 MLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKI 228
+LS + +L +GK + FEI G+NGR+W+ + V+ V I SE +
Sbjct: 124 RILSP-SSRLLSLIGKDIKFEITSGMNGRIWIKGINVVEVIAVCRIIKESEFIPESDIPA 182
Query: 229 MVDK 232
VDK
Sbjct: 183 FVDK 186
>gi|224000105|ref|XP_002289725.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974933|gb|EED93262.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 363
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 120/255 (47%), Gaps = 62/255 (24%)
Query: 45 VSVIKAGKLRFSKPNKYW-VESSQKRY--------VPC------------------VEDT 77
+ I AG+L + ++ W V S+ +RY V C V D
Sbjct: 105 IQAIIAGRLLYRPSSRTWFVASNPRRYHLSTSPSNVSCTLINGNNSKAIKNKHMAGVGDR 164
Query: 78 VLGIVVDCKA--DNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG- 134
V+GI+ D KA D + V I G A L VL+FEG T+RN P+ E G L+Y RVVK G
Sbjct: 165 VIGIIEDQKASADYYRVQIFGSHSALLHVLSFEGATKRNRPQLEPGCLVYFRVVKGFGGG 224
Query: 135 -MNPELSC---------------------TDASGKAAE--------FGLLKDGYMFETST 164
M+PE+SC D G + + +G L G F S
Sbjct: 225 RMDPEVSCKVGGSGGGGSSGGKSTFNEDENDDGGASRKDWLTNEGTYGPLNGGTSFRISL 284
Query: 165 GLSRMLLSSPTCPVLEELGKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSA 223
GL+R LL +P VL L K + FEIA+G+NG VWVN+ +++ NAI NSE ++
Sbjct: 285 GLARELL-NPKNAVLAALDKSGIPFEIAIGVNGMVWVNSPEAEYTIIILNAIKNSEVMNE 343
Query: 224 VQQKIMVDKLLQRIK 238
Q + MV L+ +K
Sbjct: 344 EQVRGMVKALVMGVK 358
>gi|367008036|ref|XP_003688747.1| exosome complex component RRP40 [Tetrapisispora phaffii CBS 4417]
gi|357527057|emb|CCE66313.1| hypothetical protein TPHA_0P01550 [Tetrapisispora phaffii CBS 4417]
Length = 237
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 12/233 (5%)
Query: 13 KIVVPGD-VVLDLSSMTNQTIKLGGGLRQE--CDSVSVIKAGKLRFSKPNK---YWVESS 66
+ +VPGD LDL+ T LG G+ + V+V+ AG L + + +V+ +
Sbjct: 3 QFIVPGDDFQLDLTKET----ALGPGMYYDPKTQRVAVVAAGMLNVVETKRGQTVYVDYN 58
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLY 125
KRY+P V D V+G + D + V + + + L +AF +++N P ++G L Y
Sbjct: 59 TKRYIPAVGDFVIGTITGAYGDRYKVSLSNFSNSVSLSYMAFPNASKKNRPTLKVGDLAY 118
Query: 126 VRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
R+ A + E+ C D+S G + FG L++G + ET +R LL P+L+ L K
Sbjct: 119 ARICSAEKELEAEIECMDSSTGVDSGFGSLENGMVIETKLPFARRLLFDNDFPLLQLLAK 178
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FEIA+GLNG VWV + +I++ ++ Q K ++ +++
Sbjct: 179 HTKFEIAIGLNGVVWVKCAEVKNTLACYRSILDCQNAKIEQYKNIIKMHFEQL 231
>gi|396469774|ref|XP_003838488.1| similar to exosome complex exonuclease Rrp40 [Leptosphaeria
maculans JN3]
gi|312215056|emb|CBX95009.1| similar to exosome complex exonuclease Rrp40 [Leptosphaeria
maculans JN3]
Length = 239
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 125/239 (52%), Gaps = 11/239 (4%)
Query: 10 LVDKIVVPGDVV----LDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRF-SKPNKYWV 63
+ IV+PGDV+ L + +T+KLG GLR ++V AG L +K N V
Sbjct: 1 MATTIVLPGDVIPKSSLPSGTGKKKTLKLGPGLRHIPPNTVVTTIAGALTIDNKKNAAAV 60
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGS 122
E++ RY P D V+ V A+NF + T A LP LAFEG T++ P+ S
Sbjct: 61 EANTGRYTPYTGDLVIATVSSSAAENFNCLLSPHTPFATLPHLAFEGATKKTRPQLPPAS 120
Query: 123 LLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLS-RMLLSSPTCPVLE 180
L+Y RV A + PEL+C D S GK GLLK G +F+ S G++ RML + P+LE
Sbjct: 121 LVYCRVASAGKDLPPELTCVDPSTGKGDGLGLLKGGMLFKISLGMARRMLAAKGGLPLLE 180
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQRI 237
+G ++ FE+ VG NG V V + T + V AI ++ + L QK + L+ I
Sbjct: 181 TMGSKVGFEVTVGRNGLVHVEGGNVRTTLAVGRAIQEVDEKGLGEEGQKKVAASALKNI 239
>gi|402075473|gb|EJT70944.1| hypothetical protein GGTG_11967 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 342
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 124/278 (44%), Gaps = 55/278 (19%)
Query: 14 IVVPGDVV--LDLSSMTNQTIKLGGGLRQECDS--VSVIKAGKLRFSKPNKYWVESSQKR 69
V+PG+ + + + + ++LG GLR S V + + K WVE + R
Sbjct: 11 FVLPGEALPPAQIPTHPKRALRLGPGLRHIPPSSIVPTVAGQVVADGKKTAVWVEYNGGR 70
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
YVP D V+G V AD FV + P A LP+LAFEG TR+ P GSL+Y R
Sbjct: 71 YVPAAGDLVVGQVHHSSADYHFVSLAPHAPN-ALLPMLAFEGATRKTRPVLGPGSLVYAR 129
Query: 128 VVKANPGMNPELSC-TDASGKAAEFGLL-------------------------------- 154
V A+ M+PEL C + A+GKA G L
Sbjct: 130 VAMASRHMDPELECVSQATGKADGLGPLPSPSAAAAGAPQPQPQQQQQQASGNNGASAPA 189
Query: 155 -------KDGYMFETSTGLSRMLL-----SSPTCPVLEELGKQ-LSFEIAVGLNGRVWVN 201
G +F S G +R LL VL+ L + L+FE AVG NGRVWV
Sbjct: 190 GAAAVSATTGTVFNVSLGFARRLLMPRAERDAGLVVLDALADEGLAFETAVGRNGRVWVA 249
Query: 202 AESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQRI 237
++S T+VLV + ++ L Q+ +V +L++ +
Sbjct: 250 SDSLPTLVLVGRTLAEVDEGGLDVAAQRKLVKRLIKEM 287
>gi|238879390|gb|EEQ43028.1| exosome complex exonuclease RRP40 [Candida albicans WO-1]
Length = 270
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 10/201 (4%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFSKPNK-----YW 62
+ D I++PGD + ++ +G G+ ++ + +I AG L + + +
Sbjct: 1 MSDTIILPGDKLPIDEDISTVKTTIGPGIYKKPKTQELIPSAAGILHYERAKSSSQQLIY 60
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIR-GPTIAFLPVLAFEGGTRRNIPKFEIG 121
+ES+ KRY+P D V+GI+ +++ V ++ T L AF +++N P + G
Sbjct: 61 IESNSKRYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVLLSFWAFPNASKKNRPNLKNG 120
Query: 122 SLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVL 179
+Y RV + P + EL C D SGK FG+L + GY+F+ +R LL +P L
Sbjct: 121 QAVYARVSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKTIFL 180
Query: 180 EELGKQLSFEIAVGLNGRVWV 200
E L + FEIA+G+NG++W+
Sbjct: 181 ETLATRCQFEIAIGINGKIWI 201
>gi|68475021|ref|XP_718396.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|68475558|ref|XP_718127.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46439883|gb|EAK99195.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46440161|gb|EAK99470.1| likely exosome component Rrp40p [Candida albicans SC5314]
Length = 270
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 108/202 (53%), Gaps = 12/202 (5%)
Query: 10 LVDKIVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFSKPNK-----Y 61
+ D I++PGD + +D T +T +G G+ ++ + +I AG L + +
Sbjct: 1 MSDTIILPGDKLPIDEDIFTVKTT-IGPGIYKKPKTQELIPSAAGILHYERAKSSSQQLI 59
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIR-GPTIAFLPVLAFEGGTRRNIPKFEI 120
++ES+ KRY+P D V+GI+ +++ V ++ T L AF +++N P +
Sbjct: 60 YIESNSKRYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVLLSFWAFPNASKKNRPNLKN 119
Query: 121 GSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPV 178
G +Y RV + P + EL C D SGK FG+L + GY+F+ +R LL +P
Sbjct: 120 GQAVYARVSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKTIF 179
Query: 179 LEELGKQLSFEIAVGLNGRVWV 200
LE L + FEIA+G+NG++W+
Sbjct: 180 LETLATRCQFEIAIGINGKIWI 201
>gi|122920873|pdb|2JA9|A Chain A, Structure Of The N-Terminal Deletion Of Yeast Exosome
Component Rrp40
Length = 175
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY+P V D V+G+++ +D++ V ++ + + L +AF +++N P ++G L+Y
Sbjct: 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYA 60
Query: 127 RVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQ 185
RV A + E+ C D++ G+ A FG+L+DG + + + +R LL + P+L+ L
Sbjct: 61 RVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAH 120
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
FE+A+GLNG++WV E S + IM
Sbjct: 121 TKFEVAIGLNGKIWVKCEELSNTLACYRTIM 151
>gi|119194947|ref|XP_001248077.1| hypothetical protein CIMG_01848 [Coccidioides immitis RS]
gi|392862680|gb|EAS36662.2| exosome complex exonuclease Rrp40 [Coccidioides immitis RS]
Length = 261
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 133/253 (52%), Gaps = 30/253 (11%)
Query: 14 IVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSVI-----KAGKLRFSKPNKYWVE--- 64
I++PGD V L + +N ++KLG L + S I +AG L P + V
Sbjct: 6 ILLPGDTVPSHLKTASNNSLKLGQNLHVLSHATSPIPITSTQAG-LLLQDPKRNSVNILT 64
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSL 123
++RY+P D V+ + AD F + T FLP LAFEG TR+ P+ + G L
Sbjct: 65 FPRRRYIPQPSDLVIAQIHHSSADYFHCTLSPHTPHVFLPQLAFEGATRKTRPQLKSGEL 124
Query: 124 LYVRV--VKANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLLS---SPT 175
+Y RV V PG EL+C + A+GKA G L G +F+ S GL+ L+S S
Sbjct: 125 VYARVLSVGLGPGAEIELTCVNPATGKAEPGGLGPLNGGMVFDVSVGLAGRLMSPGGSGG 184
Query: 176 CPVLEELGKQL----SFEIAVGLNGRVWVNA-----ESPSTVVLVSNAI--MNSESLSAV 224
VLEELGK+L FEIAVG NGRVWV++ E +V V + ++ E+L
Sbjct: 185 VVVLEELGKKLESLGGFEIAVGKNGRVWVDSSAGGEEGIKMIVAVGRCLREVDEENLEVG 244
Query: 225 QQKIMVDKLLQRI 237
+QK +V ++L+++
Sbjct: 245 EQKKLVSRVLKQM 257
>gi|452987317|gb|EME87073.1| hypothetical protein MYCFIDRAFT_86501 [Pseudocercospora fijiensis
CIRAD86]
Length = 240
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 11/236 (4%)
Query: 13 KIVVPGDVVL--DLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRF-SKPNKYWVESSQK 68
KI++PGD + L T+ LG LR ++ +G L K + W+E
Sbjct: 3 KILLPGDQIPSDQLPKSKKGTLTLGPHLRHIPPSTILSTTSGTLHTDHKKSAIWIEHENG 62
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RYVP V D V+ V D F + T A L LAFEG +++ P+ + G L+Y R
Sbjct: 63 RYVPAVGDLVIAQVHHGSTDYFHCALTPHTAYAVLGQLAFEGASKKTRPQLKSGDLVYAR 122
Query: 128 VVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLL---SSPTCPVLEELG 183
V +++ E+ C ++ +GKA G L G +F+ S G +R L+ +L+E+G
Sbjct: 123 VCRSSKWEETEIECVNSNTGKAEGMGPLSGGMLFDISPGFARRLMLGAKKGGIGILDEVG 182
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSN--AIMNSESLSAVQQKIMVDKLLQRI 237
+++ FE+AVG NG+VWV++ S V++ + + E +QK V L+ +
Sbjct: 183 EKVKFEVAVGRNGKVWVDSGSVRETVVIGRLLKMCDEEGWDRERQKREVKAALKGV 238
>gi|401411503|ref|XP_003885199.1| hypothetical protein NCLIV_055960 [Neospora caninum Liverpool]
gi|325119618|emb|CBZ55171.1| hypothetical protein NCLIV_055960 [Neospora caninum Liverpool]
Length = 276
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 8/162 (4%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLA-FEGGTRRNIPKFEI 120
++ KRY P D V+GIV K + + V+IR FLP++A FEG TRR+ P+
Sbjct: 92 YLRGRHKRYEPAEGDVVVGIVSGKKNEAYSVNIRARGDGFLPLVAGFEGATRRHKPELHR 151
Query: 121 GSLLYVRVVKANPGMNPELSCTDA------SGKAAEFGLLKDGYMFETSTGLSRMLLSSP 174
GSL+ RV + + + EL+C D + K G L+ G++ + L+ + L+SP
Sbjct: 152 GSLVLCRVERMSAELGAELTCVDPNCKKSWTSKEKLLGELEGGFVIDVPPPLA-ISLASP 210
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
C +LE LG++L+FEIA G NGR+W+ + +L+ N ++
Sbjct: 211 HCFLLESLGERLAFEIAAGANGRIWIRTKEAGDAILIGNILV 252
>gi|397637852|gb|EJK72832.1| hypothetical protein THAOC_05596 [Thalassiosira oceanica]
Length = 436
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 116/246 (47%), Gaps = 53/246 (21%)
Query: 45 VSVIKAGKLRFSKPNKYW-VESSQKRYVPC---------------------VEDTVLGIV 82
V I AG+L + ++ W V S+ +RY V D V+G+V
Sbjct: 185 VKAIVAGRLIYRSSSRTWYVASNPRRYHLTQSPMASASLAKSTRGLTANVGVGDRVIGVV 244
Query: 83 V-DCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG--MNPEL 139
AD + V+I G A L VL+FEG T+RN P+ + G+LLY R+ K G M+ E+
Sbjct: 245 EGKASADYYRVNIFGSHSALLHVLSFEGATKRNRPQLDSGALLYCRITKGFGGGRMDSEV 304
Query: 140 SCT-----DASGKA---------------------AEFGLLKDGYMFETSTGLSRMLLSS 173
SC + +GKA +G L G F S GL+R LL
Sbjct: 305 SCKVGGSGNDTGKATYNEGADEDGGASAKDWMTNEGTYGALSGGTSFRVSLGLARELLL- 363
Query: 174 PTCPVLEELGKQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDK 232
P L L K + FEIAVG+NG VWVN+ P + + NAI NSE ++ Q + +V K
Sbjct: 364 PNNACLSALDKSGIPFEIAVGVNGMVWVNSSEPEITITILNAIKNSEVMNDEQIRGVVKK 423
Query: 233 LLQRIK 238
+++ K
Sbjct: 424 MVRNCK 429
>gi|365758515|gb|EHN00352.1| Rrp40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 240
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 18/214 (8%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSV----IKAGKLRFSKPNK-----YWVE 64
V PGD L IKLG G+ CD +S + G L S K +++
Sbjct: 4 FVFPGD---KLPVDPTVPIKLGPGIY--CDPISQEVRPVNTGILHVSTKGKGGVQAAYID 58
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIR--GPTIAFLPVLAFEGGTRRNIPKFEIGS 122
KRYVP V D V+G + +D++ V ++ P+++ L +AF +++N P ++G
Sbjct: 59 YFSKRYVPSVNDFVIGTISGTFSDSYKVSLQDFSPSVS-LSYMAFPNASKKNRPTLQVGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
L+Y RV A + E+ C D++ G+ A FG L+DG + + + +R LL + P+L+
Sbjct: 118 LVYARVCTAEKELEAEIECFDSTTGRDAGFGQLEDGTIIDVNLNFARQLLFNNDFPLLKV 177
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
L FE+A+GLNG++WV + S + I
Sbjct: 178 LAAHTKFEVAIGLNGKIWVKCKEVSNTLACYRTI 211
>gi|401838483|gb|EJT42098.1| RRP40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 18/214 (8%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSV----IKAGKLRFSKPNK-----YWVE 64
V PGD L IKLG G+ CD +S + G L S K +++
Sbjct: 4 FVFPGD---KLPVDPTVPIKLGPGIY--CDPISQEVRPVNTGILHVSTKGKGGVQAAYID 58
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIR--GPTIAFLPVLAFEGGTRRNIPKFEIGS 122
KRYVP V D V+G + +D++ V ++ P+++ L +AF +++N P ++G
Sbjct: 59 YFSKRYVPSVNDFVIGTISGTFSDSYKVSLQDFSPSVS-LSYMAFPNASKKNRPTLQVGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
L+Y RV A + E+ C D++ G+ A FG L+DG + + + +R LL + P+L+
Sbjct: 118 LVYARVCTAEKELEAEIECFDSTTGRDAGFGQLEDGTIIDVNLNFARQLLFNNDFPLLKV 177
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
L FE+A+GLNG++WV + S + I
Sbjct: 178 LAAHTKFEVAIGLNGKIWVKCKEVSNTLACYRTI 211
>gi|320034693|gb|EFW16636.1| exosome complex exonuclease Rrp40 [Coccidioides posadasii str.
Silveira]
Length = 261
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 132/253 (52%), Gaps = 30/253 (11%)
Query: 14 IVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSVI-----KAGKLRFSKPNKYWVE--- 64
I++PGD V L + +N ++KLG L + S I +AG L P + V
Sbjct: 6 ILLPGDTVPSHLKTASNNSLKLGQNLHVLSHATSPIPITSTQAG-LLLQDPKRNSVNILT 64
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSL 123
++RY+P D V+ + AD F + T FLP LAFEG TR+ P+ + G L
Sbjct: 65 FPRRRYIPQPSDLVIAQIHHSSADYFHCTLSPHTPHVFLPQLAFEGATRKTRPQLKSGEL 124
Query: 124 LYVRV--VKANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLLS---SPT 175
+Y RV V PG EL+C + A+GKA G L G +F+ S GL+ L+S S
Sbjct: 125 VYARVLSVGLGPGAEIELTCVNPATGKAEPGGLGPLNGGMVFDVSVGLAGRLMSPGGSGG 184
Query: 176 CPVLEELGKQL----SFEIAVGLNGRVWVNA-----ESPSTVVLVSNAI--MNSESLSAV 224
VLEELGK+L FEIAVG NGRVWV++ E +V V + ++ E+L
Sbjct: 185 VVVLEELGKKLESLGGFEIAVGKNGRVWVDSSAGGEEGIKMIVAVGRCLREVDEENLEVG 244
Query: 225 QQKIMVDKLLQRI 237
QK +V ++L+++
Sbjct: 245 GQKKLVSRVLKQM 257
>gi|410083256|ref|XP_003959206.1| hypothetical protein KAFR_0I02920 [Kazachstania africana CBS 2517]
gi|372465796|emb|CCF60071.1| hypothetical protein KAFR_0I02920 [Kazachstania africana CBS 2517]
Length = 236
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDS----VSVIKAG--KLRFSKPNKY-WVES 65
+++VPGD LD+ N + LG G+ CD + + AG ++ K + ++
Sbjct: 3 RLIVPGDK-LDIDLTKN--VSLGPGVY--CDPRTQIIQPVNAGIENIQVGKRGQIVHIDY 57
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
KRYVP V D V+GI+ AD++ V + + L +AF +++N P +IG L+
Sbjct: 58 DSKRYVPAVGDFVVGIITGAFADSYRVSLASFSSPVSLSYMAFPNASKKNRPTLKIGDLV 117
Query: 125 YVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y RV A + E+ C D++ G+++ FGLL+ G + + S +R LL P+L L
Sbjct: 118 YARVCTAEKELEAEIECVDSTTGQSSGFGLLEGGMVMDVSLKFARNLLFDEKFPLLRLLS 177
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN 217
+ FEIA+G+NG++W+ E + +I++
Sbjct: 178 QHCKFEIAIGVNGKIWIKTEDTKDTLACYKSILD 211
>gi|241948127|ref|XP_002416786.1| exosome complex component RRP40 [Candida dubliniensis CD36]
gi|223640124|emb|CAX44370.1| exosome complex exonuclease subunit, putative [Candida dubliniensis
CD36]
Length = 285
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 13/204 (6%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFSKPNKY------ 61
+ + I++PGD + ++ +G G+ ++ + +I AG L + +
Sbjct: 1 MSETIILPGDKLPIDEDISTVKTTIGPGIYKKPKTQELIPSTAGILHYERTKSSSSSSQQ 60
Query: 62 --WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKF 118
++ES+ KRY+P D V+G++ +++ V ++ T L AF +++N P
Sbjct: 61 LIYIESNSKRYIPHTNDYVIGVITGAIGESYKVSLQAYSTPVLLSFWAFPNASKKNRPNL 120
Query: 119 EIGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTC 176
+ G +Y RV + P + EL C D SGK FG+L + GY+F+ +R LL +P
Sbjct: 121 KNGQAVYARVSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFARELLFNPKT 180
Query: 177 PVLEELGKQLSFEIAVGLNGRVWV 200
LE L + FEIA+G+NG++W+
Sbjct: 181 IFLEMLATRCQFEIAIGINGKIWI 204
>gi|37781193|gb|AAP34304.1| Rrp40-like protein [Ogataea angusta]
Length = 156
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
+P V+D V+G +V + + V + T A L AF +++N PK + G L+Y RV
Sbjct: 1 MPAVQDFVVGTIVGSFGEFYRVSLSNFSTPAVLGFYAFPNASKKNRPKLKTGDLVYARVA 60
Query: 130 KANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
+P ++ EL C DA+ GK FG L+ G++FE +R LL PVL +L ++ F
Sbjct: 61 AVDPDLDVELECFDATTGKEGGFGHLEGGFVFEVRLAYARYLLRQQDAPVLTKLMRKYQF 120
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
E+A+G NGR+W+ +++ + AI +++
Sbjct: 121 ELAIGANGRIWIKSDTLPNTIECMKAIQRAQT 152
>gi|303310835|ref|XP_003065429.1| hypothetical protein CPC735_046540 [Coccidioides posadasii C735
delta SOWgp]
gi|240105091|gb|EER23284.1| hypothetical protein CPC735_046540 [Coccidioides posadasii C735
delta SOWgp]
Length = 341
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 136/263 (51%), Gaps = 28/263 (10%)
Query: 3 AKPSTANLVDKIVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSVI-----KAGKL-RF 55
A P + I++PGD V L + +N ++KLG L + S I +AG L +
Sbjct: 75 ATPGSTMSAPLILLPGDTVPSHLKTASNNSLKLGQNLHVLSHATSPIPITSTQAGLLLQD 134
Query: 56 SKPNKYWVESSQKR-YVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRR 113
K N + + +R Y+P D V+ + AD F + T FLP LAFEG TR+
Sbjct: 135 PKRNSVNILTFPRRCYIPQPSDLVIAQIHHSSADYFHCTLSPHTPHVFLPQLAFEGATRK 194
Query: 114 NIPKFEIGSLLYVRV--VKANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSR 168
P+ + G L+Y RV V PG EL+C + A+GKA G L G +F+ S GL+
Sbjct: 195 TRPQLKSGELVYARVLSVGLGPGAEIELTCVNPATGKAEPGGLGPLNGGMVFDVSVGLAG 254
Query: 169 MLLS---SPTCPVLEELGKQL----SFEIAVGLNGRVWVNA-----ESPSTVVLVSNAI- 215
L+S S VLEELGK+L FEIAVG NGRVWV++ E +V V +
Sbjct: 255 RLMSPGGSGGVVVLEELGKKLESLGGFEIAVGKNGRVWVDSSAGGEEGIKMIVAVGRCLR 314
Query: 216 -MNSESLSAVQQKIMVDKLLQRI 237
++ E+L QK +V ++L+++
Sbjct: 315 EVDEENLEVGGQKKLVSRVLKQM 337
>gi|50554611|ref|XP_504714.1| YALI0E33121p [Yarrowia lipolytica]
gi|49650583|emb|CAG80318.1| YALI0E33121p [Yarrowia lipolytica CLIB122]
Length = 295
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 21/244 (8%)
Query: 5 PSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQE---CDSVSVIKAGKLRFSKP--- 58
P+ + I +PGD + Q + LG G + D + ++ AG++ + P
Sbjct: 56 PAYHTIHTMICLPGDQI----DFPKQDLTLGPGFLDDPLAADPIPIV-AGEVHRTDPEDK 110
Query: 59 -----NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIR--GPTIAFLPVLAFEGGT 111
N +++S +RY+P V D V+G V A+ + V + P + L +AF +
Sbjct: 111 KTKNQNLVYIDSDTRRYIPAVNDNVIGTVTTRHAEGYKVSVSDLSPGVQ-LNAMAFPNAS 169
Query: 112 RRNIPKFEIGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRML 170
++N +L+Y RV A+ + E+ C D SGKA +G LKDG+ F+ +R L
Sbjct: 170 KKNRVNLANDALVYARVSSASREVEAEIECIDPQSGKAGGYGELKDGFCFDAPIAFTRQL 229
Query: 171 LSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMV 230
L VL+ +G+ + FEIA+G+NG++WV +E T + + I Q + V
Sbjct: 230 LFKGHT-VLDTIGELVPFEIAIGVNGKIWVKSEDVPTTLKIYQCIDKCREWPEDQVRENV 288
Query: 231 DKLL 234
++++
Sbjct: 289 EQIM 292
>gi|354544222|emb|CCE40945.1| hypothetical protein CPAR2_109830 [Candida parapsilosis]
Length = 302
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 19/205 (9%)
Query: 14 IVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFSKPNK-------YWV 63
IVVPGD + ++L S T K+G G+ +E S ++I AG L + + ++
Sbjct: 4 IVVPGDKLPIELPSSTTTKTKIGPGVYKEPKSQNLIPSTAGILHIDQRTQQQQQQQLLYI 63
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRG--PTIAFLPVLAFEGGTRRNIPKFEIG 121
ES+ KRY+P D V+G + D + V ++ P + L ++F +R+N P +G
Sbjct: 64 ESNTKRYIPQNNDFVIGTITGSMGDYYKVSLQNYSPPV-LLSFMSFPNASRKNRPNLNVG 122
Query: 122 SLLYVRVVK--ANPGMNPELSCTDASG--KAAEFGLLKD-GYMFE-TSTGLSRMLLSSPT 175
++Y RVV + EL C DAS ++ FG+L D G++ + + +R LL +P
Sbjct: 123 QVVYARVVNDDNDSTFETELECFDASNNRESGGFGILDDSGFVIDDVAMNFARELLFNPK 182
Query: 176 CPVLEELGKQLSFEIAVGLNGRVWV 200
VLE L ++ FEIAVG+NGR+W+
Sbjct: 183 SLVLEVLATRVQFEIAVGINGRIWI 207
>gi|378729640|gb|EHY56099.1| exosome complex exonuclease RRP40 [Exophiala dermatitidis
NIH/UT8656]
Length = 245
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 118/236 (50%), Gaps = 15/236 (6%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIK--AGKLRFS-KPNKYWVESSQKR 69
+IV+PG+ + T+Q K+G GL + +S S I G L+ + + + R
Sbjct: 5 QIVLPGEHIPATLIPTSQKRKIGHGLLPDPESDSFIATIGGLLQVDWRKKSAQISTPNAR 64
Query: 70 YVPCVEDTVLGIVVDCKADNF--FVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
Y+P D V+ D F +++ P A LP LAFEG T++ P+ + L+Y +
Sbjct: 65 YIPKPGDLVIAQFRASSTDFFHLYINPHSPQ-AILPQLAFEGATKKTRPQLKANDLVYAK 123
Query: 128 VVKANPGMNPELSCTDASGKAAE---FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
VV A M+ ELSC + S +E G L G +F+ S GL+ LL ++ELG
Sbjct: 124 VVSAQKNMDIELSCVNPSTGKSEPDGLGPLSGGMVFDVSPGLAERLLKKQNVLAMDELGS 183
Query: 185 QLS--FEIAVGLNGRVWVNAESPST--VVLVSNAI--MNSESLSAVQQKIMVDKLL 234
+L FEIAVG NG+VWV+ + V + ++ + +QK +V+K+L
Sbjct: 184 RLQGGFEIAVGKNGKVWVDCPEAGVRGICAVGRCLWELDEREMGEKEQKKLVNKIL 239
>gi|358254547|dbj|GAA55786.1| exosome complex component RRP40 [Clonorchis sinensis]
Length = 324
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133
V D V+G+V DN+ VDI + A L LAFEG +++N P G +LY V +A+
Sbjct: 150 VGDRVVGLVTRRVGDNYMVDIGCGSPATLNYLAFEGASKKNRPDLGPGDVLYAMVTQADR 209
Query: 134 GMNPELSCTDASGKAAEFGLL--------------KDGYMFETSTGLSRMLLSSPTCPVL 179
++ ELSC D +G+A+ G+L K G M S GL R L P L
Sbjct: 210 DLDIELSCVDEAGRASGMGILGRQEPGTVGNAGGMKGGVMLHCSPGLVRQLADQDNFPFL 269
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESL 221
L K FE+ +G NGR+W+ A S L++NAI ++ +
Sbjct: 270 TLLSKVFPFEVCLGANGRIWLTARSSRETTLLANAIAIADHI 311
>gi|453080068|gb|EMF08120.1| hypothetical protein SEPMUDRAFT_94870 [Mycosphaerella populorum
SO2202]
Length = 242
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 116/235 (49%), Gaps = 11/235 (4%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQECDSVSV-IKAGKLRFS-KPNKYWVESSQKR 69
+++PGD + L T+ LG LR S + +G L+ K + W+E R
Sbjct: 6 VLLPGDTIPPSLLPKSKKGTLTLGPHLRHLPPSTLLSTTSGTLQIDPKKSALWLEHPNGR 65
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P V D V+ V D F + T A L LAFEG ++ P+ + G L+Y RV
Sbjct: 66 YIPAVNDLVIAQVHHGSTDTFHCSLTPHTPYALLGHLAFEGANKKTRPQLKSGDLVYARV 125
Query: 129 VKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLL---SSPTCPVLEELGK 184
K + + E+ C ++ +GK G L G +F+ S G +R L+ +L+ +G+
Sbjct: 126 AKVSKWEDTEIECVNSNTGKGEGMGPLTGGMVFDVSAGFARRLMLGAKKGGVVILDVVGE 185
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQRI 237
++ FE+AVG NGRVW+++ S V + ++ ++ +Q+ V + L+ I
Sbjct: 186 KVKFEVAVGRNGRVWIDSASVRETVTIGRLLVAADEAGWDEERQRNEVKRALREI 240
>gi|410730431|ref|XP_003671395.2| hypothetical protein NDAI_0G03750 [Naumovozyma dairenensis CBS 421]
gi|401780213|emb|CCD26152.2| hypothetical protein NDAI_0G03750 [Naumovozyma dairenensis CBS 421]
Length = 253
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 118/225 (52%), Gaps = 17/225 (7%)
Query: 13 KIVVPGDVV-LDLSSMTNQTIKLGGGLRQECDSVSV--IKAGKLRFSKPNK-----YWVE 64
+++PGD + + + + + + LG GL + ++++ + AGKL ++ N ++
Sbjct: 11 HMILPGDSLPISETDLKSHRLVLGPGLYTDPKTLTIHPVNAGKLYITQNNNSNRINIHID 70
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSL 123
RY+P V D V+G +V AD++ V + + + L +AF +++N P +IG L
Sbjct: 71 YESHRYIPHVNDLVIGCIVGTFADSYKVSLNSFSNSVSLSYMAFPNASKKNRPTLKIGDL 130
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLS--RMLLSSPTCPVLEE 181
+Y +V A + + C ++ FGLL+DG + + STGL R+LL P+L
Sbjct: 131 VYCKVATAVKELEATVECLESG-----FGLLEDGMIID-STGLKFVRLLLFDDQFPLLRL 184
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQ 226
L + FEIA+G+NG++W+ A+ + +I++ +V Q
Sbjct: 185 LASRTKFEIAIGVNGKIWIKADEIKDTLACYRSILDCSMCQSVDQ 229
>gi|340519569|gb|EGR49807.1| predicted protein [Trichoderma reesei QM6a]
Length = 232
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 27/237 (11%)
Query: 15 VVPGDVVLDLS---SMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V+PGD + D S S + ++LG GLR D V + + + N VE++ R
Sbjct: 8 VLPGDRI-DASLIPSHEKKPLRLGPGLRHVPPSDLVPTLAGQLVTDRQKNAIRVETANGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y+P V + V+G V + +FV + T A LP L+FE T++ P G+L+Y R
Sbjct: 67 YIPRVGELVIGTVNKSAQEVYFVSLSDYTAPALLPQLSFESATKKTRPILLPGALVYARC 126
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VLEELG 183
V A+ +GKA G L G +F S G+SR+L+ VL+EL
Sbjct: 127 VSAS------------TGKADGLGPLVGGMLFTISLGMSRLLMMPKKAQQGRLVVLDELA 174
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQRI 237
+ FE A G NGR+WV+++S ++ V AI ++ SL +Q+ +V KL++ +
Sbjct: 175 DAGVQFETATGRNGRLWVDSDSTKAIIAVGRAIQETDEKSLGVDEQRRLVKKLIKEL 231
>gi|313240028|emb|CBY32387.1| unnamed protein product [Oikopleura dioica]
Length = 226
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 99/181 (54%), Gaps = 8/181 (4%)
Query: 29 NQTIKLGGGL-RQECD-SVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCK 86
++ I++G GL R D S+ V ++G ++ N W+E +++RY+P D VLG+V
Sbjct: 15 DENIRIGPGLKRNHYDGSIHVTESGIVK-GMNNMAWMEGARRRYIPVKGDLVLGVVTHKH 73
Query: 87 ADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDA-S 145
D VDI P +A L LAFE T+RN +G L++ +V A P + PE+ C + +
Sbjct: 74 PDYVRVDINAPELATLSTLAFESATKRNKIAINLGDLVFAKVSVALPDLEPEVVCCNMRT 133
Query: 146 GKAAEFGLLK---DGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNA 202
GKA G+++ + + +RM L SP C ++ +GK FE +G+NGRV +
Sbjct: 134 GKADGMGVIQPQSNSNSIVVNLQAARMAL-SPECAFVKAIGKHGPFEWCIGVNGRVLITT 192
Query: 203 E 203
+
Sbjct: 193 Q 193
>gi|358059506|dbj|GAA94663.1| hypothetical protein E5Q_01316 [Mixia osmundae IAM 14324]
Length = 301
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIG 121
W++S+ KRY P ++V+G V A+ + VDI A L LAF+G T+R+ P+ +G
Sbjct: 98 WIDSAGKRYNPSPSESVIGFVTYRGAEGYRVDIGASQPANLDALAFQGATKRSKPQLNLG 157
Query: 122 SLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMF-ETSTGLSRMLLSSPTCPVL 179
+ +Y RV A + PE+ C D + K+A FG L+ G + + R LL+ L
Sbjct: 158 AAVYARVSLAYAFVEPEIECYDPTTQKSAGFGELEGGMILRDVPLRKCRELLADKDA-AL 216
Query: 180 EELGKQLSFEIAVGLNGRVWV-NAESPSTVVL 210
ELGK++ FE+A+G+NGR+W+ A++ ST+ L
Sbjct: 217 SELGKKMPFELAIGVNGRIWLKGADTASTLEL 248
>gi|367008150|ref|XP_003678575.1| exosome complex component RRP40 [Torulaspora delbrueckii]
gi|359746232|emb|CCE89364.1| hypothetical protein TDEL_0A00320 [Torulaspora delbrueckii]
Length = 238
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNF-FVDIRGPTIAFLPVLAFEGGTRRNIPKFEI 120
+V+ KRY+P V D V+GI+V +D++ + L +AF +++N P ++
Sbjct: 54 YVDYDSKRYIPAVGDYVIGIIVGQFSDSYKVSLSSFSSSVTLSYMAFPNASKKNKPTLKV 113
Query: 121 GSLLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVL 179
G L+Y RV A + E+ C D++ G+ A FGLL+ G + + + G +R LL P+L
Sbjct: 114 GDLVYARVCAAEKELEAEIECLDSTTGQDAGFGLLEGGIVIDVTLGFARHLLFDKDFPLL 173
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ L FE+A+G+NG++WV E + +I++ + S + K + + I
Sbjct: 174 KILSSFTQFEVAIGVNGKIWVKCEEVKNTLACYRSIIDCQKTSVSEYKNTIKSHFKNI 231
>gi|302921030|ref|XP_003053201.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734141|gb|EEU47488.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 224
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 33/237 (13%)
Query: 14 IVVPGDVV--LDLSSMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V+PGD + + S + ++LG GLR D V I + + N VE+++ R
Sbjct: 7 FVLPGDNIDPSHIPSHPKKPLRLGPGLRHVPPNDIVPTIAGQLVTDRQKNAIRVENARGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y P V + V+G V A+ F+V + T A LP L+FEG T++ P+ G+L+Y R
Sbjct: 67 YTPRVGELVIGTVQRSAAEIFYVTLSDYTAPALLPQLSFEGATKKTRPQLVPGALVYAR- 125
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTC-----PVLEELG 183
A G L G +F S G++R L+ + VLEELG
Sbjct: 126 -------------------ADGLGPLTGGMLFNVSLGMARRLMMPKSVQEGRIAVLEELG 166
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQRI 237
L FE A G NG+ WV++ES TV+ V A+ ++ L QK +V K+++ +
Sbjct: 167 AAGLQFETATGRNGKFWVDSESTKTVIAVGRAVQETDEKRLDVEDQKKLVRKIIKEL 223
>gi|50285209|ref|XP_445033.1| exosome complex component RRP40 [Candida glabrata CBS 138]
gi|49524336|emb|CAG57933.1| unnamed protein product [Candida glabrata]
Length = 234
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 14/228 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECD----SVSVIKAGK---LRFSKPNKYWVESS 66
+V+PGD +L+ + + LG G+ CD +V + AG +K +VE +
Sbjct: 2 VVMPGD---ELALDQGKPVVLGPGVY--CDPQTQTVVPVNAGVPVVKESAKRQTVYVEYN 56
Query: 67 QKRYVPCVEDTVLGIVVDCKADNF-FVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
KRY+P V D V+G++ +D++ L +AF +++N P ++G L+Y
Sbjct: 57 SKRYIPSVGDLVIGVITSTFSDSYRVSLSSFSNSVSLSYMAFPNASKKNRPTLKVGDLVY 116
Query: 126 VRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
RV A + E+ C D++ G++A FGLL+ G + + + +R LL + P+L L K
Sbjct: 117 ARVSSAEKELEAEIECLDSTTGESAGFGLLEGGMVIDVTLAFARRLLFNDNFPLLLLLSK 176
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDK 232
+ FE+A+G+NG+VW+ + + +IM + Q K ++ +
Sbjct: 177 RTQFEVAIGVNGKVWIKCDEVKYTMACFRSIMKCQDQPVSQYKDIIKQ 224
>gi|256070166|ref|XP_002571415.1| mitochondrial carrier protein [Schistosoma mansoni]
gi|350645049|emb|CCD60231.1| mitochondrial carrier protein-related [Schistosoma mansoni]
Length = 645
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 75 EDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG 134
ED V+G+V+ ++F VDI + A L L+FEG +++N P G +LY + +A+
Sbjct: 472 EDKVIGVVMKKAGESFVVDIGCASPAILNYLSFEGSSKKNRPDIHAGDVLYAMITRADRD 531
Query: 135 MNPELSCTDASGKAAEFGLL--------------KDGYMFETSTGLSRMLLSSPTCPVLE 180
+ ELSC D +GKA G+L G + + L R L + P+L+
Sbjct: 532 LEIELSCVDEAGKACGMGILGRHEPGTVGNAGGRSGGILLHCTQDLVRRLCNQDEFPLLK 591
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
L K FEI +G NGR+W+ A S +++++NAI +E +SA +
Sbjct: 592 LLSKVYPFEIFLGANGRIWLTAGSAREIMILANAIAIAEHISASE 636
>gi|448520110|ref|XP_003868225.1| hypothetical protein CORT_0B10890 [Candida orthopsilosis Co 90-125]
gi|380352564|emb|CCG22790.1| hypothetical protein CORT_0B10890 [Candida orthopsilosis]
Length = 291
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 14/199 (7%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFSKPNKY-----WVESSQ 67
+VPGD L + ++ K+G G+ +E S ++I AG L ++ + ++ES+
Sbjct: 5 IVPGDK-LPIEDPSSTKTKIGPGIYKEPKSQNLIPSTAGILHINQNQQQNSQLVYIESNT 63
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIA-FLPVLAFEGGTRRNIPKFEIGSLLYV 126
KRY+P D V+G V D + V ++ + + L +AF +R+N P G ++Y
Sbjct: 64 KRYIPHNNDFVIGTVTGSIGDYYKVSLQNYSSSVLLSFMAFPNASRKNRPNLTNGQVVYA 123
Query: 127 RVVK--ANPGMNPELSCTDASG--KAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEE 181
RVV + EL C D S ++ FG+L D G++F+ + +R LL + PVLE
Sbjct: 124 RVVNDDNDSTFETELECFDGSNNRESGGFGILDDSGFVFDVAMNFARELLYNSKSPVLEL 183
Query: 182 LGKQLSFEIAVGLNGRVWV 200
L ++ FEIAVG+NG++W+
Sbjct: 184 LATRVQFEIAVGINGKIWL 202
>gi|363748747|ref|XP_003644591.1| hypothetical protein Ecym_2015 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888224|gb|AET37774.1| Hypothetical protein Ecym_2015 [Eremothecium cymbalariae
DBVPG#7215]
Length = 236
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 16/213 (7%)
Query: 14 IVVPGDVVLDLSSMTNQT-IKLGGGLRQECD----SVSVIKAGKLRFSKPNK---YWVES 65
+V+PGD + S+ N+ + LG G+ CD V + AG S K +V+
Sbjct: 4 LVIPGDKL----SINNEVPLSLGPGV--SCDPRSQEVRPVNAGLEVVSNTKKGQSLYVDY 57
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNF-FVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
+ KRY+P V D V+G+V +D++ + L +AF T++N P ++G L
Sbjct: 58 NSKRYLPSVGDYVIGLVTASFSDSYKVSLSSFSSSVVLSYMAFPNATKKNRPTLKVGDLC 117
Query: 125 YVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y RV A + E+ C D++ GK A FG+L+ G + E +R LL + P L L
Sbjct: 118 YARVCSAEKDLEAEIECVDSTTGKDAGFGILEGGAVVEVPLAFARELLFNNQYPFLPILA 177
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
+ + FE+A+GLNG++W+ + ST + AI
Sbjct: 178 QNIEFEVAIGLNGKIWIKTANLSTTLACYRAIQ 210
>gi|401887143|gb|EJT51147.1| endoplasmic reticulum protein [Trichosporon asahii var. asahii CBS
2479]
Length = 1111
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 57 KPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIP 116
K W+ KRY+P D VLG ++ A+ + VD+ +A L LAFEG T+R
Sbjct: 59 KSESVWISGKSKRYIPAQRDLVLGTIIARHAEGYRVDLGSAHMASLDALAFEGATKR--- 115
Query: 117 KFEIGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLSRMLLSSPT 175
+ P + PE+ C D A+GKA FG LK G M E S L R P
Sbjct: 116 --------------SKPNLKPEIECVDPATGKAEGFGELKGGLMVECSLQLCR----HPK 157
Query: 176 CPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
P+L L + FE A+GLNGRVW E + + I ++ K +DK ++
Sbjct: 158 HPLLPALAAHIPFETAIGLNGRVWFKTEQVGQTIALRRVIEAVDAGEIEMDKSSIDKAVK 217
Query: 236 R 236
+
Sbjct: 218 Q 218
>gi|67469469|ref|XP_650713.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56467363|gb|EAL45326.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 233
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 13/218 (5%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYV 71
K V PGD + Q + G G+ + +V +AG L++ + KY+ V S K+Y
Sbjct: 11 KTVFPGDTFEYV-----QGARFGDGIIKRNGVPTVSRAGILKYQQQTKYYHVFSDLKKYH 65
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV-K 130
P VED +G +V D + VDI A L LAFE T+++ P G +Y RVV K
Sbjct: 66 PSVEDVCVGKIVKRVKDKYLVDIGSYCYAELDFLAFENATKKSKPNLLDGDYVYCRVVSK 125
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
N P++ C FG L+ G+ F + R ++ C VL +G+ FEI
Sbjct: 126 ENV---PQVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMGDGCC-VLTCIGEYTPFEI 181
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKI 228
AVG+NG VWV + V+V + I+ + L V++ +
Sbjct: 182 AVGINGMVWVRTPNVLNDVIVESCIV--QCLGVVEKNV 217
>gi|449703223|gb|EMD43711.1| exosome complex exonuclease RRP40, putative [Entamoeba histolytica
KU27]
Length = 233
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 13/218 (5%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYV 71
K V PGD + Q + G G+ + +V +AG L++ + KY+ V S K+Y
Sbjct: 11 KTVFPGDTFEYV-----QGARFGDGIIKRNGVPTVSRAGILKYQQQTKYYHVFSDLKKYH 65
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV-K 130
P VED +G +V D + VDI A L LAFE T+++ P G +Y RVV K
Sbjct: 66 PSVEDVCVGKIVKRVKDKYLVDIGSYCYAELDFLAFENATKKSKPNLLDGDYVYCRVVSK 125
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
N P++ C FG L+ G+ F + R ++ C VL +G+ FEI
Sbjct: 126 ENV---PQVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMGDGCC-VLTCIGEYTPFEI 181
Query: 191 AVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKI 228
AVG+NG VWV + V+V + I+ + L V++ +
Sbjct: 182 AVGINGMVWVRTPNVLNDVIVESCIV--QCLGVVEKNV 217
>gi|449302167|gb|EMC98176.1| hypothetical protein BAUCODRAFT_67161 [Baudoinia compniacensis UAMH
10762]
Length = 241
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 15 VVPGDVVLD--LSSMTNQTIKLGGGLRQECDS-VSVIKAGKLRF-SKPNKYWVESSQKRY 70
++PG+ V L T+ LG GLR S +S G L+ K W+E RY
Sbjct: 6 LIPGEEVPSDRLPKAKKGTLTLGPGLRHILPSTISATTPGVLQVDHKKAAVWLEYPNGRY 65
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
P V D V+ + ++ + + T A L LAFEG ++ P+ + G ++Y RV
Sbjct: 66 QPSVGDLVVAQIHHSTSEAYSCIVTPHTPFALLGQLAFEGANKKTRPQLKAGDMVYARVS 125
Query: 130 KANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLL---SSPTCPVLEELGKQ 185
+A+ EL C AS GKA G LK G +F+ S +R L+ VL+E+G++
Sbjct: 126 RASKYEETELECVSASTGKADGMGPLKGGMVFDVSPSFARRLMMGNGKGGVIVLDEVGEK 185
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNS--ESLSAVQQKIMVDKLLQ 235
FE+AVG NGR+W+++ S + + + + + E QK V KL++
Sbjct: 186 ARFEVAVGRNGRLWLDSGSVAVTIGIGRLLQQTDEEGWDVEAQKKAVRKLVK 237
>gi|313236852|emb|CBY12103.1| unnamed protein product [Oikopleura dioica]
Length = 226
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 8/181 (4%)
Query: 29 NQTIKLGGGL-RQECD-SVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCK 86
++ I++G GL R D S+ V ++G ++ N W+E +++RY+P D VLG+V
Sbjct: 15 DENIRIGPGLKRNHYDGSIHVTESGIVK-GMNNMAWMEGARRRYIPVKGDLVLGVVTHKH 73
Query: 87 ADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDA-S 145
D VDI P +A L LAFE T+RN +G L++ +V A P + PE+ C + +
Sbjct: 74 PDYVRVDINAPELATLSTLAFESATKRNKIAINLGDLVFAKVSVALPDLEPEVVCCNMRT 133
Query: 146 GKAAEFGLLK---DGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNA 202
GKA G+++ + + +RM L SP C + +GK FE +G+NGRV +
Sbjct: 134 GKADGMGVIQPQSNSNSIVVNLQAARMAL-SPECAFGKAIGKHGPFEWCIGVNGRVLITT 192
Query: 203 E 203
+
Sbjct: 193 Q 193
>gi|444322370|ref|XP_004181828.1| hypothetical protein TBLA_0H00160 [Tetrapisispora blattae CBS 6284]
gi|387514874|emb|CCH62309.1| hypothetical protein TBLA_0H00160 [Tetrapisispora blattae CBS 6284]
Length = 240
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 12/199 (6%)
Query: 13 KIVVPGDVVLDLSSMTNQTIK--LGGGLRQECDS--VSVIKAG---KLRFSKPNKYWVES 65
+IV+PGD+ LS TN+ + LG G+ ++ + ++ + AG + K ++
Sbjct: 4 RIVLPGDL---LSVTTNEELPVLLGPGVVEDPQTQIITPVNAGIEVVTQTRKATTINIDY 60
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLL 124
RY+P V D V+GI+ D++ V + + L +AF T++N P ++G L+
Sbjct: 61 DSTRYIPAVGDYVIGIITGAFGDSYKVSLASFSNGVSLSYMAFPNATKKNRPTLKVGDLV 120
Query: 125 YVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
Y RV A + E+ C D++ GK FG L G + + + +R LL + +L+ L
Sbjct: 121 YARVCSAEKELEAEIECVDSTTGKDTGFGHLAGGMVIDVTLSFARNLLFNNDSSMLKILA 180
Query: 184 KQLSFEIAVGLNGRVWVNA 202
K FEIA+G+NG++WV A
Sbjct: 181 KHTQFEIAIGVNGKIWVKA 199
>gi|167389389|ref|XP_001738942.1| exosome complex exonuclease RRP40 [Entamoeba dispar SAW760]
gi|165897609|gb|EDR24707.1| exosome complex exonuclease RRP40, putative [Entamoeba dispar
SAW760]
Length = 233
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYV 71
K V PG+ + Q + G G+ + ++ +AG L++ + KY+ V S K+Y
Sbjct: 11 KTVFPGETFEYV-----QGARFGDGIIKRNGVPTISRAGILKYQQQTKYYHVFSDLKKYH 65
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
P +ED +G +V D + VDI A L LAFE T+++ P G +Y RVV
Sbjct: 66 PSIEDVCVGKIVKRVKDKYLVDIGSYCYAELDFLAFENATKKSKPNLLDGDYVYCRVVSK 125
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIA 191
P++ C FG L+ G+ F + R ++S C VL +G+ FEIA
Sbjct: 126 EK--VPQVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMSDGCC-VLTCIGQYTPFEIA 182
Query: 192 VGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKI 228
VG+NG VWV + V+V + I+ + L V++ +
Sbjct: 183 VGVNGMVWVRTPNVLNDVIVESCIL--QCLGVVEKNV 217
>gi|255070405|ref|XP_002507284.1| predicted protein [Micromonas sp. RCC299]
gi|226522559|gb|ACO68542.1| predicted protein [Micromonas sp. RCC299]
Length = 235
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 2/185 (1%)
Query: 32 IKLGGGLRQ-ECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNF 90
K+G +R +C +S I +G L+ VE RY P D+VLG ++D AD F
Sbjct: 34 FKIGERIRHHDCYLISTI-SGTLKDRDGFSLSVEGPTHRYCPASGDSVLGCIIDIHADGF 92
Query: 91 FVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAE 150
+ ++A LP + F GT+++ PK +IG+L++ RV N L+C +
Sbjct: 93 SMSTGSSSLAALPRVQFSVGTKQSRPKLKIGALVHARVQGVNHLGEVALTCVEEMHDVRG 152
Query: 151 FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVL 210
G+L +G+ ++ +R + S VL LG +SFEIA G NGRVW+ + +L
Sbjct: 153 LGVLTEGFFPRCNSKFARNMQSRSFETVLGILGSAVSFEIATGHNGRVWIATSTRQQAIL 212
Query: 211 VSNAI 215
+ A+
Sbjct: 213 IVKAL 217
>gi|398388107|ref|XP_003847515.1| hypothetical protein MYCGRDRAFT_88378 [Zymoseptoria tritici IPO323]
gi|339467388|gb|EGP82491.1| hypothetical protein MYCGRDRAFT_88378 [Zymoseptoria tritici IPO323]
Length = 249
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 119/239 (49%), Gaps = 17/239 (7%)
Query: 14 IVVPGDVV---LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK--YWVESSQK 68
I++PGD V L T+ LG GLR S + + P K W+E
Sbjct: 6 ILLPGDTVPSALLPPPTKKGTLTLGPGLRHIPPSTILTTTSGTLHTDPKKSALWLEHPHG 65
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127
RY+P V D V+ + D + + T A L L+FEG ++ P+ + G L+Y R
Sbjct: 66 RYLPSVNDLVIAQIHHSSTDVYHCRLSPHTPYALLGQLSFEGANKKTRPQLKSGDLVYAR 125
Query: 128 VVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSRMLL--------SSPTCPV 178
V KA+ + E+ C ++ SGKA G L G +F+ S G +R L+ S V
Sbjct: 126 VCKASKWEDVEIECVNSNSGKAEGMGPLTGGMVFDVSPGFARRLMMGTTKDGKSVGGVVV 185
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMVDKLLQ 235
LEE+G+++ FE+AVG NGRVWV++ S V + + ++ L +Q+ +V ++L+
Sbjct: 186 LEEVGEKVRFEVAVGRNGRVWVDSGSVRETVAIGRLLRETDEGGLGVEEQRKLVKRVLR 244
>gi|255730389|ref|XP_002550119.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132076|gb|EER31634.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 270
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-------YWVESS 66
I+ PGD L + +T+ +G G+ ++ + +I + F K + ++ES+
Sbjct: 6 IITPGDN-LPIEDITSVKTTIGPGIYKKPKTQELIPSTSGIFHKISNNSKNSQLIYIESN 64
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIA-FLPVLAFEGGTRRNIPKFEIGSLLY 125
KRY+P D V+G+++ +N+ V ++ +I L +F +++N P + G L+Y
Sbjct: 65 SKRYIPHNNDFVIGLIIGTIGENYKVSLQANSIPILLGFYSFVNASKKNRPILKNGDLVY 124
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTCPVLEELGK 184
R++ ++ E+ C D+SGK + FGLL D G++F+ + +R LL + LE L
Sbjct: 125 GRIINDIIEIDNEMECIDSSGKESGFGLLDDSGFLFDVNMNFARELLFNKNSIFLELLAL 184
Query: 185 QLSFEIAVGLNGRVWV 200
+ FEIA+G+NG++W+
Sbjct: 185 KCKFEIAIGINGKIWI 200
>gi|330920519|ref|XP_003299040.1| hypothetical protein PTT_09951 [Pyrenophora teres f. teres 0-1]
gi|311327455|gb|EFQ92873.1| hypothetical protein PTT_09951 [Pyrenophora teres f. teres 0-1]
Length = 239
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 121/234 (51%), Gaps = 11/234 (4%)
Query: 14 IVVPGDVV----LDLSSMTNQTIKLGGGLRQEC-DSVSVIKAGKL-RFSKPNKYWVESSQ 67
+V+PGD + L + +T+ LG GLR D+V+ AG L +K N VES+
Sbjct: 5 VVLPGDDIPKSALPTGTGKKKTLTLGPGLRHTPPDTVTATIAGALVTDNKKNAASVESNT 64
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY P D V+ V A+NF + T A LP LAFEG T++ P+ SL+Y
Sbjct: 65 GRYRPFTGDLVIATVNGSAAENFNCLLTPNTPAATLPHLAFEGATKKTRPQLPPNSLVYC 124
Query: 127 RVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLS-RMLLSSPTCPVLEELGK 184
RV A + EL+C D A+GK GLLK G +F S G++ RML + +L+ +G
Sbjct: 125 RVASAGKDLPSELTCVDPATGKGEGLGLLKGGMVFSVSLGMARRMLAARGGITLLQTMGA 184
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQR 236
+L FE+ VG NG V V+ + T + + AI ++ +L QK + L+
Sbjct: 185 KLGFEVTVGRNGLVHVDGGNVKTTLAIGQAIQEVDRAALGDEAQKKLAAATLKH 238
>gi|189202700|ref|XP_001937686.1| exosome complex exonuclease RRP40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984785|gb|EDU50273.1| exosome complex exonuclease RRP40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 239
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 121/234 (51%), Gaps = 11/234 (4%)
Query: 14 IVVPGDVV----LDLSSMTNQTIKLGGGLRQEC-DSVSVIKAGKL-RFSKPNKYWVESSQ 67
IV+PGD + L + +T+ LG GLR D+V+ AG L +K N VES+
Sbjct: 5 IVLPGDDISKSALPTGTGKKKTLTLGPGLRHTPPDTVTATIAGALVTDNKKNAASVESNT 64
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYV 126
RY P D V+ V A+NF + T A LP LAFEG T++ P+ SL+Y
Sbjct: 65 GRYRPFTGDLVIATVNGSAAENFNCLLTPNTPAVTLPHLAFEGATKKTRPQLPPNSLVYC 124
Query: 127 RVVKANPGMNPELSCTD-ASGKAAEFGLLKDGYMFETSTGLS-RMLLSSPTCPVLEELGK 184
R+ A + EL+C D A+GK GLLK G +F S G++ RML + +L+ +G
Sbjct: 125 RIASAGKDLPSELTCVDPATGKGEGLGLLKGGMVFNVSLGMARRMLAARGGITLLQTMGA 184
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAI--MNSESLSAVQQKIMVDKLLQR 236
+L FE+ VG NG V V+ + T + + AI ++ +L QK + L+
Sbjct: 185 KLGFEVTVGRNGLVHVDGGNVKTTLAIGQAIQEVDRAALGDEAQKKLAAATLKH 238
>gi|46128535|ref|XP_388821.1| hypothetical protein FG08645.1 [Gibberella zeae PH-1]
Length = 223
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 32/230 (13%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
V+PGD + + S + ++LG GLR D + + + + N VE+++ R
Sbjct: 7 FVLPGDSIDPSLIPSHPKKPLRLGPGLRHVPPNDIIPTLAGQLVTDRQKNAIRVENARGR 66
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
Y P V + V+G + AD FFV + T A LP L+FEG T++ P+ G+L+Y R
Sbjct: 67 YTPRVGELVIGTIQRSAADFFFVTLSDYTAPAQLPQLSFEGATKKTRPQLAAGALVYAR- 125
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VLEELG 183
K+ G L G ++ S G++R L+ + VLEELG
Sbjct: 126 ------------------KSEGLGPLAGGMLYNVSLGMARRLMMPKSVQEGRVVVLEELG 167
Query: 184 KQ-LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE--SLSAVQQKIMV 230
L FE A G NG+ WV++E+ TV+ V A+ ++ +L QK ++
Sbjct: 168 NAGLQFETATGRNGKFWVDSENVKTVIAVGRAVQETDEKNLDVEDQKKLI 217
>gi|300122352|emb|CBK22924.2| unnamed protein product [Blastocystis hominis]
Length = 109
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 8/105 (7%)
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAAE-------FGLLKDGYMFETSTGLSRMLLSS 173
G L+Y RV++A PGM +L+CT A+G +E FG LKDGY+F+ S +R LL
Sbjct: 5 GCLVYCRVLQALPGMAAQLTCTVANGPRSEWVNGASLFGELKDGYVFKISVTQARQLLD- 63
Query: 174 PTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNS 218
P C +L+ +G Q+ +E A+GLNG VWVN+ + ++ +SN I+NS
Sbjct: 64 PGCDILQTIGSQIPYECAIGLNGFVWVNSGDANKIITISNTILNS 108
>gi|388857868|emb|CCF48533.1| related to RRP40-protein involved in ribosomal RNA processing,
component of the exosome complex [Ustilago hordei]
Length = 291
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 37/240 (15%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVS-------VIKAGKL------------R 54
+V+PGD++ S + IKLG GL + S I+ G L +
Sbjct: 3 VVLPGDII---SIASTSAIKLGPGLLPTSSTSSSNTPSLTAIRTGALGHIPSSSSSITKK 59
Query: 55 FSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN 114
+ +WVE++ RYVP D V+ + + ++++ + + A LP L+FEG T+R+
Sbjct: 60 KDPESAFWVETNTSRYVPAPGDPVIAQITNRGSESYTLTLFSSHSATLPALSFEGATKRH 119
Query: 115 IPKFEIGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKD----------GYMFETS 163
P IGSL+Y R++ A+ PEL+C + +GK+ FG LK +F +
Sbjct: 120 KPNLRIGSLVYARILTADRFTEPELTCVNPVTGKSDGFGDLKTTDERGEKNGVAMLFRVT 179
Query: 164 TGLSRMLLSSPTCPVLEELGKQLS----FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
GL++ LL+ E L K ++ FE AVG NG VWV A V+ + + +E
Sbjct: 180 LGLAKTLLAGKGGRGGEGLLKLVAAVFPFEAAVGANGVVWVRANETRHVLALGKVLYAAE 239
>gi|344304481|gb|EGW34713.1| exosome complex exonuclease RRP40 [Spathaspora passalidarum NRRL
Y-27907]
Length = 257
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFV---DIRGPTIAFLPVLAFEGGTRRNIPKF 118
++ES+ KRY+P D V+G+V +++ V D P + L +AF T++N P
Sbjct: 56 YIESNNKRYIPHTNDFVIGVVTGVVGESYKVQLQDFSSPVL--LGFMAFPNATKKNRPNL 113
Query: 119 EIGSLLYVRVVKANPGMNPELSCTD-ASGKAAEFGLLKD-GYMFETSTGLSRMLLSSPTC 176
+IGS +Y RV++ P + EL C D +GK FGLL + GY+F+ +R LL +P
Sbjct: 114 KIGSAVYARVLQDIPEIEAELECIDPTTGKEGGFGLLDESGYIFDVELNFARELLFNPKT 173
Query: 177 PVLEELGKQLSFEIAVGLNGRVWV 200
L+ L + FEIA+G+NG++W+
Sbjct: 174 VFLQLLSTKCQFEIAIGINGKIWI 197
>gi|357610134|gb|EHJ66842.1| exosome complex exonuclease Rrp40 [Danaus plexippus]
Length = 122
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVL 179
+G ++Y +++ A+ M PEL C D+ GK G+L DG++F+ S L R +L+ P+CP+L
Sbjct: 1 MGDIVYAKMLVASKDMEPELVCVDSHGKKGRLGVLSDGFLFKCSLNLVRKILN-PSCPLL 59
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
E L + FE+A G+NGR+W+ A S + + NAI+ +E S + K++ +
Sbjct: 60 ESLKNEWPFEMAAGMNGRIWIKANSMRETIALGNAILGAEYQSDEEIKLICSNI 113
>gi|156088283|ref|XP_001611548.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798802|gb|EDO07980.1| conserved hypothetical protein [Babesia bovis]
Length = 207
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPKFEIGSLLYVRV 128
Y P + D V+G+VV +D + +DI G T A LP + F G T+RN P G +++ ++
Sbjct: 33 YRPKIGDHVIGVVVAKNSDFYSLDIGGLTEAILPAVDGFRGATKRNRPNINEGDVIFCQI 92
Query: 129 VKANPG--MNPELSCTDA------SGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLE 180
K P + E+SC D + K FG L+ G+MF S LS C VLE
Sbjct: 93 TKQYPRNELPVEVSCLDVDDMKQWTTKETYFGSLEGGFMFSVPIPYS-YCLSGARCHVLE 151
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIM 229
+ + +EIAVGLNGRVW+ + + +L++ I LS Q + +
Sbjct: 152 KCAGRFKYEIAVGLNGRVWIKSTNEVDTILIARYIRMCFGLSLAQTEAL 200
>gi|366992039|ref|XP_003675785.1| hypothetical protein NCAS_0C04310 [Naumovozyma castellii CBS 4309]
gi|342301650|emb|CCC69421.1| hypothetical protein NCAS_0C04310 [Naumovozyma castellii CBS 4309]
Length = 247
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 21/240 (8%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVI--KAGKLRFSKPNKY----WVESSQ 67
+V+PGD + S + + LG G+ + +I +AG + P + +V+
Sbjct: 7 VVLPGDKLPLSPSSSQSALTLGPGIYCNPQTHEIIPTQAGIAHITHPKPHRTQLYVDYDS 66
Query: 68 KRYVPCVEDTVLGIVVDCKA-DNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
KRY+PCV D V+G +V + D++ V + LP +AF +++N P G L+Y
Sbjct: 67 KRYIPCVGDLVIGCIVGTQGGDSYRVSLSNFSNDVSLPYMAFPNASKKNRPTLVKGDLVY 126
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLL--------SSPTCP 177
+V A + L C D FG+L+DG + + +RMLL T
Sbjct: 127 AKVASAEKELEATLECLDPG-----FGILEDGMVLDCPLRFARMLLFEGDDKQKKEGTSS 181
Query: 178 VLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+L L + FEIA+G+NG++W+ ++ S + ++ Q +V + + +
Sbjct: 182 LLRLLARHTKFEIAIGINGKIWIKCDTVSDTLACYRIVLECCKSPVSQYDSIVKRHFKEV 241
>gi|118353987|ref|XP_001010258.1| hypothetical protein TTHERM_01050590 [Tetrahymena thermophila]
gi|89292025|gb|EAR90013.1| hypothetical protein TTHERM_01050590 [Tetrahymena thermophila
SB210]
Length = 249
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 8/178 (4%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGS 122
V++ ++Y V+D V+G++ + + VDI A L FEG T++N P GS
Sbjct: 66 VKAYAQKYYAEVDDYVIGVIKGRVQEYYLVDIGAQEDALLSFYGFEGATKKNRPNLRDGS 125
Query: 123 LLYVRVVKANPGMNPELSCTDASGKA------AEFGLLKDGYMFETSTGLSRMLLSSPTC 176
L++ RV +AN M ++ C K + FG LKDG + S +R ++
Sbjct: 126 LIFCRVTEANKYMKIKVDCIHPKIKKQWMTGESFFGQLKDGMVSNISIEYARSIIGQGDF 185
Query: 177 PVLEELGKQL-SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
V K + SFE A+G NG+VW+ P +L+ N + E++S Q K+ VD++
Sbjct: 186 -VFRAFKKYIKSFETAIGSNGKVWIKTLQPQNTILILNVLNKCENMSIEQIKVYVDQI 242
>gi|413950818|gb|AFW83467.1| hypothetical protein ZEAMMB73_643656 [Zea mays]
Length = 66
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 47/51 (92%)
Query: 135 MNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQ 185
MNP LSC DA+GKAAEFG LKDGYMF+TSTG+SRMLLS+PTCPVLE LGK+
Sbjct: 1 MNPGLSCRDATGKAAEFGQLKDGYMFDTSTGMSRMLLSTPTCPVLEALGKK 51
>gi|403349194|gb|EJY74038.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Oxytricha trifallax]
Length = 270
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RY P D V+G V+ + F +DI + A L L F+ TR++ P++ G+L+Y RV
Sbjct: 94 RYTPQENDVVIGTVIQKSPEFFTIDINSESYAQLSTLEFQNSTRKDRPQYPEGTLIYCRV 153
Query: 129 VKANPGMNPELSCTDASGKA------AEFGLLKDGYMFETSTGLSRMLLSSPTCP-VLEE 181
++ P+LSC + K A FG L +G++ + R LL++ + +L++
Sbjct: 154 LRCEKFSKPQLSCISLTHKKAWNSGEAYFGNLTEGFVKDFPIAFCRQLLANSSSEGILDK 213
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
LG+++ ++I +G NG++WV + + A+
Sbjct: 214 LGERIQYDINIGYNGKIWVKTAKIQETIFIFQAL 247
>gi|56758880|gb|AAW27580.1| SJCHGC05501 protein [Schistosoma japonicum]
Length = 324
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 75 EDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG 134
ED V+GIV+ + F VDI + A L L+FEG +++N P G +LY + +A+
Sbjct: 151 EDKVIGIVLKKAGELFVVDIGCASPATLNYLSFEGSSKKNRPDIHAGDVLYAMITRADRD 210
Query: 135 MNPELSCTDASGKAAEFGLLK--------------DGYMFETSTGLSRMLLSSPTCPVLE 180
+ ELSC D +GKA G+L G + + L R L + P+L+
Sbjct: 211 LEIELSCVDETGKACGMGILGRHEPGTVGNAGGRPGGVLLYCTQDLIRRLGNQDEFPLLK 270
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
L K FEI G NGR+W+ + S ++++NAI SE + A +
Sbjct: 271 LLSKVYPFEIFFGANGRIWLTSGSTRETMILANAIAISEHIPASE 315
>gi|302497443|ref|XP_003010722.1| hypothetical protein ARB_03424 [Arthroderma benhamiae CBS 112371]
gi|291174265|gb|EFE30082.1| hypothetical protein ARB_03424 [Arthroderma benhamiae CBS 112371]
Length = 271
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 106/197 (53%), Gaps = 29/197 (14%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT--IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+PC D ++ + D FF I P AFL LAFEG T++ P+ + G L+Y
Sbjct: 72 RYIPCQNDLIIAQIHHSSPD-FFHCIISPNSPHAFLGQLAFEGATKKTRPQLKAGELVYA 130
Query: 127 RV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGL-SRMLLSSP-----T 175
R+ V G EL+C + A+GKA GL L G MF+ ST SR++++ P
Sbjct: 131 RILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMMFDVSTLFASRLMMTGPERKDGA 190
Query: 176 CP----VLEELGKQL----SFEIAVGLNGRVWVNAESPSTV-VLVSNAI------MNSES 220
P VLEELG++ FEIAVG NG+VWV++ + V V++ AI + +
Sbjct: 191 GPGGVIVLEELGRKFESYGGFEIAVGRNGKVWVDSSAEGDVGVMMVVAIGRCLRETDEKR 250
Query: 221 LSAVQQKIMVDKLLQRI 237
L V+QK +V ++L+ +
Sbjct: 251 LDFVEQKKLVLRVLKEM 267
>gi|327308640|ref|XP_003239011.1| exosome complex exonuclease Rrp40 [Trichophyton rubrum CBS 118892]
gi|326459267|gb|EGD84720.1| exosome complex exonuclease Rrp40 [Trichophyton rubrum CBS 118892]
Length = 271
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 29/197 (14%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT--IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+PC D ++ + D FF I P AFL LAFEG T++ P+ + G L+Y
Sbjct: 72 RYIPCQNDLIIAQIHHSSPD-FFHCIISPNSPHAFLGQLAFEGATKKTRPQLKAGELVYA 130
Query: 127 RV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGL-SRMLLSSPT----- 175
R+ V G EL+C + A+GKA GL L G +F+ ST SR++++ P
Sbjct: 131 RILSVGVGAGGEVELTCVNPATGKAEPDGLGSLHGGMVFDVSTLFASRLMMTGPERKDGA 190
Query: 176 ----CPVLEELGKQL----SFEIAVGLNGRVWVNAESPSTV-VLVSNAI------MNSES 220
VLEELG++ FEIAVG NG+VWV++ + V V++ AI + +
Sbjct: 191 GPGGVIVLEELGRKFESYGGFEIAVGRNGKVWVDSSAEGDVGVIMVVAIGRCLRETDEKR 250
Query: 221 LSAVQQKIMVDKLLQRI 237
L V+QK +V ++L+ I
Sbjct: 251 LDVVEQKKLVLRVLKEI 267
>gi|326474844|gb|EGD98853.1| exosome complex exonuclease Rrp40 [Trichophyton tonsurans CBS
112818]
gi|326477834|gb|EGE01844.1| exosome complex exonuclease RRP40 [Trichophyton equinum CBS 127.97]
Length = 271
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 29/197 (14%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT--IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+PC D ++ + D FF I P AFL LAFEG T++ P+ + G L+Y
Sbjct: 72 RYIPCQNDLIIAQIHHSSPD-FFHCIISPNSPHAFLGQLAFEGATKKTRPQLKAGELVYA 130
Query: 127 RV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGL-SRMLLSSP-----T 175
R+ V G EL+C + A+GKA GL L G +F+ ST L SR++++ P
Sbjct: 131 RILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMVFDVSTLLASRLMMTGPERKDGA 190
Query: 176 CP----VLEELGKQL----SFEIAVGLNGRVWVNAESPSTV-VLVSNAI------MNSES 220
P VLEELG++ FEIAVG NG+VWV++ + V V++ AI + +
Sbjct: 191 GPGGVIVLEELGRKFESYGGFEIAVGKNGKVWVDSSAEGDVGVMMVVAIGRCLKETDEKR 250
Query: 221 LSAVQQKIMVDKLLQRI 237
L V+QK +V ++L+ +
Sbjct: 251 LDVVEQKKLVLRVLKEM 267
>gi|195641812|gb|ACG40374.1| hypothetical protein [Zea mays]
Length = 72
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 44/60 (73%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR 69
LVD V PGDVVLDL M NQTIK G GL QECD++ AGKLR KPNKYW+E+S KR
Sbjct: 11 LVDSYVAPGDVVLDLCEMNNQTIKFGAGLFQECDTIQATSAGKLRLLKPNKYWIENSHKR 70
>gi|388581015|gb|EIM21326.1| hypothetical protein WALSEDRAFT_18961, partial [Wallemia sebi CBS
633.66]
Length = 171
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
+Y+ D+V+G V+ ++ + VDI T A L LAFEG T+RN P ++GSL+Y R+
Sbjct: 1 QYLARTGDSVIGQVIFRGSEGYRVDIGTATTANLDALAFEGATKRNKPNLKVGSLVYARI 60
Query: 129 VKANPGMNPELSCTD-ASGKAAEFGLLKDGYM---FETSTGLSRMLLSSPTCPVLEELGK 184
A+ M EL C + +GKA +G LK G + + + S + +SP L + G
Sbjct: 61 SLAHKDMETELECLNPTTGKAEGYGELKGGILADNLDINKCKSLLEKNSPFMNTLMQ-GF 119
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
FE+A +NG++W++A S S + V IM ++
Sbjct: 120 GFPFELATAMNGKIWISAPSTSQTISVYRTIMKAD 154
>gi|358368706|dbj|GAA85322.1| exosome complex exonuclease Rrp40 [Aspergillus kawachii IFO 4308]
Length = 278
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 30/205 (14%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEI 120
+ + +RY+P V D V+ V D F I + P A L L+FEG T++ P +
Sbjct: 72 LSTPNRRYIPTVNDLVIAQVHHSSVDYFHCMITPQAPH-AVLGQLSFEGATKKTRPMLKQ 130
Query: 121 GSLLYVRV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGLSRMLLSSPT 175
G L+Y RV V G EL+C + A+GKA GL L G +F+ STG++ L+ + +
Sbjct: 131 GDLVYARVLSVGLGAGAEVELACVNPATGKAEPGGLGQLNGGMVFDVSTGMAARLMRASS 190
Query: 176 CP-----------VLEELGKQL----SFEIAVGLNGRVWVNAESPS-TVVLVSNAI---- 215
VLEELGK+L FEIAVG NG+VWV+ S T V + A+
Sbjct: 191 SSSDSQDGVAGLVVLEELGKKLEKSGGFEIAVGRNGKVWVDCSSGGETSVKATVAVGRCL 250
Query: 216 --MNSESLSAVQQKIMVDKLLQRIK 238
++ L+ QK +V ++L+ +K
Sbjct: 251 TTIDEHDLNPADQKKLVSRILREMK 275
>gi|350635750|gb|EHA24111.1| hypothetical protein ASPNIDRAFT_39846 [Aspergillus niger ATCC 1015]
Length = 279
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 30/205 (14%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEI 120
+ + +RY+P V D V+ V D F I + P A L L+FEG T++ P +
Sbjct: 73 LSTPNRRYIPTVNDLVIAQVHHSSVDYFHCMITPQAPH-AVLGQLSFEGATKKTRPMLKQ 131
Query: 121 GSLLYVRV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGLSRMLLSSPT 175
G L+Y RV V G EL+C + A+GKA GL L G +F+ STG++ L+ + +
Sbjct: 132 GDLVYARVLSVGLGAGAEVELACVNPATGKAEPGGLGQLNGGMVFDISTGMAARLMRASS 191
Query: 176 CP-----------VLEELGKQL----SFEIAVGLNGRVWVNAESPS-TVVLVSNAI---- 215
VL+ELGK+L FEIAVG NG+VWV+ S T V + A+
Sbjct: 192 SSSESQEGVAGLVVLDELGKKLEKSGGFEIAVGRNGKVWVDCSSGGETSVKATVAVGRCL 251
Query: 216 --MNSESLSAVQQKIMVDKLLQRIK 238
++ LS QK +V ++L+ +K
Sbjct: 252 TTIDEHDLSPADQKKLVSRILREMK 276
>gi|315054159|ref|XP_003176454.1| exosome complex exonuclease RRP40 [Arthroderma gypseum CBS 118893]
gi|311338300|gb|EFQ97502.1| exosome complex exonuclease RRP40 [Arthroderma gypseum CBS 118893]
Length = 270
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 29/197 (14%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT--IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+PC D ++ + D FF I P AFL LAFEG T++ P+ + G L+Y
Sbjct: 71 RYIPCQNDLIIAQIHHSSPD-FFHCIISPNSPHAFLGQLAFEGATKKTRPQLKAGELVYA 129
Query: 127 RV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGL-SRMLLSSP-----T 175
R+ V G EL+C + A+GKA GL L G +F+ ST SR++++ P
Sbjct: 130 RILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMVFDISTLFASRLMMTGPERQDGA 189
Query: 176 CP----VLEELGKQL----SFEIAVGLNGRVWVNAESPSTV-VLVSNAI------MNSES 220
P VLEELG++ FEIAVG NG+VWV++ + V V++ AI + +
Sbjct: 190 GPGGVIVLEELGRRFESYGGFEIAVGRNGKVWVDSSAEGDVGVMMVVAIGRCLKEADEKK 249
Query: 221 LSAVQQKIMVDKLLQRI 237
L V+QK +V ++L+ +
Sbjct: 250 LDVVEQKKLVLRILKEM 266
>gi|145238162|ref|XP_001391728.1| exosome complex exonuclease Rrp40 [Aspergillus niger CBS 513.88]
gi|134076209|emb|CAK39496.1| unnamed protein product [Aspergillus niger]
Length = 279
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 30/200 (15%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+RY+P V D V+ V D F I + P A L L+FEG T++ P + G L+Y
Sbjct: 78 RRYIPTVNDLVIAQVHHSSVDYFHCMITPQAPH-AVLGQLSFEGATKKTRPMLKQGDLVY 136
Query: 126 VRV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGLSRMLLSSPTCP--- 177
RV V G EL+C + A+GKA GL L G +F+ STG++ L+ + +
Sbjct: 137 ARVLSVGLGAGAEVELACVNPATGKAEPGGLGQLNGGMVFDISTGMAARLMRASSSSSES 196
Query: 178 --------VLEELGKQL----SFEIAVGLNGRVWVNAESPS-TVVLVSNAI------MNS 218
VL+ELGK+L FEIAVG NG+VWV+ S T V + A+ ++
Sbjct: 197 QEGVAGLVVLDELGKKLEKSGGFEIAVGRNGKVWVDCSSGGETSVKATVAVGRCLTTIDE 256
Query: 219 ESLSAVQQKIMVDKLLQRIK 238
LS QK +V ++L+ +K
Sbjct: 257 HDLSPADQKKLVSRILREMK 276
>gi|302661922|ref|XP_003022622.1| hypothetical protein TRV_03279 [Trichophyton verrucosum HKI 0517]
gi|291186578|gb|EFE42004.1| hypothetical protein TRV_03279 [Trichophyton verrucosum HKI 0517]
Length = 271
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 29/197 (14%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPT--IAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+PC D ++ + D FF I P AFL LAFEG T++ P+ + G L+Y
Sbjct: 72 RYIPCQNDLIIAQIHHSSPD-FFHCIISPNSPHAFLGQLAFEGATKKTRPQLKAGELVYA 130
Query: 127 RV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYMFETSTGL-SRMLLSSP-----T 175
R+ V G EL+C + A+GKA GL L G +F+ ST SR++++ P
Sbjct: 131 RILSVGVGAGGEVELTCVNPATGKAEPDGLGPLNGGMVFDVSTLFASRLMMTGPERKDGA 190
Query: 176 CP----VLEELGKQL----SFEIAVGLNGRVWVNAESPSTV-VLVSNAI------MNSES 220
P VLEELG++ FEIAVG NG+VWV++ + V V++ AI + +
Sbjct: 191 GPGGVIVLEELGRKFESYGGFEIAVGRNGKVWVDSSAEGDVGVMMVVAIGRCLRETDEKR 250
Query: 221 LSAVQQKIMVDKLLQRI 237
L V+QK +V ++L+ +
Sbjct: 251 LDVVEQKKLVLRVLKEM 267
>gi|54299383|ref|NP_983900.2| ADL196Wp [Ashbya gossypii ATCC 10895]
gi|51890954|gb|AAS51724.2| ADL196Wp [Ashbya gossypii ATCC 10895]
gi|374107113|gb|AEY96021.1| FADL196Wp [Ashbya gossypii FDAG1]
Length = 139
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 105 LAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETS 163
+AF +++N P ++G L Y RV A + L C D+S G+ A FG L G + E S
Sbjct: 1 MAFPNASKKNRPTLKVGDLCYARVSSAEKDLEAVLECMDSSTGRDAGFGQLDGGMVAEVS 60
Query: 164 TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSA 223
G +R LL + P+L E+ + FE+A+G+NG++WV AE+ T + AI +
Sbjct: 61 LGFARELLLNEAFPLLPEMARHAQFEVAIGVNGKIWVKAETVRTTLCCIRAIEACQERPQ 120
Query: 224 VQQKIMVDKLLQRIK 238
+ K V ++ + ++
Sbjct: 121 AEFKTTVKRVFKELR 135
>gi|124088764|ref|XP_001347226.1| Exosomal 3'-5' exoribonuclease complex subunit [Paramecium
tetraurelia strain d4-2]
gi|145474047|ref|XP_001423046.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057615|emb|CAH03599.1| Exosomal 3'-5' exoribonuclease complex subunit, putative
[Paramecium tetraurelia]
gi|124390106|emb|CAK55648.1| unnamed protein product [Paramecium tetraurelia]
Length = 238
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 23/239 (9%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQK----- 68
I +PG+ + S ++ TIK V++ K+ ++ +W++ +
Sbjct: 8 ITLPGEKIPLKSLVSGNTIKTNK------QDVNITKSLEIETKHAGWFWLDQQKIAICHN 61
Query: 69 --RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
Y P +ED V+ V ++ +F D+ + L + FEG T++N P ++G LLY
Sbjct: 62 PIYYTPEIEDYVIVQVTGKNSEYYFCDLGNGLVYNLNQMDFEGATKKNKPNIQVGQLLYA 121
Query: 127 RVVKANPGMNPELSCTDASGKAAE------FGLLKDGYMFETSTGLSRMLLSSPTCP-VL 179
RV++ N + +LSC + K F L G + + + LLSS T P +
Sbjct: 122 RVIELNHYLKGKLSCINPQSKKEWTTGENLFRELTGGVIVDLPLNFVQSLLSSQTKPELF 181
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+E+ K SFE+ VG NGRVW+ VL+ N + L QQ ++ K + +
Sbjct: 182 KEISKHSSFEVCVGKNGRVWIKG---VDAVLIINLLKRCAPLPLEQQLNLIHKFASQFQ 237
>gi|221060787|ref|XP_002261963.1| exosomal 3'-5' exoribonuclease complex subunit [Plasmodium knowlesi
strain H]
gi|193811113|emb|CAQ41841.1| exosomal 3'-5' exoribonuclease complex subunit,putative [Plasmodium
knowlesi strain H]
Length = 244
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 9/180 (5%)
Query: 58 PNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLP-VLAFEGGTRRNIP 116
P KY + ++ +Y+P V D V+GIV K D + +DI + + +F+ T+ + P
Sbjct: 54 PYKYDIMNTSYKYMPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIESFKYATKSSFP 113
Query: 117 KFEIGSLLYVRVVKANPGMNPEL-SCTDAS------GKAAEFGLLKDGYMFETSTGLSRM 169
G+LLY+ V K N N + SC ++S G L DGYMF S ++
Sbjct: 114 NLANGTLLYMIVEKINLDNNSVVASCINSSDVKSWINYENYLGELVDGYMFPVSIAYAKS 173
Query: 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIM 229
L+ C +L+ +G +S+E+AVG NGRVW+ + P ++ A+ S + Q ++
Sbjct: 174 LIGDK-CYILDLIGTDISYEVAVGHNGRVWIKTDDPRETNMIHTALRYSYGKTKAQMDVL 232
>gi|226293637|gb|EEH49057.1| exosome complex exonuclease RRP40 [Paracoccidioides brasiliensis
Pb18]
Length = 279
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 110/217 (50%), Gaps = 29/217 (13%)
Query: 14 IVVPGDVVLDLSSMTNQT--IKLGGGLR-----QECDSVSVI---KAGKLRF-SKPNKYW 62
+V+PGD + ++QT KL GL S S+I +AG + +K N
Sbjct: 8 LVLPGDPISYPRQQSHQTGPTKLSSGLNFLETPANNPSTSIIIPTQAGLITSDAKRNTLT 67
Query: 63 VES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEI 120
+ S Q+RY+P D ++ + AD F I T AFL LAFEG TR+ P +
Sbjct: 68 LHSFPQRRYIPSPNDLIIAQIHHTSADYFHCTITPHTPPAFLAQLAFEGATRKTRPFLKH 127
Query: 121 GSLLYVRVVK---ANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLL--- 171
G L+Y RV+ N G EL+C + A+GKA G L G +FE STGL+ L+
Sbjct: 128 GDLVYARVLSTGIGNAGGEVELTCVNPATGKAEPGGLGQLMGGMVFEISTGLAERLMMRG 187
Query: 172 ---SSPTCPVLEELGKQL----SFEIAVGLNGRVWVN 201
VLEELG++L FE+AVG NGR+WV+
Sbjct: 188 GSEGGSGIVVLEELGRKLEGHGGFEVAVGRNGRIWVD 224
>gi|149244019|ref|XP_001526565.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448959|gb|EDK43215.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 302
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 10/147 (6%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIR---GPTIAFLPVLAFEGGTRRNIPKF 118
++ES KRY+P D V+G VV D + V ++ P + LP +AF T++N P
Sbjct: 78 YIESDTKRYIPRNNDFVVGTVVGSVGDFYKVQLQQFLSPVL--LPFMAFPSATKKNRPNL 135
Query: 119 EIGSLLYVRVVK--ANPGMNPELSCTDA--SGKAAEFGLLKD-GYMFETSTGLSRMLLSS 173
IG +Y RV+ + ELSCTDA S ++ FG+L + G++F+ +R LL +
Sbjct: 136 NIGQCVYARVINDDNDSTFETELSCTDAMNSRESGGFGVLDELGFVFDLKLAFARELLYN 195
Query: 174 PTCPVLEELGKQLSFEIAVGLNGRVWV 200
VL L ++ FEIAVG+NGRVW+
Sbjct: 196 AKLNVLSTLATRVQFEIAVGINGRVWI 222
>gi|440293953|gb|ELP87000.1| exosome complex exonuclease RRP40, putative [Entamoeba invadens
IP1]
Length = 232
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 4/185 (2%)
Query: 33 KLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVPCVEDTVLGIVVDCKADNFF 91
+ G G+ + V +AG L++ KY+ V S K+Y P V D V+G++ D ++
Sbjct: 26 RFGDGIISKEGMPVVSRAGVLKYQSDTKYYYVYSDIKKYHPSVGDVVVGLIRRRTKDFYY 85
Query: 92 VDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEF 151
V+I A L +LAFE T++ P G +Y RV+ G+ P+++C F
Sbjct: 86 VNIGAYCDATLDLLAFENATKKTKPNLNEGDSVYCRVIDTK-GV-PQVACISQRKMEDGF 143
Query: 152 GLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLV 211
G L G+ F + R ++ C VL +G+ E+AVG+NG VWV T V+V
Sbjct: 144 GPLVGGWTFNLPQSMCRRIMGDGCC-VLPSIGQYTPCEVAVGVNGVVWVRTPKQITDVIV 202
Query: 212 SNAIM 216
N ++
Sbjct: 203 ENCLV 207
>gi|258566191|ref|XP_002583840.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907541|gb|EEP81942.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 266
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 124/253 (49%), Gaps = 30/253 (11%)
Query: 14 IVVPGDVVLD-LSSMTNQTIKLGGGLR--QECDSVSVIKAGKLRFSKPNKYW-----VES 65
I++PGD V + L S + KLG L E S I + + P+ +
Sbjct: 6 ILLPGDTVPNPLQSSNSNPPKLGSNLHILSEATSPKPITSTQTGLLLPDHKRNSLAILPF 65
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+RY+P D V+ V AD F+ + P ++ L LAFEG TR+ P+ + G L
Sbjct: 66 PHRRYIPQANDLVIAQVQRSSADYFYCTLSPHTPHVS-LAQLAFEGATRKTRPQLKNGEL 124
Query: 124 LYVRV--VKANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLL---SSPT 175
+Y RV V PG EL+C + A+GKA G L G +F+ S GL+ L+ S
Sbjct: 125 VYARVLSVGVGPGAEIELTCVNPATGKAEPGGLGPLTGGMVFDVSVGLTGRLMSSGGSGG 184
Query: 176 CPVLEELGKQL----SFEIAVGLNGRVWVN-----AESPSTVVLVSNAI--MNSESLSAV 224
VLEELGK+L FEIAVG NGRVWV+ AE V V + ++ +
Sbjct: 185 VVVLEELGKKLESQGGFEIAVGKNGRVWVDSSAGGAEGIKVVAAVGRCLKEVDERCMEGA 244
Query: 225 QQKIMVDKLLQRI 237
+QK +V ++L+ +
Sbjct: 245 EQKKVVSRVLREM 257
>gi|365763125|gb|EHN04655.1| Rrp40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 141
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 105 LAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETS 163
+AF +++N P ++G L+Y RV A + E+ C D++ G+ A FG+L+DG + + +
Sbjct: 1 MAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVN 60
Query: 164 TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
+R LL + P+L+ L FE+A+GLNG++WV E S + IM
Sbjct: 61 LNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIM 113
>gi|255934802|ref|XP_002558428.1| Pc12g16300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583047|emb|CAP81257.1| Pc12g16300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 272
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 129/264 (48%), Gaps = 39/264 (14%)
Query: 14 IVVPGDVVLDLSSMTNQT--IKLGGGLR--------QECDSVSVIKAGKLRF-SKPNKYW 62
+++P D V TN + ++LG GLR ++ +AG L +K N
Sbjct: 6 VLLPSDEVPQDHLPTNNSNPLRLGPGLRILSQPSSKGSSHVLTATQAGLLTTDAKRNTVS 65
Query: 63 VES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEI 120
+ S +RY+P V D V+ + D F + T A L L+FEG +++ P +
Sbjct: 66 LLSFPNRRYIPTVNDFVIAQIHHSSVDFFHCMVTPHTAHALLGQLSFEGASKKTRPMLKQ 125
Query: 121 GSLLYVRV--VKANPGMNPELSCTD-ASGKA-AEFGLLKDGYMFETSTGLSRMLLSSPTC 176
G L+Y RV V G EL+C + A+GKA G L G +F+ STG++ L+ + +
Sbjct: 126 GELVYARVQSVGVGAGAEVELTCVNPATGKADGGLGPLTGGMVFDVSTGMAARLIRASSS 185
Query: 177 P-----------VLEELGKQL----SFEIAVGLNGRVWVN-AESPSTVVLVSNAI----- 215
VL ELGK+L FEIAVG NG+VWV+ + + + V V+ A+
Sbjct: 186 SAEHNDAIEGLVVLSELGKKLESLGGFEIAVGRNGKVWVDCSNAAESAVKVTVAVGRCLQ 245
Query: 216 -MNSESLSAVQQKIMVDKLLQRIK 238
+ ++L QK +V K+L+ +K
Sbjct: 246 ETDQQNLHPHDQKKLVTKILRDMK 269
>gi|225678801|gb|EEH17085.1| exosome complex exonuclease RRP40 [Paracoccidioides brasiliensis
Pb03]
Length = 279
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 110/217 (50%), Gaps = 29/217 (13%)
Query: 14 IVVPGDVVLDLSSMTNQT--IKLGGGLR-----QECDSVSVI---KAGKLRF-SKPNKYW 62
+V+PGD + ++QT KL GL S S+I +AG + +K N
Sbjct: 8 LVLPGDPISYPRQQSHQTGPTKLSSGLNFLETPANNPSTSIIIPTQAGLITSDAKRNTLT 67
Query: 63 VES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEI 120
+ + Q+RY+P D ++ + AD F I T AFL LAFEG TR+ P +
Sbjct: 68 LHAFPQRRYIPSPNDLIIAQIHHTSADYFHCTITPHTPPAFLAQLAFEGATRKTRPFLKH 127
Query: 121 GSLLYVRVVK---ANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLL--- 171
G L+Y RV+ N G EL+C + A+GKA G L G +FE STGL+ L+
Sbjct: 128 GDLVYARVLSTGIGNAGGEVELTCVNPATGKAEPGGLGQLMGGMVFEISTGLAERLMMRG 187
Query: 172 ---SSPTCPVLEELGKQL----SFEIAVGLNGRVWVN 201
VLEELG++L FE+AVG NGR+WV+
Sbjct: 188 GSEGGSGIVVLEELGRKLEGHGGFEVAVGRNGRIWVD 224
>gi|156102615|ref|XP_001617000.1| exosomal 3'-5' exoribonuclease complex subunit [Plasmodium vivax
Sal-1]
gi|148805874|gb|EDL47273.1| exosomal 3'-5' exoribonuclease complex subunit, putative
[Plasmodium vivax]
Length = 244
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 9/180 (5%)
Query: 58 PNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLP-VLAFEGGTRRNIP 116
P KY + ++ +Y+P V D V+GIV K D + +DI + + +F+ T+ + P
Sbjct: 54 PYKYDIMNTSYKYMPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIESFKYATKNSFP 113
Query: 117 KFEIGSLLYVRVVKANPGMNPEL-SCTDAS------GKAAEFGLLKDGYMFETSTGLSRM 169
G+LLY+ V K N N + SC ++S G L DGYMF S ++
Sbjct: 114 NLANGTLLYMIVEKINLDNNSVVASCINSSDVKSWINYENYLGELVDGYMFPVSISYAKS 173
Query: 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIM 229
L+ C +L+ +G +S+E+AVG NGRVWV + P ++ A+ S + Q ++
Sbjct: 174 LIGDK-CYLLDLIGADVSYEVAVGHNGRVWVKTDDPRETNMIHTALKYSFGKTKAQMDVL 232
>gi|449330265|gb|AGE96525.1| hypothetical protein ECU09_1240 [Encephalitozoon cuniculi]
Length = 189
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
N +V S RY PC++D V+G VV D VD+ G T+ LP L+F T+RN P+
Sbjct: 40 NHLFVVSKTNRYQPCIDDIVIGKVVLTSQDMHKVDL-GGTVGALPSLSFTNATKRNKPEV 98
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
G L ++V+ G P L+C FG LK G + S R+L S T
Sbjct: 99 SKGDHLLCKIVRM--GTEPLLTCV-----GEGFGKLK-GAVLPLSPWKVRLLYLSDT--- 147
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
L +GK+ F IA+GLNG VW++AE + V + + +++ +
Sbjct: 148 LSTVGKKYRFRIALGLNGFVWIDAEKDTDVRDIYHCLLHED 188
>gi|425768354|gb|EKV06879.1| Exosome complex exonuclease Rrp40, putative [Penicillium digitatum
Pd1]
gi|425770314|gb|EKV08787.1| Exosome complex exonuclease Rrp40, putative [Penicillium digitatum
PHI26]
Length = 272
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 27/198 (13%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEIGSLLYV 126
+RY+P V D V+ + D F + T A L L+FEG +++ P + G L+Y
Sbjct: 72 RRYIPTVNDFVIAQIHHSSVDFFHCMVTPHTAHALLGQLSFEGASKKTRPMLKQGELVYA 131
Query: 127 RV--VKANPGMNPELSCTD-ASGKA-AEFGLLKDGYMFETSTGLSRMLLSSPTC------ 176
RV V G E++C + A+GKA G L G +F+ STG++ L+ + +
Sbjct: 132 RVQSVGVGAGAEVEITCVNPATGKADGGLGPLTGGMVFDVSTGMAARLIRASSSSAENTD 191
Query: 177 -----PVLEELGKQL----SFEIAVGLNGRVWVN-AESPSTVVLVSNAI------MNSES 220
VL ELGK+L FEIAVG NG+VWV+ + + + V + AI + +
Sbjct: 192 AIEGLAVLSELGKKLESLGGFEIAVGRNGKVWVDCSNAAESAVKATIAIGRCLQETDQHN 251
Query: 221 LSAVQQKIMVDKLLQRIK 238
L QK +V K+L+ +K
Sbjct: 252 LHTHDQKKLVTKILRDMK 269
>gi|389586008|dbj|GAB68737.1| exosomal 3'-5' exoribonuclease complex subunit, partial [Plasmodium
cynomolgi strain B]
Length = 228
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
Query: 58 PNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLP-VLAFEGGTRRNIP 116
P KY + ++ +Y+P V D V+GIV K D + +DI + + +F+ T+ + P
Sbjct: 54 PYKYDIMNTSYKYMPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIDSFKYATKSSFP 113
Query: 117 KFEIGSLLYVRVVKANPGMNPEL-SCTDASGKAA------EFGLLKDGYMFETSTGLSRM 169
G+LLY+ + K N N + SC +S + G L DGYMF S +R
Sbjct: 114 NLSNGTLLYMILEKINLDNNSVVASCISSSDVKSWINYENYLGELVDGYMFPVSISYARS 173
Query: 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
L+ C +L+ +G +S+E+AVG NGRVW+ + P ++ A+ S + Q
Sbjct: 174 LIGDK-CYILDLIGTDVSYEVAVGHNGRVWIKTDDPRETNMIRTALRYSFGKTKAQ 228
>gi|295660050|ref|XP_002790582.1| exosome complex exonuclease RRP40 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281457|gb|EEH37023.1| exosome complex exonuclease RRP40 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 279
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 110/217 (50%), Gaps = 29/217 (13%)
Query: 14 IVVPGDVVLDLSSMTNQT--IKLGGGLR-----QECDSVSVI---KAGKLRF-SKPNKYW 62
+V+PGD + ++QT KL GL+ S S+I +AG + +K N
Sbjct: 8 LVLPGDPISYPRQQSHQTGPTKLSSGLKFLETPANNPSTSIIIPTQAGLITSDAKRNTLT 67
Query: 63 VES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTI-AFLPVLAFEGGTRRNIPKFEI 120
+ + Q+RY+P D ++ + AD F I T AFL LAFEG TR+ P +
Sbjct: 68 LHTFPQRRYIPSPNDLIIAQIHHTSADYFHCTITPHTPPAFLAQLAFEGATRKTRPFLKH 127
Query: 121 GSLLYVRVVK---ANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLL--- 171
G L+Y RV+ N G EL+ + A+GKA G L G +FE STGL+ L+
Sbjct: 128 GDLVYARVLSTGIGNAGGEVELTSVNPATGKAEPGGLGQLMGGMVFEISTGLAERLMMRG 187
Query: 172 ---SSPTCPVLEELGKQL----SFEIAVGLNGRVWVN 201
VLEELG++L FE+AVG NGRVWV+
Sbjct: 188 GSEGGSGIVVLEELGRKLEGHGGFEVAVGRNGRVWVD 224
>gi|67536894|ref|XP_662221.1| hypothetical protein AN4617.2 [Aspergillus nidulans FGSC A4]
gi|40741229|gb|EAA60419.1| hypothetical protein AN4617.2 [Aspergillus nidulans FGSC A4]
gi|259482550|tpe|CBF77139.1| TPA: exosome complex exonuclease Rrp40, putative (AFU_orthologue;
AFUA_2G02340) [Aspergillus nidulans FGSC A4]
Length = 273
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 30/205 (14%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEI 120
+ SS +RYVP D V+ V AD F I + P A L L+FEG T++ P +
Sbjct: 67 LSSSNRRYVPTTNDLVIAQVHHSSADYFHCMITPQSPH-ALLGQLSFEGATKKTRPMLKG 125
Query: 121 GSLLYVRVVKA--NPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLLSSPT 175
G L+Y RV+ PG EL+C + A+GKA G L G +F+ STG++ L+ + +
Sbjct: 126 GDLVYARVLSTGLGPGAEVELTCVNPATGKAEPGGLGPLTGGMVFDISTGMAARLIKASS 185
Query: 176 CP-----------VLEELGKQLS----FEIAVGLNGRVWVN-AESPSTVVLVSNAI---- 215
VL+ELGK+L FEIAVG NG+VWV+ + S + + AI
Sbjct: 186 SSSDQQEGVAGLVVLDELGKKLEKVGGFEIAVGRNGKVWVDCSNSEEDAIKATVAIGRCI 245
Query: 216 --MNSESLSAVQQKIMVDKLLQRIK 238
++ +L Q+ +V ++L+ +K
Sbjct: 246 TMIDEHNLVPTDQRKLVTRILREMK 270
>gi|85014359|ref|XP_955675.1| hypothetical protein ECU09_1240 [Encephalitozoon cuniculi GB-M1]
gi|19171369|emb|CAD27094.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
Length = 189
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
N +V S RY PC++D V+G VV D VD+ G T+ LP L+F T+RN P+
Sbjct: 40 NHLFVVSKTNRYQPCIDDIVIGKVVLTSQDMHKVDL-GGTVGALPSLSFTNATKRNKPEV 98
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
G L ++V+ G P L+C FG LK G + S R+L S T
Sbjct: 99 SKGDHLLCKIVRM--GTEPLLTCV-----GEGFGKLK-GAVLPLSPWKVRLLYLSDT--- 147
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 219
L +GK+ F IA+GLNG VW++AE + V + + +++ +
Sbjct: 148 LSIVGKKYRFRIALGLNGFVWIDAEKDTDVRDIYHYLLHED 188
>gi|124512882|ref|XP_001349797.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23615214|emb|CAD52204.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 245
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 58 PNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIP 116
P KY + ++ +Y+P V D V+GIV K D + +DI + + +F+ T+ + P
Sbjct: 55 PYKYDIMNTSYKYIPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIDSFKYATKSSFP 114
Query: 117 KFEIGSLLYVRVVKANPGMNPEL-SCTDAS------GKAAEFGLLKDGYMFETSTGLSRM 169
G+LLY+ V K N N + SC ++S G L DG++F + ++
Sbjct: 115 NLLNGTLLYMVVEKMNLENNSVVTSCINSSDVKSWINYENYLGELVDGFVFSVNIASAKS 174
Query: 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIM 229
L+ C +L+ +G+ + +EIAVG NGR+W+ A P + L+ +A+ +S + Q ++
Sbjct: 175 LIGD-RCYILDLIGQDIKYEIAVGHNGRIWIKANDPLEINLIHSALKHSFGKTRAQMNVL 233
>gi|169783356|ref|XP_001826140.1| exosome complex exonuclease Rrp40 [Aspergillus oryzae RIB40]
gi|238493131|ref|XP_002377802.1| exosome complex exonuclease Rrp40, putative [Aspergillus flavus
NRRL3357]
gi|83774884|dbj|BAE65007.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220696296|gb|EED52638.1| exosome complex exonuclease Rrp40, putative [Aspergillus flavus
NRRL3357]
gi|391865003|gb|EIT74295.1| exosome complex exonuclease Rrp40 [Aspergillus oryzae 3.042]
Length = 272
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEI 120
+ + +RY+P D V+ + D F I + P A L L+FEG T++ P +
Sbjct: 67 LSTPNRRYLPTPGDLVIAQIHHSSPDYFHCMITPQAPQ-ALLGQLSFEGATKKTRPMLKQ 125
Query: 121 GSLLYVRVVKA--NPGMNPELSCTD-ASGKA-AEFGLLKDGYMFETSTGLSRMLLSSPTC 176
G L+Y RV+ G EL+C + A+G+A G L G +F+ STGL+ L+ + +
Sbjct: 126 GDLVYARVLSTGLGAGAEVELTCVNPATGRADGGLGPLTGGMVFDVSTGLAARLIKASSS 185
Query: 177 P-----------VLEELGKQL----SFEIAVGLNGRVWVN-AESPSTVVLVSNAI----- 215
VL+ELGK+L FEIAVG NG+VWV+ A V + AI
Sbjct: 186 SAEQQDGVAGLVVLDELGKKLEKAGGFEIAVGRNGKVWVDCANGGDYAVKATVAIGRCLS 245
Query: 216 -MNSESLSAVQQKIMVDKLLQRIK 238
++ LS+ Q+ +V ++L+ +K
Sbjct: 246 TIDEHELSSTDQRKLVTRILREMK 269
>gi|261203973|ref|XP_002629200.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis
SLH14081]
gi|239586985|gb|EEQ69628.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis
SLH14081]
gi|239608783|gb|EEQ85770.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis ER-3]
gi|327355435|gb|EGE84292.1| exosome complex exonuclease Rrp40 [Ajellomyces dermatitidis ATCC
18188]
Length = 281
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 117/252 (46%), Gaps = 35/252 (13%)
Query: 14 IVVPGDVVLDLSSMTNQ---TIKLGGGLR--------QECDSVSVIKAGKLRFS-KPNKY 61
+V+PGD + NQ T KL GLR ++ +AG L K N
Sbjct: 8 LVLPGDSISYPLQQPNQPATTTKLSSGLRVLETPANKTNTTLITATQAGLLTTDPKRNAL 67
Query: 62 WVES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFE 119
+ + Q+RY+P D ++ + D F I T A L LAFEG TR+ P +
Sbjct: 68 TLHTFPQRRYIPSPNDLLIAQIHHSSVDYFHCTITPHTPHALLGQLAFEGATRKTRPLLK 127
Query: 120 IGSLLYVRVVK---ANPGMNPELSCTDASGKAAE---FGLLKDGYMFETSTGLSRMLL-- 171
G L+Y RV+ N G EL+C + + + AE G L G +F+ STGL+ L+
Sbjct: 128 HGDLVYARVLSTGVGNTGGEVELTCVNPATRKAEPGGLGPLVGGMLFDISTGLAERLMMR 187
Query: 172 ----SSPTCPVLEELGKQL----SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSA 223
VLEELG +L FE+AVG NG+VWV+ + A +++S A
Sbjct: 188 GGSEGGSGVVVLEELGSKLESQGGFEVAVGRNGKVWVDCSAAR-----KGAGGDADSAKA 242
Query: 224 VQQKIMVDKLLQ 235
V+ + V + L+
Sbjct: 243 VKITVAVGRCLR 254
>gi|402465348|gb|EJW01211.1| hypothetical protein EDEG_04060 [Edhazardia aedis USNM 41457]
Length = 200
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 57 KPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIP 116
K N Y++ S ++P +D V+G + AD + +++ FLPVLAF TRRN P
Sbjct: 46 KKNIYFINSKVNLFMPQKDDIVIGKITFKTADFYKIELGQSYTGFLPVLAFPNVTRRNKP 105
Query: 117 KFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTC 176
+ ++ + R++ +P L C + GK DG+++ R LL
Sbjct: 106 ELQVDDYVISRIM--HPSQESVLYCDEGLGKI-------DGFVYNFPVWKIRKLL---VT 153
Query: 177 PVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN 217
L +LGK F+I G+NGRV++ +E VLV+ I+N
Sbjct: 154 QFLHDLGKSYKFQIGFGVNGRVFIKSED----VLVAKKIIN 190
>gi|119498085|ref|XP_001265800.1| exosome complex exonuclease Rrp40, putative [Neosartorya fischeri
NRRL 181]
gi|119413964|gb|EAW23903.1| exosome complex exonuclease Rrp40, putative [Neosartorya fischeri
NRRL 181]
Length = 274
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 102/200 (51%), Gaps = 30/200 (15%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+RY+P D V+ V A+ F+ I + P A L LAFEG T++ P G L+Y
Sbjct: 73 RRYIPTPNDLVIAQVHHSSAEYFYCMITPQSPH-ALLGQLAFEGATKKTRPMLRQGDLVY 131
Query: 126 VRV--VKANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLL--SSPTCP- 177
RV + G EL+C + A+GKA G L G +F+ STG++ L+ SS T
Sbjct: 132 ARVLSIGLGAGAEVELTCVNPATGKAEPGGLGPLNGGMVFDVSTGMAARLMRASSSTSEQ 191
Query: 178 --------VLEELGKQLS----FEIAVGLNGRVWVN-AESPSTVVLVSNAI------MNS 218
VLEELGK+L FEIAVG NG+VWV+ + V + AI ++
Sbjct: 192 EDGVDGLVVLEELGKKLEKVGGFEIAVGRNGKVWVDCSNGGDAAVKATVAIGRCLTTIDE 251
Query: 219 ESLSAVQQKIMVDKLLQRIK 238
L+ Q+ +V ++L+ +K
Sbjct: 252 HDLNQTDQRKLVTRILREMK 271
>gi|212543075|ref|XP_002151692.1| exosome complex exonuclease Rrp40, putative [Talaromyces marneffei
ATCC 18224]
gi|210066599|gb|EEA20692.1| exosome complex exonuclease Rrp40, putative [Talaromyces marneffei
ATCC 18224]
Length = 279
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 32/223 (14%)
Query: 45 VSVIKAGKLRFSKPNKYWVESS---QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAF 101
+ +AG L PN+ V +RY+P V D ++ V D FF I P F
Sbjct: 55 IQATQAGILSID-PNRKSVSVQTFPNRRYIPTVNDLIIAQVQRSSQD-FFHCIITPHAPF 112
Query: 102 --LPVLAFEGGTRRNIPKFEIGSLLYVRV--VKANPGMNPELSCTD-ASGKA--AEFGLL 154
L LAFEG +++ P + G L+Y RV V G EL+C + A+GKA GLL
Sbjct: 113 AVLGQLAFEGASKKTRPNLKQGDLVYARVLSVGVGAGTEVELTCVNPATGKAEPGGLGLL 172
Query: 155 KDGYMFETSTGLSRMLLSSPTCP---------VLEELGKQLS----FEIAVGLNGRVWVN 201
G +F+ STGL+ L+ + + +LEELGK+ FEIAVG NG+VWV+
Sbjct: 173 SGGMLFDISTGLAARLMKASSSSSSAEATSVVILEELGKKFESKGGFEIAVGRNGKVWVD 232
Query: 202 AESPSTV-VLVSNAI------MNSESLSAVQQKIMVDKLLQRI 237
+ + ++ AI ++ +++++Q+ +V ++L+ +
Sbjct: 233 CSGSGDIGIKITIAIGRCLKELDQRHMTSIEQRKLVSRVLREL 275
>gi|428671089|gb|EKX72008.1| conserved hypothetical protein [Babesia equi]
Length = 141
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 107 FEGGTRRNIPKFEIGSLLYVRVVKANPG--MNPELSCTDA------SGKAAEFGLLKDGY 158
F G T+RN P+ G +++ +V + P M E+SC DA + FG L DG
Sbjct: 6 FRGATKRNKPELNEGDVIFCQVTRHYPRYEMPTEVSCIDADSVKQWTTNECYFGQLMDGV 65
Query: 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNS 218
F+ + + LS C +L++ +L FEIAVGLNGRVWV + +LV+ I S
Sbjct: 66 TFDVPITYA-VSLSRDKCYILKKCASKLKFEIAVGLNGRVWVKGSNIQETLLVARFIKRS 124
Query: 219 ESLSAVQQKIMVDKLL 234
S Q + + KL
Sbjct: 125 YGCSVAQIEALFTKLF 140
>gi|344236095|gb|EGV92198.1| Exosome complex exonuclease RRP40 [Cricetulus griseus]
Length = 102
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 135 MNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
M PE+ C D+ G+A G++ +DG +F+ + GL R LL+ P C +++ELGK EI G
Sbjct: 1 MEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEIVQELGKLYPLEIVFG 59
Query: 194 LNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+NGR+WV A++ ++++N + E ++ Q+K + +L
Sbjct: 60 MNGRIWVKAKTIQQTLILANVLEACEHMTTDQRKQIFARL 99
>gi|115386192|ref|XP_001209637.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190635|gb|EAU32335.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 277
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 30/200 (15%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+RYVP D V+ + D F I + P + L LAFEG T++ P G L+Y
Sbjct: 76 RRYVPIANDLVIAQIHHSSPDYFHCMITPQAPQV-LLGQLAFEGATKKTRPMLRQGDLVY 134
Query: 126 VRVVKA--NPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLLSSPTCP--- 177
RV+ G EL+C + A+G+A G L G +F+ STG++ L+ + +
Sbjct: 135 ARVLSTGLGAGAEVELTCVNPATGRAEPGGLGPLTGGMVFDISTGMAARLMRASSSSAEN 194
Query: 178 --------VLEELGKQLS----FEIAVGLNGRVWVN-AESPSTVVLVSNAI------MNS 218
VL+ELGK+L FEIAVG NG+VWV+ A + + + AI ++
Sbjct: 195 QEGVDGLVVLDELGKKLEKVGGFEIAVGRNGKVWVDCANGGDSAIKATVAIGRCLSTIDE 254
Query: 219 ESLSAVQQKIMVDKLLQRIK 238
+L+ QK +V ++L+ +K
Sbjct: 255 HNLNPADQKKLVTRILREMK 274
>gi|68074361|ref|XP_679095.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499752|emb|CAH97937.1| conserved hypothetical protein [Plasmodium berghei]
Length = 249
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 9/180 (5%)
Query: 58 PNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLP-VLAFEGGTRRNIP 116
P KY + ++ +Y+P + D V+GIV K D + +DI + + +F+ ++ + P
Sbjct: 54 PYKYDIMNTSHKYIPKIGDLVIGIVKSKKLDYYQMDINSNCECIIHKIESFKYASKSSFP 113
Query: 117 KFEIGSLLYVRVVKANPGMNPEL-SCTDAS------GKAAEFGLLKDGYMFETSTGLSRM 169
G+LLY+ + K N N + SC +++ G L DG++F + ++
Sbjct: 114 NLLNGTLLYMIIEKINLDNNMVVASCINSADVKSWINYENYLGELIDGFLFAVNISYAKS 173
Query: 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIM 229
L+ C +L+ +GK + +EIA+G NG VW+ P ++ +A+ + + +Q ++
Sbjct: 174 LIGDK-CYILDLIGKDVPYEIAIGHNGWVWIKTNDPQETNMIRSALKHCYGKTNIQMAVL 232
>gi|70989039|ref|XP_749369.1| exosome complex exonuclease Rrp40 [Aspergillus fumigatus Af293]
gi|66847000|gb|EAL87331.1| exosome complex exonuclease Rrp40, putative [Aspergillus fumigatus
Af293]
gi|159128783|gb|EDP53897.1| exosome complex exonuclease Rrp40, putative [Aspergillus fumigatus
A1163]
Length = 274
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 30/200 (15%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+RY+P D V+ V A+ F+ I + P + L LAFEG T++ P G L+Y
Sbjct: 73 RRYIPTPNDLVIAQVHHSSAEYFYCMITPQSPHV-LLGQLAFEGATKKTRPMLRQGDLVY 131
Query: 126 VRV--VKANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLL--SSPTCP- 177
RV + G EL+C + A+GKA G L G +F+ STG++ L+ SS T
Sbjct: 132 ARVLSIGLGAGAEVELTCVNPATGKAEPGGLGPLNGGMVFDVSTGMAARLMRASSSTSEQ 191
Query: 178 --------VLEELGKQLS----FEIAVGLNGRVWVN-AESPSTVVLVSNAI------MNS 218
VLEELG++L FEIAVG NG+VWV+ + V + AI ++
Sbjct: 192 EDGVDGLVVLEELGRKLEKVGGFEIAVGRNGKVWVDCSNGGDAAVKATVAIGRCLTAIDE 251
Query: 219 ESLSAVQQKIMVDKLLQRIK 238
L+ Q+ +V ++L+ +K
Sbjct: 252 HDLNQTDQRKLVTRILREMK 271
>gi|121710720|ref|XP_001272976.1| exosome complex exonuclease Rrp40, putative [Aspergillus clavatus
NRRL 1]
gi|119401126|gb|EAW11550.1| exosome complex exonuclease Rrp40, putative [Aspergillus clavatus
NRRL 1]
Length = 280
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 30/199 (15%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
RY+P D V+ V D F+ I + P A L LAFEG T++ P + G L+Y
Sbjct: 80 RYIPTPNDLVIAQVHHSSVDYFYCMITPQSPH-AVLGQLAFEGATKKTRPMLKQGDLVYA 138
Query: 127 RVVKA--NPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLSRMLL--SSPTCP-- 177
RV+ G EL+C + A+GKA G L G +F+ STG++ L+ SS T
Sbjct: 139 RVLSMGLGAGAEVELTCVNPATGKAEPGGLGPLTGGMVFDISTGMAARLMRASSSTAEQQ 198
Query: 178 -------VLEELGKQL----SFEIAVGLNGRVWVN-AESPSTVVLVSNAI------MNSE 219
VLEELGK+L FEIAVG NG+VWV+ + V + AI ++
Sbjct: 199 DGVAGLVVLEELGKKLEKVGGFEIAVGRNGKVWVDCSNGGDAAVKATVAIGQCLTTIDEH 258
Query: 220 SLSAVQQKIMVDKLLQRIK 238
+L Q+ +V ++L+ +K
Sbjct: 259 NLDTNDQRKLVTRILREMK 277
>gi|397466872|ref|XP_003805165.1| PREDICTED: exosome complex component RRP40 isoform 2 [Pan paniscus]
Length = 164
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 17 PGDVV---LDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVES 65
PG V L L++ +++ G GLR+ D + V K G+LR +P YWV+S
Sbjct: 45 PGGAVERPLSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDS 104
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
QKRYVP D V+GIV D F VD+ G A L L+FEG T+RN P +
Sbjct: 105 QQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQ 158
>gi|114624604|ref|XP_001170234.1| PREDICTED: exosome complex component RRP40 isoform 1 [Pan
troglodytes]
gi|332831951|ref|XP_003312141.1| PREDICTED: exosome complex component RRP40 [Pan troglodytes]
Length = 164
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 17 PGDVV---LDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVES 65
PG V L L++ +++ G GLR+ D + V K G+LR +P YWV+S
Sbjct: 45 PGGAVERPLSLNAGARSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSEGGVYWVDS 104
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
QKRYVP D V+GIV D F VD+ G A L L+FEG T+RN P +
Sbjct: 105 QQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQ 158
>gi|303390811|ref|XP_003073636.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
intestinalis ATCC 50506]
gi|303302783|gb|ADM12276.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
intestinalis ATCC 50506]
Length = 195
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKF 118
N +V S RY PC++D V+G + D +D+ G + LP L+F T+RN P+
Sbjct: 40 NHLFVVSKTNRYHPCIDDIVIGKAILTSQDMHRIDLGG-VVGALPSLSFTNATKRNKPEI 98
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
G L ++ A G P L+C FG L G + R+L S T
Sbjct: 99 NKGDYLLCKI--ARTGTEPLLTCV-----GEGFGKLS-GVVLPLEPWKVRLLYLSTT--- 147
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTV 208
L +GK+ F IA+GLNG VW++AE + +
Sbjct: 148 LATIGKKYRFRIALGLNGFVWIDAEKDTDI 177
>gi|300708351|ref|XP_002996356.1| hypothetical protein NCER_100548 [Nosema ceranae BRL01]
gi|239605652|gb|EEQ82685.1| hypothetical protein NCER_100548 [Nosema ceranae BRL01]
Length = 205
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 20/192 (10%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+ VVPGD +L + ++ GL +E + + G L N +V S RY P
Sbjct: 7 RTVVPGD---ELKEKCSYSL----GLYKEDNKIKSYVYGTL-CRVQNHLFVISKTSRYFP 58
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
++D V+G V+ AD + +D+ I LPVL+F ++RN P + L R++++
Sbjct: 59 YIDDIVIGRVIYSCADYYKLDL-DTYIGILPVLSFTNASKRNKPDIKKDDWLLCRIIES- 116
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV 192
G P LSC FG L DGY+F+ + +ML L ++GK+ +F+ V
Sbjct: 117 -GAEPILSCV-----GEGFGKL-DGYVFKIKVWMCQMLYVD---DFLYKIGKKYNFKCCV 166
Query: 193 GLNGRVWVNAES 204
G+NG + + E+
Sbjct: 167 GINGYICITGEA 178
>gi|426361819|ref|XP_004048095.1| PREDICTED: exosome complex component RRP40 isoform 2 [Gorilla
gorilla gorilla]
Length = 164
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAGACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
D V+GIV D F VD+ G A L L+FEG T+RN P +
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQ 158
>gi|50511939|ref|NP_001002269.1| exosome complex component RRP40 isoform 2 [Homo sapiens]
gi|158260165|dbj|BAF82260.1| unnamed protein product [Homo sapiens]
Length = 164
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
D V+GIV D F VD+ G A L L+FEG T+RN P +
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQ 158
>gi|441622246|ref|XP_004088824.1| PREDICTED: exosome complex component RRP40 [Nomascus leucogenys]
Length = 164
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 18 GDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKR 69
G+ L L++ +++ G GLR+ D + V K G+LR +P YWV+S QKR
Sbjct: 49 GERPLSLNAGARPRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKR 108
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
YVP D V+GIV D F VD+ G A L L+FEG T+RN P +
Sbjct: 109 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQ 158
>gi|154278204|ref|XP_001539920.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413505|gb|EDN08888.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 279
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 14 IVVPGDVV---LDLSSMTNQTIKLGGGLR------QECDSVSVIKAGK--LRFSKPNKYW 62
+++PGD + S T KL GLR +S ++I A + L + P +
Sbjct: 8 LLLPGDPISYPHQQPSHPATTTKLSSGLRTLQTPSSNKNSTALITATQAGLLTTDPKRNV 67
Query: 63 VESS---QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKF 118
+ Q+RY+P D ++ + D F +I T A L LAFEG TR+ P
Sbjct: 68 LTLHTFPQRRYIPSPNDFLIAQIHHSSVDYFHCNITPHTPYALLGQLAFEGATRKTRPLL 127
Query: 119 EIGSLLYVRVVKANPGM--NPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLS-RMLLS 172
+ G L+Y RV+ G EL+C + A+GKA G L G +F+ STGL+ R+ L
Sbjct: 128 KHGDLVYARVLSTGVGNAGEVELTCVNPATGKAEPGGLGPLAGGMVFDISTGLAERLSLR 187
Query: 173 SPT-----CPVLEELGKQL----SFEIAVGLNGRVWVN 201
+ VLEELG +L FEIAVG NG+VWV+
Sbjct: 188 GGSEGVSGVVVLEELGSRLEGHGGFEIAVGRNGKVWVD 225
>gi|225560756|gb|EEH09037.1| exosome complex exonuclease RRP40 [Ajellomyces capsulatus G186AR]
Length = 279
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 14 IVVPGDVV---LDLSSMTNQTIKLGGGLR------QECDSVSVIKAGK--LRFSKPNKYW 62
+++PGD + S T KL GLR +S ++I A + L + P +
Sbjct: 8 LLLPGDPISYPHQQPSHPATTTKLSSGLRTLQTPSSNKNSTALITATQAGLLTTDPKRNV 67
Query: 63 VESS---QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKF 118
+ Q+RY+P D ++ + D F +I T A L LAFEG TR+ P
Sbjct: 68 LTLHTFPQRRYIPSPNDFLIAQIHHSSVDYFHCNITPHTPYALLGQLAFEGATRKTRPLL 127
Query: 119 EIGSLLYVRVVKANPGM--NPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLS-RMLLS 172
+ G L+Y RV+ G EL+C + A+GKA G L G +F+ STGL+ R+ L
Sbjct: 128 KHGDLVYARVLSTGLGNAGEVELTCVNPATGKAEPGGLGPLAGGMVFDISTGLAERLSLR 187
Query: 173 SPT-----CPVLEELGKQL----SFEIAVGLNGRVWVN 201
+ VLEELG +L FEIAVG NG+VWV+
Sbjct: 188 GGSEGVSGVMVLEELGSRLESHGGFEIAVGRNGKVWVD 225
>gi|240280702|gb|EER44206.1| exosome complex exonuclease Rrp40 [Ajellomyces capsulatus H143]
gi|325089044|gb|EGC42354.1| exosome complex exonuclease RRP40 [Ajellomyces capsulatus H88]
Length = 279
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 81/151 (53%), Gaps = 16/151 (10%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLY 125
Q+RY+P D ++ + D F +I T A L LAFEG TR+ P + G L+Y
Sbjct: 75 QRRYIPSPNDFLIAQIHHSSVDYFHCNITPHTPYALLGQLAFEGATRKTRPLLKHGDLVY 134
Query: 126 VRVVKANPGM--NPELSCTD-ASGKA--AEFGLLKDGYMFETSTGLS-RMLLSSPT---- 175
RV+ G EL+C + A+GKA G L G +F+ STGL+ R+ L +
Sbjct: 135 ARVLSTGVGNAGEVELTCVNPATGKAEPGGLGPLAGGMVFDISTGLAERLSLRGGSEGVS 194
Query: 176 -CPVLEELGKQL----SFEIAVGLNGRVWVN 201
VLEELG +L FEIAVG NG+VWV+
Sbjct: 195 GVVVLEELGSRLEGHGGFEIAVGRNGKVWVD 225
>gi|339240671|ref|XP_003376261.1| signal peptidase complex catalytic subunit Sec11 [Trichinella
spiralis]
gi|316975035|gb|EFV58494.1| signal peptidase complex catalytic subunit Sec11 [Trichinella
spiralis]
Length = 1099
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 6 STANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVES 65
++ L ++V PGD DL + + + +G G+R + + G + + + W++
Sbjct: 744 NSPKLQKRLVFPGD---DLGPVFHLPLAMGPGVRLSSNQLISTHFG-MALQRKDGIWIDF 799
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLY 125
+K Y P D V+GIVV D + V+I A + L+FE T+R P +G ++Y
Sbjct: 800 CEKAYFPYAGDRVVGIVVGKWMDYWKVEIGAWKTAIIHYLSFENATKRMRPVVNMGDVIY 859
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLL 171
R+ + PEL C D GKA G+L DG M + +R LL
Sbjct: 860 GRLKH---DIEPELVCKDEMGKANNLGILPSDGMMLKMPPAYARRLL 903
>gi|403284821|ref|XP_003933753.1| PREDICTED: exosome complex component RRP40-like [Saimiri
boliviensis boliviensis]
Length = 102
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 135 MNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG 193
M PE+ C D+ G+A G++ +DG +F+ + GL R LL+ P C +++E+GK I G
Sbjct: 1 MEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRQLLA-PNCEIIQEVGKLYPTCIVFG 59
Query: 194 LNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
+NGR+WV A++ ++++N + E +++ Q+K + +L
Sbjct: 60 MNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRL 99
>gi|401828613|ref|XP_003888020.1| RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999028|gb|AFM99039.1| RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 190
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIG 121
+V S RY PC++D V+G + D +D+ G + LP L+F T+RN P+ G
Sbjct: 43 FVMSRTNRYHPCIDDIVIGKAMVTSQDIHRIDL-GGVVGILPSLSFTNATKRNKPEISKG 101
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
L ++ + G+ P L+C FG L +G + R+L + T L
Sbjct: 102 DYLLCKISRM--GIEPLLTCV-----GEGFGKL-NGVVLPLDPWKIRLLYLNST---LST 150
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTV 208
+GK+ F IA+GLNG VW++AE + +
Sbjct: 151 IGKKYKFRIALGLNGFVWIDAEKDTDI 177
>gi|296815072|ref|XP_002847873.1| exosome complex exonuclease RRP40 [Arthroderma otae CBS 113480]
gi|238840898|gb|EEQ30560.1| exosome complex exonuclease RRP40 [Arthroderma otae CBS 113480]
Length = 228
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 29/219 (13%)
Query: 47 VIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFF--VDIRGPTIAFLPV 104
++ L+ S+PN + + D V+ + D F + + P AFL
Sbjct: 7 ILPGDTLQLSQPNAPKLGPIFIYVITGPNDLVIAQIHHSSQDFFHCIISLNSPH-AFLGQ 65
Query: 105 LAFEGGTRRNIPKFEIGSLLYVRV--VKANPGMNPELSCTD-ASGKAAEFGL--LKDGYM 159
L+FEG T++ P+ + G L+Y R+ V G EL+C + A+GKA GL L G +
Sbjct: 66 LSFEGATKKTRPQLKPGELVYARILSVGVGAGGEIELTCVNTATGKAEPDGLGPLTGGMV 125
Query: 160 FETSTGL-SRMLLSSPT---------CPVLEELGKQL----SFEIAVGLNGRVWVNAESP 205
F+ ST SR++++ VLEELG++ FE+AVG NG+VWV++ +
Sbjct: 126 FDVSTLFASRLMMTGAERKDGAGPGGVIVLEELGRKFESYGGFEVAVGRNGKVWVDSSAD 185
Query: 206 STV-VLVSNAI------MNSESLSAVQQKIMVDKLLQRI 237
V++ AI + + L ++QK +V K+L+ +
Sbjct: 186 GDAGVMIVVAIGRCLKETDDKRLDVLEQKKLVLKVLKEM 224
>gi|396082066|gb|AFN83678.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
romaleae SJ-2008]
Length = 194
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIG 121
+V S RY PC++D V+G + D +D+ G + LP L+F T+RN P+ G
Sbjct: 43 FVISKTNRYHPCIDDIVIGKAILTSQDIHRMDL-GGMVGVLPSLSFTNATKRNKPEISKG 101
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
L ++ A G+ P L+C FG L +G + R+L S L
Sbjct: 102 DYLLCKI--ARMGIEPLLTCL-----GEGFGKL-NGVVLPLDPWKVRLLYLSTA---LST 150
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTV 208
+GK+ F IA+GLNG VW+ AE + +
Sbjct: 151 IGKKYKFRIALGLNGFVWIEAEKDTDI 177
>gi|242785618|ref|XP_002480632.1| exosome complex exonuclease Rrp40, putative [Talaromyces stipitatus
ATCC 10500]
gi|218720779|gb|EED20198.1| exosome complex exonuclease Rrp40, putative [Talaromyces stipitatus
ATCC 10500]
Length = 998
Score = 70.9 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 80/263 (30%), Positives = 123/263 (46%), Gaps = 52/263 (19%)
Query: 14 IVVPGDVVLD--LSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQ---- 67
IV+PGD V L S T+ T G + S + K + S P + ++S+Q
Sbjct: 6 IVLPGDQVPSNILPSATSTTPLRLGPGLRLLQQQS--QNSKNKTSSPTSHIIQSTQAGII 63
Query: 68 ----------------KRYVPCVEDTVLGIVVDCKADNFFVDIRGP--TIAFLPVLAFEG 109
+RY+P V D ++ V D FF I P +A L LAFEG
Sbjct: 64 SIDHNRKSVSVQPFPNRRYIPTVNDLIIAQVQRSSQD-FFHCIVTPHAPLAVLGQLAFEG 122
Query: 110 GTRRNIPKFEIGSLLYVRV--VKANPGMNPELSCTD-ASGKA--AEFGLLKDGYMFETST 164
+++ P + G L+Y RV V G EL+C + A+GKA GLL G +F+ ST
Sbjct: 123 ASKKTRPNLKQGDLVYARVLSVGVGAGTEVELTCVNPATGKAEPGGLGLLSGGMVFDVST 182
Query: 165 GLSRMLL---------SSPTCPVLEELGKQLS----FEIAVGLNGRVWVNAESPSTVVL- 210
GL+ L+ + + + EELGK+ FEIAVG NG+VWV+ + +
Sbjct: 183 GLAARLMKASSSSSSAEAASVVIPEELGKKFESKGGFEIAVGRNGKVWVDCSGSGDIAIK 242
Query: 211 VSNAI------MNSESLSAVQQK 227
++ AI ++ L++++Q+
Sbjct: 243 ITIAIGRCLTELDQRHLTSIEQR 265
>gi|378756655|gb|EHY66679.1| hypothetical protein NERG_00319 [Nematocida sp. 1 ERTm2]
Length = 221
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 51 GKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG 110
G+L + +WV Q RY+P ++D VLGIV + + VDI P+ A + L F
Sbjct: 66 GELLSLDKHNFWVNFKQFRYIPLLDDIVLGIVKGKGKETYKVDIGAPSYAIINYLDFPTA 125
Query: 111 TRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRML 170
T+RN +G ++ +VV+ P +SC + K GLLK G + SR
Sbjct: 126 TKRNRVSLNVGDVILAQVVEDAPHAEAVISCKTEAVKG--MGLLKGGAALKVGILQSRKY 183
Query: 171 LSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPST 207
L +P P L L +NG W+ SP+T
Sbjct: 184 LLNP--PALNVSATSL-----FSMNGYAWI---SPAT 210
>gi|209876157|ref|XP_002139521.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555127|gb|EEA05172.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 261
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P D ++G V++ D + V I P A L +AFEG T+RN P +IG+ + R+
Sbjct: 54 YIPNKGDIIVGTVLNKIGDLYKVSINAPYNAILHNMAFEGATKRNKPNIDIGNHICARIS 113
Query: 130 KANPGMNP-ELSCTD--------------------------------ASGKAAEFGLLKD 156
++ EL+C K ++ +KD
Sbjct: 114 YSDISSGEIELTCITPEEKRIWTSNENYLGLLKNKNIINISNNTKKILDNKNIQYKCIKD 173
Query: 157 GYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
G + L+ +LL+ C +L + K FEI VG N +W A + ++L+ +++
Sbjct: 174 GIIMNIPISLTNILLAD-HCYILNTISKYFPFEICVGQNSIIWFTASTVQQLLLIMSSLK 232
Query: 217 NSESLSAVQQKIMVDKLLQRIK 238
+ S + +++V+ +I+
Sbjct: 233 IANKCSKSEFEVIVENFWNKIR 254
>gi|253745083|gb|EET01191.1| Exosome complex exonuclease, putative [Giardia intestinalis ATCC
50581]
Length = 227
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 26/221 (11%)
Query: 14 IVVPGD-VVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PGD +V + ++ + L G LR + KAG L S + Y P
Sbjct: 15 LVIPGDSIVASSCTGGSEVVVLDGVLRATTVCYAENKAGVLSVSS-------CFARLYTP 67
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D+V+G++++ D + VDIR AF+ AF G +R+N + G +Y R+ A
Sbjct: 68 YEGDSVVGVIMEKVIDGYIVDIRAALPAFIGATAFPGASRKNPVLLKPGDAIYARISSAP 127
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYM-FETSTGLSRML-----LSSPTCPVLEELGKQL 186
G P+L+C DG+M T + R++ + + + ++L K +
Sbjct: 128 LGAQPQLTCA------------LDGHMALTTVSAHGRIVYGTLAMGTEAESLFKKLAKLI 175
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 227
F+ G NG +WV + + V + + + A+ Q+
Sbjct: 176 PFKGFAGPNGLIWVTGSTLYDSITVQRCLEEPQEMDAIVQE 216
>gi|71661940|ref|XP_817984.1| ribosomal RNA processing protein 40 [Trypanosoma cruzi strain CL
Brener]
gi|70883208|gb|EAN96133.1| ribosomal RNA processing protein 40, putative [Trypanosoma cruzi]
Length = 300
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 99/243 (40%), Gaps = 48/243 (19%)
Query: 8 ANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQ------ECDSVSVIKAGK-----LRFS 56
A L + +PGD VL L + LG GLR ++ S G
Sbjct: 18 APLRSHVCLPGDPVLLLDP--TAVVTLGNGLRPLPHAPPHGNTTSGSAGGGNTVVVAELC 75
Query: 57 KPNKYWVESSQ-----------KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL 105
P + VES+ +RY+ D V+ IVV + ++ +A L VL
Sbjct: 76 GPVECSVESNHVRRYTLDAPAARRYMYSPRDPVVAIVVRKTSSYYYCYTGAAMLAVLDVL 135
Query: 106 AFEGGTRRNIPKFEIGSLLYVRVVKANPGMNP--------------ELSC---------T 142
F+G T+ + P+ + G ++Y V G P ELSC
Sbjct: 136 GFDGATKSSRPRLQEGDVVYAFVKPKPSGAQPASGDACVESAGDEVELSCMAGDVGLVAK 195
Query: 143 DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-VLEELGKQLSFEIAVGLNGRVWVN 201
D + A FG L DG + +R LL+S +L LG+++ FE+ VG+NG VWV
Sbjct: 196 DWTSAEAVFGPLTDGTVVRVPISYARSLLASDGASRLLSLLGERVPFEVCVGVNGFVWVR 255
Query: 202 AES 204
++
Sbjct: 256 GQT 258
>gi|312088388|ref|XP_003145842.1| exosome complex exonuclease RRP40 [Loa loa]
Length = 153
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 138 ELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG 196
+L+C D G+A G L G++F+TS L R +LS PT +L +GK + FEI G+NG
Sbjct: 38 KLTCVDGEGRARGMGPLPSGGFLFKTSLNLVRRILS-PTSKLLSLIGKDIKFEITSGING 96
Query: 197 RVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
R+W+ + V+ V I +SE + VDK + R+
Sbjct: 97 RIWIKGINVVEVIAVYRIIKDSEFIPEPDIPAFVDKQISRL 137
>gi|159111079|ref|XP_001705772.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC 50803]
gi|157433861|gb|EDO78098.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC 50803]
Length = 279
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 26/221 (11%)
Query: 14 IVVPGD-VVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+VVPGD +V + ++ L G LR + KAG L S + Y P
Sbjct: 67 LVVPGDGLVAGSCTGGSEATVLNGVLRATAVCYAENKAGVLSLS-------SRFARLYTP 119
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D+++G+V++ D + VDIR AF+ AF G +R+N + G +Y RV A
Sbjct: 120 YEGDSIVGVVIERAIDGYLVDIRAALPAFIGATAFIGASRKNPVLLKPGDAIYARVSSAP 179
Query: 133 PGMNPELSCTDASGKAAEFGLLKDGYM-FETSTGLSRML-----LSSPTCPVLEELGKQL 186
G P+L+C DG+M T + R++ + + + ++L + +
Sbjct: 180 LGAQPQLTCA------------LDGHMALNTVSAHGRVVYGTLAMGAEAGLLFKKLARLI 227
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 227
F+ G NG +WV + + + + + A+ Q+
Sbjct: 228 PFKGFAGPNGLLWVTGSTLYDSITAQRCLEDPLEMDAIAQE 268
>gi|145544579|ref|XP_001457974.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425793|emb|CAK90577.1| unnamed protein product [Paramecium tetraurelia]
Length = 134
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 105 LAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAE-FGLLKDGYMFETS 163
+ FEG T++N ++G LLY RV + N + +LSC + K F L G + +
Sbjct: 1 MGFEGATKKNKSNIQVGQLLYARVTELNHYLKGKLSCINPQSKTKNLFRELIGGVIVDLP 60
Query: 164 TGLSRMLLSSPTCP-VLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLS 222
+ LLSS T P + + + + SFEI VG NGR+WV VL+ N + +
Sbjct: 61 LNFVQSLLSSQTKPELFKVISQHSSFEICVGKNGRMWVKGLD---AVLIINLLKRCAPMQ 117
Query: 223 AVQQKIMVDKL 233
QQ +++K
Sbjct: 118 LDQQLNLINKF 128
>gi|342873262|gb|EGU75469.1| hypothetical protein FOXB_14017 [Fusarium oxysporum Fo5176]
Length = 113
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 135 MNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-----VLEELGKQ-LS 187
M+PE+ C +S GK+ G L G ++ S G++R L+ + VLEELG L
Sbjct: 1 MDPEIECVSSSTGKSEGLGPLTGGMLYTVSLGMARRLMMPKSVQEGRVVVLEELGNAGLQ 60
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES--LSAVQQKIMVDKLLQ 235
FE A G NG+ WV++E+ TV+ V A++ ++ L +QK +V K+++
Sbjct: 61 FETATGRNGKFWVDSENVKTVIAVGRAVLETDEKRLDVEEQKKLVRKIIK 110
>gi|82596019|ref|XP_726089.1| nuclease [Plasmodium yoelii yoelii 17XNL]
gi|23481349|gb|EAA17654.1| Putative nuclease [Plasmodium yoelii yoelii]
Length = 210
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 58 PNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLP-VLAFEGGTRRNIP 116
P KY + ++ +Y+P + D V+GIV K D + +DI + + +F+ ++ + P
Sbjct: 54 PYKYDIMNTSHKYIPKIGDLVIGIVKSKKLDYYQMDINSNCECIIHKIESFKYASKSSFP 113
Query: 117 KFEIGSLLYVRVVKANPGMNPEL-SCTDAS------GKAAEFGLLKDGYMFETSTGLSRM 169
G+LLY+ + K N N + SC +++ G L DG++F + ++
Sbjct: 114 NLLNGTLLYMIIEKINLDNNMVVASCINSADVKSWINYENYLGELVDGFLFAVNISYAKS 173
Query: 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAES 204
L+ C +L+ +GK + +EIA+G NG W++ +
Sbjct: 174 LIGDK-CYILDLIGKDVPYEIAIGHNG--WLDKNT 205
>gi|407844244|gb|EKG01870.1| ribosomal RNA processing protein 40, putative,exosome complex
exonuclease, putative [Trypanosoma cruzi]
Length = 300
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 99/243 (40%), Gaps = 48/243 (19%)
Query: 8 ANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQ------ECDSVSVIKAGK-----LRFS 56
A L + +PGD VL L + LG GLR ++ S G
Sbjct: 18 APLRSHVCLPGDPVLLLDP--TAVVTLGSGLRPLPHAPPHGNTTSGSAGGGNTVVVAELC 75
Query: 57 KPNKYWVESSQ-----------KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL 105
P + VES+ +RY+ D V+ IVV + ++ +A L VL
Sbjct: 76 GPVECSVESNHVRRYTLDAPAARRYLYSPRDPVVAIVVRKTSSYYYCYTGAAMLAVLDVL 135
Query: 106 AFEGGTRRNIPKFEIGSLLYVRVVKANPGMNP--------------ELSC---------T 142
F+G T+ + P+ + G ++Y V G P ELSC
Sbjct: 136 GFDGATKSSRPRLQEGDVVYAFVKPKPSGAQPASGDACVESAGDEVELSCMAGDVGLVAK 195
Query: 143 DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-VLEELGKQLSFEIAVGLNGRVWVN 201
D + + FG L DG + +R LL+S +L LG+++ FE+ VG+NG +WV
Sbjct: 196 DWTSTESVFGPLTDGTVVRVPISYARSLLASDGASRLLSLLGERVPFEVCVGVNGFLWVR 255
Query: 202 AES 204
++
Sbjct: 256 GQT 258
>gi|387594477|gb|EIJ89501.1| hypothetical protein NEQG_00271 [Nematocida parisii ERTm3]
Length = 267
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWV Q RY+P ++D VLG+V D + VDI GP+ A + L F T+RN
Sbjct: 122 KYWVNYKQFRYLPLLDDIVLGVVKGKGKDTYKVDIGGPSYAIINYLDFPSATKRNRVTLC 181
Query: 120 IGSLLYVRVVKANPGMNPELSC-TDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
G +L +VV+ + +SC T+A G+LK+G + + SR L P P
Sbjct: 182 TGDVLLGQVVEDSLHCESVISCRTEA---IPGMGVLKNGVLLKVGILQSRKYLLHP--PD 236
Query: 179 LEELGKQLSFEIAVGLNGRVWVN 201
+ S +NG WV+
Sbjct: 237 IR------SSVCIFSMNGYAWVS 253
>gi|387596683|gb|EIJ94304.1| hypothetical protein NEPG_00971 [Nematocida parisii ERTm1]
Length = 273
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
KYWV Q RY+P ++D VLG+V D + VDI GP+ A + L F T+RN
Sbjct: 128 KYWVNYKQFRYLPLLDDIVLGVVKGKGKDTYKVDIGGPSYAIINYLDFPSATKRNRVTLC 187
Query: 120 IGSLLYVRVVKANPGMNPELSC-TDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
G +L +VV+ + +SC T+A G+LK+G + + SR L P P
Sbjct: 188 TGDVLLGQVVEDSLHCESVISCRTEA---IPGMGVLKNGVLLKVGILQSRKYLLHP--PD 242
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAESPSTV 208
+ S +NG WV+ + ++
Sbjct: 243 IR------SSVCIFSMNGYAWVSPPTQESI 266
>gi|116754660|ref|YP_843778.1| exosome complex RNA-binding protein Rrp4 [Methanosaeta thermophila
PT]
gi|116666111|gb|ABK15138.1| ribosomal RNA-processing protein RRP4 [Methanosaeta thermophila PT]
Length = 221
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD+ ++ T + G G V + G F ++ V +Y+P
Sbjct: 4 KIVIPGDL------LSEDTRRAGEGTYVRNGKVYSLLYGIASFR--DRISVIPLAGKYIP 55
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR-RNIPKF-EIGSLLYVRVVK 130
V D V+G+V D N+ +DI P L + F ++ K+ IGS + RV
Sbjct: 56 AVGDNVIGVVKDITFSNWILDINSPYDGLLHISEFPKKIDVEDMSKYLRIGSSVMARVKD 115
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLSFE 189
+P M EL+ D G++K G + E S T + R++ ++ L K+L+
Sbjct: 116 VDPAMKVELTLND-----RRLGVIKTGRVVEISHTRVPRLI--GKGGSMISMLKKELNCN 168
Query: 190 IAVGLNGRVWVNA 202
I VG NGR+WV+
Sbjct: 169 IFVGQNGRIWVSG 181
>gi|12843792|dbj|BAB26116.1| unnamed protein product [Mus musculus]
Length = 82
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 155 KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNA 214
+DG +F+ + GL R LL+ P C +++ELGK EI G+NGR+WV A++ ++++N
Sbjct: 2 QDGLLFKVTLGLIRKLLA-PDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQTLILANV 60
Query: 215 IMNSESLSAVQQKIMVDKL 233
+ E ++ Q+K + +L
Sbjct: 61 LEACEHMTTEQRKQIFARL 79
>gi|429961738|gb|ELA41283.1| hypothetical protein VICG_01656 [Vittaforma corneae ATCC 50505]
Length = 194
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 12/146 (8%)
Query: 61 YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEI 120
Y++ + K YVP D V+G VV D + VD+ G LP L+F T+RN P+ E
Sbjct: 43 YFIMAKTKIYVPKQYDVVIGRVVYASQDYYKVDL-GSCTGILPALSFANATKRNRPELEK 101
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLE 180
+ + +V + + G + LSC K G + + + E+ R+L + VL+
Sbjct: 102 ENTVLCQVERVSDG-DALLSC-----KKEGLGAIDECFPIESWK--IRLLYFNN---VLQ 150
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPS 206
+L K SF IA+ +NG VW++A++ +
Sbjct: 151 KLSKNRSFRIALAINGFVWIDADAET 176
>gi|308161450|gb|EFO63896.1| Exosome complex exonuclease, putative [Giardia lamblia P15]
Length = 227
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 3 AKPSTANLVDKIVVPGDVVLDLSSMTNQTIK-LGGGLRQECDSVSVIKAGKLRFSKPNKY 61
A+ A +++PGD ++ S + L G LR + KAG L S
Sbjct: 4 AEGDAAQGTGVLIIPGDGIVAGSCTGGSEVAVLDGVLRATAVCYAENKAGVLGLSS---- 59
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIG 121
+ Y P D+++G++++ D + VDIR AF+ AF G +R+N + G
Sbjct: 60 ---RFARLYTPYEGDSIVGVIIERAIDGYLVDIRAALPAFIGATAFLGASRKNPVLLKAG 116
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
+Y R+ A G P+L+C G AA + G + + + + + ++
Sbjct: 117 DAIYARISSAPFGAQPQLTCA-LDGHAALTTVSTHGRVVYGT-----LAMGVEAGLLFKK 170
Query: 182 LGKQLSFEIAVGLNGRVWVNAES 204
L K + F+ G NG +WV +
Sbjct: 171 LAKLIPFKGFAGPNGLLWVTGST 193
>gi|340056120|emb|CCC50449.1| putative exosome complex exonuclease RRP40 [Trypanosoma vivax Y486]
Length = 340
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 68/285 (23%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGL-----------RQECDSVSV-IKA-------GKL 53
+ +PGD VL L T + LGGGL +++ S SV + A G +
Sbjct: 59 HVYLPGDAVLALE--TGAVVSLGGGLYPLPQLNNQPEQRDGHSASVDLNAVVVAEFCGPV 116
Query: 54 RFS----KPNKYWVES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE 108
S + Y ++ + +RY + ++ IV A+ + + A L LAF+
Sbjct: 117 SCSTNSNRARHYALDGPATRRYTYATGEPIVAIVTKKNANYYTCYTGASSTAVLDALAFD 176
Query: 109 GGTRRNIPKFEIGSLLYVRVVKANPGMNP------------------ELSCT-------- 142
G T+ + P+ + G ++Y VKA +P ELSC
Sbjct: 177 GATKTSRPRLQEGDVVYA-FVKACGCADPSNPSDLGVHAIPSTADEVELSCMAGEVGLQT 235
Query: 143 -DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVN 201
D + A FG L G + + +R L+S P +L +G+++ +++ VG+NG VWV
Sbjct: 236 RDWTSTEAIFGPLLGGTVIRVTLPYARSLISGPASQLLAYIGERVPYDVCVGVNGLVWVR 295
Query: 202 AE----SPST----VVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ P+ V V++ I+ S Q+ + ++QR+
Sbjct: 296 GQPCKADPTAEVRRTVAVASCIVES------QEDETQEAMMQRVH 334
>gi|284161627|ref|YP_003400250.1| KH type 1 domain-containing protein [Archaeoglobus profundus DSM
5631]
gi|284011624|gb|ADB57577.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
Length = 281
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK--FEIGSLLYV 126
RYVP + DTV+GIV + A+ + VDI P +AFLPV P +IG +
Sbjct: 56 RYVPSLGDTVIGIVKEVTANGWIVDILSPYVAFLPVQENPAMRPNKKPNEVLDIGDAIIA 115
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+V+ +P M L+ D + G + + T + R++ + +++ L +L
Sbjct: 116 KVMNIDPKMRVTLTMKDKLCRPIRVGRI----VVINPTRVPRVIGKKGS--MIKLLKSEL 169
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+I VG NG +W+N + + E++ ++Q+ + L RI
Sbjct: 170 DVQIIVGQNGLIWINGDR-------RKVSIAEEAIYIIEQEAHTEGLTDRI 213
>gi|407404653|gb|EKF30025.1| DNA ligase I, putative [Trypanosoma cruzi marinkellei]
Length = 344
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 50/244 (20%)
Query: 8 ANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQ--ECDSVSVIKAGKLRFSK-------- 57
A L + +PGD VL L + LG GLR S I +G
Sbjct: 62 APLRSHVCLPGDPVLLLDP--TAVVTLGNGLRPLPHAPSHGNITSGSAGGENTVVVAELC 119
Query: 58 --------PN---KYWVES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL 105
PN +Y +++ + +RY+ D V+ IVV + ++ +A L L
Sbjct: 120 GPVACSVGPNQVRRYTLDAPAARRYMYSPRDPVVAIVVRKTSSYYYCYTGAAMLAVLDAL 179
Query: 106 AFEGGTRRNIPKFEIGSLLYVRVVKANPGMNP--------------ELSCT--------- 142
+F+G T+ + P+ + G ++Y V + P ELSC
Sbjct: 180 SFDGATKSSRPRLQEGDVVYAFVKPKPSSVQPASSDACVESAGDEVELSCMAGDVGLVAK 239
Query: 143 DASGKAAEFGLLKDGYMFETSTGLSRMLLSS--PTCPVLEELGKQLSFEIAVGLNGRVWV 200
D + A FG L G + +R LL+S +C +L LG+++ FE+ VG+NG VWV
Sbjct: 240 DWTSAEAVFGPLTGGTVVRVPIPYARSLLASDGASC-LLSLLGERVPFEVCVGVNGFVWV 298
Query: 201 NAES 204
++
Sbjct: 299 RGQT 302
>gi|119589382|gb|EAW68976.1| hCG1732751 [Homo sapiens]
Length = 93
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 156 DGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
DG +F+ + GL R LL+ P C +++E+GK S EI G+NGR+WV ++ ++++N +
Sbjct: 14 DGLLFKVTLGLVRKLLT-PGCGIIQEVGKLYSLEIVFGMNGRIWVKTKTIHQTLILANIL 72
Query: 216 MNSESLSAVQQKIMVDKL 233
E + + Q+K + +L
Sbjct: 73 EACEHMMSDQRKQIFSRL 90
>gi|7229638|gb|AAF42918.1|AF229833_1 apoptosis-related protein PNAS-3, partial [Homo sapiens]
Length = 79
Score = 60.5 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 36/59 (61%)
Query: 61 YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE 119
YWV+S QKRYVP D V+GIV D F VD+ G A L L+FEG T+RN P +
Sbjct: 15 YWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQ 73
>gi|261331311|emb|CBH14301.1| exosome complex exonuclease RRP40, putative [Trypanosoma brucei
gambiense DAL972]
Length = 304
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 53 LRFSKPNKYWVES----SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE 108
LR + PN + + +RY+ D V+ IV+ A + ++A L L F+
Sbjct: 81 LRTAGPNHTQLYKLNGPAARRYMYAARDPVVAIVMKKNASYYSCYTGAASLAVLDALGFD 140
Query: 109 GGTRRNIPKFEIGSLLYVRVVKANPGMNP------------------ELSCT-------- 142
G T+ N P+ + G ++Y VK N + ELSC
Sbjct: 141 GATKTNKPRLQEGDVVYA-FVKGNADASSLDTKFDDGRVVVSSSDEVELSCMAAEVGLVA 199
Query: 143 -DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVN 201
D + A FG L G + + +R L+ P +L LG ++ +++ VG+NG VWV
Sbjct: 200 RDWTSAEAVFGPLVGGTVVRVALPYARSLIDGPASRLLALLGDRVPYDVCVGVNGLVWVR 259
Query: 202 AE 203
Sbjct: 260 GH 261
>gi|71744870|ref|XP_827065.1| exosome complex exonuclease RRP40 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|14250904|emb|CAC39257.1| Rrp40p homologue [Trypanosoma brucei]
gi|70831230|gb|EAN76735.1| exosome complex exonuclease RRP40 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 304
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 53 LRFSKPNKYWVES----SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE 108
LR + PN + + +RY+ D V+ IV+ A + ++A L L F+
Sbjct: 81 LRTAGPNHTQLYKLNGPAARRYMYAARDPVVAIVMKKNASYYSCYTGAASLAVLDALGFD 140
Query: 109 GGTRRNIPKFEIGSLLYVRVVKANPGMNP------------------ELSCT-------- 142
G T+ N P+ + G ++Y VK N + ELSC
Sbjct: 141 GATKTNKPRLQEGDVVYA-FVKGNADASSLDTKFDDGRVVVSSSDEVELSCMAAEVGLVA 199
Query: 143 -DASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVN 201
D + A FG L G + + +R L+ P +L LG ++ +++ VG+NG VWV
Sbjct: 200 RDWTSAEAVFGPLVGGTVVRVALPYARSLIDGPASRLLALLGDRVPYDVCVGVNGLVWVR 259
Query: 202 AE 203
Sbjct: 260 GH 261
>gi|403223440|dbj|BAM41571.1| uncharacterized protein TOT_030000834 [Theileria orientalis strain
Shintoku]
Length = 707
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPKFEIGSLLYVRV 128
YVP V D V+GI+ + D + V+I FL + F G T++ P+ G +++ ++
Sbjct: 536 YVPRVGDHVIGIITNKNNDYYTVNINDLYEGFLLCIDGFRGATKKIKPQLAQGDVVFCQI 595
Query: 129 VKANPGMNPELSCTDA------SGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+ EL+C + S FG L G + S++L + L L
Sbjct: 596 LSIYNYNLIELTCKNVDEIKSFSTNETYFGHLTKGMTIKIPLTHSKILCNDVDNYTLS-L 654
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
K F+IAVG NG++WVN + + + I S LS VQ
Sbjct: 655 LKDYKFQIAVGFNGKLWVNCGNNDLTLKICRFIKLSYGLSQVQ 697
>gi|399215900|emb|CCF72588.1| unnamed protein product [Babesia microti strain RI]
Length = 204
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIR-GPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
++QK Y P + D V+ IV + +D F +DI G V F +RRNIP +
Sbjct: 64 TAQKFYTPKIGDHVIAIVTNKNSDYFTLDINCGFRATIDAVDGFPMASRRNIPNLKEKDA 123
Query: 124 LYVRV--VKANPGMNPELSCTDASGKAA------EFGLLKDGYMFETSTGLSRMLLSSPT 175
++ +V + + + +++C D S + FG L G + + L + P
Sbjct: 124 IFCQVSHIYRSQALPTKVTCIDPSCNKSWTTFETYFGQLVGGMVIRMDIPICYSLAAKP- 182
Query: 176 CPVLEELGKQLSFEIAVGLNGR 197
C +L LG +EIAVGLNGR
Sbjct: 183 CHLLSSLGNTCKYEIAVGLNGR 204
>gi|429965456|gb|ELA47453.1| hypothetical protein VCUG_01104 [Vavraia culicis 'floridensis']
Length = 214
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y P D +G V D +D L AF T+RN PK G L R++
Sbjct: 68 YNPQQNDVAIGKAVGIHPDYIKLDFGHAVKGVLLAQAFLNCTKRNKPKINTGDFLLCRIL 127
Query: 130 KANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFE 189
+ G SC + G+L+ G++FET L + L +L ++G++ ++
Sbjct: 128 RV--GDVVFASCCEEG-----LGVLEGGWIFETDALLVKTLFIKKN--ILNDIGREYKYK 178
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAI 215
IA+GLNG +W++ ++ V V + I
Sbjct: 179 IALGLNGMMWIDGKNAMVVKNVRDEI 204
>gi|282165298|ref|YP_003357683.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
gi|282157612|dbj|BAI62700.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
Length = 226
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF-EGGTRRNIPKF-EIGSLLYV 126
RY+P D V+G +VD N+F DI P L + F E N+ K+ IG L+
Sbjct: 54 RYIPARGDLVIGKIVDMTFSNWFADINSPYEGMLHISEFPERVDPANMGKYLHIGELIIA 113
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQ 185
RV +P M EL+ D +LK G + + S + R++ ++ L K
Sbjct: 114 RVEDVDPTMKVELTMRD-----EHLRILKQGRVIDISHVKIPRVI--GRNGSMISMLKKD 166
Query: 186 LSFEIAVGLNGRVWVNAES 204
L+ I VG NGR+W+ +
Sbjct: 167 LNVSIFVGQNGRIWMKGDD 185
>gi|330508836|ref|YP_004385264.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
gi|328929644|gb|AEB69446.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
Length = 221
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 36/207 (17%)
Query: 13 KIVVPGDVVLDLSSMTNQ--TIKLGG------GLRQECDSVSVIK-AGKLRFSKPNKYWV 63
K+VVPGD++ + + + + IK G GL D ++VI AGK
Sbjct: 4 KVVVPGDLLSEDAKRSGEGTYIKDGSVYSLLYGLANYRDKINVIPLAGK----------- 52
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN-IPKF-EIG 121
Y+P D V+G+V D N+ VDI P L + F + + K+ IG
Sbjct: 53 ------YMPAPGDNVIGVVKDITFSNWIVDINSPYDGLLHISEFPKRIESDEMSKYLRIG 106
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLE 180
S + RV +P M EL+ D + G ++ G + E S T + R++ + ++
Sbjct: 107 SSIMTRVKDVDPTMKVELTLND-----RKLGPIRTGQVIEISHTRVPRLIGKGGS--MIS 159
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPST 207
L K+++ I VG NGR+W+N + T
Sbjct: 160 MLKKEVNCSIFVGQNGRIWINGCADDT 186
>gi|398009755|ref|XP_003858076.1| exosome complex exonuclease RRP40, putative [Leishmania donovani]
gi|322496281|emb|CBZ31352.1| exosome complex exonuclease RRP40, putative [Leishmania donovani]
Length = 300
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 62/233 (26%)
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFV-DIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
+ +RY+P D VL I+ + +++ I G +A++ LAF+G T+ + P+ G ++
Sbjct: 65 ASRRYIPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPRLVEGDVV 124
Query: 125 YVRVVKANPGMNP-------------------ELSCTDA----------SGKAAEFGLLK 155
Y VK G + E+SCT A SG+AA FG L+
Sbjct: 125 YC-YVKPRAGSSYVGGVHRSVASEVFDTTGEVEVSCTAAEVGLPPKDWTSGEAA-FGPLQ 182
Query: 156 DGYMFETSTGLSRMLLSS----------------------------PTCPVLEELGKQLS 187
G + R L++ P +L+ LG+++
Sbjct: 183 GGRVLHLPLAYVRRLITPVGSSPDKASAQQRKHGHTEGEGGYGDEVPASYLLQLLGRRVP 242
Query: 188 FEIAVGLNGRVWVNAES--PSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
FE+AVGLNG VWV S T + S +S Q + ++ R++
Sbjct: 243 FEVAVGLNGLVWVRGLSSEADTTAAARRTVAVSSCISEAQYDVTRAEMEARVE 295
>gi|146076136|ref|XP_001462850.1| putative exosome complex exonuclease RRP40 [Leishmania infantum
JPCM5]
gi|134066931|emb|CAM65036.1| putative exosome complex exonuclease RRP40 [Leishmania infantum
JPCM5]
Length = 300
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 62/233 (26%)
Query: 66 SQKRYVPCVEDTVLGIVV-DCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
+ +RY+P D VL I+ ++ I G +A++ LAF+G T+ + P+ G ++
Sbjct: 65 ASRRYIPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPRLVEGDVV 124
Query: 125 YVRVVKANPGMNP-------------------ELSCTDA----------SGKAAEFGLLK 155
Y VK G + E+SCT A SG+AA FG L+
Sbjct: 125 YC-YVKPRAGSSYVGGVHRSVASEVFDTTGEVEVSCTAAEVGLPPKDWTSGEAA-FGPLQ 182
Query: 156 DGYMFETSTGLSRMLLSS----------------------------PTCPVLEELGKQLS 187
G + S R L++ P +L+ LG ++
Sbjct: 183 GGRVLHLSLAYVRRLITPVGSSPDKASAQQRKHGHTEGEGGYGDEVPASYLLQLLGCRVP 242
Query: 188 FEIAVGLNGRVWVNAES--PSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
FE+AVGLNG VWV S T + S +S Q + ++ R++
Sbjct: 243 FEVAVGLNGLVWVRGLSSEADTTAAARRTVAVSSCISEAQYDVTRAEMEARVE 295
>gi|383319306|ref|YP_005380147.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
gi|379320676|gb|AFC99628.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
Length = 224
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+IVVPGD++ + + + GG + V + +R V RY+P
Sbjct: 4 EIVVPGDLLGEDPKLAGSGTYVQGGRVYSANYGLVDRRTNIR--------VIPLSGRYIP 55
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF-EGGTRRNIPK-FEIGSLLYVRVVK 130
D V+G VVD N+ +DI P L V + E N+ K +G L+ RV
Sbjct: 56 ARGDLVIGKVVDVTFSNWIIDINSPYEGLLHVSEYPERVDPANMSKCLHVGELIIARVAD 115
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLSFE 189
+P M EL+ D K +LK G + + S + R++ ++ L K L+
Sbjct: 116 VDPSMKVELTMRDEHLK-----VLKQGRVVDISHVKIPRVI--GRNGSMISMLKKDLNVS 168
Query: 190 IAVGLNGRVWVNAE 203
I VG NGR+W+ +
Sbjct: 169 IFVGQNGRIWLKGD 182
>gi|327400937|ref|YP_004341776.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
gi|327316445|gb|AEA47061.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
Length = 231
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLYVR 127
RY+P D V+GIV + A+ + VDI P AFLP+L + R + + +IG + +
Sbjct: 53 RYIPSTGDIVIGIVREVTANGWVVDIYSPYQAFLPLLEYPETRNRKVNEILDIGDAVIAK 112
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V+ +P M L+ D + G + + + R++ ++ L +L
Sbjct: 113 VLNIDPKMKVTLTMKDKVCRPVRVGRI----VAINPARVPRVI--GKKGSMIRLLKSELG 166
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+I VG NG +W+N + V + AI E+ + + + D++ + IK
Sbjct: 167 VQIIVGQNGLIWLNGDR-RKVSIAEEAIYIIEAEAHTEG--LTDRITEFIK 214
>gi|401414568|ref|XP_003871781.1| putative exosome complex exonuclease RRP40 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488001|emb|CBZ23246.1| putative exosome complex exonuclease RRP40 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 332
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 61/204 (29%)
Query: 60 KYWVES-SQKRYVPCVEDTVLGIVV-DCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK 117
+Y V + + +RY P D VL I+ ++ I G +A++ LAF+G T+ + P+
Sbjct: 90 RYTVPTPASRRYTPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPR 149
Query: 118 FEIGSLLYVRVVKANPGMNP-------------------ELSCTDA----------SGKA 148
G ++Y VK G N E+SCT A SG+A
Sbjct: 150 LVEGDVVYC-YVKPRAGSNYVEGVHRSVASGVFDTTGEVEVSCTAAEVGLPPKDWTSGEA 208
Query: 149 AEFGLLKDGYMFETSTGLSRMLLSS----------------------------PTCPVLE 180
FG L+ G + R LL+ P +L+
Sbjct: 209 V-FGPLQGGRVLHLPLAYVRRLLTPLGSSPDKASAQQRKRGHTEGEGGDGDEVPASYLLQ 267
Query: 181 ELGKQLSFEIAVGLNGRVWVNAES 204
LG+++ FE+AVGLNG VWV S
Sbjct: 268 LLGRRVPFEVAVGLNGLVWVRGLS 291
>gi|147919676|ref|YP_686580.1| exosome complex RNA-binding protein Rrp4 [Methanocella arvoryzae
MRE50]
gi|110621976|emb|CAJ37254.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 226
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF-EGGTRRNIPKF-EIGSLLYV 126
RY+P D V+G V D N+ VDI P L + E + N+ K+ G L+
Sbjct: 53 RYIPARGDLVIGKVTDVTFSNWIVDINSPYEGLLHASEYPERVDQNNMTKYLHEGELIIA 112
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQ 185
++ +P M EL+ + +LKDG + E S + R++ +++ L K
Sbjct: 113 KISDVDPSMKVELTL-----REEHLKILKDGRVIEISHVKIPRVI--GRNGSMIKMLMKD 165
Query: 186 LSFEIAVGLNGRVWVNAES 204
L I VG NGR+W+ +
Sbjct: 166 LDCSIFVGQNGRIWLKGDD 184
>gi|312137047|ref|YP_004004384.1| ribosomal RNA-processing protein rrp4 [Methanothermus fervidus DSM
2088]
gi|380876879|sp|E3GZ90.1|ECR1_METFV RecName: Full=Probable exosome complex RNA-binding protein 1
gi|311224766|gb|ADP77622.1| ribosomal RNA-processing protein RRP4 [Methanothermus fervidus DSM
2088]
Length = 222
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLY 125
Q +Y+P D+V+G VVD K + VDIR P A LPV ++N+ + F IG L+
Sbjct: 55 QGKYIPKKNDSVIGKVVDVKFARWIVDIRSPYSAILPVSEVIDKGKKNLEEIFGIGDTLF 114
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQ 185
+++++ + +L + E G L + T + + R++ +++ L K
Sbjct: 115 LKIIEVDEVKKVKLGLHEGGPIKLEGGTL----AYITPSKVPRVI--GRKGSMIKMLKKL 168
Query: 186 LSFEIAVGLNGRVWVNAES 204
+ EI +G NG +WV +
Sbjct: 169 TNCEILLGQNGVIWVKGDK 187
>gi|83754322|pdb|2BA0|A Chain A, Archaeal Exosome Core
gi|83754323|pdb|2BA0|B Chain B, Archaeal Exosome Core
gi|83754324|pdb|2BA0|C Chain C, Archaeal Exosome Core
Length = 229
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK--FEIGSLLYV 126
RY P V D V+GI+ + A+ + VDI P AFLPV P +IG +
Sbjct: 52 RYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIA 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+V+ +P M L+ D + FG + + + R++ + +++ L +L
Sbjct: 112 KVLNIDPKMKVTLTMKDRICRPIRFGRI----VAINPARVPRVIGKKGS--MIKLLKSEL 165
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+I VG NG +WVN + + E++ ++Q+ + L R+
Sbjct: 166 DVQIVVGQNGLIWVNGDRRKVSIA-------EEAIYLIEQEAHTEGLTDRV 209
>gi|11498103|ref|NP_069328.1| exosome complex RNA-binding protein Rrp4 [Archaeoglobus fulgidus
DSM 4304]
gi|29336577|sp|O29758.1|ECR1_ARCFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2650134|gb|AAB90745.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 223
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK--FEIGSLLYV 126
RY P V D V+GI+ + A+ + VDI P AFLPV P +IG +
Sbjct: 52 RYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIA 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+V+ +P M L+ D + FG + + + R++ + +++ L +L
Sbjct: 112 KVLNIDPKMKVTLTMKDRICRPIRFGRI----VAINPARVPRVIGKKGS--MIKLLKSEL 165
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+I VG NG +WVN + + E++ ++Q+ + L R+
Sbjct: 166 DVQIVVGQNGLIWVNGDRRKVSIA-------EEAIYLIEQEAHTEGLTDRV 209
>gi|412990477|emb|CCO19795.1| hypothetical protein Bathy14g02120 [Bathycoccus prasinos]
Length = 160
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y+P D +LGIV + + + +D + +A L V+ + +IG++L RV
Sbjct: 12 YLPIEGDIILGIVAEKSSSHLLIDCKAKKLAKLLVMNSARDLLLKSDRIQIGTVLCCRV- 70
Query: 130 KANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFE 189
G S AA LL+ G++F+ ++RMLL S + + + E
Sbjct: 71 -QTIGYKCTSFTVSCSQSAATHALLQKGFIFQVLPLVARMLLHSKD-VLTKSINISHPLE 128
Query: 190 IAVGLNGRVWVNAESPST 207
IAVG NG +W ++ T
Sbjct: 129 IAVGYNGLIWFHSRPSVT 146
>gi|18977941|ref|NP_579298.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus DSM
3638]
gi|397652062|ref|YP_006492643.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
gi|29336821|sp|Q8U0L8.1|ECR1_PYRFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|18893711|gb|AAL81693.1| hypothetical protein PF1569 [Pyrococcus furiosus DSM 3638]
gi|393189653|gb|AFN04351.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
Length = 264
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D VLG +VD K ++ VDI P A L + + R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVLGKIVDVKFSSWTVDIGSPYSATLKIQDYTDEKIDLLRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELG 183
Y +V N N EL+ G G L+ G + + TS+ + R++ ++ +
Sbjct: 120 YAKVKGINEVNNIELTT---KGMPFNGGPLRGGQIIKITSSKVPRVI--GKGGSMINMIK 174
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
K I VG NG +W+++++P L AI+ E S +
Sbjct: 175 KLTQSRIIVGQNGWIWISSKNPELEKLAIEAILKIERESHTR 216
>gi|323509221|dbj|BAJ77503.1| cgd3_780 [Cryptosporidium parvum]
Length = 262
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL----- 124
Y+P D V+G +++ + + V + LP +AFEG T+RN P G+ +
Sbjct: 55 YIPRKGDVVVGTIINKLGEFYKVSLNCSHDGILPDMAFEGATKRNKPNLVPGNYVCSRIN 114
Query: 125 ---------------------------YVRVVK----ANPGMNPELSCTDASGKAAEF-G 152
Y+ V+K N + + S +D S E
Sbjct: 115 YVDLESGEIELTCITPEEKKTWSNNENYLGVLKNSNYKNTNIIEDYSKSDRSSLPGESQS 174
Query: 153 LLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVS 212
+KDG ++++LL+ + VLE L K ++EI VG NG +W +A + ++L+
Sbjct: 175 CIKDGMTVTVPQSVAQILLADQSY-VLEALSKYFAYEICVGQNGIIWFSASNIKEMLLIM 233
Query: 213 NAIMNSESLSAVQQKIMVDKLLQRIK 238
+A+ + + Q +++++ +I+
Sbjct: 234 SALKVIPNCTKPQLEVILESFWSKIQ 259
>gi|170290984|ref|YP_001737800.1| exosome complex RNA-binding protein Rrp4 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|380876878|sp|B1L6N8.1|ECR1_KORCO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|170175064|gb|ACB08117.1| KH type 1 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 228
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE--IGSLLYVR 127
Y+P +D V+GIV + VDIR P LP+ R ++ K++ IG ++ +
Sbjct: 63 YIPKEDDLVIGIVSKISGNTILVDIRSPYQGALPI--QRRAERVDLKKYDLKIGDVILAK 120
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V++ G + + DA G G L+ GY+ E ++ +L L +
Sbjct: 121 -VRSFDGASSLILTIDAEG----LGKLEGGYLLEVDPAKVPRVIGKRQS-MLSMLKEATR 174
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV 224
EI V NGR+WV S ++++ A+ E S V
Sbjct: 175 SEIIVANNGRIWVKPPSVKELIVLEKALKKIEEESHV 211
>gi|440492449|gb|ELQ75014.1| Exosomal 3'-5' exoribonuclease complex subunit Rrp40, partial
[Trachipleistophora hominis]
Length = 139
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 106 AFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTG 165
AF T+RN PK IG L R+++ G +SC + G+L+ G++FE
Sbjct: 30 AFLNSTKRNRPKVNIGDFLLCRIIRV--GDVVFVSCCEEG-----LGVLEGGWVFEIEAW 82
Query: 166 LSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
+ L +L ++G+ +++A+GLNG +W++ ++ V V + I
Sbjct: 83 AVKTLFVRKN--ILSDIGRDYKYKVALGLNGMIWIDGKNVMVVKNVRDEI 130
>gi|349604369|gb|AEP99939.1| Exosome complex exonuclease RRP40-like protein, partial [Equus
caballus]
Length = 65
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 173 SPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDK 232
+P C +L+ELGK EI G+NGR+WV A++ ++++N + E ++A Q+K + +
Sbjct: 2 APDCEILQELGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSR 61
Query: 233 LLQ 235
L +
Sbjct: 62 LAE 64
>gi|357481445|ref|XP_003611008.1| hypothetical protein MTR_5g009450 [Medicago truncatula]
gi|355512343|gb|AES93966.1| hypothetical protein MTR_5g009450 [Medicago truncatula]
Length = 69
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 37/49 (75%), Gaps = 7/49 (14%)
Query: 22 LDLSSMTNQTIKLGGGLR--QECDSVSVIKAGKLRF-SKPNKYWVESSQ 67
+D+SS + LGGGLR Q+ D++SV+KAG+LRF SKPNKYWV S Q
Sbjct: 8 MDISS----DMALGGGLRLRQDHDAISVMKAGRLRFSSKPNKYWVGSGQ 52
>gi|154331770|ref|XP_001561702.1| putative exosome complex exonuclease RRP40 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059022|emb|CAM41494.1| putative exosome complex exonuclease RRP40 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 300
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 59/200 (29%)
Query: 60 KYWVES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPK 117
+Y V + + +RY P D VL I+ + +++ G + +A++ LAF+G T+ N P+
Sbjct: 58 RYMVPTPASRRYTPRAGDPVLAIIARKVSQHYYYCYIGSSALAYMDALAFDGATKVNRPR 117
Query: 118 FEIGSLLYVRV--------VKANP----------GMNPELSCTDA----------SGKAA 149
G ++Y V V P E SCT A SG+A
Sbjct: 118 LVEGDVVYCYVKPRAASSYVDGTPRSVASGVVDTAGEVETSCTAAEVGLPPKDWTSGEAV 177
Query: 150 EFGLLKDGYMFETSTGLSRMLL----------------------------SSPTCPVLEE 181
FG L G + R LL P +L+
Sbjct: 178 -FGPLHGGRVLHLPLAYVRRLLMPMGLSPGKASAQQQKSNRTEGEISGGEEVPASYLLQL 236
Query: 182 LGKQLSFEIAVGLNGRVWVN 201
LG+++ FE+AVGLNG VWV
Sbjct: 237 LGRRVPFEVAVGLNGLVWVR 256
>gi|449310622|gb|AGE92538.1| exosome complex exonuclease RRP40 [Leishmania braziliensis]
gi|449310646|gb|AGE92550.1| exosome complex exonuclease RRP40 [Leishmania braziliensis]
Length = 300
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 59/200 (29%)
Query: 60 KYWVES-SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPK 117
+Y V + + +RY P D VL I+ + +++ G + +A++ LAF+G T+ N P+
Sbjct: 58 RYMVPTPASRRYTPRAGDPVLAIIARKVSQHYYYCYIGSSALAYMDALAFDGATKVNRPR 117
Query: 118 FEIGSLLYVRV--------VKANP----------GMNPELSCTDA----------SGKAA 149
G ++Y V V P E SCT A SG+A
Sbjct: 118 LVEGDVVYCYVKPRAASSYVDGTPRSVASGVVDTAGEVETSCTAAEVGLPPKDWTSGEAV 177
Query: 150 EFGLLKDGYMFETSTGLSRMLL----------------------------SSPTCPVLEE 181
FG L G + R LL P +L+
Sbjct: 178 -FGPLHGGRVLHLPLAYVRRLLMPMGLSPSKASAQQQKRNRTEGEISGGEEVPASYLLQL 236
Query: 182 LGKQLSFEIAVGLNGRVWVN 201
LG+++ FE+AVGLNG VWV
Sbjct: 237 LGRRVPFEVAVGLNGLVWVR 256
>gi|76363623|ref|XP_888523.1| putative exosome complex exonuclease RRP40 [Leishmania major strain
Friedlin]
gi|11061593|emb|CAB97371.2| putative exosome complex exonuclease RRP40 [Leishmania major strain
Friedlin]
Length = 300
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 60/197 (30%)
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFV-DIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL 124
+ +RY P D VL I+ + +++ I G +A++ LAF+G T+ + P+ G ++
Sbjct: 65 ASRRYTPRAGDPVLAIIARKVSQHYYYCYIGGSALAYMDALAFDGATKVSRPRLVEGDVV 124
Query: 125 YVRVVKANPGMNP-------------------ELSCTDA----------SGKAAEFGLLK 155
Y VK G + E+SCT A SG+A FG L+
Sbjct: 125 YC-YVKPREGSSYVDGVHRSVASEVFDTTGEVEVSCTAAEVGLPPKDWTSGEAV-FGPLQ 182
Query: 156 DGYMFETSTGLSRMLLSS----------------------------PTCPVLEELGKQLS 187
G + R LL+ P +L+ LG+++
Sbjct: 183 GGRVLHLPLVYVRRLLTPMGSSPEKASAQQRKRDHTEGEGSDGDEVPASYLLQLLGRRVP 242
Query: 188 FEIAVGLNGRVWVNAES 204
FE+AVGLNG VWV S
Sbjct: 243 FEVAVGLNGLVWVRGLS 259
>gi|336477104|ref|YP_004616245.1| K-like, type 1, subgroup [Methanosalsum zhilinae DSM 4017]
gi|335930485|gb|AEH61026.1| K-like, type 1, subgroup [Methanosalsum zhilinae DSM 4017]
Length = 257
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 34/201 (16%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSK------PNKYWVESS 66
KIV+PG+ L S Q LG + +K GK+ S NK V
Sbjct: 4 KIVIPGE----LLSENEQNAGLG----------TYVKEGKVYSSLYGVLNIKNKVDVIPF 49
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF----EGGTRRNIPKFEIGS 122
+Y+P +D V+G VVD + N+F D+R P L V + E ++ ++G
Sbjct: 50 SGKYIPRAKDYVIGTVVDITSSNWFFDVRAPYTGMLHVSEYPKRVESSQMSDL--LDVGD 107
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+RV + M EL+ + K +K G + E + + R++ + ++
Sbjct: 108 SAILRVKDVDQSMKVELTLRERGLKR-----IKIGRVIEIPPSKVPRIIGHGGS--MVSM 160
Query: 182 LGKQLSFEIAVGLNGRVWVNA 202
L K+ EI VG NGR+W+N
Sbjct: 161 LKKETKCEIFVGQNGRIWING 181
>gi|332796514|ref|YP_004458014.1| KH type 1 domain-containing protein [Acidianus hospitalis W1]
gi|332694249|gb|AEE93716.1| KH type 1 domain protein [Acidianus hospitalis W1]
Length = 247
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 12/141 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG---GTRRNIPKF-EIGSLL 124
Y P V DTV+G++ D + + VDI+ P A+LP L+ G ++ K+ +IG +
Sbjct: 69 HYYPRVGDTVIGLIEDVELYGWIVDIKAPYSAYLPALSLLGRPVNIGEDLRKYLDIGDYV 128
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEELG 183
RV + +NP L+ K G L +G + + + R++ + + + E L
Sbjct: 129 IARVESFDRTINPVLTV-----KGKGLGRLNNGKIIDIMPVKVPRVIGKNKS--MYELLT 181
Query: 184 KQLSFEIAVGLNGRVWVNAES 204
+ E+ V NGR+W N S
Sbjct: 182 SETGCEMIVAQNGRIWANCPS 202
>gi|386002839|ref|YP_005921138.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
gi|357210895|gb|AET65515.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
Length = 232
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 31/199 (15%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRF-------SKPNKYWVESS 66
+VVPGD++ D + + + +K GK+R S +K V
Sbjct: 15 VVVPGDLLSDDPKASGEG--------------TYVKDGKVRSLLYGMASSYKDKVRVIPL 60
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN-IPKF-EIGSLL 124
+YVP DTV+G V D N+ V+I P L + N + K+ IGS +
Sbjct: 61 AGKYVPAPGDTVIGTVQDIVFSNWIVNINSPYEGLLHISELPRKIEMNEMSKYLRIGSSV 120
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELG 183
RV + M EL+ D G+L G + E S T + R++ ++ L
Sbjct: 121 MTRVKDVDSTMKVELTMND-----RRLGILTRGRVAEISPTRVPRLI--GKGGSMINMLK 173
Query: 184 KQLSFEIAVGLNGRVWVNA 202
K+L+ + VG NGR+WV+
Sbjct: 174 KELNCNLFVGQNGRIWVDG 192
>gi|123497178|ref|XP_001327124.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121910049|gb|EAY14901.1| hypothetical protein TVAG_380110 [Trichomonas vaginalis G3]
Length = 178
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129
Y D V+GIV D++ VDI A+LP +AF G T++ PKF+ G L+ V
Sbjct: 14 YKATAGDIVIGIVDRKNGDDWLVDIGSSHNAYLPGMAFAGVTKQTAPKFDKGDLVVAWVE 73
Query: 130 KANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL------G 183
+ LSC + + + G L TG + + L +L+E+
Sbjct: 74 QVPEAGEVLLSCLPRT-QNEKLGRL---------TGGTVLRLRQNDMKLLDEIEFDKLVA 123
Query: 184 KQLSFEIAVGLNGRVWVNAES 204
+ +A G+NGR W E+
Sbjct: 124 AKSKLNVAPGMNGRYWFETEN 144
>gi|341582109|ref|YP_004762601.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
gi|340809767|gb|AEK72924.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
Length = 256
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V D V+G +VD + N+ VDI P A L V A E R ++ K F+IG
Sbjct: 60 YIPEVGDNVIGKIVDVRFSNWTVDIGAPYQAGLRVQDATE--ERIDLAKTDLRRIFDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y R+ N E++ D + K F G L+ G + E T + + R++ ++
Sbjct: 118 IIYARIKAYN-----EINQIDLTTKGMPFRGGPLRGGQIVEITPSKVPRLI--GKGGSMI 170
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG VWV+ ++ L +AI+ S Q
Sbjct: 171 NLIKKLTGTRIIVGQNGWVWVSGKNEELEKLAIDAILKVNRESHTQ 216
>gi|375082089|ref|ZP_09729159.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
gi|374743302|gb|EHR79670.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
Length = 251
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGT---RRNIPK-FEIGSLL 124
Y+P V D+V+G +VD K N+ VDI P A L V A EG + ++ K F+IG ++
Sbjct: 60 YIPEVGDSVIGKIVDVKFSNWVVDIGAPYQATLRVQDAVEGKIDILKTDLRKLFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V N E++ D K F G LK G + + T + + R++ ++
Sbjct: 120 YAKVKAFN-----EINQIDLITKGMPFNGGPLKGGQLVKITPSKVPRLI--GKGGSMINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ + I VG NG VWV+ + L AI+ + S Q
Sbjct: 173 IKNLTNTRIIVGQNGWVWVSGRNEELEKLAIEAILKVDRESHTQ 216
>gi|333986694|ref|YP_004519301.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
gi|333824838|gb|AEG17500.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
Length = 275
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 16/193 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+IVVPGDV+ D + + G R+ + S + L + K V Q +Y+P
Sbjct: 8 EIVVPGDVLADEEYHSGR-----GTFRENSNICSSLVG--LVAIRDKKISVIPLQSKYIP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLYVRVVKA 131
D V+G V D + + +D+ P FLP G +R + + F++G +L++RVV
Sbjct: 61 KRGDVVIGEVTDIRFSMWNLDVNSPYSGFLPASDVFGKEKRELSRTFDVGDVLFLRVVDV 120
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
+ +L K G + G + T T + R++ ++ + + ++
Sbjct: 121 DEVKKVKLGL-----KGRGLGKFRGGILINITPTKVPRLI--GKKGSMINMIKDETRCDV 173
Query: 191 AVGLNGRVWVNAE 203
VG NG VWV E
Sbjct: 174 VVGQNGVVWVKGE 186
>gi|435852005|ref|YP_007313591.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
gi|433662635|gb|AGB50061.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
Length = 270
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 38/207 (18%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLR------FSKPNKYWVESS 66
+IVVPG + LS TN++ G G + +K GK+ + N+ V
Sbjct: 4 EIVVPGQL---LSDNTNES---GSG--------TYVKEGKVYSLLYGVANVKNRISVIPF 49
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF----EGGTRRNIPKFEIGS 122
+Y+P +D V+G V + + N+ DI P L V + E R I F IG
Sbjct: 50 SGKYIPSRKDLVIGTVFETTSSNWIFDIGSPYDGLLHVSEYPRRVESSMMREI--FNIGD 107
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGL--LKDGYMFETS-TGLSRMLLSSPTCPVL 179
+R+ + M EL+ E GL +K G + E T + R++ + + +
Sbjct: 108 CAILRIKDVDASMKIELTL-------REKGLRKIKGGRLLEVPPTKVPRVIGHNGSMVSM 160
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPS 206
L K+ EI VG NGR+W+N + +
Sbjct: 161 --LKKETDCEIFVGQNGRIWINGKDEN 185
>gi|389852858|ref|YP_006355092.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
gi|388250164|gb|AFK23017.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
Length = 264
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D V+G +VD K ++ VDI P A L + F R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLIRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V N E++ D + K F G L+ G + + T + + R++ ++
Sbjct: 120 YAKVKAIN-----EVNNIDLTTKGMPFNGGPLRGGQIVKITPSKVPRVI--GKGGSMINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG +WVN+++ + L AI+ + S +
Sbjct: 173 IKKLTMSRIIVGQNGWIWVNSKNDALEKLAIEAILKIDRESHTR 216
>gi|242399327|ref|YP_002994751.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
gi|242265720|gb|ACS90402.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
Length = 251
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V DTV+G +VD K N+ VDI P A L V EG R ++ K F+IG
Sbjct: 60 YIPEVGDTVIGKIVDVKFSNWIVDIGAPYQAGLRVQDVIEG--RVDVLKTDLRKIFDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y ++ N E++ D K F G LK G + + T + + R++ ++
Sbjct: 118 IIYAKIKAYN-----EINQIDLITKGMPFNGGPLKGGQLVKITPSKVPRLI--GKGGSMI 170
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ I VG NG VWV+ L AI+ S Q
Sbjct: 171 NMIKNLTGTRIIVGQNGWVWVSGRKEELEKLAIEAILKVNRESHTQ 216
>gi|345566085|gb|EGX49032.1| hypothetical protein AOL_s00079g253 [Arthrobotrys oligospora ATCC
24927]
Length = 308
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 103/267 (38%), Gaps = 68/267 (25%)
Query: 13 KIVVPGDVVLDLSSM---------------TNQTIKLGGGLRQECDSVSV----IKAGKL 53
+I++PGD + LS + ++++LG GL + S + G L
Sbjct: 9 EIILPGDPLPQLSPLLSPPSTETSTSTTDTKPRSLRLGPGLTLSPTTPSTPILPYRYGTL 68
Query: 54 RFSKPNKY---WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPT----IAFLPVLA 106
+ K + S+ + Y P D VL ++ A+ F V + T I F +
Sbjct: 69 NLTSHTKRPTASILSTPRHYHPSTNDPVLVTLLRTTAEQFIVQLAPYTPPAIIPFENYII 128
Query: 107 FEGGT----RRNIPKFEIGSLLYVRVVKANPGMNP-ELSCTDA----------------- 144
GT R++ P IG+ +Y RV + + ELS D
Sbjct: 129 NNAGTTASARKSRPNLPIGATIYARVAVVHKHLESVELSVPDPTFGEVISQKNTSSSSSS 188
Query: 145 -------SGKAAEFGLLKDG-----------YMFETSTGLSRMLLSSPTC--PVLEELGK 184
S + G Y+ TS ++++LL+ T P+L +
Sbjct: 189 NQKNKKESSTSISAGTTTGASSIANRAEVTPYILSTSQPMTKLLLAEETLGKPLLSAVAS 248
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLV 211
++ FE+ VG NGRVW++A + V+ V
Sbjct: 249 KVPFEMIVGKNGRVWIDATTQKEVIQV 275
>gi|212223174|ref|YP_002306410.1| exosome complex RNA-binding protein Rrp4 [Thermococcus onnurineus
NA1]
gi|212008131|gb|ACJ15513.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 256
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V D V+G +VD K N+ VDI P A L V A E R ++ K F+IG
Sbjct: 60 YIPEVGDNVIGKIVDVKFSNWTVDIGAPYQANLRVQDAVE--ERIDVLKTDLRKIFDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y ++ N E++ D + K F G L+ G + + T + + R++ + L
Sbjct: 118 IIYAKIKAYN-----EINQIDLTTKGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINL 172
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG VWV+ + L AI+ + S Q
Sbjct: 173 --IKKLTGTRIIVGQNGWVWVSGKKEELEKLAIEAILKVDRESHTQ 216
>gi|14591334|ref|NP_143412.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus horikoshii
OT3]
gi|29336583|sp|O59221.1|ECR1_PYRHO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|3257980|dbj|BAA30663.1| 265aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 265
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D V+G +VD K ++ VDI P +A L + F R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKIVDVKFSSWVVDIGAPYLANLKIQDFTDEKIDLLRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V E++ D + K F G LK G + + T + + R++ + ++
Sbjct: 120 YGKVKAIT-----EVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGS--MINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG +WVN ++ + L AI+ + S +
Sbjct: 173 IKKLTMTRIIVGQNGWIWVNGKNEALEKLAIEAILKIDRESHTK 216
>gi|390960834|ref|YP_006424668.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
gi|390519142|gb|AFL94874.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
Length = 256
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V D V+G +VD + N+ VDI P A L V A E R ++ K F+IG
Sbjct: 60 YIPEVGDNVIGKIVDVRFSNWTVDIGAPYQASLRVQDAVE--ERIDLAKTDLRKIFDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y ++ N E++ D + K F G L+ G + + T + + R++ + L
Sbjct: 118 IIYAKIKAYN-----EVNQIDLTTKGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINL 172
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG VWV+ + L AI+ + S Q
Sbjct: 173 --IKKLTGTRIIVGQNGWVWVSGKKEELEKLAIEAILKVDRESHTQ 216
>gi|159040950|ref|YP_001540202.1| exosome complex RNA-binding protein Rrp4 [Caldivirga maquilingensis
IC-167]
gi|157919785|gb|ABW01212.1| KH type 1 domain protein [Caldivirga maquilingensis IC-167]
Length = 240
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 9 NLVDK-IVVPGDVVLDLSSMTNQTIKLGG----GLRQECDSVSVIK-AGKLRFSKPNKYW 62
N+ D+ IV+PGD++ +N + +G G + +V++I G + KP +
Sbjct: 3 NVTDRMIVLPGDLI---GGRSNDYVIVGSVYWEGDKAYASTVAMINIKGDV---KPMEVQ 56
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-------LAFEGGTRRNI 115
V Y P D V+G V+D + + +DI+ P A+LP+ + RNI
Sbjct: 57 VIPLNGAYKPRQGDIVIGYVIDILVNGWEIDIKSPYSAYLPINEATLKPVDVVTADLRNI 116
Query: 116 PKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSP 174
IG ++ ++ N + ++ T K + G ++DG + E + R++
Sbjct: 117 --LNIGDIVLAKISDFNLAKDYPVTLTI---KESRLGRIEDGTVIEIDPVKVPRVI--GK 169
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKL 233
++ +L+ ++ VG NGR+WV + + VS I E S Q ++DK+
Sbjct: 170 RGSMVNMFKDELNCDVTVGQNGRIWVRCRNKRDELFVSQTIKFIEKES--HQSGLMDKV 226
>gi|307594972|ref|YP_003901289.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
gi|307550173|gb|ADN50238.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
Length = 245
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+IV+PGD ++ + + G + + D G + V Y P
Sbjct: 9 QIVLPGD------AIATKDYNVSGSIYWDGDVAYSAVVGLINIRGERDVEVIPLSGIYKP 62
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE--------IGSLL 124
V D V+G V+D + +DI+ P A+LP+ + T + + IG ++
Sbjct: 63 RVGDIVIGYVIDIGLTGWVIDIKSPYSAYLPI---QEATLKPVDLMTVDLKSLLGIGDIV 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEELG 183
R++ N + ++ T K A G ++ G + E ++ ++R++ ++
Sbjct: 120 LARIIDFNLTKDYPVTLT---LKEARLGRIEGGTLVEIDASKVARVI--GRRGSMVSIFS 174
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLS 222
++L ++ VG NGRVW+ P V+ I ES S
Sbjct: 175 EELGCDVTVGQNGRVWIRCRDPGDESFVARVIKLIESES 213
>gi|85000073|ref|XP_954755.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302901|emb|CAI75279.1| hypothetical protein, conserved [Theileria annulata]
Length = 162
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPKFEIGSL 123
S Y+P V D ++GI+ + D + V+I ++ + F G T++ P IG+
Sbjct: 3 SDNNIYIPKVGDHIIGIITNKNNDYYTVNINNLFNGYVMCIDGFRGTTKKYKPALNIGTF 62
Query: 124 --------------LYVRVVKANPGMNPELSCT------DASGKAAEFGLLKDGYMFETS 163
++ V N ELSC + S FG L G++F
Sbjct: 63 QIFIQLDNVNYRDVIFCYVYSVNNNNLIELSCITTDDNKNWSTNETYFGQLSGGFLFPVP 122
Query: 164 TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGR 197
++L ++ +L L +EI +G NGR
Sbjct: 123 LNYIKILYGEDN--LVTQLLSNLKYEIVLGFNGR 154
>gi|410671926|ref|YP_006924297.1| exosome complex RNA-binding protein Rrp4 [Methanolobus
psychrophilus R15]
gi|409171054|gb|AFV24929.1| exosome complex RNA-binding protein Rrp4 [Methanolobus
psychrophilus R15]
Length = 267
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF--EGGTRRNIPKFEIGSLLYV 126
+Y+P +D V+G V+D N+ +I P L + + + ++G +
Sbjct: 52 KYIPTSKDFVIGTVIDVTPSNWIFNIGSPYDGLLHASEYPRRVDSSQMAAIMDVGDSALL 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGL--LKDGYMFET-STGLSRMLLSSPTCPVLEELG 183
RV +P M ELS E GL LK G + E + R++ + ++ L
Sbjct: 112 RVQDVSPAMKVELSMR-------ERGLRPLKIGRLIEVVPAKVPRVIGHGGS--MVSMLK 162
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNA---IMNSESLSAVQQKI 228
K+ + EI VG NGRVW+N + + + L++NA IM ++ + +I
Sbjct: 163 KETNCEIFVGQNGRVWINGKD-NDMDLLANAIRMIMQQSHMNGLTDRI 209
>gi|408382266|ref|ZP_11179811.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
gi|407814922|gb|EKF85544.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
Length = 247
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 19/227 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+IV+PG+++ + + G G +E D V G L + K V Q +Y+P
Sbjct: 8 QIVIPGEILAEGDYHS------GRGTFKEEDKVCSSLVG-LVAVRDKKISVIPLQSKYIP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLYVRVVKA 131
D V+G V D + + +DI P LP G +R++ + F +G +L++RVV
Sbjct: 61 KRGDVVIGKVSDIRFSMWNLDINSPYSGILPAAEVFGKEKRDLNRAFNVGDVLFLRVVDV 120
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
+ +L K G + G + T T + R++ ++ + Q E+
Sbjct: 121 DEVKKVKLGL-----KGRGLGKFRGGILINITPTKVPRLI--GKKGSMINMIKDQTRCEV 173
Query: 191 AVGLNGRVWVNA--ESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
VG NG VWV E V V I S + +I D LL+
Sbjct: 174 VVGQNGVVWVKGKPEMERVVQKVVKTIEEEAHTSGLTDRIR-DMLLE 219
>gi|330835839|ref|YP_004410567.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera cuprina
Ar-4]
gi|329567978|gb|AEB96083.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera cuprina
Ar-4]
Length = 247
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 10 LVDK-IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQK 68
L DK IVVPGD++ + N I + ++ + G L +P +
Sbjct: 9 LQDKSIVVPGDLIAE----GNFQIPWSPYIIKQSNKYFASVVGILEIKEPVFEVIPLEGS 64
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------GTRRNIPKFEIG 121
Y P + DTV+ +V D + + VDI+ P A+LP + G RR I ++G
Sbjct: 65 HYYPRIGDTVIALVKDVEQYGWIVDIKAPYSAYLPAASLLGRPANVGEDLRRYI---DVG 121
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLE 180
+ ++ + +P LS K G + G + + + R++ + +++
Sbjct: 122 DFVIAKLESFDRTSDPTLSV-----KGKGLGRVSTGTVIDVLPVKVPRIVGKGRS--MMD 174
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + ++ V NGRVW N S ++ AI E S K + D++ + IK
Sbjct: 175 TLSTETGCDLIVAQNGRVWANCPSIEKEKILITAIRTIEQES--HTKGLTDRIKKLIK 230
>gi|223477967|ref|YP_002582205.1| putative exosome complex RNA-binding protein 1 [Thermococcus sp.
AM4]
gi|214033193|gb|EEB74021.1| Probable exosome complex RNA-binding protein 1 [Thermococcus sp.
AM4]
Length = 254
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V D VLG +VD + N+ VDI P A L V A E R ++ K ++IG
Sbjct: 60 YIPEVGDNVLGKIVDVRFSNWTVDIGAPYQANLRVQDAVE--ERIDLLKTDLRKIYDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y ++ N E++ D + K F G L+ G + T + + R++ ++
Sbjct: 118 IIYAKIKAYN-----EVNQIDLTTKGMPFKGGPLRGGQLVTITPSKVPRVI--GKGGSMI 170
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG VWV+ ++ L AI+ + S Q
Sbjct: 171 NMIKKLTGTRIIVGQNGWVWVSGKNDELEKLAVEAILKVDRESHTQ 216
>gi|424811891|ref|ZP_18237131.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756113|gb|EGQ39696.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
Length = 227
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 15 VVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCV 74
V PGD V + T + G G+ ++ + + AG +R+ + V S RY+P
Sbjct: 11 VAPGDTVFE-----GDTAEAGNGVYEDGEKLRSRYAGIVRY-QEGTVSVRPSNGRYIPQE 64
Query: 75 EDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNI--------PKFEIGSLLYV 126
D V+G V + ++ VD+ P + ++ +G I +++G + V
Sbjct: 65 GDIVIGEVKAVRYSSWMVDLNSP---YEGMMKVDGAVDEYIDLDEDELTEYYDVGDAIVV 121
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+V + G + L+ D + E G ++ E S L+ ++ EL ++
Sbjct: 122 KVSSVSEGFDVNLTMDDRRCRTLESGRIE-----EISPSKVSALIGK-GGNIIRELKEET 175
Query: 187 SFEIAVGLNGRVWVNA 202
+ G NGRVW+
Sbjct: 176 DTSMIAGQNGRVWIQG 191
>gi|410721459|ref|ZP_11360794.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
gi|410598916|gb|EKQ53479.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
Length = 248
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 19/227 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+IVVPG+++ + + G G E D V G L + K V Q +Y+P
Sbjct: 8 QIVVPGEILAEGDYHS------GRGTFTEEDKVCSSLVG-LVAVRDKKISVIPLQSKYIP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLYVRVVKA 131
D V+G V D + + +DI P LP G +R++ + F +G +L++RVV
Sbjct: 61 KRGDVVIGKVSDIRFSMWNLDINSPYSGILPAAEVFGKEKRDLNRAFNVGDVLFLRVVDV 120
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
+ +L K G + G + T T + R++ ++ + Q E+
Sbjct: 121 DEVKKVKLGL-----KGRGLGKFRGGILINITPTKVPRLI--GKKGSMINMIKDQTRCEV 173
Query: 191 AVGLNGRVWVNA--ESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
VG NG VWV E V V I S + +I D LL+
Sbjct: 174 VVGQNGVVWVKGKPEMERIVQKVVKTIEEEAHTSGLTDRIR-DMLLE 219
>gi|453086300|gb|EMF14342.1| hypothetical protein SEPMUDRAFT_41489 [Mycosphaerella populorum
SO2202]
Length = 311
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 1 MEAKPS-TANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIK---AGKLRFS 56
++A PS +N +++ PG ++ + Q ++ G DS S I+ AG L+
Sbjct: 3 IDALPSGHSNTSRQLITPGMII----TSDPQWMRGHGTFTAPSDSTSAIRSTVAGTLQ-- 56
Query: 57 KPNKYW-VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV--LAFEGGTRR 113
K NK V + RY P + D V+G +V+ ++ + VD+ P +A L + + GGT R
Sbjct: 57 KTNKLLSVVPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPVLASLQLSSINLPGGTLR 116
Query: 114 --------NIPK-FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETST 164
NI F G LL V + L ++ ++G L++GY S
Sbjct: 117 RRTGYDELNIRSFFGEGELLVAEVQSLFQDGSAALHT-----RSLKYGKLRNGYFMAVSG 171
Query: 165 GLSRMLL--SSPTCPVLEELGKQLSFEIAVGLNGRVWVNAES 204
+ S ++ GK ++ +G+NG VW+N +
Sbjct: 172 VGGGSGVVRSKRQIFTIQTRGKGGEVDVILGVNGYVWINKHA 213
>gi|332157780|ref|YP_004423059.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
gi|331033243|gb|AEC51055.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
Length = 268
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D V+G VVD K ++ VDI P A L + F R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKVVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V E++ D + K F G L+ G + + T + + R++ + ++
Sbjct: 120 YAKVKAIT-----EVNNIDLTTKGMPFNGGPLRGGQIVKITPSRVPRVIGRGGS--MINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG +W+N ++ L AI+ + S +
Sbjct: 173 IKKLTMTRIIVGQNGWIWINGKNEYLEKLAIEAILKIDRESHTK 216
>gi|305663897|ref|YP_003860185.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
gi|380876877|sp|E0SQX5.1|ECR1_IGNAA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|304378466|gb|ADM28305.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
Length = 253
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPKF-EIGSL 123
RY+P D V+GIVVD ++ +DI P ++ L + G + NI K+ EIG +
Sbjct: 74 RYIPREGDIVIGIVVDVTLSSWIIDINSPYLSVLNASDYLGRSFNPLTDNIRKYLEIGDV 133
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEEL 182
+ ++ + P L+ D G + DG + E ++R++ + +L L
Sbjct: 134 VVGKIATFDRSRGPILTVQDKG-----LGKVVDGSLIEIEPIKVARVIGKKKS--MLNML 186
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
+Q +I VG NGR+ + +P + AI ES
Sbjct: 187 IEQTKCDILVGNNGRIILRCPNPELEYIAILAIKKIES 224
>gi|48477467|ref|YP_023173.1| exosome complex RNA-binding protein Rrp4 [Picrophilus torridus DSM
9790]
gi|74568056|sp|Q6L222.1|ECR1_PICTO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|48430115|gb|AAT42980.1| 3'->5' exoribonuclease [Picrophilus torridus DSM 9790]
Length = 230
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 31/159 (19%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFL-----PVLAFEGGTRRNIPKFEIGSLL 124
Y+P + D V+G V+D A + VDI P + + P G R+ + +G +
Sbjct: 55 YMPRINDKVIGKVIDVSATMWTVDINSPYFSLMHMNDTPWHVTSGDLRKYL---NVGDYI 111
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-VLEELG 183
Y +V N LS D + + E G S + + +P P V+ + G
Sbjct: 112 YAKVSILNEIKESWLSLKDVNLRKLEEG--------------SIIYIKAPKVPRVIGKAG 157
Query: 184 KQLSF-------EIAVGLNGRVWVNAESPSTVVLVSNAI 215
++ +I VG NG +W++ E P V L NAI
Sbjct: 158 NMINMIKSETNTKIIVGQNGLIWIDGE-PENVDLAINAI 195
>gi|374633083|ref|ZP_09705450.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Metallosphaera yellowstonensis MK1]
gi|373524567|gb|EHP69444.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Metallosphaera yellowstonensis MK1]
Length = 244
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------GTRRNIPKFEIGS 122
Y P V DTV+G+V D + + DI+ P A+LP + G RR I ++G
Sbjct: 67 YYPKVGDTVVGLVEDVELYGWMTDIKAPYSAYLPASSLLGRPANVGEDLRRYI---DVGD 123
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ +V + +P LS K G + G + + + R++ + +LE
Sbjct: 124 YIIAKVDSFDRTTDPVLSV-----KGKGLGRVSSGIVIDIMPVKVPRVVGKGKS--MLEM 176
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + EI V NGRVW N S ++ AI E S K + D++ + I+
Sbjct: 177 LISETGCEILVAQNGRVWANCPSKEKENILIMAIRTIEKES--HTKGLTDRIKKLIR 231
>gi|294495470|ref|YP_003541963.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
gi|292666469|gb|ADE36318.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
Length = 255
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIG--SLLYV 126
+Y+P +D V+G V++ + N+ DI P L V + ++ + EI +
Sbjct: 52 KYIPSPKDYVIGYVIEVTSSNWIFDIGSPYDGLLHVSEYPKRVDSSMMRKEIDIWDCAIL 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
R+ N M ELS D + + G + D ++T + R++ + + ++ L K+
Sbjct: 112 RIKDVNTSMKVELSMKDRGLRRLDEGRIID----VSTTKVPRIIGHNGS--MVSMLKKES 165
Query: 187 SFEIAVGLNGRVWVNA--ESPSTVVLVSNAIMNSESLSAVQQKI 228
+ +I +G NGR+W+ E + + I N +S + I
Sbjct: 166 NCDIFIGQNGRIWLKGKDEDMNRLTQAIEIIENKSHISGLTNHI 209
>gi|240104094|ref|YP_002960403.1| exosome complex RNA-binding protein Rrp4 [Thermococcus
gammatolerans EJ3]
gi|239911648|gb|ACS34539.1| Exosome complex RNA-binding protein 1, Rrp4p-like protein (Rrp4p)
[Thermococcus gammatolerans EJ3]
Length = 254
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V D VLG +VD + N+ VDI P A L V A E R ++ K ++IG
Sbjct: 60 YIPEVGDNVLGKIVDVRFSNWTVDIGAPYQANLRVQDAVE--ERIDLLKTDLRKIYDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y ++ N E++ D + K F G L+ G + T + + R++ ++
Sbjct: 118 IIYAKIKAYN-----EVNQIDLTTKGMPFKGGPLRGGQLVTITPSKVPRVI--GKGGSMI 170
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ + I VG NG VWV+ ++ L AI+ + S Q
Sbjct: 171 NMIKRLTGTRIIVGQNGWVWVSGKNDELEKLAVEAILKVDRESHTQ 216
>gi|14520825|ref|NP_126300.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi GE5]
gi|29337011|sp|Q9V120.1|ECR1_PYRAB RecName: Full=Probable exosome complex RNA-binding protein 1
gi|5458041|emb|CAB49531.1| Predicted exosome subunit, RNA-binding protein rrp4 [Pyrococcus
abyssi GE5]
gi|380741367|tpe|CCE70001.1| TPA: exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi
GE5]
Length = 265
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D V+G +VD K ++ VDI P A L + F R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V E++ D + K F G LK G + + T + + R++ + ++
Sbjct: 120 YAKVKAIT-----EVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGS--MINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG +WV+ ++ + L AI+ + S +
Sbjct: 173 IKKLTMTRIIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTR 216
>gi|413926455|gb|AFW66387.1| hypothetical protein ZEAMMB73_465494 [Zea mays]
Length = 209
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 87 ADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYV 126
+ + VDI GP + FLP L+FEG RRNI KFE L YV
Sbjct: 172 SHSILVDIEGPNLVFLPKLSFEGNIRRNISKFEF--LTYV 209
>gi|15920656|ref|NP_376325.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus tokodaii str.
7]
gi|29336895|sp|Q975G7.1|ECR1_SULTO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|15621439|dbj|BAB65434.1| exosome RNA-binding subunit Rrp4 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------GTRRNIPKFEI 120
RY+P V DTV+G++ D + + +DI+ P A+LP +F G RR + +
Sbjct: 63 HRYIPKVGDTVIGLIEDVEIYGWVLDIKSPYSAYLPASSFLGRPVSPGEDLRRYL---NL 119
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVL 179
G + ++ + +NP LS K G + G + + + R++ + + +L
Sbjct: 120 GDYVIAKIETYDRTINPILSI-----KGKGLGRVSSGIVIDIPPVKVPRVIGKNRS--ML 172
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ L + EI V NGR+ N + ++ A++ E++ ++++ + L ++I+
Sbjct: 173 DTLTSETGCEILVAQNGRILANCATK----MIEEALV--EAIQIIEKESHIKGLTEKIR 225
>gi|71026825|ref|XP_763056.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350009|gb|EAN30773.1| hypothetical protein TP03_0037 [Theileria parva]
Length = 143
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 106 AFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCT------DASGKAAEFGLLKDGYM 159
F G T++ P IG +++ V G+ ELSC + S FG L +G++
Sbjct: 5 GFRGTTKKYKPNLTIGDVVFCYVYGMYDGL-IELSCVTMDDNKNWSTNETYFGPLSNGFL 63
Query: 160 FETSTGLSRMLLSSPTCPVL-----EELG--KQLSFEIAVGLNGRVWVNAESPSTVVLVS 212
T L + T ++ EEL + L +EI +G NGRVW+ S + +S
Sbjct: 64 --TQLPLQHVQSYVNTVNIMFRLYNEELEVLRGLKYEIVLGFNGRVWIGNTSNELKLKIS 121
Query: 213 NAIMNSESLSAVQQKIMVDKLL 234
I S +L+ Q K + +
Sbjct: 122 RFIKLSHNLNQQQLKQLFKHIF 143
>gi|148642303|ref|YP_001272816.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
smithii ATCC 35061]
gi|166919579|sp|A5UJS0.1|ECR1_METS3 RecName: Full=Probable exosome complex RNA-binding protein 1
gi|148551320|gb|ABQ86448.1| RNA-binding protein Rrp4 [Methanobrevibacter smithii ATCC 35061]
Length = 298
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 14 IVVPGDVVLDLSSMTNQ-TIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PG+V+ D + + T K G + + ++ K+R V + +YVP
Sbjct: 9 LVIPGEVLADDEYYSGRGTFKENGKICSSLMGLVSLRNKKIR--------VIPLKSKYVP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLYVRVVKA 131
D V+G + D + + VDI P LP G ++ + K F++G +L++RVV
Sbjct: 61 KKGDVVIGKIKDVRFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVLFLRVVDV 120
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
+ +L K G + G + + T T + R++ ++ + + + +I
Sbjct: 121 DEVKKVKLGL-----KGRGMGKFRGGIIVDITPTKVPRLI--GKKGSMINMIKDKTNCKI 173
Query: 191 AVGLNGRVWVNAES 204
VG NG VWV E
Sbjct: 174 IVGQNGLVWVKGEE 187
>gi|407044151|gb|EKE42405.1| hypothetical protein ENU1_022440 [Entamoeba nuttalli P19]
Length = 95
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 151 FGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVL 210
FG L+ G+ F + R ++ C VL +G+ FEIAVG+NG VWV + V+
Sbjct: 5 FGELQGGWAFSVPQSMCRRIMGDGCC-VLTCIGEYTPFEIAVGINGMVWVRTPNVLNDVI 63
Query: 211 VSNAIMNSESLSAVQQKI 228
V + I+ + L V++ +
Sbjct: 64 VESCIV--QCLGVVEKNV 79
>gi|222444526|ref|ZP_03607041.1| hypothetical protein METSMIALI_00138 [Methanobrevibacter smithii
DSM 2375]
gi|261350935|ref|ZP_05976352.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
gi|222434091|gb|EEE41256.1| KH domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860273|gb|EFC92571.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
Length = 298
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 14 IVVPGDVVLDLSSMTNQ-TIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PG+V+ D + + T K G + + ++ K+R V + +YVP
Sbjct: 9 LVIPGEVLADDEYYSGRGTFKENGKICSSLMGLVSLRNKKIR--------VIPLKSKYVP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLYVRVVKA 131
D V+G + D + + VDI P LP G ++ + K F++G +L++RVV
Sbjct: 61 KKGDVVIGKIKDVRFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVLFLRVVDV 120
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
+ +L K G + G + + T T + R++ ++ + + + +I
Sbjct: 121 DEVKKVKLGL-----KGRGMGKFRGGIIVDITPTKVPRLI--GKKGSMINMIKDKTNCKI 173
Query: 191 AVGLNGRVWVNAES 204
VG NG VWV E
Sbjct: 174 IVGQNGLVWVKGEE 187
>gi|315229926|ref|YP_004070362.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
gi|315182954|gb|ADT83139.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
Length = 255
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGT---RRNIPK-FEIGSLL 124
Y+P V D V+G +VD K ++ VDI P A L + A E + ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKIVDVKFSSWTVDIGAPYQATLRIQDAVEEKIDLLKTDLRKIFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V N E++ D + K F G LK G + + T + + R++ + L
Sbjct: 120 YAKVKAFN-----EVNQIDLTTKGMPFNGGPLKGGQIVKITPSKVPRLIGKGGSMINL-- 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG VWV+ + AI+ + S Q
Sbjct: 173 IKKMTQTRIIVGQNGWVWVSGRKEELERVAIEAILKVDRESHTQ 216
>gi|424814252|ref|ZP_18239430.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
gi|339757868|gb|EGQ43125.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
Length = 231
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYV 71
+ IVVPGDV+ + +K G+ E + G +++ N V+ RY+
Sbjct: 8 NDIVVPGDVITE-----EDNVKPNSGVYTEEGKIYSQHIGTVKYGSGNVR-VQPMDGRYI 61
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLA----FEGGTRRNIPKF-EIGSLLYV 126
P D V+ V + +D+ P L + + ++ F ++G +
Sbjct: 62 PEEGDVVIAEVTRVSYSRWNLDMDSPYEGTLDISEASDQYVDLDEDDLTDFYDVGDAVVA 121
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+V + M+ +L+ D + E G + + + + R++ T +++++ ++
Sbjct: 122 KVTSVSESMDVDLTMLDDRCRKLEEGRI----INISPHKVPRVIGRQGT--MVQQINEKT 175
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ + VG NG VW+N E+P+ +E+++ V+++ D L RI
Sbjct: 176 NCHVIVGQNGLVWINGENPTVA---------AEAVNKVEEEAHTDGLTDRI 217
>gi|304314831|ref|YP_003849978.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588290|gb|ADL58665.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 287
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLY 125
Q +Y+P D V+G + D + + +DI P LP G +R + F+IG +L
Sbjct: 55 QSKYIPKRGDVVIGEITDIRFSMWGLDINSPYSGLLPASEVFGKEKRELENVFDIGDVLL 114
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYM-FETSTGLSRMLLSSPTCPVLEELGK 184
+RVV + +L K G +DG + + T T + R++ ++ + +
Sbjct: 115 LRVVDVDEVKKVKLGL-----KGRGLGKFRDGILVYITPTKVPRLI--GKRGSMINMVKE 167
Query: 185 QLSFEIAVGLNGRVWVNAE 203
+ +I VG NG VW+ E
Sbjct: 168 KTHCDIVVGQNGVVWIKGE 186
>gi|284174963|ref|ZP_06388932.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus solfataricus
98/2]
gi|384434252|ref|YP_005643610.1| K-like, type 1, subgroup [Sulfolobus solfataricus 98/2]
gi|261602406|gb|ACX92009.1| K-like, type 1, subgroup [Sulfolobus solfataricus 98/2]
Length = 247
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT-------RRNIPKFEIGS 122
Y P + D V+G+V D + + VDI+ P A+LP G + RR + ++G
Sbjct: 66 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYL---DVGD 122
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ R+ + ++P LS K + G + +G + + + R++ + + + E
Sbjct: 123 YVIARIENFDRSIDPVLSV-----KGKDLGRVSNGIVIDIMPVKVPRVIGKNKS--MYET 175
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + I V NGR+W S + ++ AI E+ S + K + D++ Q I+
Sbjct: 176 LTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHI--KGLTDRIKQFIE 230
>gi|145579806|pdb|2JEB|I Chain I, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
Length = 251
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT-------RRNIPKFEIGS 122
Y P + D V+G+V D + + VDI+ P A+LP G + RR + ++G
Sbjct: 70 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYL---DVGD 126
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ R+ + ++P LS K + G + +G + + + R++ + + + E
Sbjct: 127 YVIARIENFDRSIDPVLSV-----KGKDLGRVSNGIVIDIMPVKVPRVIGKNKS--MYET 179
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + I V NGR+W S + ++ AI E+ S + K + D++ Q I+
Sbjct: 180 LTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHI--KGLTDRIKQFIE 234
>gi|15897637|ref|NP_342242.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus solfataricus
P2]
gi|29337008|sp|Q9UXC4.1|ECR1_SULSO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|299689090|pdb|3L7Z|C Chain C, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689093|pdb|3L7Z|F Chain F, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689096|pdb|3L7Z|I Chain I, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|6015740|emb|CAB57567.1| hypothetical protein [Sulfolobus solfataricus P2]
gi|13813904|gb|AAK41032.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
Length = 249
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT-------RRNIPKFEIGS 122
Y P + D V+G+V D + + VDI+ P A+LP G + RR + ++G
Sbjct: 68 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYL---DVGD 124
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ R+ + ++P LS K + G + +G + + + R++ + + + E
Sbjct: 125 YVIARIENFDRSIDPVLSV-----KGKDLGRVSNGIVIDIMPVKVPRVIGKNKS--MYET 177
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + I V NGR+W S + ++ AI E+ S + K + D++ Q I+
Sbjct: 178 LTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHI--KGLTDRIKQFIE 232
>gi|57641570|ref|YP_184048.1| exosome complex RNA-binding protein Rrp4 [Thermococcus kodakarensis
KOD1]
gi|73919275|sp|Q5JIR5.1|ECR1_PYRKO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|57159894|dbj|BAD85824.1| exosome subunit Rrp4p homolog, RNA-binding protein [Thermococcus
kodakarensis KOD1]
Length = 257
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V D VLG +VD K ++ VDI P A L V A E R ++ K F+IG
Sbjct: 60 YIPEVGDNVLGKIVDVKFSSWTVDIGAPYQASLRVQDAVE--ERIDLLKTDLRKIFDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y +V N E++ D + K F G L+ G + T + + R++ ++
Sbjct: 118 IIYAKVKAFN-----EVNQIDLTTKGMPFKGGPLRGGQLVTITPSKVPRLI--GKGGSMI 170
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ I VG NG VWV+ ++ L AI+ + S Q
Sbjct: 171 NMIKTLTGTRIIVGQNGWVWVSGKNDELERLAIEAILKVDRESHTQ 216
>gi|337283873|ref|YP_004623347.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus yayanosii CH1]
gi|334899807|gb|AEH24075.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus yayanosii CH1]
Length = 257
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 23/179 (12%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D V+G VVD K ++ VDI P A L + + ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKVVDVKFSSWTVDIGAPYQATLRIQDHTDEKIDLIKTDLKKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V N E++ D + K F G L+ G + + T + + R++ + +
Sbjct: 120 YAKVKAIN-----EVNNIDLTTKGMPFNGGPLRGGQIVKITPSKVPRLIGKGGS---MIN 171
Query: 182 LGKQLSF-EIAVGLNGRVWVNAESPSTVVLVSNAIM------NSESLSAVQQKIMVDKL 233
+ K+L+ I VG NG VW++ + L AI+ +++ L+ +++++D+L
Sbjct: 172 MIKRLTMTRIIVGQNGWVWISGKKEELEKLAIEAILKVDRESHTKGLTDRIKELLLDRL 230
>gi|126031139|pdb|2JE6|I Chain I, Structure Of A 9-Subunit Archaeal Exosome
gi|145579803|pdb|2JEA|I Chain I, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|407943803|pdb|4BA1|I Chain I, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943806|pdb|4BA2|I Chain I, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 251
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT-------RRNIPKFEIGS 122
Y P + D V+G+V D + + VDI+ P A+LP G + RR + ++G
Sbjct: 70 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYL---DVGD 126
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ R+ + ++P LS K + G + +G + + + R++ + + + E
Sbjct: 127 YVIARIENFDRSIDPVLSV-----KGKDLGRVSNGIVIDIMPVKVPRVIGKNKS--MYET 179
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + I V NGR+W S + ++ AI E+ S + K + D++ Q I+
Sbjct: 180 LTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHI--KGLTDRIKQFIE 234
>gi|73669983|ref|YP_305998.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina barkeri
str. Fusaro]
gi|121731980|sp|Q469M4.1|ECR1_METBF RecName: Full=Probable exosome complex RNA-binding protein 1
gi|72397145|gb|AAZ71418.1| ribosomal RNA-processing protein RRP4 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD++ + + K G G + D + + G + K +K V Y+P
Sbjct: 4 KIVIPGDLI------SENSKKAGYGTYVKNDKIYSLFCG-IENLKEDKVGVIPLAGVYIP 56
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG--GTRRNIPKFEIGSLLYVRVVK 130
D V+GIV+ N+ +DI P V + +R +G + +RV
Sbjct: 57 SANDVVIGIVIVVTPSNWIMDIASPYDGLFHVSEYPRRIESREMHEVLNVGDSIILRVKD 116
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLSFE 189
+ M EL+ D+S F LK G + E + R++ + ++ L K+ +
Sbjct: 117 VDNSMKVELALRDSS-----FHKLKTGQIVEVEPVKVPRVIGHGGS--MISMLKKETNCS 169
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
I VG NGR+W++ + V L+S A+ E + Q+ + D++ +K
Sbjct: 170 IFVGQNGRIWIDGKD-DDVELLSKALRKIE--AEAQRSGLTDRIYNFLK 215
>gi|227827676|ref|YP_002829456.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
M.14.25]
gi|227830373|ref|YP_002832153.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
L.S.2.15]
gi|229579191|ref|YP_002837589.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
Y.G.57.14]
gi|229582057|ref|YP_002840456.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
Y.N.15.51]
gi|229584880|ref|YP_002843382.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
M.16.27]
gi|238619847|ref|YP_002914673.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
M.16.4]
gi|284997879|ref|YP_003419646.1| KH, type 1, domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|227456821|gb|ACP35508.1| RNA binding S1 domain protein [Sulfolobus islandicus L.S.2.15]
gi|227459472|gb|ACP38158.1| KH type 1 domain protein [Sulfolobus islandicus M.14.25]
gi|228009905|gb|ACP45667.1| KH type 1 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012773|gb|ACP48534.1| KH type 1 domain protein [Sulfolobus islandicus Y.N.15.51]
gi|228019930|gb|ACP55337.1| KH type 1 domain protein [Sulfolobus islandicus M.16.27]
gi|238380917|gb|ACR42005.1| KH type 1 domain protein [Sulfolobus islandicus M.16.4]
gi|284445774|gb|ADB87276.1| KH, type 1, domain protein [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT-------RRNIPKFEIGS 122
Y P V D V+G+V D + + VDI+ P A+LP G + RR + ++G
Sbjct: 66 YYPKVNDVVIGLVEDVEIYGWVVDIKSPYKAYLPASNLLGRSVNVGEDLRRYL---DVGD 122
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ R+ + ++P LS K + G + +G + + + R++ + + + E
Sbjct: 123 YVIARIENFDRSIDPVLSV-----KGKDLGRVNNGIVIDIMPVKVPRVIGKNKS--MYET 175
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + + V NGR+W S + ++ AI E+ S + K + D++ Q I+
Sbjct: 176 LTSKSGCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHI--KGLTDRIKQFIE 230
>gi|385773348|ref|YP_005645914.1| KH type 1 domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|385775986|ref|YP_005648554.1| KH type 1 domain-containing protein [Sulfolobus islandicus REY15A]
gi|323474734|gb|ADX85340.1| KH type 1 domain protein [Sulfolobus islandicus REY15A]
gi|323477462|gb|ADX82700.1| KH type 1 domain protein [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT-------RRNIPKFEIGS 122
Y P V D V+G+V D + + VDI+ P A+LP G + RR + ++G
Sbjct: 66 YYPKVNDVVIGLVEDVEIYGWVVDIKSPYKAYLPASNLLGRSVNVGEDLRRYL---DVGD 122
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ R+ + ++P LS K + G + +G + + + R++ + + + E
Sbjct: 123 YVIARIENFDRSIDPVLSV-----KGKDLGRVNNGIVIDIMPVKVPRVIGKNKS--MYET 175
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + + V NGR+W S + ++ AI E+ S + K + D++ Q I+
Sbjct: 176 LTSKSGCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHI--KGLTDRIKQFIE 230
>gi|126644486|ref|XP_001388094.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117322|gb|EAZ51422.1| hypothetical protein cgd3_780 [Cryptosporidium parvum Iowa II]
Length = 211
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 38/151 (25%)
Query: 102 LPVLAFEGGTRRNIPKFEIGSLL--------------------------------YVRVV 129
LP +AFEG T+RN P G+ + Y+ V+
Sbjct: 27 LPDMAFEGATKRNKPNLVPGNYVCSRINYVDLESGEIELTCITPEEKKTWSNNENYLGVL 86
Query: 130 K----ANPGMNPELSCTDASGKAAEF-GLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
K N + + S +D S E +KDG ++++LL+ + VLE L K
Sbjct: 87 KNSNYKNTNIIEDYSKSDRSSLPGESQSCIKDGMTVTVPQSVAQILLADQS-YVLEALSK 145
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
++EI VG NG +W +A + ++L+ +A+
Sbjct: 146 YFAYEICVGQNGIIWFSASNIKEMLLIMSAL 176
>gi|385806379|ref|YP_005842777.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
gi|383796242|gb|AFH43325.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
Length = 242
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 33/202 (16%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFS--------KPNKYWVES 65
IV+PGD+V G + E +S+ + G FS K +K +
Sbjct: 13 IVLPGDLV--------------GEGKIETNSLYIYNIGNKYFSSIIGMVEIKDDKLFFYP 58
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV----LAFEGGTRRNIPKF-EI 120
++ Y+P D V+G++ D + VD+ P LPV L T + KF I
Sbjct: 59 KEQIYIPKPNDLVIGLITDVGPTYWDVDLNSPYEGQLPVSETPLRQTHATVDTMRKFLSI 118
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLE 180
G + ++V+ + +P L+ GK G + G + + + L++ ++E
Sbjct: 119 GDFVALKVLSFDRLRDPLLTM---RGKG--LGKIYGGKVIDIAQHAVNSLINRKRA-LVE 172
Query: 181 ELGKQLSFEIAVGLNGRVWVNA 202
+ K+ EI + NGRVW+
Sbjct: 173 AIVKETKTEILISNNGRVWIKG 194
>gi|409096214|ref|ZP_11216238.1| exosome complex RNA-binding protein Rrp4 [Thermococcus zilligii
AN1]
Length = 258
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGT---RRNIPK-FEIGSLL 124
Y+P V D VLG +VD K ++ VDI P A L A E + ++ K F+IG ++
Sbjct: 60 YIPEVGDNVLGKIVDVKFSSWTVDIGAPYQATLRAQDAVEEKIDLLKTDLRKIFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V + E++ D + K F G L+ G + TS+ + R++ ++
Sbjct: 120 YAKVKAFD-----EVNQIDLTTKGMPFNGGPLRGGQLVTITSSKVPRVI--GKGGSMINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM--NSESLSAVQQKIMVDKLLQRIK 238
+ K I VG NG VWV+ + L AI+ N ES ++ + + LL R++
Sbjct: 173 IKKLTGTRIIVGQNGWVWVSGTNRELEELAVEAILKVNRESHTSGLTDRVKEFLLSRLQ 231
>gi|21228724|ref|NP_634646.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina mazei Go1]
gi|29336796|sp|Q8PTT9.1|ECR1_METMA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|20907233|gb|AAM32318.1| hypothetical protein MM_2622 [Methanosarcina mazei Go1]
Length = 260
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD+ +++ K G G + D + G + K +K V Y+P
Sbjct: 4 KIVIPGDL------LSDDVKKSGYGTYVKNDKIYSSLCG-IESLKEDKVGVIPLAGAYIP 56
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR-RNIPK-FEIGSLLYVRVVK 130
V D V+G+V+ N+ +DI P L V + R +P+ ++G + +RV
Sbjct: 57 SVNDVVIGVVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRD 116
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLSFE 189
+ M EL+ D + L+ G + E + R++ + ++ L K+ +
Sbjct: 117 VDSSMKIELALRDPN-----LHKLRTGQIVEVEPVKVPRVIGHGGS--MISMLKKETNCS 169
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
I VG NGR+W++ + + L+S A+ E + Q+ + D++ +K
Sbjct: 170 IFVGQNGRIWIDGKD-EDIELLSKALRKIE--AEAQRSGLTDRIYNFLK 215
>gi|340344303|ref|ZP_08667435.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519444|gb|EGP93167.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 226
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 13/162 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSL 123
+Y+P ++D V+G VV + ++ +DI + FLP F K + G L
Sbjct: 55 KYIPKIDDLVIGKVVSHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELSSKLKAGDL 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTG-LSRMLLSSPTCPVLEEL 182
+ R+ + +P ++ D + G + G++ ST + R++ T + E+
Sbjct: 115 VAARIANFDRTRDPLVTIAD-----RDLGKIDSGHLVSISTSKVPRLIGKRGTMIQMIEM 169
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV 224
+ I +G NG + V+ E+P ++ AI + ++ V
Sbjct: 170 ATNAA--ITIGQNGWIVVSCETPEGLLKAKKAIKMVDEMAHV 209
>gi|154316807|ref|XP_001557724.1| hypothetical protein BC1G_03821 [Botryotinia fuckeliana B05.10]
gi|347829366|emb|CCD45063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 337
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 30/204 (14%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PG+V+ D G G S +I K NK V + + RY P
Sbjct: 48 IVTPGEVITDDPQWMR-----GHGTYVAPASTEIIGTVAGTVQKTNKLLSVRALRARYTP 102
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK---------FEIG 121
+ D V+G +++ ++ + VDI P +A LP+ A GG +R + F G
Sbjct: 103 EIGDLVVGRIIEVQSKRWRVDIGAPVLANLPLSAINLPGGIQRKRTETDELQIRTFFSEG 162
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-----TGLSRMLLSSPTC 176
LL V + + L ++ ++G L++G S G+ R T
Sbjct: 163 DLLVAEVQQLYQDGSASLHT-----RSLKYGKLRNGVFMAVSGTGGGGGVVRARRQVWTI 217
Query: 177 PVLEELGKQLSFEIAVGLNGRVWV 200
GK +I +G+NG +W+
Sbjct: 218 DTAHNGGK---VDIILGVNGYIWI 238
>gi|238506042|ref|XP_002384223.1| exosome complex exonuclease Rrp4, putative [Aspergillus flavus
NRRL3357]
gi|220690337|gb|EED46687.1| exosome complex exonuclease Rrp4, putative [Aspergillus flavus
NRRL3357]
Length = 372
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 25/219 (11%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQ 67
++ +V PG++V D + G G S S+I K NK V+ +
Sbjct: 70 DITSGVVTPGEIVTD-----DPQWMRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLR 124
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGT-RRNIPKFEI---- 120
RY P + D V+G +V+ ++ + VD+ P +A LP+ A GG RR E+
Sbjct: 125 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 184
Query: 121 ----GSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDG-YMFETSTGLS--RMLLSS 173
G L+ V + L ++ ++G L++G ++ T TG S ++ S
Sbjct: 185 FFSEGDLVVAEVQTVHSDGAASLHT-----RSLKYGKLRNGVFLAVTGTGGSGASIVRSR 239
Query: 174 PTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVS 212
+ ++ +G+NG +W++ + T S
Sbjct: 240 RQVWTVNTANGGGDVDVILGVNGYIWISKHADDTAAACS 278
>gi|408404986|ref|YP_006862969.1| exosome complex RNA-binding protein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365582|gb|AFU59312.1| exosome complex RNA-binding protein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 263
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG----TRRNIPK-FEIGSLL 124
Y+P V D V+G V+D + ++ VDI A LP G R ++ + F IG ++
Sbjct: 54 YIPRVNDLVIGKVIDHSSLSWEVDINSCFSAHLPAQDVFGRDFSPARDDMSRHFAIGDMI 113
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELG 183
R++ + +P L+ D + G + G + + S T + R++ +++ +
Sbjct: 114 TARIMAFDRTRDPMLTVQD-----RDLGKIPRGEVLKISATRVPRLI--GKRGSMIQTIE 166
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ + +G NG V V +P + L AI V+++ L QRIK
Sbjct: 167 QATQTRVLIGQNGIVVVTGRTPEGIKLAVRAI------KMVEEEAHTANLTQRIK 215
>gi|288560610|ref|YP_003424096.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
gi|288543320|gb|ADC47204.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
Length = 491
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLY 125
+ +Y+P D V+G + D + + VDI P LP G ++ + + F+IG +L+
Sbjct: 60 KSKYIPKKGDVVIGKIDDVRFSMWGVDINSPYSGILPASEVFGREKKELSRVFDIGDVLF 119
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGK 184
+R+V + +L K G + G + + + T + R++ ++ +
Sbjct: 120 LRIVDVDEVKKVKLGL-----KGRGMGKFRGGVIVDIAPTKVPRLI--GKKGSMINMIKD 172
Query: 185 QLSFEIAVGLNGRVWVNA 202
+ +I VG NG VWV
Sbjct: 173 KTGCKIVVGQNGLVWVKG 190
>gi|156043601|ref|XP_001588357.1| hypothetical protein SS1G_10804 [Sclerotinia sclerotiorum 1980]
gi|154695191|gb|EDN94929.1| hypothetical protein SS1G_10804 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 328
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 30/217 (13%)
Query: 1 MEAKPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK 60
++ +P+ IV PG+++ D G G S +I K NK
Sbjct: 35 LDMRPAKRAKHQDIVTPGEIITDDPQWMR-----GHGTYVAPGSTEIIGTVAGTVQKTNK 89
Query: 61 YW-VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK 117
V + RY P + D V+G +++ ++ + VDI P +A LP+ A GG +R +
Sbjct: 90 LLSVRPLRARYTPEIGDLVVGRIIEVQSKRWRVDIGAPVLANLPLSAINLPGGIQRKRTE 149
Query: 118 ---------FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS----- 163
F G LL V + + L ++ ++G L++G S
Sbjct: 150 TDELQIRTFFSEGDLLVAEVQQLYQDGSASLHT-----RSLKYGKLRNGVFMAVSGTGGG 204
Query: 164 TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
G+ R T + GK ++ +G+NG +W+
Sbjct: 205 GGVVRARRQVWTIDTVHNGGK---VDVILGVNGFIWI 238
>gi|452211129|ref|YP_007491243.1| Exosome complex RNA-binding protein 1 [Methanosarcina mazei Tuc01]
gi|452101031|gb|AGF97971.1| Exosome complex RNA-binding protein 1 [Methanosarcina mazei Tuc01]
Length = 247
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD+ +++ K G G + D + G + K +K V Y+P
Sbjct: 4 KIVIPGDL------LSDDVKKSGYGTYVKNDKIYSSLCG-IESLKEDKVGVIPLAGAYIP 56
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR-RNIPK-FEIGSLLYVRVVK 130
+ D V+G+V+ N+ +DI P L V + R +P+ ++G + +RV
Sbjct: 57 SMNDVVIGVVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRD 116
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLSFE 189
+ M EL+ D + L+ G + E + R++ + ++ L K+ +
Sbjct: 117 VDSSMKIELALRDPN-----LHKLRTGQIVEVEPVKVPRVIGHGGS--MISMLKKETNCS 169
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
I VG NGR+W++ + + L+S A+ E + Q+ + D++ +K
Sbjct: 170 IFVGQNGRIWIDGKD-EDIELLSKALRKIE--AEAQRSGLTDRIYNFLK 215
>gi|327310390|ref|YP_004337287.1| exosome complex RNA-binding protein Rrp4 [Thermoproteus uzoniensis
768-20]
gi|326946869|gb|AEA11975.1| exosome complex RNA-binding protein Rrp4 [Thermoproteus uzoniensis
768-20]
Length = 236
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+++ PGD+V + + G + SV +++ + NK V + Y P
Sbjct: 8 QVIFPGDLVATSDESVEGAVYIDDG-KYRASSVGLVEF------RDNKIVVVPLEGSYRP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLL-----YVR 127
D V+G V D A + VD+R P A+LPV + ++ K + SLL +
Sbjct: 61 KPGDVVIGYVTDVLASGWEVDVRAPLAAWLPV-SEATAKYIDLEKTSLTSLLNIGDAVIA 119
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRML-LSSPTCPVLEELGKQ 185
VVK + + E + G ++ G++ E S + R++ + ELG
Sbjct: 120 VVK-DVDLTDEFPVMLTLREGERLGKIESGFVVELSPVKVPRVIGKKGSMISTISELG-- 176
Query: 186 LSFEIAVGLNGRVWVNAESP 205
+I VG NGR+W P
Sbjct: 177 --CDIIVGQNGRLWAKCPGP 194
>gi|361124035|gb|EHK96159.1| putative Exosome complex component rrp4 [Glarea lozoyensis 74030]
Length = 222
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRY 70
+ IV PG+VV D +Q ++ G + AG ++ K NK V + RY
Sbjct: 49 EDIVTPGEVVTD----EDQWMRGHGTYHNHAREIIATVAGTVQ--KTNKLLSVRPLRARY 102
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 103 TPEIGDLVVGRIVEVQSKKWRVDVGAPVLASLPLSAI 139
>gi|400598530|gb|EJP66239.1| exosome complex exonuclease RRP4 [Beauveria bassiana ARSEF 2860]
Length = 327
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 16 VPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVPCV 74
V GDV + +S + G G S S+ + ++ NK V + RY P +
Sbjct: 35 VQGDVTMRRASKRQR----GHGTYVPHGSTSITSSLAGTLTRTNKLLSVRPLRARYTPEI 90
Query: 75 EDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK---------FEIGSL 123
D V+G +V+ +A + VD+ +A L + A GG R + F G L
Sbjct: 91 GDLVVGRIVEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFSEGDL 150
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-----TGLSRMLLSSPTCPV 178
+ V + + L ++ ++G L++G S G+ R + T
Sbjct: 151 VVAEVQQLHQDGAASLHT-----RSLKYGKLRNGVFASVSGTGGGAGVVRAKRQAWTMEP 205
Query: 179 LEELGKQLSFEIAVGLNGRVWVN 201
+E G ++ +G+NG +W++
Sbjct: 206 VEGAGAAHKMDVLLGVNGYIWIS 228
>gi|352682027|ref|YP_004892551.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
gi|350274826|emb|CCC81472.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
Length = 236
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+I+ PGD+V + L G + SV +++ + NK + + Y P
Sbjct: 8 QIIFPGDLVASEDENVEGAVYLDNG-KYRASSVGLVEF------RENKIVIVPLEGVYRP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRR-NIPKFEIGSLLYV-RVVK 130
D V+G + D A + VDIR P A+LP+ E T+ ++ + + SLL + VV
Sbjct: 61 KQGDIVIGYITDVLASGWEVDIRAPFPAWLPL--NEAVTKYIDLERIALTSLLNIGDVVI 118
Query: 131 A---NPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRML-LSSPTCPVLEELGKQ 185
A + + E T + G ++ G++ E S + R++ + ELG +
Sbjct: 119 AQVKDIDLTDEYPVTLTLREGERLGKIESGFIAEISPVKVPRVIGKKGSMLATISELGCE 178
Query: 186 LSFEIAVGLNGRVW 199
L+ +G NGR+W
Sbjct: 179 LT----IGQNGRIW 188
>gi|167043478|gb|ABZ08175.1| putative KH domain protein [uncultured marine microorganism
HF4000_APKG2H5]
Length = 223
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 5 PSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVE 64
P + ++V PG+ DL G G+ + K G++ + N +E
Sbjct: 10 PRSQGRASRLVAPGE---DLGESEGHAA--GHGVLVMDGRLRATKQGRV-MTNENTVSIE 63
Query: 65 SSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV------LAFEGGTRRNIPKF 118
+ Y P D V+G V C + +F+DI P A LP+ AF GGTR
Sbjct: 64 PLRTAYTPRPSDLVIGFVEGCTNNIWFIDIGAPFNAILPMSLGPGKAAF-GGTR---SLM 119
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPV 178
+IG + RV + + L+ K ++ G + E L L
Sbjct: 120 DIGEAVICRVQEVEETHSSVLTM-----KGMGLRKIRSGTIEEIDPHLLGR-LKGKAGRS 173
Query: 179 LEELGKQLSFEIAVGLNGRVWVNAE 203
L +L + I V NGR+W++ E
Sbjct: 174 LRQLKEDTDCRIIVADNGRLWIDGE 198
>gi|405117451|gb|AFR92226.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
grubii H99]
Length = 331
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 28/201 (13%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
IV PG+V+ + + + ++ G +E + V+ + R +K V + RY P
Sbjct: 50 IVSPGEVI----TSSKEYMRGHGTYVEESNVVASVAGTIERVNK--LISVRPLRSRYTPE 103
Query: 74 VEDTVLGIVVDCKADNFFVDIRG--PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
V D V+G +VD A + VD G + L + GG +R K E +L +
Sbjct: 104 VGDLVIGRIVDVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRR--KIESDALKMREFLAE 161
Query: 132 NPGMNPELSCTDASG------KAAEFGLLKDGYMFETSTGLSRMLLSS-----PTCPVLE 180
+ E+ G ++ ++G L++G++ L R L S P C
Sbjct: 162 GDLLVAEVQAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPC---- 217
Query: 181 ELGKQLSFEIAVGLNGRVWVN 201
++ +GLNG VWV+
Sbjct: 218 ---GPTGVDVILGLNGYVWVS 235
>gi|119493346|ref|XP_001263863.1| exosome complex exonuclease Rrp4, putative [Neosartorya fischeri
NRRL 181]
gi|119412023|gb|EAW21966.1| exosome complex exonuclease Rrp4, putative [Neosartorya fischeri
NRRL 181]
Length = 390
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PG+VV D + G G S S+I K NK V+ + RY+P
Sbjct: 59 IVTPGEVVTD-----DPQWMRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLRARYIP 113
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ D V+G +V+ ++ + VDI P +A LP+ A
Sbjct: 114 EIGDLVVGRIVEVQSRRWKVDIAAPLLAQLPLSAI 148
>gi|159128032|gb|EDP53147.1| exosome complex exonuclease Rrp4, putative [Aspergillus fumigatus
A1163]
Length = 390
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PG+VV D + G G S S+I K NK V+ + RY+P
Sbjct: 59 IVTPGEVVTD-----DPQWMRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLRARYIP 113
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ D V+G +V+ ++ + VDI P +A LP+ A
Sbjct: 114 EIGDLVVGRIVEVQSRRWKVDIAAPLLAQLPLSAI 148
>gi|121704686|ref|XP_001270606.1| exosome complex exonuclease Rrp4, putative [Aspergillus clavatus
NRRL 1]
gi|119398752|gb|EAW09180.1| exosome complex exonuclease Rrp4, putative [Aspergillus clavatus
NRRL 1]
Length = 387
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PGDVV D + G G S S+I K NK V+ + RY P
Sbjct: 59 IVTPGDVVTD-----DPQWMRGHGTYANPLSTSIIATVAGTVQKTNKLLSVQPLRARYTP 113
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 114 EIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 148
>gi|71000673|ref|XP_755018.1| exosome complex exonuclease Rrp4 [Aspergillus fumigatus Af293]
gi|66852655|gb|EAL92980.1| exosome complex exonuclease Rrp4, putative [Aspergillus fumigatus
Af293]
Length = 390
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PG+VV D + G G S S+I K NK V+ + RY+P
Sbjct: 59 IVTPGEVVTD-----DPQWMRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLRARYIP 113
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ D V+G +V+ ++ + VDI P +A LP+ A
Sbjct: 114 EIGDLVVGRIVEVQSRRWKVDIAAPLLAQLPLSAI 148
>gi|15678711|ref|NP_275827.1| exosome complex RNA-binding protein Rrp4 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336574|sp|O26780.1|ECR1_METTH RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2621769|gb|AAB85189.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 311
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLY 125
Q +Y+P D V+G + D + + +DI P LP G +R + F+I +L
Sbjct: 55 QSKYIPKRGDVVIGEITDIRFSMWGLDINSPYTGLLPASEVFGKDKRELESVFDIVDVLL 114
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYM-FETSTGLSRMLLSSPTCPVLEELGK 184
+RVV + +L K G +DG + + T T + R++ ++ + +
Sbjct: 115 LRVVDVDEVKKVKLGL-----KGRGLGKFRDGILVYITPTKVPRLI--GKRGSMINMVKE 167
Query: 185 QLSFEIAVGLNGRVWVNAE 203
+ +I VG NG VW+ E
Sbjct: 168 KTHCDIVVGQNGVVWIKGE 186
>gi|242814286|ref|XP_002486340.1| exosome complex exonuclease Rrp4, putative [Talaromyces stipitatus
ATCC 10500]
gi|218714679|gb|EED14102.1| exosome complex exonuclease Rrp4, putative [Talaromyces stipitatus
ATCC 10500]
Length = 386
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IVVPG+ V + + G G S S+I SK NK V + RY+P
Sbjct: 51 IVVPGETVTN-----DPQWMRGHGTFTTPLSTSIIATVAGTVSKTNKLLSVHPLRARYMP 105
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGT-RRNIPKFEI--------G 121
+ D V+G +V+ +A + VDI P +A LP+ A GG RR E+ G
Sbjct: 106 EIGDLVVGRIVEVQARRWKVDIAAPLLAQLPLSAINLPGGILRRRTSADELQMRNFFVEG 165
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDG-YMFETSTGLS 167
L+ V + + L ++ +G L++G +M T TG S
Sbjct: 166 DLVVAEVQSVHQDGSATLHT-----RSLSYGKLRNGVFMAVTGTGGS 207
>gi|407921327|gb|EKG14478.1| hypothetical protein MPH_08327 [Macrophomina phaseolina MS6]
Length = 350
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 27/205 (13%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PG+ V D + G G DS +I K NK + + RY+P
Sbjct: 52 IVTPGETVTD-----DPQWMRGHGTYVPDDSTEIISTVAGTVLKTNKLLSITPLRARYIP 106
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRR--------NIPK-FEIG 121
+ D V+G +V+ ++ + VDI P +A LP+ A GG R NI F G
Sbjct: 107 EIGDLVVGRIVEVQSRRWRVDISAPQLAGLPLSAINLPGGILRKRTAVDELNIRTFFTEG 166
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEE 181
LL V + L ++ ++G L++GY + +
Sbjct: 167 DLLVAEVQTIHGDGAASLHT-----RSLKYGKLRNGYFLSVAGTGGGGGRQGGVARSRRQ 221
Query: 182 L-----GKQLSFEIAVGLNGRVWVN 201
+ + +I +G+NG +W++
Sbjct: 222 VFTLSSTRGGEIDIILGVNGYIWIS 246
>gi|429216661|ref|YP_007174651.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
gi|429133190|gb|AFZ70202.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
Length = 230
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN------IPKFEIGSL 123
Y+P D V+G+V N+FVDI P A L V F G + + ++G
Sbjct: 56 YIPKEGDIVIGLVTSHGVANWFVDINSPYQAILSVQDFFGTKQSSQFPEDPFKYLQVGEY 115
Query: 124 LYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+ ++ + NP L+ D GK AE G++ + T + R++ ++E L
Sbjct: 116 IKAKIAAFDRIRNPLLTVQDKGLGKIAE-GIVVSVH----PTRVPRII--GKKGSMIEML 168
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ E V +NG + + ++ + SNAI ++ + + L +R+K
Sbjct: 169 KNETGCEFFVAVNGMINIKCQNEQLESIASNAI------KIIETQAHISGLTERVK 218
>gi|425778640|gb|EKV16758.1| Exosome complex exonuclease Rrp4, putative [Penicillium digitatum
PHI26]
gi|425784154|gb|EKV21947.1| Exosome complex exonuclease Rrp4, putative [Penicillium digitatum
Pd1]
Length = 392
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 8 ANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESS 66
+NL IV PG+VV D + G G S S+I K NK V
Sbjct: 50 SNLGTGIVTPGEVVTD-----DPQWMRGHGTYMNPLSTSIIATVAGTVQKTNKLLSVHPL 104
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 105 RARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 145
>gi|124505351|ref|XP_001351417.1| exosome complex exonuclease rrp4, putative [Plasmodium falciparum
3D7]
gi|6562740|emb|CAB62879.1| exosome complex exonuclease rrp4, putative [Plasmodium falciparum
3D7]
Length = 338
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
K+V+PG+ VLD + ++ +K GGGL +E D G++ + Y VE + +Y
Sbjct: 50 KLVLPGECVLDKND-KDRFLK-GGGLYEEDDMFYACILGRVNYINKLIY-VEPLKGKYTG 106
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
V D ++G + D D + V+I A+L + ++ NI F LY V+
Sbjct: 107 SVGDLLVGKIKDISNDKWIVEIGSYCRAYLSI------SQTNISIFSQRIRLYNDVINMI 160
Query: 133 PGMNPE--LSC------TDAS----GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLE 180
P+ ++C TD + +++ +G L +G +L+ P +
Sbjct: 161 HIYKPDDIIACEIQRISTDGTIILHTRSSIYGKLSNG-----------VLIIVPQTLIHN 209
Query: 181 ELGKQLSF----EIAVGLNGRVWVNA 202
+ F +I +G+NG +W+++
Sbjct: 210 QKKHIFVFPCNVQIILGMNGYIWISS 235
>gi|321252681|ref|XP_003192490.1| exosome complex exonuclease rrp4 [Cryptococcus gattii WM276]
gi|317458958|gb|ADV20703.1| Exosome complex exonuclease rrp4, putative [Cryptococcus gattii
WM276]
Length = 331
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
IV PG+V+ + + + ++ G +E + VS + R +K V RY P
Sbjct: 50 IVSPGEVI----TSSKEYMRGHGTYVEESNVVSSVAGTIERVNK--LISVRPLHSRYTPE 103
Query: 74 VEDTVLGIVVDCKADNFFVDIRG--PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
V D V+G +V+ A + VD G + L + GG +R K E +L +
Sbjct: 104 VGDLVIGRIVEVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRR--KIESDALKMREFLAE 161
Query: 132 NPGMNPELSCTDASG------KAAEFGLLKDGYMFETSTGLSRMLLSS-----PTCPVLE 180
+ E+ G ++ ++G L++G++ L R L S P C
Sbjct: 162 GDLLVAEVQAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHVPPPC---- 217
Query: 181 ELGKQLSFEIAVGLNGRVWVN 201
++ +GLNG VWV+
Sbjct: 218 ---GPTGVDVILGLNGYVWVS 235
>gi|406868726|gb|EKD21763.1| exosome complex exonuclease RRP4 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 573
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 24/215 (11%)
Query: 3 AKPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW 62
AK + + +V PG V D + G G S +I K NK
Sbjct: 274 AKRARHSSAKDLVTPGQTVTD-----DPQWMRGHGTYVASSSTEIIATVAGTIQKTNKLL 328
Query: 63 -VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK-- 117
V + RY P + D V+G +V+ +A + VD+ P +A LP+ A GG R
Sbjct: 329 SVRPLRARYTPEIGDLVVGRIVEVQAKRWRVDVGAPVLAGLPLSAINLPGGILRKRTDTD 388
Query: 118 -------FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRML 170
F G LL V + + L ++ ++G L++G S
Sbjct: 389 ELQIRTFFSEGDLLIAEVQSLHQDGSASLHT-----RSLKYGKLRNGVFMSVSGVGGGGG 443
Query: 171 LSSPTCPV--LEELGKQLSFEIAVGLNGRVWVNAE 203
+ V ++ + +I +G+NG +W++
Sbjct: 444 VVRSRRQVWTIDTVSGGGQVDIVLGVNGYIWISKH 478
>gi|308804591|ref|XP_003079608.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
gi|116058063|emb|CAL54266.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
Length = 261
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEI 120
V + + RYVP D VLG V + + +DI R + L + G +R + ++
Sbjct: 8 VRALKSRYVPETGDVVLGKVTNVSGKRWILDINARQNGVLQLSAVHLPGNVQRR--RNDV 65
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAA------EFGLLKDGYMFETSTGLSRMLLSSP 174
L + ++ E+ + G AA ++G LK G + + L R L
Sbjct: 66 DELNMRTLYAEGDIVSSEVQSVYSDGAAALHTRSLKYGRLKRGQLVRVTANLVRRLPQHF 125
Query: 175 TCPVLEELGKQLS-----FEIAVGLNGRVWVNAESPST 207
++E ++ EI +G NG +WV A S +T
Sbjct: 126 HRLEMDEFHDSVATGTHDVEILLGCNGYIWVGAPSAAT 163
>gi|58258185|ref|XP_566505.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106127|ref|XP_778074.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260777|gb|EAL23427.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222642|gb|AAW40686.1| exosome complex exonuclease rrp4, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 331
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 28/201 (13%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
IV PG+V+ + + + ++ G +E + VS + R +K V + RY P
Sbjct: 50 IVSPGEVI----TSSKEYMRGHGTYVEESNVVSSVAGTIERVNK--LISVRPLRSRYTPE 103
Query: 74 VEDTVLGIVVDCKADNFFVDIRG--PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131
V D V+G +V+ A + VD G + L + GG +R K E +L +
Sbjct: 104 VGDLVIGRIVEVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRR--KIESDALKMREFLAE 161
Query: 132 NPGMNPELSCTDASG------KAAEFGLLKDGYMFETSTGLSRMLLSS-----PTCPVLE 180
+ E+ G ++ ++G L++G++ L R L S P C
Sbjct: 162 GDLLVAEVQAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPC---- 217
Query: 181 ELGKQLSFEIAVGLNGRVWVN 201
++ +GLNG VWV+
Sbjct: 218 ---GPTGVDVILGLNGYVWVS 235
>gi|20090628|ref|NP_616703.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina
acetivorans C2A]
gi|29336814|sp|Q8TPX7.1|ECR1_METAC RecName: Full=Probable exosome complex RNA-binding protein 1
gi|19915671|gb|AAM05183.1| RNA-binding protein [Methanosarcina acetivorans C2A]
Length = 260
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD+ ++ K G G + D + G + K +K V Y+P
Sbjct: 4 KIVIPGDL------LSENQKKAGYGTYVKNDKIYSSLCG-IENLKEDKVGVIPLAGAYIP 56
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR-RNIPK-FEIGSLLYVRVVK 130
D V+GIV+ N+ DI P L V + R +P+ +G + +RV
Sbjct: 57 SANDVVIGIVIVVTPSNWIFDIAAPYDGLLHVSEYPRRVESREMPEILNVGDSVILRVKD 116
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEELGKQLSFE 189
+ M EL+ D S LK G + + S + R++ + ++ L K+ +
Sbjct: 117 VDSSMKVELALRDPS-----LHKLKTGQIIKVESVKVPRVIGHGGS--MISMLKKETNCS 169
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
I VG NGR+W++ + + L+S A+ E L A Q+ + D++ +K
Sbjct: 170 IFVGQNGRIWIDGKD-EDIELLSKALRKIE-LEA-QRSGLTDRIYNFLK 215
>gi|52550029|gb|AAU83878.1| conserved hypothetical protein [uncultured archaeon GZfos34H10]
Length = 223
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 25/224 (11%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
K+VVPGD + + + + GGG E +V +K G + K V + +Y+P
Sbjct: 3 KVVVPGDFI------STEVNRAGGGTYVEDGNVYALKYGVVDDRGTIK--VVALSGKYMP 54
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK----FEIGSLLYVRV 128
D V+G +V+ + VDI P A L F G + +I L+ +V
Sbjct: 55 VNGDVVIGKIVEISFPYWIVDIASPYEARLRKSEFGRGENIDFGNMCEYLDIDDLIVAKV 114
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLS 187
+ + M +L+ + EF + G + E S T + R++ S + ++ L + +
Sbjct: 115 MNVDVMMRIDLALKN------EFKMDGVGRLIEVSPTKVPRIIGRSGS--MIRLLKDKCN 166
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIM---NSESLSAVQQKI 228
I V NGR+W+ S + + + S +M N S + +I
Sbjct: 167 CFIFVAKNGRIWIKG-SSADMDIASQTVMKIANEAHTSGLTDRI 209
>gi|402575929|gb|EJW69889.1| hypothetical protein WUBG_19201 [Wuchereria bancrofti]
Length = 65
Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG 109
+RY+P D V+GIV + F +DI IAF+ L+FEG
Sbjct: 6 RRYIPQKGDRVIGIVTSTHGETFKIDIGSADIAFISFLSFEG 47
>gi|386876615|ref|ZP_10118714.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386805577|gb|EIJ65097.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 226
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 19/176 (10%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSL 123
+Y+P + D V+G V+ + ++ +DI + FLP F K + G L
Sbjct: 55 KYIPKINDLVIGKVISHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELATKLKSGDL 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEEL 182
+ R+ + +P ++ +D + G + G + + S + + R++ T + E+
Sbjct: 115 VAARIANFDRTRDPLVTISD-----RDLGKIDSGDLIKISPSKVPRLIGKRGTMIQMIEM 169
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ I +G NG V V+ ESP ++ AI V +K V L ++K
Sbjct: 170 ATDAA--ITIGQNGWVVVSCESPEGLLKAKKAI------EMVNEKAHVANLTDQVK 217
>gi|255945133|ref|XP_002563334.1| Pc20g08110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588069|emb|CAP86140.1| Pc20g08110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 391
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 8 ANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESS 66
+N+ IV PG+VV D + G G S S+I K NK V
Sbjct: 49 SNIGAGIVTPGEVVTD-----DPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVHPL 103
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 104 RARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 144
>gi|91772266|ref|YP_564958.1| exosome complex RNA-binding protein Rrp4 [Methanococcoides burtonii
DSM 6242]
gi|121684520|sp|Q12ZB8.1|ECR1_METBU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|91711281|gb|ABE51208.1| Archaeal exosome complex RNA-binding protein 4 [Methanococcoides
burtonii DSM 6242]
Length = 263
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN-IPKF-EIGSLLYV 126
+Y+P +D ++ V+D N+ ++ P L V F + + KF ++G + V
Sbjct: 52 KYIPSRKDFIIVNVIDVTPSNWIMETGSPYDGLLHVSEFPKRVDSSEMRKFMDVGDCVIV 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEELGKQ 185
RV + M ELS + +A L G + E + + R++ + + L K+
Sbjct: 112 RVKDVSKAMKVELSMREQGSRA-----LSKGRIIEVVPSKVPRVIGHGGSMVSI--LKKE 164
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSN-AIMNSES-LSAVQQKI 228
+ ++ VG NGR+W+N + L + ++ SES +S + K+
Sbjct: 165 SNCDVFVGKNGRIWINGKDKDMDRLTTAIEMIESESHMSGLTDKV 209
>gi|407461956|ref|YP_006773273.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045578|gb|AFS80331.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
Length = 226
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSL 123
+Y+P + D V+G V + ++ +DI + FLP F K + G L
Sbjct: 55 KYIPKINDLVIGKVNSHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELATKLKTGDL 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+ R+ + +P +S +D + G + G + E S L+ +++ +
Sbjct: 115 VAARIANFDRTRDPLVSISD-----RDLGKIDSGDLVEISPSKVPRLIGKKGS-MIQMIE 168
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV-----QQKIMVDK 232
+ I +G NG V V+ ESP ++ AI + V Q K M+DK
Sbjct: 169 EATDAAITIGQNGWVVVSCESPEGLLKAKKAIQMVNEQAHVANLTDQVKEMLDK 222
>gi|67586458|ref|XP_665191.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54655708|gb|EAL34961.1| hypothetical protein Chro.30107 [Cryptosporidium hominis]
Length = 174
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 38/148 (25%)
Query: 105 LAFEGGTRRNIPKFEIGSLL--------------------------------YVRVVK-- 130
+AFEG T+RN P G+ + Y+ V+K
Sbjct: 1 MAFEGATKRNKPNLVPGNYVCSRINYVDLESGEIELTCITPEEKKTWSNNENYLGVLKNS 60
Query: 131 --ANPGMNPELSCTDASGKAAEF-GLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
N + + S +D S E +KDG ++++LL+ + VLE L K +
Sbjct: 61 NYKNTNIIEDYSKSDRSSLPGESQSCIKDGMTVTVPQSVAQILLADQSY-VLEALSKYFA 119
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAI 215
+EI VG NG +W +A + ++L+ +A+
Sbjct: 120 YEICVGQNGIIWFSASNIKEMLLIMSAL 147
>gi|161527939|ref|YP_001581765.1| exosome complex RNA-binding protein Rrp4 [Nitrosopumilus maritimus
SCM1]
gi|380876880|sp|A9A5C8.1|ECR1_NITMS RecName: Full=Probable exosome complex RNA-binding protein 1
gi|160339240|gb|ABX12327.1| KH type 1 domain protein [Nitrosopumilus maritimus SCM1]
Length = 226
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSL 123
+Y+P + D V+G V + ++ +DI + FLP F K G L
Sbjct: 55 KYIPKINDLVIGKVNSHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELATKLRTGDL 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+ R+ + +P +S +D + G + G + E S L+ +++ +
Sbjct: 115 VAARIANFDRTRDPLVSISD-----RDLGKIDSGVLMEISPSKVPRLIGKKGS-MIQMIE 168
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV-----QQKIMVDK 232
+ + +G NG V V+ ESP ++ AI + V Q K M+DK
Sbjct: 169 EATDAAVTIGQNGWVVVSCESPEGLLKAKKAIQMVNEQAHVANLTDQVKEMLDK 222
>gi|440634112|gb|ELR04031.1| hypothetical protein GMDG_06542 [Geomyces destructans 20631-21]
Length = 344
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PG+VV D + G G E + +++ K NK V + RY P
Sbjct: 51 IVTPGEVVTD-----DPQWMRGHGTYVEPATSAILATVAGTIQKTNKLLSVRPLRARYTP 105
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ D V+G ++D ++ + VDI P +A LP+ A
Sbjct: 106 EIGDLVVGRIIDVQSRRWRVDIGAPLLAALPLSAI 140
>gi|392577741|gb|EIW70870.1| hypothetical protein TREMEDRAFT_28582 [Tremella mesenterica DSM
1558]
Length = 300
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 32/216 (14%)
Query: 2 EAKPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKY 61
+ + S+ L +++V PG+ + +++ G G E D V AG + + NK
Sbjct: 9 QGEGSSTGLTNRVVAPGEAI-----ASSKEYMRGHGTYVEDDQVVSSIAGTI--ERVNKL 61
Query: 62 -WVESSQKRYVPCVEDTVLGIVVDCKADNFFVD--IRGPTIAFLPVLAFEGGTRRNIPKF 118
V + + RY P V D V+G +V+ + + VD R I L + GG +R K
Sbjct: 62 VSVRALKSRYTPEVGDLVVGRIVEVGSLRWKVDAHARQDAILMLSSVNLPGGVQRR--KI 119
Query: 119 EIGSLLYVRVVKANPGMNPELSCTDASG------KAAEFGLLKDGYMFETSTGLSRMLLS 172
E +L + + E+ G ++ +G L++G + L R L S
Sbjct: 120 ESDALKMREFLAEGDLLVAEVQAFFQDGAMSLHTRSLRYGKLRNGLLLSVQPRLIRRLKS 179
Query: 173 S------PTCPVLEELGKQLSFEIAVGLNGRVWVNA 202
P P ++ +GLNG +WV A
Sbjct: 180 HFHHLPPPLGPS--------GVDVILGLNGYIWVAA 207
>gi|302348937|ref|YP_003816575.1| exosome complex RNA-binding protein 1 [Acidilobus saccharovorans
345-15]
gi|302329349|gb|ADL19544.1| Probable exosome complex RNA-binding protein 1 [Acidilobus
saccharovorans 345-15]
Length = 234
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 38/172 (22%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF----EGGTRRNIP--KFEIGSL 123
Y P D V+G+V A N+F+DI P A L + F +GG + P +IG
Sbjct: 60 YFPNEGDIVIGLVTSHAAANWFLDINSPYQATLSIQDFFGVKQGGQVPDDPFTYLKIGDY 119
Query: 124 LYVRVVKANPGMNPELSCTDAS-GKAAEFGLL------------KDGYMFETSTGLSRML 170
+ R+V + +P L+ D G+ E ++ K G M ET +
Sbjct: 120 VKARIVAFDRVRSPALTVQDKGLGRITEGTVVTVRPVKVPRIIGKKGSMIET-------I 172
Query: 171 LSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLS 222
S+ C V V +NGRV + ++ +V+ AI E+ S
Sbjct: 173 KSASGCDVF------------VAVNGRVHITCQNEILQEIVAEAIKMIETQS 212
>gi|239988070|ref|ZP_04708734.1| putative ABC transporter solute-binding protein [Streptomyces
roseosporus NRRL 11379]
gi|291445049|ref|ZP_06584439.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 15998]
gi|291347996|gb|EFE74900.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 15998]
Length = 321
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 114 NIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSS 173
NI K + G ++Y +V ++N + E+ TD KA + LL+D F + S ++ +
Sbjct: 208 NIQKMDAG-IIYTQVSESNSCLLGEVYTTDGRIKAMDLDLLEDDKHFFPNYNASPVVHEA 266
Query: 174 --PTCPVLEEL----GKQLSFEIAVGLNGRVWVNAESPSTVV 209
PV+ EL ++L+ E+A LN +V V+ E P V
Sbjct: 267 TFEKYPVIAELLDPLARKLTTEVAQTLNAKVDVDGEDPHEVA 308
>gi|424819694|ref|ZP_18244761.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422490|gb|EGD71887.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 224
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 10/172 (5%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV--LAFEGGTRRNIPKFEIGSLLYVR 127
Y P D ++G V + + + VDI P L V + F EIG L+Y R
Sbjct: 57 YYPSEGDDIIGEVTEIASKYWVVDINAPFYTRLDVRDVNFRAELGELDRYIEIGDLIYAR 116
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQL 186
V + P + D S + +G L+ + L R++ ++ + Q
Sbjct: 117 VFRIYPN-----NAADISMRGTRYGKLEPKLTMKIDPVKLPRLI--GKEGSMINMIKDQT 169
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+I VG NG +W++ + + + E+ V +LL+ ++
Sbjct: 170 KCDILVGQNGIIWIDGDEAGRLAAATAIKFIDENYVETDLTEKVGRLLENVR 221
>gi|401888810|gb|EJT52759.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 2479]
gi|406697467|gb|EKD00726.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 8904]
Length = 277
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 28 TNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVPCVEDTVLGIVVDCK 86
T + G G E D+++ AG L + NK V RYVP V D V+G +V+
Sbjct: 11 TGKLTNRGHGTYVENDTITSSVAGTL--ERVNKLISVRPLSTRYVPEVGDLVIGRIVEVA 68
Query: 87 ADNFFVD--IRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDA 144
+ V+ R + L + GG +R K E SL + + E+ +
Sbjct: 69 GQRWKVEANARQDAVLMLSSVNLPGGVQRR--KVESDSLKMREFLAEGDLLVAEVQAFFS 126
Query: 145 SG------KAAEFGLLKDGYMFETSTGLSRML------LSSPTCPVLEELGKQLSFEIAV 192
G ++ ++G L++G + S L R L L +P P ++ +
Sbjct: 127 DGAMSLHTRSLKYGKLRNGMLLSLSPRLIRRLKSHFVHLPAPCGP--------HGVDVIL 178
Query: 193 GLNGRVWVN 201
GLNG VWV+
Sbjct: 179 GLNGYVWVS 187
>gi|212544972|ref|XP_002152640.1| exosome complex exonuclease Rrp4, putative [Talaromyces marneffei
ATCC 18224]
gi|210065609|gb|EEA19703.1| exosome complex exonuclease Rrp4, putative [Talaromyces marneffei
ATCC 18224]
Length = 380
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 44 SVSVIKAGKLRFSKPNKYW-VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFL 102
S S+I SK NK V + RY+P + D V+G +V+ +A + VDI P +A L
Sbjct: 78 STSIIATVAGTVSKTNKLLSVHPLRARYMPEIGDLVVGRIVEVQARRWKVDIAAPLLAQL 137
Query: 103 PVLAFE--GGT-RRNIPKFEI--------GSLLYVRVVKANPGMNPELSCTDASGKAAEF 151
P+ A GG RR E+ G L+ V + + L ++ +
Sbjct: 138 PLSAINLPGGILRRRTSADELQMRNFFVEGDLVVAEVQSVHQDGSATLHT-----RSLSY 192
Query: 152 GLLKDG-YMFETSTGLS 167
G L++G +M T TG S
Sbjct: 193 GKLRNGVFMTVTGTGGS 209
>gi|71021183|ref|XP_760822.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
gi|46100196|gb|EAK85429.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
Length = 470
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE---GGTRRNIPKFE 119
V ++ RY V D V+G + + + VDI T + L + + G RR I E
Sbjct: 203 VRPARSRYAAEVGDLVIGRITEVGPKRWKVDINAKTDSALQLSSINLPGGIQRRKIESDE 262
Query: 120 IGSLLYVR---VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTC 176
+ + + ++ A M + + + ++ +G L++G + S L + L S
Sbjct: 263 LQMRSFFQENDLLVAEVQMMFQDNSSALHTRSLRYGKLRNGILVTVSPNLIQRLKSHFVH 322
Query: 177 PVLEELGKQLSFEIAVGLNGRVWV 200
+EL QL ++ +GLNG +W+
Sbjct: 323 LKHDEL--QLDVDLVIGLNGYIWI 344
>gi|326428887|gb|EGD74457.1| hypothetical protein PTSG_05821 [Salpingoeca sp. ATCC 50818]
Length = 147
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 45 VSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRG 96
+ V+ G LR K N WV+ KR +P D V+GI+ +N+ VDI G
Sbjct: 69 LQVVVPGDLR-RKGNMVWVDGVHKRALPAEGDYVIGIITGTPGENYNVDIGG 119
>gi|367030457|ref|XP_003664512.1| hypothetical protein MYCTH_2307431 [Myceliophthora thermophila ATCC
42464]
gi|347011782|gb|AEO59267.1| hypothetical protein MYCTH_2307431 [Myceliophthora thermophila ATCC
42464]
Length = 367
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 27/246 (10%)
Query: 5 PSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-V 63
P+ +L +V PG+V+ + + G G + +++ + ++ NK V
Sbjct: 64 PARRDLASAVVTPGEVITE-----DPQWMRGHGTYVAPHTTAIVSSVAGTVTRTNKLLSV 118
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK---- 117
+ RY P V D V+G +V+ +A + VD+ +A LP+ A GG R +
Sbjct: 119 RPLRARYTPEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDEL 178
Query: 118 -----FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLS 172
F G LL V + L ++ ++G L++G S +
Sbjct: 179 QIRTFFAEGDLLVAEVQQLFGDGGAVLHT-----RSLKYGKLRNGVFVAVSGMGGGGGVV 233
Query: 173 SPTCPV--LEELGKQLSFEIAVGLNGRVWV--NAESPSTVVLVSNAIMN-SESLSAVQQK 227
V ++ ++ +G+NG VW+ + E+P + I N ES+SA
Sbjct: 234 RSRRQVWTMDAANGGGQIDVVLGVNGYVWISKHVETPEAEAGKATGITNMEESVSATVYS 293
Query: 228 IMVDKL 233
D++
Sbjct: 294 SQNDRI 299
>gi|67525937|ref|XP_661030.1| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4]
gi|40743715|gb|EAA62903.1| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4]
Length = 753
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 14 IVVPGDVVLD---LSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKR 69
I+ PG+VV + +T+ G G S S+I K NK V+ + R
Sbjct: 422 IITPGEVVTNDPQWMRLTSSLSSRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRAR 481
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRR 113
Y P + D V+G +V+ ++ + VD+ P +A LP+ A GG R
Sbjct: 482 YTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILR 527
>gi|115402927|ref|XP_001217540.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189386|gb|EAU31086.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 383
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
I+ PG+VV D + G G S S+I K NK V+ + RY P
Sbjct: 56 IITPGEVVTD-----DPQWMRGHGTYMNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTP 110
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
+ D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 111 EIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 145
>gi|259485587|tpe|CBF82734.1| TPA: exosome complex exonuclease Rrp4, putative (AFU_orthologue;
AFUA_3G05860) [Aspergillus nidulans FGSC A4]
Length = 390
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 14 IVVPGDVVLD---LSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKR 69
I+ PG+VV + +T+ G G S S+I K NK V+ + R
Sbjct: 59 IITPGEVVTNDPQWMRLTSSLSSRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRAR 118
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
Y P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 119 YTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 156
>gi|367041025|ref|XP_003650893.1| hypothetical protein THITE_2042530 [Thielavia terrestris NRRL 8126]
gi|346998154|gb|AEO64557.1| hypothetical protein THITE_2042530 [Thielavia terrestris NRRL 8126]
Length = 353
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 26/219 (11%)
Query: 3 AKPSTANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW 62
A+ +T+ IV PG+++ D + G G + +++ + S+ NK
Sbjct: 49 ARLATSLATSDIVTPGELITD-----DPQWMRGHGTYATPGTATIVSSVAGTISRTNKLL 103
Query: 63 -VESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK-- 117
V + RY P V D V+G +V+ +A + VD+ +A LP+ A GG R +
Sbjct: 104 SVRPLRARYTPEVGDLVVGRIVEVQARRWRVDVGSTQLAALPLSAINLPGGILRKRTETD 163
Query: 118 -------FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRML 170
F G LL V + L ++ ++G L++G S
Sbjct: 164 ELQIRTFFAEGDLLVAEVQQLFADGGAVLHT-----RSLKYGKLRNGVFVAVSGMGGGGG 218
Query: 171 LSSPTCPV--LEELGKQLSFEIAVGLNGRVWV--NAESP 205
+ V +E ++ +G+NG VW+ + E+P
Sbjct: 219 VVRSRRQVWTMEAANGGGQIDVVLGVNGYVWISKHVETP 257
>gi|388580789|gb|EIM21101.1| hypothetical protein WALSEDRAFT_19193 [Wallemia sebi CBS 633.66]
Length = 302
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIA--FLPVLAFEGGTRRNIPKFEIGSLL 124
+ +Y+P V D V+G +V+ +A + V+I + A L + GG +R K E L
Sbjct: 65 KHKYLPQVGDLVIGRIVEVQAKRWKVNINAASDAVLMLSSINLPGGVQRR--KLESDELQ 122
Query: 125 YVRVVKANPGMNPELSCTDASG------KAAEFGLLKDGYMFETSTGLSRMLLSS-PTCP 177
E+ G ++ ++G L++G + L R L S T P
Sbjct: 123 MRNFFTEGDLCVAEVQSFFHDGSVSLHTRSLKYGKLRNGTLATVQPNLMRRLKSHFYTLP 182
Query: 178 VLEELGKQLSFEIAVGLNGRVWV 200
V + ++ +GLNGR+WV
Sbjct: 183 V--------NVDLIIGLNGRIWV 197
>gi|396493578|ref|XP_003844087.1| hypothetical protein LEMA_P017380.1 [Leptosphaeria maculans JN3]
gi|312220667|emb|CBY00608.1| hypothetical protein LEMA_P017380.1 [Leptosphaeria maculans JN3]
Length = 341
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 23/164 (14%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRYVP 72
IV PG+ + ++ G G DS ++I K NK V+ + RY P
Sbjct: 41 IVTPGEHI-----TSDPQWMRGHGTYVPPDSSTIISTVAGHLHKTNKLLSVQPLRARYQP 95
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV--LAFEGGTRR--------NIPK-FEIG 121
+ D V+G +V + + VDI P +A LP+ + GG R NI F G
Sbjct: 96 EIGDLVIGRIVSVQTKKWSVDIAAPMLANLPLSSINLPGGILRRRTAVDELNIRTFFSEG 155
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTG 165
LL V + L ++ ++G L++G +F + TG
Sbjct: 156 DLLVAEVQSLHQDNTASLHT-----RSLKYGKLRNG-LFTSLTG 193
>gi|329766297|ref|ZP_08257844.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393796025|ref|ZP_10379389.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137199|gb|EGG41488.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 226
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 19/176 (10%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSL 123
+Y+P ++D V+G V+ + ++ +DI + FLP F K + G L
Sbjct: 55 KYIPKIDDLVIGKVISHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELTSKLKSGDL 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEEL 182
+ R+ + +P ++ D + G + G + + S + + R++ T + E+
Sbjct: 115 VAARIANFDRTRDPLVTIAD-----RDLGKIDSGTLVKISPSKVPRLIGKRGTMIQMIEM 169
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ + +G NG + V+ E+P ++ AI V +K V L ++K
Sbjct: 170 ATGAA--VTIGQNGWIVVSCETPEGLLKAKKAI------QMVDEKAHVANLTDQVK 217
>gi|52549120|gb|AAU82969.1| exosome complex RNA-binding protein 1 [uncultured archaeon
GZfos24D9]
Length = 223
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 27/217 (12%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
K+VVPGD + + + + G G E +V +K G L K V + +Y+P
Sbjct: 3 KVVVPGDFI------STEVNRAGEGTYVEDGNVYALKYGVLDDRGTIK--VVALSGKYMP 54
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK----FEIGSLLYVRV 128
D V+G + + + VDI P A L F G + + +I L+ +V
Sbjct: 55 VNGDVVVGKIAEISFPFWIVDIAAPYEARLHKSEFGRGEKIDFGNMCEYLDIDDLIVAKV 114
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLS 187
+ + M +L+ + EF + G + E S T + R++ S + ++ L + +
Sbjct: 115 MNVDVMMRIDLALKN------EFKMDGVGRLIEVSPTKVPRIIGRSGS--MIRLLKDKCN 166
Query: 188 FEIAVGLNGRVWVNAESPS------TVVLVSNAIMNS 218
I V NGR+W+ S TV+ ++N S
Sbjct: 167 CFIFVAKNGRIWIKGSSADMDIASQTVMKIANEAHTS 203
>gi|294897174|ref|XP_002775860.1| exosome complex exonuclease rrp4, putative [Perkinsus marinus ATCC
50983]
gi|239882213|gb|EER07676.1| exosome complex exonuclease rrp4, putative [Perkinsus marinus ATCC
50983]
Length = 332
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGP-TIAFLPVLAF---EGGTRRNIPK 117
++ + RY V D ++G V + D + +D G ++A LP+ +G RR
Sbjct: 81 YIRPLKSRYTGEVGDVIVGRVAEVGGDRWMLDYGGGGSLAALPIGGVNLPQGEQRRRTDT 140
Query: 118 --------FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRM 169
F G LL + K + T ++A++G L +G M S+ L R
Sbjct: 141 DRMNMRAMFTEGDLLSAEIQKVVSDSGDVILHT----RSAKYGKLYNGQMVRVSSSLVR- 195
Query: 170 LLSSPTCPVLEELGKQL-SFEIAVGLNGRVWV 200
+ ++E L ++ +GLNG +WV
Sbjct: 196 ---RQSSHIVENLPAPFDHLQVVLGLNGWIWV 224
>gi|145347330|ref|XP_001418126.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578354|gb|ABO96419.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 63 VESSQKRYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFEGGTRRNIPKFEI 120
V + + RY P D VLG V + + +D+ R + L + G +R + ++
Sbjct: 94 VRALKARYAPETGDVVLGRVKEISGKRWILDVNARQNGVLQLSAVHLPGNVQRR--RNDV 151
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAA------EFGLLKDGYMFETSTGLSRMLLSSP 174
L + + ++ E+ A G AA ++G LK+G + + L R L
Sbjct: 152 DELNMRMLYAEDDVVSAEVQSVYADGAAALHTRSLKYGCLKNGQLVRVTANLVRRLPQHF 211
Query: 175 TCPVLEELGKQLS-----FEIAVGLNGRVWVNAESPST 207
++E ++ EI +G NG +WV A S +T
Sbjct: 212 HRLKMDEFHDGVAAEANDVEILLGCNGFIWVGAPSGAT 249
>gi|146302861|ref|YP_001190177.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera sedula DSM
5348]
gi|145701111|gb|ABP94253.1| ribosomal RNA-processing protein RRP4 [Metallosphaera sedula DSM
5348]
Length = 247
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 20/178 (11%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------GTRRNIPKFEIG 121
Y P + DTV+ +V D + + DI+ P A+LP + G RR I ++G
Sbjct: 65 HYYPRIGDTVIALVEDVELYGWTTDIKAPYSAYLPASSLLGRPANVGEDLRRYI---DVG 121
Query: 122 SLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLE 180
+ +V + +P LS K G + G + + + R++ + +LE
Sbjct: 122 DYVIAKVESFDRTSDPVLSV-----KGKGLGRVSSGTVIDILPVKVPRVVGKGKS--MLE 174
Query: 181 ELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + +I V NGRV N S ++ AI E S K + D++ + IK
Sbjct: 175 TLSTETGCDILVAQNGRVLANCPSKEKENVLIMAIRTIERES--HTKGLTDRIKKLIK 230
>gi|119719495|ref|YP_919990.1| exosome complex RNA-binding protein Rrp4 [Thermofilum pendens Hrk
5]
gi|380876882|sp|A1RXQ7.1|ECR1_THEPD RecName: Full=Probable exosome complex RNA-binding protein 1
gi|119524615|gb|ABL77987.1| ribosomal RNA-processing protein RRP4 [Thermofilum pendens Hrk 5]
Length = 237
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG----TRRNIPK-FEIGSL 123
+Y P V+G VVD ++ VDI P +A LPV +R + + ++G L
Sbjct: 66 KYFPVEGHIVVGKVVDIGFTSWEVDINSPYVAVLPVSEVTSRPVTISRNELSRILDVGDL 125
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRML-LSSPTCPVLEE 181
+ ++V + +P L+ K + G + G + E + R++ ++E+
Sbjct: 126 ILAKIVSFDLSKDPVLTI-----KESRLGKIPRGTLVEIPPQKVPRVIGRRGSMVSMIED 180
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
L L ++ VG NGR+ V + P V + A+ E+
Sbjct: 181 L---LGVKLIVGQNGRIVVVGDDPQRVEIAVLAVRKIEA 216
>gi|290559126|gb|EFD92490.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 217
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV--LAFEGGTRRNIPKFEIGSLLYVR 127
Y P D ++G V + + + VDI P L V + F EIG L+Y R
Sbjct: 57 YYPSEGDDIIGEVTEIASKYWVVDINAPFYTRLDVRDVNFRAELGELDRYIEIGDLIYAR 116
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQL 186
V + P + D S + +G L+ + L R++ ++ + Q
Sbjct: 117 VFRIYPN-----NAADISMRGTRYGKLEPKLTMKIDPVKLPRLI--GKEGSMINMIKDQT 169
Query: 187 SFEIAVGLNGRVWVNAES 204
+I VG NG +W++ +
Sbjct: 170 KCDILVGQNGIIWIDGDE 187
>gi|269986357|gb|EEZ92655.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 224
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 8/145 (5%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV--LAFEGGTRRNIPKFEIGSLLYVR 127
Y P D ++G V + + + VDI P L + + F IG L+Y R
Sbjct: 57 YYPKEGDDIVGEVTEISSKYWVVDISAPFYTRLDIRDVNFRVEESELSRYINIGDLVYAR 116
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V + P + D S + +G L D M + L ++ + ++
Sbjct: 117 VFRVYPN-----NAADISMRGTRYGKL-DSKMITRIDPVKLPRLIGKEGAMINLIKEETK 170
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVS 212
++ VG NG VWV+ E + + +S
Sbjct: 171 CDLVVGQNGIVWVDGEDKNRAIALS 195
>gi|52548651|gb|AAU82500.1| exosome complex RNA-binding protein 1 [uncultured archaeon
GZfos18B6]
Length = 223
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 25/224 (11%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
K+VVPGD + S+ N+ G G E +V +K G + K V + +Y+P
Sbjct: 3 KVVVPGDFI---SAEVNRA---GEGTYVEDGNVYALKYGVVDDRGTIK--VVALSGKYMP 54
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK----FEIGSLLYVRV 128
D V+G + + + VDI P A L F G + + +I L+ +V
Sbjct: 55 VNGDVVVGKIAEISFPYWIVDIASPYEARLHKSEFGRGEKIDFGNMCEYLDIDDLIVAKV 114
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLS 187
+ + M +L+ + EF + G + E S T + R++ S + ++ L + +
Sbjct: 115 MNVDVMMRIDLALKN------EFKMDGIGRLIEVSPTKVPRIIGRSGS--MIRLLKDKCN 166
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIM---NSESLSAVQQKI 228
I V NGR+W+ S + + L S +M N S + +I
Sbjct: 167 CFIFVAKNGRIWIKG-SSADMDLASQTVMKIANEAHTSGLTDRI 209
>gi|40217445|emb|CAE46378.1| conserved hypothetical protein [uncultured archaeon]
gi|268323828|emb|CBH37416.1| putative exosome complex RNA-binding protein 1 [uncultured
archaeon]
Length = 223
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
K+VVPGD + + + + G G E +V +K G + K V + +Y+P
Sbjct: 3 KVVVPGDFI------STEVNRAGEGTYVEDGNVYALKYGVVDDRGTIK--VVALSGKYMP 54
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK----FEIGSLLYVRV 128
D V+G + + + VDI P A L F G + + +I L+ +V
Sbjct: 55 VNGDVVVGKIAEISFPYWIVDIASPYEARLHKSEFGRGEKIDFGNMCEYLDIDDLIVAKV 114
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLS 187
+ + M +L+ + EF + G + E S T + R++ S + ++ L + +
Sbjct: 115 MNVDVMMRIDLALKN------EFKMDGIGRLIEVSPTKVPRIIGRSGS--MIRLLKDKCN 166
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIM 216
I V NGR+W+ S + + L S +M
Sbjct: 167 CFIFVAKNGRIWIKG-SSADMDLASQTVM 194
>gi|391868728|gb|EIT77938.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp4 [Aspergillus
oryzae 3.042]
Length = 392
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQ 67
++ +V PG++V D + G G S S+I K NK V+ +
Sbjct: 54 DITSGVVTPGEIVTD-----DPQWMRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 148
>gi|169779940|ref|XP_001824434.1| exosome complex component rrp4 [Aspergillus oryzae RIB40]
gi|83773174|dbj|BAE63301.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 392
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQ 67
++ +V PG++V D + G G S S+I K NK V+ +
Sbjct: 54 DITSGVVTPGEIVTD-----DPQWMRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 148
>gi|288930696|ref|YP_003434756.1| RNA binding S1 domain protein [Ferroglobus placidus DSM 10642]
gi|288892944|gb|ADC64481.1| RNA binding S1 domain protein [Ferroglobus placidus DSM 10642]
Length = 226
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK--FEIGSLLYV 126
+Y+P V D V+G+V + + + V+I P +AFLP P +IG ++
Sbjct: 52 KYIPSVGDVVVGVVKEVTVNGWVVEINSPYMAFLPAQENPEMKPNKKPNEVLDIGDIIVA 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+++ +P M L+ D + FG + + + R++ + +++ +L
Sbjct: 112 KIINIDPKMKATLTMKDKMCRPIRFGRI----VAINPARVPRVIGKKGS--MIKLFKNEL 165
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+ VG NG +W+N + ++ E++ ++Q+ + L RI
Sbjct: 166 GVNVIVGQNGLIWLNGDRRKVNIV-------EEAIYIIEQEAHTEGLTDRI 209
>gi|46136891|ref|XP_390137.1| hypothetical protein FG09961.1 [Gibberella zeae PH-1]
Length = 331
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 30/207 (14%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRY 70
D+I PG V+ +N G G DS + + +K NK V + RY
Sbjct: 39 DEIFTPGTVI-----TSNSQWMRGHGTYIPADSSEITSSLAGTLTKTNKLLSVRPLRARY 93
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK---------FE 119
P + D V+G +V+ +A + VD+ +A L + A GG R + F
Sbjct: 94 TPEIGDLVVGRIVEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFA 153
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYM-----FETSTGLSRMLLSSP 174
G L+ V + + L ++ ++G L++G G+ R
Sbjct: 154 EGDLVVAEVQQLHQDGAASLHT-----RSLKYGKLRNGVFAAVTGTGGGGGVVRSKRQVW 208
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVN 201
T V GK ++ +G+NG +W++
Sbjct: 209 TMDVANAGGK---VDVLLGVNGYIWIS 232
>gi|258566429|ref|XP_002583959.1| hypothetical protein UREG_06926 [Uncinocarpus reesii 1704]
gi|237907660|gb|EEP82061.1| hypothetical protein UREG_06926 [Uncinocarpus reesii 1704]
Length = 301
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 54/241 (22%)
Query: 3 AKPSTANLVDK--IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSV----------SVIKA 50
++PS + K IV PG+VV D Q ++ G SV +V+K
Sbjct: 39 SRPSKRPRLSKGTIVTPGEVVTD----DPQWMRGHGTFTPATSSVPSTIIATVAGTVLKT 94
Query: 51 GKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE-- 108
KL P + RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 95 NKLLSVYPLR-------ARYNPEIGDLVIGRIVEVQSRRWKVDVAAPLLANLPLSAINLP 147
Query: 109 GGTRRNIPK---------FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYM 159
GG R F G LL V + + L ++ ++G L++G
Sbjct: 148 GGILRKRTTADELQIRSFFNEGDLLVAEVQSVHQDGSASLHT-----RSLKYGKLRNGIF 202
Query: 160 FETS----------TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVN--AESPST 207
+ TG+ R T P E+ +G+NG +W++ A++ S
Sbjct: 203 LAVAGMGGAGVVRGTGVVRSRRQVWTVP---GANGGSDIEVILGVNGYIWISKRADAASA 259
Query: 208 V 208
V
Sbjct: 260 V 260
>gi|242035081|ref|XP_002464935.1| hypothetical protein SORBIDRAFT_01g029120 [Sorghum bicolor]
gi|241918789|gb|EER91933.1| hypothetical protein SORBIDRAFT_01g029120 [Sorghum bicolor]
Length = 2065
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 LGGGLRQECDSVSVIK-AGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIV 82
LGGGLR E SVS ++ A + SKPN ++++YVP V + GI+
Sbjct: 1944 LGGGLRTEVPSVSELQTASTVPSSKPNVSTTNRAKRKYVPTVSNANRGIL 1993
>gi|134079734|emb|CAK40872.1| unnamed protein product [Aspergillus niger]
Length = 357
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQ 67
N+ ++ PG++V D + G G S S+I K NK V+ +
Sbjct: 54 NIGAGVLTPGEIVTD-----DPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 148
>gi|408396755|gb|EKJ75909.1| hypothetical protein FPSE_03857 [Fusarium pseudograminearum CS3096]
Length = 331
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 30/207 (14%)
Query: 12 DKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQKRY 70
D+I PG V+ +N G G DS + + +K NK V + RY
Sbjct: 39 DEIFTPGTVI-----TSNSQWMRGHGTYIPADSSEITSSLAGTLTKTNKLLSVRPLRARY 93
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRRNIPK---------FE 119
P + D V+G +V+ +A + VD+ +A L + A GG R + F
Sbjct: 94 TPEIGDLVVGRIVEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFA 153
Query: 120 IGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYM-----FETSTGLSRMLLSSP 174
G L+ V + + L ++ ++G L++G G+ R
Sbjct: 154 EGDLVVAEVQQLHQDGAASLHT-----RSLKYGKLRNGVFAAVTGTGGGGGVVRSKRQVW 208
Query: 175 TCPVLEELGKQLSFEIAVGLNGRVWVN 201
T V GK ++ +G+NG +W++
Sbjct: 209 TMDVANAGGK---VDVLLGVNGYIWIS 232
>gi|407464318|ref|YP_006775200.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
gi|407047506|gb|AFS82258.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
Length = 227
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 19/176 (10%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSL 123
+Y+P + D V+G V+ + ++ +DI + FLP F K + G L
Sbjct: 55 KYIPKINDLVIGKVISHSSLSWELDINSCYVGFLPAQDVFGRDFSAHADELTSKLKSGDL 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEEL 182
+ R+ + +P ++ +D + G + G + + S + + R++ + + E+
Sbjct: 115 VAARIANFDRTRDPLVTISD-----RDLGKIDSGDLVKISPSKVPRLIGKRGSMIQMIEM 169
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ + +G NG V V+ E+P ++ AI + +K V L ++K
Sbjct: 170 ATNAA--VTIGQNGWVVVSCETPEGLLKAKKAI------EMINEKAHVANLTDQVK 217
>gi|317032517|ref|XP_001395031.2| exosome complex component rrp4 [Aspergillus niger CBS 513.88]
Length = 390
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQ 67
N+ ++ PG++V D + G G S S+I K NK V+ +
Sbjct: 54 NIGAGVLTPGEIVTD-----DPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 148
>gi|347524280|ref|YP_004781850.1| KH domain containing protein [Pyrolobus fumarii 1A]
gi|343461162|gb|AEM39598.1| KH domain protein [Pyrolobus fumarii 1A]
Length = 238
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 59 NKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRR 113
NK V + Y+P D V+G++VD ++ VDIR P A L F T
Sbjct: 51 NKIGVIPLEGPYIPKPGDIVIGLIVDVGVTHWEVDIRAPYTAILTAQEALDRPFNPATDD 110
Query: 114 NIPKFEIGSLLYVRVVKANPGMNPELSCTD------ASGKAAEFGLLKDGYMFETSTGLS 167
+ ++IG + +V + +P L+ +G E + + +
Sbjct: 111 LLRYYQIGDYIVAKVTSFDRTHDPYLTVKGKGLGKIVTGSIVEIKPSRVPRVIGKKASMV 170
Query: 168 RMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVN 201
ML+S C I VG NGR+ V
Sbjct: 171 NMLVSLTGC------------NIVVGQNGRILVQ 192
>gi|424819351|ref|ZP_18244460.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|326422443|gb|EGD71842.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 224
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV--LAFEGGTRRNIPKFEIGSLLYVR 127
Y P D ++G V + + + VDI P L + + F IG L+Y R
Sbjct: 57 YYPKEGDDIVGEVTEISSKYWVVDISAPFYTRLDIRDVNFRVEESELSRYINIGDLVYAR 116
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQL 186
V + P + D S + +G L+ + L R++ ++ + ++
Sbjct: 117 VFRVYPN-----NAADISMRGTRYGKLESKMITRIDPVKLPRLI--GKEGAMINLIKEET 169
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVS 212
++ VG NG VWV+ E + + +S
Sbjct: 170 KCDLVVGQNGIVWVDGEDKNRAIALS 195
>gi|358369064|dbj|GAA85679.1| exosome complex exonuclease Rrp4 [Aspergillus kawachii IFO 4308]
Length = 390
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQ 67
N+ ++ PG++V D + G G S S+I K NK V+ +
Sbjct: 54 NIGAGVLTPGEIVTD-----DPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF 107
RY P + D V+G +V+ ++ + VD+ P +A LP+ A
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 148
>gi|345562044|gb|EGX45116.1| hypothetical protein AOL_s00173g217 [Arthrobotrys oligospora ATCC
24927]
Length = 350
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 35/207 (16%)
Query: 14 IVVPGDVVLD-------LSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VES 65
IV PG+VV + + +Q + GG S S++ + SK NK + +
Sbjct: 52 IVTPGEVVTEDPQWMRGHGTYLSQPLAPGG-------SQSIVSSLAGTISKTNKLLSIRA 104
Query: 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIA--FLPVLAFEGGTRRNIPK------ 117
+ RYVP + D V+G +++ + + VDI P A L + GG R
Sbjct: 105 LKFRYVPEIGDLVVGRILEVQTKRWRVDIAAPHSATLLLSSINLPGGILRKRTSTDELQI 164
Query: 118 ---FEIGSLLYVRV-VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSS 173
F G LL V +N G+ ++ ++G L++G G+ R + S
Sbjct: 165 RTFFSEGDLLVAEVQTLSNDGL------ASLHTRSLKYGKLRNGVFMTIDAGMVRRMKSH 218
Query: 174 PTCPVLEELGKQLSFEIAVGLNGRVWV 200
G ++ +I +G+NG +++
Sbjct: 219 VLTMNTSNGGGEV--DIYLGVNGYIYI 243
>gi|156937006|ref|YP_001434802.1| exosome complex RNA-binding protein Rrp4 [Ignicoccus hospitalis
KIN4/I]
gi|156565990|gb|ABU81395.1| ribosomal RNA-processing protein RRP4 [Ignicoccus hospitalis
KIN4/I]
Length = 239
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 19/227 (8%)
Query: 13 KIVVPGDVVLDLSSMTN-QTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYV 71
KIV+PGD+V+ + N ++I L + D+V AG + + + Y+
Sbjct: 11 KIVMPGDLVVKGNYTINPKSIMY---LYKVGDAVYAAVAGMAEITNGTVSLI-PFEGTYI 66
Query: 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG----TRRNIPKF-EIGSLLYV 126
P D V+G+V + ++ VDI P I L V G + N+ ++ +IG +
Sbjct: 67 PKPGDLVIGVVENFVVTHWQVDINSPYIGILHVSNLLGRPYNPAKDNLKEYLDIGDYIIA 126
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+V + +P L + GK G + +G + E ++ +L +
Sbjct: 127 KVESFDRTKDPIL---NVQGKG--LGRVVEGKIVEIKPSRVPRVIGKKKS-MLNVIKGDT 180
Query: 187 SFEIAVGLNGRVWV---NAESPSTVVLVSNAIMNSESLSAVQQKIMV 230
EI VG NGR+W+ N + V L I + + +K+ V
Sbjct: 181 GCEIIVGANGRIWIKCPNKDLEDIVTLAIKLIEREAFATGLTEKVRV 227
>gi|350631728|gb|EHA20099.1| hypothetical protein ASPNIDRAFT_130155 [Aspergillus niger ATCC
1015]
Length = 741
Score = 37.0 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYW-VESSQ 67
N+ ++ PG++V D + G G S S+I K NK V+ +
Sbjct: 405 NIGAGVLTPGEIVTD-----DPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLR 459
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE--GGTRR 113
RY P + D V+G +V+ ++ + VD+ P +A LP+ A GG R
Sbjct: 460 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILR 507
>gi|403221661|dbj|BAM39793.1| conserved hypothetical protein [Theileria orientalis strain
Shintoku]
Length = 268
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+V+PGDVV +S Q G G + + +G ++ Y VE RY+
Sbjct: 6 LVLPGDVVSSDASYLLQ----GHGTHVSRNELKASYSGLVKHVNQLVY-VEPFSGRYMGQ 60
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF---EGGTRRNIPK--FEIGSLLYVRV 128
+ D V+GIV + + +F+D+ A L +L E RR I + +E+ +L V+
Sbjct: 61 IGDIVIGIVESIQGNKWFLDVNSVERAHLSILQVNTEELANRRKIDEDVYEMSNLFRVKD 120
Query: 129 VKANPGMNPELSCTDASG------KAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+ ++ E+ SG + +++G L +G + L V+ ++
Sbjct: 121 I-----ISSEIQRISPSGTIILQTRTSKYGRLDNGILVVVRPNL-----------VMRQV 164
Query: 183 GKQLSFEIAV----GLNGRVWV 200
E V G NG +W+
Sbjct: 165 KHIYDMECGVRVIMGCNGYIWL 186
>gi|118576720|ref|YP_876463.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
gi|118195241|gb|ABK78159.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
Length = 225
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSLL 124
Y P V D V+G V + + V+I + FLP F+ K G L+
Sbjct: 55 YYPKVGDLVIGKVTSHSSLAWEVEINSCYVGFLPASDVFGRGFDAQGDELSSKLAKGELV 114
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELG 183
RV + +P ++ + + G + G + S + ++R++ ++E +
Sbjct: 115 AARVANFDRTRDPLVTVAER-----DLGKIDTGDLVTISPSKVARLI--GKRGAMIETIE 167
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
K + +G NGRV V+ ESP ++ AI V+++ + L R++
Sbjct: 168 KATGATVTIGQNGRVVVSCESPDGLLKAKKAI------QMVEEQAHMSNLTDRVR 216
>gi|71030016|ref|XP_764650.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351606|gb|EAN32367.1| hypothetical protein, conserved [Theileria parva]
Length = 263
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 38/212 (17%)
Query: 14 IVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPC 73
+VVPGDVV SS Q G G + G ++ Y VE +YV
Sbjct: 6 VVVPGDVVSSDSSFLLQ----GHGTYVSDKQLRASYLGSVKHVNQLVY-VEPFGGKYVGQ 60
Query: 74 VEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF---EGGTRRNIPK--FEIGSLLYVRV 128
+ D V+G+V + + +F+D+ +A L +L E RR I + +E+ +L V
Sbjct: 61 IGDIVIGVVDSIQGNKWFLDVNAVELAQLSILQVNTEELANRRKIDEDIYEMSNLFNV-- 118
Query: 129 VKANPGMNPELSCTDASG------KAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEEL 182
N ++ E+ +G + +++G L++G + + L V+ +
Sbjct: 119 ---NDIVSCEIQRISPTGTIMLQTRTSKYGKLENGILVKIKPNL-----------VIRK- 163
Query: 183 GKQL-----SFEIAVGLNGRVWVNAESPSTVV 209
GK + I +G NG +W+ ++ ++
Sbjct: 164 GKHIYDMECGVRIILGCNGYIWLTSQKAHELL 195
>gi|70606426|ref|YP_255296.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
DSM 639]
gi|449066638|ref|YP_007433720.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
N8]
gi|449068912|ref|YP_007435993.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364177|sp|Q4JB26.1|ECR1_SULAC RecName: Full=Probable exosome complex RNA-binding protein 1
gi|68567074|gb|AAY80003.1| conserved Archaeal KH domain protein [Sulfolobus acidocaldarius DSM
639]
gi|449035146|gb|AGE70572.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
N8]
gi|449037420|gb|AGE72845.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
Ron12/I]
Length = 249
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 33/236 (13%)
Query: 14 IVVPGDVVLDLS---SMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
IV PGD++ + + K+ G + +K G + P +ESS RY
Sbjct: 14 IVTPGDLIAEGEFQVPWSPYYYKVNGKYYSAITGLITVKDGSIFEVIP----LESS--RY 67
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------GTRRNIPKFEIGSL 123
P V DT++G+V D + + +DI+ A+LP + G RR + ++G
Sbjct: 68 YPKVGDTIIGLVEDIEIYGWVIDIKSFYSAYLPASSLLGRPISPGEDVRRYL---DVGDY 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEEL 182
+ ++ + ++P L+ K G + G + + + R++ + + ++E L
Sbjct: 125 VIAKIEAFDRTISPVLTV-----KGKGLGRIPLGTVMDIMPVKVPRVIGKNRS--MIEVL 177
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ EI V NGR+ + + L+ A++ E+++ +Q + L +RI+
Sbjct: 178 TSESGCEIFVAQNGRIHIKCANN----LIEEALI--EAINIIQSESHTKGLTERIR 227
>gi|254169371|ref|ZP_04876200.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197621690|gb|EDY34276.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 203
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
+ KIVVPG+ + + N G L + I+AG + V Y
Sbjct: 7 IRKIVVPGEEIDEKGKPGNGVFVENGKLYSAYLGIVDIRAGYVN--------VIPLSGCY 58
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFL-----PVLAFEGGTRRNIPKFEIGSLLY 125
VP D V+G ++D N+ VDI P A L P G T R IG ++
Sbjct: 59 VPKKGDKVIGKIIDLAPMNWVVDINAPYYAPLHVNDVPWRVDFGDTGR---YLSIGDVIL 115
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETST-GLSRMLLSSPTCPVLEELGK 184
+V N EL + K L+ G++ + S + R++ + +++ L
Sbjct: 116 AKVSNVN-----ELGQVWITMKEQGLRKLEGGHIIKISPFKVPRVIGKGGS--MIQMLKD 168
Query: 185 QLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
I VG NG +W++ P ++ V AI E+
Sbjct: 169 YTGCRIYVGQNGVIWISG-PPEGIITVIKAIRMIEN 203
>gi|374724590|gb|EHR76670.1| exosome complex RNA-binding protein Rrp4 [uncultured marine group
II euryarchaeote]
Length = 243
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 17/181 (9%)
Query: 33 KLGGGLRQECDSVSVIKAGKLRFSKP--NKYWVESSQKRYVPCVEDTVLGIVVDCKADNF 90
++G G + D+ I A +L ++K N V+ Y+P D ++ +V + + + +
Sbjct: 38 RIGSGAIAQNDT---IIATRLGWTKEFNNTVSVDPINSAYMPRSGDLIVAVVAEVRNNLW 94
Query: 91 FVDIRGPTIAFLPV----LAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASG 146
F++I GP LP+ E G R IG ++ RV + + N L+
Sbjct: 95 FMNINGPFQGLLPMSLAPWKVEFGAARQ--HMGIGDVVLARVQEVDECHNVVLTM----- 147
Query: 147 KAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPS 206
K L G + L V + L I +G NGRVW++ +
Sbjct: 148 KGVGLRRLNQGTIVNVPINHIDRLRGEGNATV-QRLRDAADSRIIIGENGRVWIDGNAEG 206
Query: 207 T 207
T
Sbjct: 207 T 207
>gi|432328764|ref|YP_007246908.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Aciduliprofundum sp. MAR08-339]
gi|432135473|gb|AGB04742.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Aciduliprofundum sp. MAR08-339]
Length = 230
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFL-----PVLAFEGGTRRNIPKFEIGSLL 124
Y+P D V+G ++D N+ VDI P A L P G T R IG ++
Sbjct: 58 YIPKKGDKVIGKIIDLAPMNWVVDINAPYYAPLHVNDVPWRVDFGDTGR---YLSIGDVV 114
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETST-GLSRMLLSSPTCPVLEELG 183
+V N EL + K L+ G++ + S + R++ + +++ L
Sbjct: 115 LAKVSNVN-----ELGQVWITLKEPGLRKLEGGHIIKISPFKVPRVIGKGGS--MIQMLK 167
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
+ I VG NG +W++ SP +V V AI ES
Sbjct: 168 EYTGCRIYVGQNGVIWISG-SPEGIVTVIKAIRMIES 203
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,498,440,368
Number of Sequences: 23463169
Number of extensions: 138695858
Number of successful extensions: 291804
Number of sequences better than 100.0: 605
Number of HSP's better than 100.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 290691
Number of HSP's gapped (non-prelim): 631
length of query: 238
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 100
effective length of database: 9,121,278,045
effective search space: 912127804500
effective search space used: 912127804500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)