BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026458
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40 OS=Dictyostelium
discoideum GN=exosc3 PE=3 SV=1
Length = 237
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 134/217 (61%), Gaps = 5/217 (2%)
Query: 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQK 68
L D+ VVPGDV+ + + +++G GL Q D+V KAG LR+SK ++ YW+E+ QK
Sbjct: 4 LKDQFVVPGDVIGKIGDLK---VRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQK 60
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128
RYVP VED V+G +++ A++F VDI A L +FEG T+ N P +G+L+Y RV
Sbjct: 61 RYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCRV 120
Query: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188
AN M PE+ C KA FG L GYM S GLS LLS C +L+ LGK + +
Sbjct: 121 TVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSED-CFLLQILGKHIPY 179
Query: 189 EIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
EIAVG+NGRVW+N+ S ++VSN I NS+ + Q
Sbjct: 180 EIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQ 216
>sp|Q3T0E1|EXOS3_BOVIN Exosome complex component RRP40 OS=Bos taurus GN=EXOSC3 PE=2 SV=1
Length = 275
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ ++ + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E ++A Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRLAE 274
>sp|Q7TQK4|EXOS3_MOUSE Exosome complex component RRP40 OS=Mus musculus GN=Exosc3 PE=1 SV=3
Length = 274
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 138/233 (59%), Gaps = 9/233 (3%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-----YWV 63
VD + G+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV
Sbjct: 42 VDGLGGAGEQPLRLNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWV 101
Query: 64 ESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSL 123
+S QKRYVP D V+GIV+ D F VD+ G A L LAFEG T+RN P ++G L
Sbjct: 102 DSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 161
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEEL 182
+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++EL
Sbjct: 162 IYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQEL 220
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
GK EI G+NGR+WV A++ ++++N + E ++ Q+K + +L +
Sbjct: 221 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAE 273
>sp|Q9NQT5|EXOS3_HUMAN Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3 PE=1 SV=3
Length = 275
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 8/221 (3%)
Query: 22 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVE 75
L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP
Sbjct: 55 LNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKG 114
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM 135
D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M
Sbjct: 115 DHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDM 174
Query: 136 NPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL 194
PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+
Sbjct: 175 EPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGM 233
Query: 195 NGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQ 235
NGR+WV A++ ++++N + E +++ Q+K + +L +
Sbjct: 234 NGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274
>sp|O13903|RRP40_SCHPO Exosome complex component rrp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp40 PE=3 SV=1
Length = 240
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 136/231 (58%), Gaps = 15/231 (6%)
Query: 17 PGDVVLDLSSMTNQTIKLGGGL----RQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
PG+ + D + +I+LG GL + + + V KAG+L + N ++S KRY+P
Sbjct: 15 PGERIPDSIISQDGSIRLGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIP 74
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+G ++ A+ + VDI IA L LAFE TR++ P +GSL+Y RV A+
Sbjct: 75 ATNDQVIGQIISRFAEGYRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVSLAD 134
Query: 133 PGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLS-----RMLLSSPTCPVLEELGKQL 186
M PEL C DA +GKAA +G LK+GYM TGLS +++L P +L+ LG +
Sbjct: 135 RDMEPELECFDATTGKAAGYGELKNGYMI---TGLSLSHCRKLIL--PKNTLLQTLGSYI 189
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
FEIAVG+NGRVWVN+E+ ST VL+ AI N E +S +Q L++++
Sbjct: 190 PFEIAVGMNGRVWVNSENLSTTVLICTAIRNCEFMSDEEQIKYCKDLIKKL 240
>sp|Q08285|RRP40_YEAST Exosome complex component RRP40 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP40 PE=1 SV=2
Length = 240
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 13/196 (6%)
Query: 32 IKLGGGLRQECD----SVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIV 82
+KLG G+ CD + + G L S K +++ S KRY+P V D V+G++
Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVI 76
Query: 83 VDCKADNFFVDIRGPTIAF-LPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141
+ +D++ V ++ + + L +AF +++N P ++G L+Y RV A + E+ C
Sbjct: 77 IGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 136
Query: 142 TDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWV 200
D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV
Sbjct: 137 FDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
Query: 201 NAESPSTVVLVSNAIM 216
E S + IM
Sbjct: 197 KCEELSNTLACYRTIM 212
>sp|E3GZ90|ECR1_METFV Probable exosome complex RNA-binding protein 1 OS=Methanothermus
fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24
S) GN=Mfer_0823 PE=3 SV=1
Length = 222
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLY 125
Q +Y+P D+V+G VVD K + VDIR P A LPV ++N+ + F IG L+
Sbjct: 55 QGKYIPKKNDSVIGKVVDVKFARWIVDIRSPYSAILPVSEVIDKGKKNLEEIFGIGDTLF 114
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQ 185
+++++ + +L + E G L + T + + R++ +++ L K
Sbjct: 115 LKIIEVDEVKKVKLGLHEGGPIKLEGGTL----AYITPSKVPRVI--GRKGSMIKMLKKL 168
Query: 186 LSFEIAVGLNGRVWVNAES 204
+ EI +G NG +WV +
Sbjct: 169 TNCEILLGQNGVIWVKGDK 187
>sp|O29758|ECR1_ARCFU Probable exosome complex RNA-binding protein 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_0492 PE=1 SV=1
Length = 223
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK--FEIGSLLYV 126
RY P V D V+GI+ + A+ + VDI P AFLPV P +IG +
Sbjct: 52 RYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIA 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQL 186
+V+ +P M L+ D + FG + + + R++ + +++ L +L
Sbjct: 112 KVLNIDPKMKVTLTMKDRICRPIRFGRI----VAINPARVPRVIGKKGS--MIKLLKSEL 165
Query: 187 SFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRI 237
+I VG NG +WVN + + E++ ++Q+ + L R+
Sbjct: 166 DVQIVVGQNGLIWVNGDRRKVSIA-------EEAIYLIEQEAHTEGLTDRV 209
>sp|Q8U0L8|ECR1_PYRFU Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1569 PE=3 SV=1
Length = 264
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D VLG +VD K ++ VDI P A L + + R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVLGKIVDVKFSSWTVDIGSPYSATLKIQDYTDEKIDLLRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELG 183
Y +V N N EL+ G G L+ G + + TS+ + R++ ++ +
Sbjct: 120 YAKVKGINEVNNIELTT---KGMPFNGGPLRGGQIIKITSSKVPRVI--GKGGSMINMIK 174
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
K I VG NG +W+++++P L AI+ E S +
Sbjct: 175 KLTQSRIIVGQNGWIWISSKNPELEKLAIEAILKIERESHTR 216
>sp|B1L6N8|ECR1_KORCO Probable exosome complex RNA-binding protein 1 OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1371 PE=3 SV=1
Length = 228
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFE--IGSLLYVR 127
Y+P +D V+GIV + VDIR P LP+ R ++ K++ IG ++ +
Sbjct: 63 YIPKEDDLVIGIVSKISGNTILVDIRSPYQGALPI--QRRAERVDLKKYDLKIGDVILAK 120
Query: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLS 187
V++ G + + DA G G L+ GY+ E ++ +L L +
Sbjct: 121 -VRSFDGASSLILTIDAEG----LGKLEGGYLLEVDPAKVPRVIGKRQS-MLSMLKEATR 174
Query: 188 FEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV 224
EI V NGR+WV S ++++ A+ E S V
Sbjct: 175 SEIIVANNGRIWVKPPSVKELIVLEKALKKIEEESHV 211
>sp|O59221|ECR1_PYRHO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH1551 PE=3 SV=1
Length = 265
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D V+G +VD K ++ VDI P +A L + F R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKIVDVKFSSWVVDIGAPYLANLKIQDFTDEKIDLLRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V E++ D + K F G LK G + + T + + R++ + ++
Sbjct: 120 YGKVKAIT-----EVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGS--MINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG +WVN ++ + L AI+ + S +
Sbjct: 173 IKKLTMTRIIVGQNGWIWVNGKNEALEKLAIEAILKIDRESHTK 216
>sp|E0SQX5|ECR1_IGNAA Probable exosome complex RNA-binding protein 1 OS=Ignisphaera
aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1)
GN=Igag_1503 PE=3 SV=1
Length = 253
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPKF-EIGSL 123
RY+P D V+GIVVD ++ +DI P ++ L + G + NI K+ EIG +
Sbjct: 74 RYIPREGDIVIGIVVDVTLSSWIIDINSPYLSVLNASDYLGRSFNPLTDNIRKYLEIGDV 133
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEEL 182
+ ++ + P L+ D G + DG + E ++R++ + +L L
Sbjct: 134 VVGKIATFDRSRGPILTVQDKG-----LGKVVDGSLIEIEPIKVARVIGKKKS--MLNML 186
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
+Q +I VG NGR+ + +P + AI ES
Sbjct: 187 IEQTKCDILVGNNGRIILRCPNPELEYIAILAIKKIES 224
>sp|Q6L222|ECR1_PICTO Probable exosome complex RNA-binding protein 1 OS=Picrophilus
torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 /
NBRC 100828) GN=PTO0395 PE=3 SV=1
Length = 230
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 31/159 (19%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFL-----PVLAFEGGTRRNIPKFEIGSLL 124
Y+P + D V+G V+D A + VDI P + + P G R+ + +G +
Sbjct: 55 YMPRINDKVIGKVIDVSATMWTVDINSPYFSLMHMNDTPWHVTSGDLRKYL---NVGDYI 111
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCP-VLEELG 183
Y +V N LS D + + E G S + + +P P V+ + G
Sbjct: 112 YAKVSILNEIKESWLSLKDVNLRKLEEG--------------SIIYIKAPKVPRVIGKAG 157
Query: 184 KQLSF-------EIAVGLNGRVWVNAESPSTVVLVSNAI 215
++ +I VG NG +W++ E P V L NAI
Sbjct: 158 NMINMIKSETNTKIIVGQNGLIWIDGE-PENVDLAINAI 195
>sp|Q9V120|ECR1_PYRAB Probable exosome complex RNA-binding protein 1 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06090 PE=3 SV=1
Length = 265
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT----RRNIPK-FEIGSLL 124
Y+P V D V+G +VD K ++ VDI P A L + F R ++ K F+IG ++
Sbjct: 60 YIPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDII 119
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVLEE 181
Y +V E++ D + K F G LK G + + T + + R++ + ++
Sbjct: 120 YAKVKAIT-----EVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGS--MINM 172
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ K I VG NG +WV+ ++ + L AI+ + S +
Sbjct: 173 IKKLTMTRIIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTR 216
>sp|Q975G7|ECR1_SULTO Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=STK_04440 PE=3 SV=1
Length = 247
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------GTRRNIPKFEI 120
RY+P V DTV+G++ D + + +DI+ P A+LP +F G RR + +
Sbjct: 63 HRYIPKVGDTVIGLIEDVEIYGWVLDIKSPYSAYLPASSFLGRPVSPGEDLRRYL---NL 119
Query: 121 GSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVL 179
G + ++ + +NP LS K G + G + + + R++ + + +L
Sbjct: 120 GDYVIAKIETYDRTINPILSI-----KGKGLGRVSSGIVIDIPPVKVPRVIGKNRS--ML 172
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ L + EI V NGR+ N + ++ A++ E++ ++++ + L ++I+
Sbjct: 173 DTLTSETGCEILVAQNGRILANCATK----MIEEALV--EAIQIIEKESHIKGLTEKIR 225
>sp|A5UJS0|ECR1_METS3 Probable exosome complex RNA-binding protein 1
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0243 PE=3 SV=1
Length = 298
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 14 IVVPGDVVLDLSSMTNQ-TIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
+V+PG+V+ D + + T K G + + ++ K+R V + +YVP
Sbjct: 9 LVIPGEVLADDEYYSGRGTFKENGKICSSLMGLVSLRNKKIR--------VIPLKSKYVP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLYVRVVKA 131
D V+G + D + + VDI P LP G ++ + K F++G +L++RVV
Sbjct: 61 KKGDVVIGKIKDVRFSMWDVDINSPYSGILPAFEVFGREKKELNKVFDVGDVLFLRVVDV 120
Query: 132 NPGMNPELSCTDASGKAAEFGLLKDGYMFE-TSTGLSRMLLSSPTCPVLEELGKQLSFEI 190
+ +L K G + G + + T T + R++ ++ + + + +I
Sbjct: 121 DEVKKVKLGL-----KGRGMGKFRGGIIVDITPTKVPRLI--GKKGSMINMIKDKTNCKI 173
Query: 191 AVGLNGRVWVNAES 204
VG NG VWV E
Sbjct: 174 IVGQNGLVWVKGEE 187
>sp|Q9UXC4|ECR1_SULSO Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0736 PE=1 SV=1
Length = 249
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT-------RRNIPKFEIGS 122
Y P + D V+G+V D + + VDI+ P A+LP G + RR + ++G
Sbjct: 68 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYL---DVGD 124
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEE 181
+ R+ + ++P LS K + G + +G + + + R++ + + + E
Sbjct: 125 YVIARIENFDRSIDPVLSV-----KGKDLGRVSNGIVIDIMPVKVPRVIGKNKS--MYET 177
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
L + I V NGR+W S + ++ AI E+ S + K + D++ Q I+
Sbjct: 178 LTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHI--KGLTDRIKQFIE 232
>sp|Q5JIR5|ECR1_PYRKO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1635 PE=3 SV=1
Length = 257
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGTRRNIPK------FEIGS 122
Y+P V D VLG +VD K ++ VDI P A L V A E R ++ K F+IG
Sbjct: 60 YIPEVGDNVLGKIVDVKFSSWTVDIGAPYQASLRVQDAVE--ERIDLLKTDLRKIFDIGD 117
Query: 123 LLYVRVVKANPGMNPELSCTDASGKAAEF--GLLKDGYMFE-TSTGLSRMLLSSPTCPVL 179
++Y +V N E++ D + K F G L+ G + T + + R++ ++
Sbjct: 118 IIYAKVKAFN-----EVNQIDLTTKGMPFKGGPLRGGQLVTITPSKVPRLI--GKGGSMI 170
Query: 180 EELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQ 225
+ I VG NG VWV+ ++ L AI+ + S Q
Sbjct: 171 NMIKTLTGTRIIVGQNGWVWVSGKNDELERLAIEAILKVDRESHTQ 216
>sp|Q469M4|ECR1_METBF Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A2505 PE=3
SV=1
Length = 260
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD++ + + K G G + D + + G + K +K V Y+P
Sbjct: 4 KIVIPGDLI------SENSKKAGYGTYVKNDKIYSLFCG-IENLKEDKVGVIPLAGVYIP 56
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG--GTRRNIPKFEIGSLLYVRVVK 130
D V+GIV+ N+ +DI P V + +R +G + +RV
Sbjct: 57 SANDVVIGIVIVVTPSNWIMDIASPYDGLFHVSEYPRRIESREMHEVLNVGDSIILRVKD 116
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLSFE 189
+ M EL+ D+S F LK G + E + R++ + ++ L K+ +
Sbjct: 117 VDNSMKVELALRDSS-----FHKLKTGQIVEVEPVKVPRVIGHGGS--MISMLKKETNCS 169
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
I VG NGR+W++ + V L+S A+ E + Q+ + D++ +K
Sbjct: 170 IFVGQNGRIWIDGKD-DDVELLSKALRKIE--AEAQRSGLTDRIYNFLK 215
>sp|Q8PTT9|ECR1_METMA Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=MM_2622 PE=3 SV=1
Length = 260
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD+ +++ K G G + D + G + K +K V Y+P
Sbjct: 4 KIVIPGDL------LSDDVKKSGYGTYVKNDKIYSSLCG-IESLKEDKVGVIPLAGAYIP 56
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR-RNIPK-FEIGSLLYVRVVK 130
V D V+G+V+ N+ +DI P L V + R +P+ ++G + +RV
Sbjct: 57 SVNDVVIGVVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRD 116
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELGKQLSFE 189
+ M EL+ D + L+ G + E + R++ + ++ L K+ +
Sbjct: 117 VDSSMKIELALRDPN-----LHKLRTGQIVEVEPVKVPRVIGHGGS--MISMLKKETNCS 169
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
I VG NGR+W++ + + L+S A+ E + Q+ + D++ +K
Sbjct: 170 IFVGQNGRIWIDGKD-EDIELLSKALRKIE--AEAQRSGLTDRIYNFLK 215
>sp|O26780|ECR1_METTH Probable exosome complex RNA-binding protein 1
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_684 PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 67 QKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPK-FEIGSLLY 125
Q +Y+P D V+G + D + + +DI P LP G +R + F+I +L
Sbjct: 55 QSKYIPKRGDVVIGEITDIRFSMWGLDINSPYTGLLPASEVFGKDKRELESVFDIVDVLL 114
Query: 126 VRVVKANPGMNPELSCTDASGKAAEFGLLKDGYM-FETSTGLSRMLLSSPTCPVLEELGK 184
+RVV + +L K G +DG + + T T + R++ ++ + +
Sbjct: 115 LRVVDVDEVKKVKLGL-----KGRGLGKFRDGILVYITPTKVPRLI--GKRGSMINMVKE 167
Query: 185 QLSFEIAVGLNGRVWVNAE 203
+ +I VG NG VW+ E
Sbjct: 168 KTHCDIVVGQNGVVWIKGE 186
>sp|Q8TPX7|ECR1_METAC Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1777 PE=3 SV=1
Length = 260
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
KIV+PGD+ ++ K G G + D + G + K +K V Y+P
Sbjct: 4 KIVIPGDL------LSENQKKAGYGTYVKNDKIYSSLCG-IENLKEDKVGVIPLAGAYIP 56
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTR-RNIPK-FEIGSLLYVRVVK 130
D V+GIV+ N+ DI P L V + R +P+ +G + +RV
Sbjct: 57 SANDVVIGIVIVVTPSNWIFDIAAPYDGLLHVSEYPRRVESREMPEILNVGDSVILRVKD 116
Query: 131 ANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEELGKQLSFE 189
+ M EL+ D S LK G + + S + R++ + ++ L K+ +
Sbjct: 117 VDSSMKVELALRDPS-----LHKLKTGQIIKVESVKVPRVIGHGGS--MISMLKKETNCS 169
Query: 190 IAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
I VG NGR+W++ + + L+S A+ E L A Q+ + D++ +K
Sbjct: 170 IFVGQNGRIWIDGKD-EDIELLSKALRKIE-LEA-QRSGLTDRIYNFLK 215
>sp|Q12ZB8|ECR1_METBU Probable exosome complex RNA-binding protein 1 OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_0198 PE=3 SV=1
Length = 263
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN-IPKF-EIGSLLYV 126
+Y+P +D ++ V+D N+ ++ P L V F + + KF ++G + V
Sbjct: 52 KYIPSRKDFIIVNVIDVTPSNWIMETGSPYDGLLHVSEFPKRVDSSEMRKFMDVGDCVIV 111
Query: 127 RVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEELGKQ 185
RV + M ELS + +A L G + E + + R++ + + L K+
Sbjct: 112 RVKDVSKAMKVELSMREQGSRA-----LSKGRIIEVVPSKVPRVIGHGGSMVSI--LKKE 164
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSN-AIMNSES-LSAVQQKI 228
+ ++ VG NGR+W+N + L + ++ SES +S + K+
Sbjct: 165 SNCDVFVGKNGRIWINGKDKDMDRLTTAIEMIESESHMSGLTDKV 209
>sp|A9A5C8|ECR1_NITMS Probable exosome complex RNA-binding protein 1 OS=Nitrosopumilus
maritimus (strain SCM1) GN=Nmar_0431 PE=3 SV=1
Length = 226
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPV-----LAFEGGTRRNIPKFEIGSL 123
+Y+P + D V+G V + ++ +DI + FLP F K G L
Sbjct: 55 KYIPKINDLVIGKVNSHTSLSWELDINSCYVGFLPAQDVFGRDFSAHADELATKLRTGDL 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELG 183
+ R+ + +P +S +D + G + G + E S L+ +++ +
Sbjct: 115 VAARIANFDRTRDPLVSISD-----RDLGKIDSGVLMEISPSKVPRLIGKKGS-MIQMIE 168
Query: 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV-----QQKIMVDK 232
+ + +G NG V V+ ESP ++ AI + V Q K M+DK
Sbjct: 169 EATDAAVTIGQNGWVVVSCESPEGLLKAKKAIQMVNEQAHVANLTDQVKEMLDK 222
>sp|A1RXQ7|ECR1_THEPD Probable exosome complex RNA-binding protein 1 OS=Thermofilum
pendens (strain Hrk 5) GN=Tpen_0582 PE=3 SV=1
Length = 237
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG----TRRNIPK-FEIGSL 123
+Y P V+G VVD ++ VDI P +A LPV +R + + ++G L
Sbjct: 66 KYFPVEGHIVVGKVVDIGFTSWEVDINSPYVAVLPVSEVTSRPVTISRNELSRILDVGDL 125
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRML-LSSPTCPVLEE 181
+ ++V + +P L+ K + G + G + E + R++ ++E+
Sbjct: 126 ILAKIVSFDLSKDPVLTI-----KESRLGKIPRGTLVEIPPQKVPRVIGRRGSMVSMIED 180
Query: 182 LGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220
L L ++ VG NGR+ V + P V + A+ E+
Sbjct: 181 L---LGVKLIVGQNGRIVVVGDDPQRVEIAVLAVRKIEA 216
>sp|Q4JB26|ECR1_SULAC Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_0611 PE=3 SV=1
Length = 249
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 104/236 (44%), Gaps = 33/236 (13%)
Query: 14 IVVPGDVVLDLS---SMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRY 70
IV PGD++ + + K+ G + +K G + P +ESS RY
Sbjct: 14 IVTPGDLIAEGEFQVPWSPYYYKVNGKYYSAITGLITVKDGSIFEVIP----LESS--RY 67
Query: 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------GTRRNIPKFEIGSL 123
P V DT++G+V D + + +DI+ A+LP + G RR + ++G
Sbjct: 68 YPKVGDTIIGLVEDIEIYGWVIDIKSFYSAYLPASSLLGRPISPGEDVRRYL---DVGDY 124
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFET-STGLSRMLLSSPTCPVLEEL 182
+ ++ + ++P L+ K G + G + + + R++ + + ++E L
Sbjct: 125 VIAKIEAFDRTISPVLTV-----KGKGLGRIPLGTVMDIMPVKVPRVIGKNRS--MIEVL 177
Query: 183 GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQRIK 238
+ EI V NGR+ + + L+ A++ E+++ +Q + L +RI+
Sbjct: 178 TSESGCEIFVAQNGRIHIKCANN----LIEEALI--EAINIIQSESHTKGLTERIR 227
>sp|Q9YC02|ECR1_AERPE Probable exosome complex RNA-binding protein 1 OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=APE_1448 PE=1 SV=1
Length = 235
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 6 STANLVDKIVVPGD-----------VVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLR 54
S L +IVVPG+ V+D + T+ G LR++ D G
Sbjct: 3 SERQLAGRIVVPGEPLPEEVEASPPYVIDYKGVKRATVV--GLLREKGD------GGGRA 54
Query: 55 FSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRN 114
F K + YVP D V+G++ N+FVDI P +A L V F G R
Sbjct: 55 FVKLKEI--------YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLG--RPF 104
Query: 115 IPK-------FEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLS 167
P ++G + +VV + +P L+ + G + G + E S
Sbjct: 105 NPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTV-----QGEGLGRIVRGKIVEISPAKV 159
Query: 168 RMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNA--ESPSTVVLVSNAIMNSESLSA 223
++ +L+ L ++ +I V NGR+ + E + +++ I++ E+ ++
Sbjct: 160 PRVIGRKMS-MLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYTS 216
>sp|Q8TYC0|ECR1_METKA Probable exosome complex RNA-binding protein 1 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0382 PE=3 SV=1
Length = 239
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVL-AFEGGT---RRNIPK-FEIGSLL 124
Y P D V+GIV + K ++ +D+R P A L V A E ++ + + G ++
Sbjct: 62 YRPSPGDFVVGIVEEVKFSSWLIDVRAPLPAILHVSNALEEEVDLIETDLSRYYRPGDVI 121
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS-TGLSRMLLSSPTCPVLEELG 183
V + +P ELS + G L+ G + E + R++ + +++ L
Sbjct: 122 TAVVREVDPVQRVELSLLEDDA-PTRLGRLQGGQVVEIDPVKVPRVIGRKGS--MIKMLK 178
Query: 184 KQLSFEIAVGLNGRVWVNA-ESP--STVVLVSNAIMNSESLSAVQ 225
+ L +I VG NGR++V A E P +L AI E S ++
Sbjct: 179 RVLGCDIVVGANGRIYVRAREEPKKERELLAVRAIREIERRSHLR 223
>sp|Q8ZVM8|ECR1_PYRAE Probable exosome complex RNA-binding protein 1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=PAE2208 PE=3 SV=1
Length = 235
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 21/219 (9%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVP 72
++V PGDV+ S + L G + + G + F + + V + Y P
Sbjct: 8 QLVFPGDVIATADSKVEGPVYLDNGKYRS------LVVGLVEF-REDVVVVVPLEGTYKP 60
Query: 73 CVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132
D V+G V D A + VD+R A+LPV R++ ++ +
Sbjct: 61 KKGDLVIGYVTDVLATGWEVDVRSFMPAYLPVGE---ALHRHVDLETTPLTTFLNIGDVV 117
Query: 133 PGMNPELSCTDA-----SGKAAEFGLLKDGYMFE-TSTGLSRML-LSSPTCPVLEELGKQ 185
++ TD + K + G ++ G + E T + R++ L ELG
Sbjct: 118 VAKVKDVDLTDEYPIILTLKDEKVGKVESGTVVEITPVKVPRVIGKRGSMLNTLMELG-- 175
Query: 186 LSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAV 224
+I VG NGR+WV + P V +++ I E+ S V
Sbjct: 176 --CDIVVGQNGRIWVKCKDPRDEVFLASLIRKIEAESHV 212
>sp|Q3M790|MNMG_ANAVT tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=mnmG PE=3 SV=1
Length = 640
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNI 115
WVE+ RY P +ED ++ VD ++ F++ G I L + F G N+
Sbjct: 275 WVEAKGPRYCPSIEDKIVRF-VDKESHQIFIEPEGRDIPELYIQGFSTGLPENL 327
>sp|Q8YR87|MNMG_NOSS1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=mnmG PE=3
SV=1
Length = 640
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNI 115
WVE+ RY P +ED ++ VD ++ F++ G I L + F G N+
Sbjct: 275 WVEAKGPRYCPSIEDKIVRF-VDKESHQIFIEPEGRDIPELYIQGFSTGLPENL 327
>sp|Q8SS35|Y4A0_ENCCU Probable myosin havy chain ECU04_1000 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU04_1000 PE=1 SV=1
Length = 1700
Score = 34.3 bits (77), Expect = 0.83, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 16 VPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVE 75
+PG VL + TN+ I G G + VSV + RF + W SS++ Y
Sbjct: 16 LPG--VLKMEGTTNKDI--GSGSSRPGGEVSVSDEIQRRFMEKKWVWAPSSKEAY----- 66
Query: 76 DTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEI 120
V G VV + D +D RG + F R N PKF++
Sbjct: 67 --VCGFVVKEEGDVLEIDCRGVIVRHKSCEVF----RMNPPKFDM 105
>sp|A6V9L0|NADA_PSEA7 Quinolinate synthase A OS=Pseudomonas aeruginosa (strain PA7)
GN=nadA PE=3 SV=1
Length = 352
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 157 GYMFETSTGLSRMLLSSPTCPVLEEL-GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
G + +TG + MLL C V EE KQL A+ + + V+ ESP +VV ++NA+
Sbjct: 183 GRYIQRATG-ADMLLWDGACIVHEEFKAKQLEDMKALYPDAAILVHPESPESVVALANAV 241
Query: 216 MNSESLSAVQQKI 228
++ L Q +
Sbjct: 242 GSTSQLIRAAQTL 254
>sp|Q3K7X0|NADA_PSEPF Quinolinate synthase A OS=Pseudomonas fluorescens (strain Pf0-1)
GN=nadA PE=3 SV=1
Length = 352
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 157 GYMFETSTGLSRMLLSSPTCPVLEEL-GKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215
G + TG + MLL C V EE KQL A+ + + V+ ESP++V+ +++A+
Sbjct: 183 GTYIQRQTG-ADMLLWDGACIVHEEFKSKQLEDMKALYPDAAILVHPESPTSVIELADAV 241
Query: 216 MNSESLSAVQQKI 228
++ L A Q +
Sbjct: 242 GSTSQLIAAAQSL 254
>sp|Q2NEX6|ECR1_METST Probable exosome complex RNA-binding protein 1 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1250 PE=3 SV=1
Length = 222
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 30/199 (15%)
Query: 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKR--- 69
+IV+PG S +T+ KLG G +E GK+ S + ES Q +
Sbjct: 8 EIVLPG------SLLTDNNYKLGRGTYKEN--------GKIYSSITGLVYFESEQIKVIP 53
Query: 70 ----YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLA-FEGGTRRNIPKFEIGSLL 124
Y P D V+G V ++ +DI FLP ++ I +L
Sbjct: 54 LKDTYSPNYGDLVIGRVTGSSYSSWSIDINSTYHGFLPTTELYDKNEPNINNIINIKDML 113
Query: 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGK 184
+RV + E++ + ++ G G + + L S L + +
Sbjct: 114 LLRVANVD-----EINRVKLTLRSRGLGKFNQGTIIKVKQPTIHFL--SEENAFLTTMIQ 166
Query: 185 QLSF-EIAVGLNGRVWVNA 202
+ ++ ++ +G NG +W+N
Sbjct: 167 EYTYTDVIIGKNGLIWING 185
>sp|Q9HIP3|ECR1_THEAC Probable exosome complex RNA-binding protein 1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta1292 PE=3 SV=1
Length = 236
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 27/200 (13%)
Query: 11 VDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVE--SSQK 68
V KIV+PGD + M N G R + + G L+ N +V+
Sbjct: 7 VKKIVLPGDPIEVQGKMRN------GVYRGQDNRYYSEYFGTLQV---NDQFVDVVPFSG 57
Query: 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFL-----PVLAFEGGTRRNIPKFEIGSL 123
+Y+P D V+G V++ + VDI P A L P G +R + G
Sbjct: 58 QYIPRKGDKVIGKVIEVGPSTWTVDINSPYFAMLHMNDTPWRMSSGDLKRYL---NAGDY 114
Query: 124 LYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRML-LSSPTCPVLEEL 182
+Y +++ N L+ + K E G + + ++ + R++ +++EL
Sbjct: 115 IYAKIMSVNEIKESWLTLKEPGLKKLEGGHM----VLIHASRVPRVIGKGGGMVNMVKEL 170
Query: 183 GKQLSFEIAVGLNGRVWVNA 202
+ I +G NG +W++
Sbjct: 171 ---TATRIIIGQNGLIWIDG 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,733,638
Number of Sequences: 539616
Number of extensions: 3358830
Number of successful extensions: 8036
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7989
Number of HSP's gapped (non-prelim): 40
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)