Query 026458
Match_columns 238
No_of_seqs 149 out of 672
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_G Exosome complex exonucl 100.0 3.3E-62 1.1E-66 436.4 19.6 227 8-235 35-288 (289)
2 2ba0_A Archeal exosome RNA bin 100.0 6.5E-54 2.2E-58 372.5 19.5 209 12-235 2-218 (229)
3 2z0s_A Probable exosome comple 100.0 2E-53 6.9E-58 370.7 15.2 218 6-236 3-232 (235)
4 2ja9_A Exosome complex exonucl 100.0 3.8E-52 1.3E-56 347.7 18.0 170 68-237 1-173 (175)
5 2je6_I RRP4, exosome complex R 100.0 1.5E-52 5.3E-57 368.2 12.1 212 11-236 15-239 (251)
6 2nn6_H Exosome complex exonucl 100.0 2.9E-45 9.8E-50 329.8 12.2 178 9-204 36-224 (308)
7 3m7n_A Putative uncharacterize 100.0 6.6E-29 2.3E-33 207.9 15.2 135 13-163 2-154 (179)
8 2nn6_I 3'-5' exoribonuclease C 99.9 7.4E-28 2.5E-32 206.1 7.8 148 9-166 16-185 (209)
9 2k52_A Uncharacterized protein 98.7 8.3E-08 2.8E-12 69.2 9.5 70 71-143 2-72 (80)
10 2khi_A 30S ribosomal protein S 98.6 1.9E-07 6.5E-12 71.9 9.0 84 60-143 15-102 (115)
11 2khj_A 30S ribosomal protein S 98.6 1.7E-07 5.9E-12 71.4 7.7 74 70-143 27-102 (109)
12 2k4k_A GSP13, general stress p 98.5 2.6E-07 8.8E-12 72.8 8.6 73 71-143 4-78 (130)
13 2eqs_A ATP-dependent RNA helic 98.5 3.9E-07 1.4E-11 68.9 7.3 74 69-143 7-85 (103)
14 2cqo_A Nucleolar protein of 40 98.4 2.4E-07 8.3E-12 72.0 5.3 75 69-143 17-96 (119)
15 1kl9_A Eukaryotic translation 98.4 8.8E-07 3E-11 73.8 8.2 75 69-143 10-88 (182)
16 1go3_E DNA-directed RNA polyme 98.4 9.7E-07 3.3E-11 73.2 8.2 80 69-154 76-173 (187)
17 2a19_A EIF-2- alpha, eukaryoti 98.4 1.4E-06 4.7E-11 72.1 8.8 75 69-143 10-88 (175)
18 3aev_A Translation initiation 98.3 2.2E-06 7.6E-11 75.7 8.9 79 66-144 3-85 (275)
19 1wi5_A RRP5 protein homolog; S 98.2 4.5E-06 1.5E-10 64.4 7.1 74 70-143 17-94 (119)
20 4ayb_E DNA-directed RNA polyme 98.1 1.1E-05 3.7E-10 66.5 9.2 80 69-154 76-172 (180)
21 1luz_A Protein K3, protein K2; 98.1 4.6E-06 1.6E-10 61.3 6.2 71 71-143 8-83 (88)
22 3cw2_C Translation initiation 98.1 4.3E-06 1.5E-10 73.4 6.8 77 68-144 5-85 (266)
23 1q8k_A Eukaryotic translation 98.1 9.1E-06 3.1E-10 72.8 8.6 74 71-144 10-87 (308)
24 2c35_B Human RPB7, DNA-directe 98.1 1E-05 3.5E-10 66.2 7.8 80 69-154 76-171 (172)
25 1y14_B B16, RPB7, DNA-directed 97.6 0.00017 5.7E-09 59.0 7.7 83 69-154 78-171 (171)
26 3h0g_G DNA-directed RNA polyme 97.6 3.8E-05 1.3E-09 63.0 3.7 83 69-154 79-172 (172)
27 2ctl_A Vigilin; K homology typ 97.5 0.00013 4.6E-09 54.3 5.3 60 157-218 18-84 (97)
28 2opv_A KHSRP protein; KH domai 97.5 0.00017 6E-09 52.2 5.5 59 158-218 16-82 (85)
29 1vig_A Vigilin; RNA-binding pr 97.4 0.00024 8.4E-09 49.8 5.5 56 158-215 7-66 (71)
30 2b8k_G B16, DNA-directed RNA p 97.4 0.0003 1E-08 59.9 6.5 84 69-155 78-172 (215)
31 3ayh_B DNA-directed RNA polyme 97.4 0.00037 1.3E-08 58.6 6.9 64 69-133 76-159 (203)
32 3go5_A Multidomain protein wit 97.3 0.00058 2E-08 60.4 8.3 65 72-143 150-216 (285)
33 2asb_A Transcription elongatio 97.3 0.00056 1.9E-08 59.4 7.8 61 69-134 2-69 (251)
34 2ctk_A Vigilin; K homology typ 97.3 0.00026 8.8E-09 53.5 4.6 75 157-236 18-96 (104)
35 1hh2_P NUSA, N utilization sub 97.2 0.00088 3E-08 60.8 8.4 67 69-141 129-196 (344)
36 3psi_A Transcription elongatio 97.2 0.00066 2.3E-08 70.5 8.1 75 70-144 898-975 (1219)
37 4aid_A Polyribonucleotide nucl 97.2 5.5E-05 1.9E-09 74.7 0.0 74 70-143 633-707 (726)
38 1x4m_A FAR upstream element bi 97.0 0.00096 3.3E-08 49.2 5.4 59 158-218 17-83 (94)
39 2ctm_A Vigilin; K homology typ 97.0 0.001 3.5E-08 49.3 5.2 57 158-216 19-80 (95)
40 1k0r_A NUSA; two component arr 96.9 0.0021 7.1E-08 58.7 7.8 69 69-142 125-201 (366)
41 3u1k_A Polyribonucleotide nucl 96.7 0.00069 2.4E-08 66.0 3.3 61 158-222 569-629 (630)
42 3psf_A Transcription elongatio 96.6 0.00033 1.1E-08 71.6 0.0 74 70-143 901-977 (1030)
43 1we8_A Tudor and KH domain con 96.6 0.0019 6.6E-08 48.4 4.2 60 158-222 17-84 (104)
44 3bzc_A TEX; helix-turn-helix, 96.5 0.00077 2.6E-08 67.2 2.2 73 71-143 651-725 (785)
45 3cdi_A Polynucleotide phosphor 96.5 0.0004 1.4E-08 68.7 0.0 74 70-143 623-697 (723)
46 1e3p_A Guanosine pentaphosphat 96.4 0.00038 1.3E-08 69.1 -1.0 74 70-143 663-741 (757)
47 2hh3_A KH-type splicing regula 96.2 0.0071 2.4E-07 45.6 5.5 58 158-217 13-76 (106)
48 2cpq_A FragIle X mental retard 96.2 0.009 3.1E-07 44.1 5.8 67 153-220 10-80 (91)
49 2bx2_L Ribonuclease E, RNAse E 96.1 0.054 1.8E-06 51.6 12.2 72 71-142 42-126 (517)
50 3go5_A Multidomain protein wit 96.0 0.055 1.9E-06 47.6 11.1 63 72-145 4-66 (285)
51 2ckz_B C25, DNA-directed RNA p 96.0 0.06 2E-06 45.6 10.7 65 69-133 76-155 (218)
52 2ctj_A Vigilin; K homology typ 95.2 0.02 6.9E-07 42.3 4.4 59 158-221 19-82 (95)
53 2hh2_A KH-type splicing regula 95.2 0.045 1.5E-06 41.0 6.3 58 159-218 10-76 (107)
54 2jvz_A KH type-splicing, FAR u 95.0 0.021 7.2E-07 45.3 4.1 57 158-216 93-155 (164)
55 1dtj_A RNA-binding neurooncolo 94.9 0.042 1.5E-06 38.2 5.2 56 159-216 6-70 (76)
56 2yqr_A KIAA0907 protein; struc 94.9 0.024 8.3E-07 43.7 4.1 77 154-235 12-109 (119)
57 2p2r_A Poly(RC)-binding protei 94.7 0.032 1.1E-06 39.0 4.0 57 159-217 8-70 (76)
58 1zzk_A Heterogeneous nuclear r 94.5 0.055 1.9E-06 38.4 4.9 55 159-215 10-70 (82)
59 1k1g_A SF1-BO isoform; splicin 94.3 0.073 2.5E-06 41.6 5.6 52 166-218 23-96 (131)
60 2cte_A Vigilin; K homology typ 94.2 0.033 1.1E-06 40.8 3.4 54 158-213 19-76 (94)
61 2axy_A Poly(RC)-binding protei 94.1 0.074 2.5E-06 37.0 4.8 55 159-215 8-66 (73)
62 1wvn_A Poly(RC)-binding protei 94.0 0.057 2E-06 38.3 4.2 56 159-216 9-70 (82)
63 1x4n_A FAR upstream element bi 93.9 0.11 3.6E-06 37.8 5.5 57 158-216 17-79 (92)
64 1j5k_A Heterogeneous nuclear r 93.8 0.052 1.8E-06 39.2 3.7 55 159-215 17-77 (89)
65 1ec6_A RNA-binding protein NOV 93.7 0.079 2.7E-06 38.0 4.5 57 158-216 5-70 (87)
66 2jvz_A KH type-splicing, FAR u 93.7 0.12 4.1E-06 40.8 6.0 58 159-218 5-70 (164)
67 3krm_A Insulin-like growth fac 93.3 0.061 2.1E-06 42.7 3.6 56 159-216 88-151 (163)
68 3d0f_A Penicillin-binding 1 tr 93.2 0.36 1.2E-05 35.8 7.6 58 71-128 30-94 (106)
69 1j4w_A FUSE binding protein; s 89.4 0.43 1.5E-05 38.1 4.8 57 159-217 107-172 (174)
70 2dgr_A Ring finger and KH doma 88.0 0.5 1.7E-05 33.7 3.8 59 159-218 13-73 (83)
71 2bl5_A MGC83862 protein, quaki 87.9 0.33 1.1E-05 38.3 3.1 55 165-220 17-97 (140)
72 2e3u_A PH-DIM2P, hypothetical 87.9 0.63 2.1E-05 39.3 5.0 60 159-219 37-101 (219)
73 2anr_A Neuro-oncological ventr 87.7 0.67 2.3E-05 37.1 4.9 54 158-213 106-167 (178)
74 2jzx_A Poly(RC)-binding protei 86.8 0.31 1.1E-05 38.3 2.3 55 159-215 92-153 (160)
75 2id0_A Exoribonuclease 2; RNAs 86.4 1.4 4.7E-05 42.9 7.1 71 71-141 555-642 (644)
76 2bh8_A 1B11; transcription, mo 86.3 2.5 8.5E-05 31.0 7.0 38 71-108 58-95 (101)
77 2anr_A Neuro-oncological ventr 84.2 1.3 4.4E-05 35.4 4.9 56 159-216 9-73 (178)
78 3krm_A Insulin-like growth fac 83.0 1.5 5.3E-05 34.3 4.8 57 158-216 5-68 (163)
79 1j4w_A FUSE binding protein; s 82.3 1.9 6.5E-05 34.2 5.2 56 158-215 5-66 (174)
80 2jzx_A Poly(RC)-binding protei 82.0 1.6 5.6E-05 34.0 4.6 53 159-213 8-64 (160)
81 2rf4_A DNA-directed RNA polyme 79.8 8.4 0.00029 32.0 8.5 76 60-135 115-203 (214)
82 2dgy_A MGC11102 protein; EIF-1 79.6 17 0.00058 27.2 9.3 56 70-130 10-66 (111)
83 4aid_A Polyribonucleotide nucl 76.2 0.74 2.5E-05 45.5 1.0 57 158-215 572-628 (726)
84 3n89_A Defective in GERM LINE 72.0 4.9 0.00017 36.6 5.3 62 157-219 187-259 (376)
85 2vnu_D Exosome complex exonucl 71.5 5.1 0.00017 39.6 5.7 68 72-140 668-758 (760)
86 3v2d_0 50S ribosomal protein L 71.4 6.4 0.00022 28.3 4.7 54 9-65 25-83 (85)
87 2ctf_A Vigilin; K homology typ 70.5 8 0.00027 28.3 5.3 54 160-215 31-86 (102)
88 2wp8_J Exosome complex exonucl 69.6 11 0.00039 38.3 7.9 69 72-141 885-976 (977)
89 1tua_A Hypothetical protein AP 67.6 7.4 0.00025 32.0 5.0 69 166-237 108-177 (191)
90 3r8s_W 50S ribosomal protein L 65.7 7 0.00024 27.5 3.8 45 9-56 16-61 (76)
91 1d7q_A Translation initiation 63.2 48 0.0016 25.9 8.7 56 71-131 27-83 (143)
92 1q9u_A Uncharacterized protein 62.3 8.4 0.00029 28.9 4.2 73 158-237 56-129 (130)
93 3i4o_A Translation initiation 60.2 24 0.00081 24.8 5.9 48 78-130 16-66 (79)
94 2oqk_A Putative translation in 57.7 22 0.00074 26.8 5.7 53 70-129 27-82 (117)
95 1j3m_A The conserved hypotheti 56.4 13 0.00043 28.0 4.2 47 158-209 53-100 (129)
96 2zjr_T 50S ribosomal protein L 56.4 10 0.00035 27.6 3.4 55 9-66 25-84 (91)
97 2p9r_A Alpha-2-M, alpha-2-macr 52.7 13 0.00045 26.5 3.6 35 113-147 8-48 (102)
98 1y71_A Kinase-associated prote 52.7 17 0.00057 28.1 4.3 33 72-104 8-53 (130)
99 1ah9_A IF1, initiation factor 52.2 40 0.0014 22.7 5.9 47 78-129 8-57 (71)
100 1jt8_A EIF-1A, probable transl 50.5 20 0.00069 26.4 4.4 59 70-132 13-73 (102)
101 2e3u_A PH-DIM2P, hypothetical 49.9 27 0.00091 29.1 5.5 67 166-235 139-206 (219)
102 2ftc_O L27MT, MRP-L27, mitocho 45.3 19 0.00064 24.8 3.2 42 10-54 26-68 (69)
103 3cdi_A Polynucleotide phosphor 44.6 4.6 0.00016 39.8 0.0 52 157-209 561-612 (723)
104 3gr0_A Protein PRGH; type III 42.9 63 0.0022 26.6 6.7 52 184-235 15-72 (197)
105 3n89_A Defective in GERM LINE 42.4 21 0.00073 32.3 4.0 57 160-218 34-103 (376)
106 1e3p_A Guanosine pentaphosphat 41.1 3 0.0001 41.3 -1.9 49 159-208 601-649 (757)
107 3gr1_A Protein PRGH; type III 40.8 69 0.0024 26.9 6.7 52 184-235 15-72 (227)
108 2d74_B Translation initiation 37.5 61 0.0021 25.4 5.5 46 158-204 43-88 (148)
109 2qnd_A FMR1 protein; KH domain 32.7 67 0.0023 24.5 5.0 36 158-194 69-105 (144)
110 1rhy_A IGPD, imidazole glycero 31.9 30 0.001 28.7 2.9 82 125-219 5-89 (202)
111 1a62_A RHO; transcription term 30.5 27 0.00092 26.7 2.3 37 50-86 62-105 (130)
112 3qby_A Hepatoma-derived growth 29.7 19 0.00065 25.9 1.3 18 114-131 2-19 (94)
113 4fu6_A PC4 and SFRS1-interacti 29.6 17 0.00058 28.4 1.0 19 112-130 17-35 (153)
114 2nn6_I 3'-5' exoribonuclease C 28.2 65 0.0022 26.4 4.5 33 72-104 136-170 (209)
115 3p8d_A Medulloblastoma antigen 28.2 97 0.0033 21.0 4.6 52 114-171 3-57 (67)
116 1yez_A MM1357; MAR30, autostru 27.7 1.3E+02 0.0045 19.6 5.9 22 73-94 45-66 (68)
117 2e9h_A EIF-5, eukaryotic trans 27.7 1.3E+02 0.0043 23.9 5.9 47 158-204 40-87 (157)
118 1tua_A Hypothetical protein AP 27.4 1.1E+02 0.0036 24.9 5.6 60 158-218 6-70 (191)
119 3d9y_A Profilin; yeast, actin- 27.3 71 0.0024 23.9 4.2 19 186-204 17-36 (127)
120 1yvc_A MRR5; structure, autost 26.2 1.4E+02 0.0049 19.6 5.3 22 73-94 47-68 (70)
121 2z1c_A Hydrogenase expression/ 26.1 1.4E+02 0.0048 20.5 5.2 40 79-128 6-46 (75)
122 2jsx_A Protein NAPD; TAT, proo 25.8 1.5E+02 0.005 21.2 5.5 56 157-220 9-68 (95)
123 2ae8_A IGPD, imidazoleglycerol 24.9 24 0.00083 29.6 1.2 76 125-218 31-108 (221)
124 1xjv_A Protection of telomeres 24.3 1.1E+02 0.0039 26.0 5.5 36 102-140 52-91 (294)
125 1acf_A Profilin I; protein bin 24.1 74 0.0025 23.7 3.8 28 189-216 19-50 (125)
126 3iuw_A Activating signal coint 23.9 73 0.0025 22.6 3.4 40 114-160 34-77 (83)
127 1h3z_A Hypothetical 62.8 kDa p 23.5 47 0.0016 24.2 2.5 16 115-130 4-19 (109)
128 2f1d_A IGPD 1, imidazoleglycer 23.0 68 0.0023 26.6 3.6 77 125-218 12-90 (207)
129 2z0s_A Probable exosome comple 22.8 87 0.003 26.0 4.4 32 71-102 114-146 (235)
130 1ri0_A Hepatoma-derived growth 22.7 41 0.0014 24.8 2.0 16 115-130 17-32 (110)
131 1r77_A Cell WALL targeting dom 22.1 60 0.0021 24.0 2.8 20 184-203 55-74 (103)
132 2l89_A PWWP domain-containing 21.8 30 0.001 25.4 1.1 16 116-131 4-19 (108)
133 2bh8_A 1B11; transcription, mo 21.3 2.3E+02 0.0077 20.1 7.7 59 74-133 13-74 (101)
134 3pr9_A FKBP-type peptidyl-prol 20.9 1.1E+02 0.0039 23.7 4.4 28 71-98 102-134 (157)
135 1hr0_W Translation initiation 20.8 24 0.00084 23.9 0.4 47 78-129 9-58 (71)
136 2nvm_A FDXN element excision c 20.6 49 0.0017 25.3 2.1 17 187-206 75-91 (126)
137 3k2z_A LEXA repressor; winged 20.5 1.6E+02 0.0054 23.2 5.3 37 49-86 153-193 (196)
No 1
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=3.3e-62 Score=436.43 Aligned_cols=227 Identities=37% Similarity=0.699 Sum_probs=200.3
Q ss_pred cCCCCcEEecCCccCCCCCC------------------CCCceee--cCcEEEeCCEEEEEEeeEeEEecCC------eE
Q 026458 8 ANLVDKIVVPGDVVLDLSSM------------------TNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPN------KY 61 (238)
Q Consensus 8 ~~~~~~iV~PGd~l~~~~~~------------------~~~~~~~--G~G~y~~~g~i~as~~G~v~~~~~~------~i 61 (238)
.++.+++|+|||.|+..+.. ...+|++ |+|||.++++|+|+++|.++.++++ .+
T Consensus 35 ~~~~~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~~~~~I~as~aG~l~~~~~~~~~~~~~v 114 (289)
T 2nn6_G 35 RTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVY 114 (289)
T ss_dssp TGGGSSBCCSSEEECCSCSCCEECSSEEECC-----------------------CCCEEECSCCEEEEECCTTTSSCCEE
T ss_pred hhcCCcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEEECCEEEEEEeEeEEeccCCccCccceE
Confidence 35567899999999865410 0126888 9999999999999999999987442 79
Q ss_pred EEEccCCccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEecCCCCcceEEE
Q 026458 62 WVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSC 141 (238)
Q Consensus 62 ~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~ 141 (238)
||+|.+++|+|++||+|||+|+++++++|+|||++++.|+|+.++|+|++++||++|++||+|||||++++++++++|||
T Consensus 115 ~V~~~~~rYiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 115 WVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp EEECCCSSCCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred EEEecCCCCCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccCCCccc-CCeeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc
Q 026458 142 TDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES 220 (238)
Q Consensus 142 ~~~~~~~~~~G~L-~~G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~ 220 (238)
.++++|+.+||+| .+|++|+|+|+++|||+++.++ ||++|++.++|||+||+||||||++.+++++++++|||++||+
T Consensus 195 ~~~~~k~~~lG~L~~~G~l~~Vs~~lvrrl~~~~~~-~l~~L~~~~~~eI~vG~NG~IWI~~~~~~~~~~i~~aI~~~e~ 273 (289)
T 2nn6_G 195 IDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCE-IIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEH 273 (289)
T ss_dssp SBTTTTBCCCCSCCSSCEEECCCHHHHHHHHCTTCS-HHHHTTCSSSCCCEEETTTEEEECCSSHHHHHHHHHHHHHTTS
T ss_pred cccccccccCCEecCCeEEEEEChHHhhhhhcCchh-HHHHhcccCCeEEEEECCcEEEEecCChhHHHHHHHHHHHhhc
Confidence 9988999999999 9999999999999999987665 9999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 026458 221 LSAVQQKIMVDKLLQ 235 (238)
Q Consensus 221 lt~~~~~~~~~~~~~ 235 (238)
||.+|+++|++++++
T Consensus 274 ~~~~q~~~~~~~~~~ 288 (289)
T 2nn6_G 274 MTSDQRKQIFSRLAE 288 (289)
T ss_dssp SCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999999876
No 2
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=6.5e-54 Score=372.48 Aligned_cols=209 Identities=25% Similarity=0.379 Sum_probs=192.7
Q ss_pred CcEEecCCccCCCCCCCCCceeecCcEEEeCCEEEEEEeeEeEEecCCeEEEEccCCccCCCCCCEEEEEEEEecCceEE
Q 026458 12 DKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFF 91 (238)
Q Consensus 12 ~~iV~PGd~l~~~~~~~~~~~~~G~G~y~~~g~i~as~~G~v~~~~~~~i~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~ 91 (238)
+++|+|||.|+.. +|.+|+|||.++++|+|+++|.+..+ ++.+||.|.+++|.|++||+|+|+|+++.++.|+
T Consensus 2 ~~iV~PGd~l~~~------~~~~G~Gty~~~g~i~as~~G~v~~~-~~~v~V~p~~~~y~p~~GDiV~G~V~~v~~~~a~ 74 (229)
T 2ba0_A 2 RKIVLPGDLLSTN------PRAAGYGTYVEGGKVYAKIIGLFDQT-ETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWA 74 (229)
T ss_dssp CCEECTTCEEESC------TTSBCTTEEEETTEEEECSSEEEEEC-SSCEEEEECSSSCCCCTTCEEEEEEEEECSSEEE
T ss_pred CCEEcCCCCcccC------CeEecCCEEEeCCEEEEEEEEEEEEe-CCEEEEEeCCCcccCCCCCEEEEEEEEEeCCeEE
Confidence 5799999999842 68999999999999999999999986 6689999999999999999999999999999999
Q ss_pred EEecCCeeeeecCcccC--CcccccccCcCCCCEEEEEEEecCCCCcceEEEecCCCccCCCcccCCeeEEEechhhhhh
Q 026458 92 VDIRGPTIAFLPVLAFE--GGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRM 169 (238)
Q Consensus 92 VdI~~~~~a~L~~~~f~--gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~~~~V~~~~v~r 169 (238)
|||++++.|+||.++|. +.+++++++|++||+|+|||+++++++++.|||++ .+||+|.+|++++++|.+++|
T Consensus 75 V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~-----~~lG~L~~G~v~~vs~~~v~r 149 (229)
T 2ba0_A 75 VDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD-----RICRPIRFGRIVAINPARVPR 149 (229)
T ss_dssp EECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCS-----SSCEEESSSEEEECCGGGHHH
T ss_pred EEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEcc-----ccCCcccCCEEEEECHHHhHH
Confidence 99999999999999998 56889999999999999999999999999999987 899999999999999999999
Q ss_pred hcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc------CCHHHHHHHHHHHHh
Q 026458 170 LLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES------LSAVQQKIMVDKLLQ 235 (238)
Q Consensus 170 l~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~------lt~~~~~~~~~~~~~ 235 (238)
++++.++ ||++|++.++||||+|+||||||++. ..+++++++||+++|. || +++++|+++..+
T Consensus 150 l~~~~~~-~l~~l~~~~~~ei~vG~NG~IWi~~~-~~~~~~~~~ai~~~e~~~~~~~l~-~~v~~~l~~~~~ 218 (229)
T 2ba0_A 150 VIGKKGS-MIKLLKSELDVQIVVGQNGLIWVNGD-RRKVSIAEEAIYLIEQEAHTEGLT-DRVAEFIKRRKA 218 (229)
T ss_dssp HHCGGGH-HHHHHHHHHTCEEEECTTSEEEEESC-HHHHHHHHHHHHHHHHCSCCSSHH-HHHHHHHHHHHH
T ss_pred HhcCCch-HHHHhcccCCeEEEEECCcEEEEeCC-chhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhcc
Confidence 9986655 99999999999999999999999975 4599999999999985 44 888888877654
No 3
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=2e-53 Score=370.69 Aligned_cols=218 Identities=21% Similarity=0.275 Sum_probs=150.5
Q ss_pred CccCCCCcEEecCCccCCCCCCCCCceeecCcEEEeCCEEEEEEeeEeEEecC-CeEEEEccCCccCCCCCCEEEEEEEE
Q 026458 6 STANLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKP-NKYWVESSQKRYVPCVEDTVLGIVVD 84 (238)
Q Consensus 6 ~~~~~~~~iV~PGd~l~~~~~~~~~~~~~G~G~y~~~g~i~as~~G~v~~~~~-~~i~V~~~~~~Y~P~vGDiVIG~V~~ 84 (238)
|++++.+++|+|||.|+.. +|.+|+|||.++++|+|+++|.+..+++ +.+||+|.+++|.|++||+|+|+|++
T Consensus 3 ~~~~~~~~iV~PGd~l~~~------~~~~G~Gty~~~~~I~Asv~G~v~~~~~~~~vsV~p~~~~y~p~~GDiV~G~V~~ 76 (235)
T 2z0s_A 3 SERQLAGRIVVPGEPLPEE------VEASPPYVIDYKGVKRATVVGLLREKGDGGGRAFVKLKEIYVPQAGDVVIGLIQS 76 (235)
T ss_dssp ---------------------------------------------------------------CCCCCCTTCCEEEEEEE
T ss_pred CccccCCcEEeCCCCcccC------ceEcCCCEEEECCEEEEEEeEEEEEeCCccEEEEEeCCCccCCCCCCEEEEEEEE
Confidence 4555668899999999852 6999999999999999999999987622 37999999999999999999999999
Q ss_pred ecCceEEEEecCCeeeeecCcccCC-----cccccccCcCCCCEEEEEEEecCCCCcceEEEecCCCccCCCcccCCeeE
Q 026458 85 CKADNFFVDIRGPTIAFLPVLAFEG-----GTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYM 159 (238)
Q Consensus 85 v~~~~~~VdI~~~~~a~L~~~~f~g-----atk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~~ 159 (238)
+.++.|+|||++++.|+||.++|.+ ..++++++|++||+|+|||+++++++.+.|||+. .+||+|++|++
T Consensus 77 v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~-----~~lG~l~gG~v 151 (235)
T 2z0s_A 77 VGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQG-----EGLGRIVRGKI 151 (235)
T ss_dssp ECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCS-----SSCEECCSSEE
T ss_pred EeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEec-----ccCccccCCEE
Confidence 9999999999999999999999865 3567888999999999999999988899999987 89999999999
Q ss_pred EEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc------CCHHHHHHHHHHH
Q 026458 160 FETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES------LSAVQQKIMVDKL 233 (238)
Q Consensus 160 ~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~------lt~~~~~~~~~~~ 233 (238)
++++|.+++|+++++++ ||++|+++++||||+|+||||||+++++++++++++||++||+ || +++++|+++.
T Consensus 152 v~vs~~~~~rl~~~~~~-~l~~l~~~~~~~i~vG~NG~IWi~~~~~~~~~~~~~ai~~~e~~~~~~~l~-~~v~~~l~~~ 229 (235)
T 2z0s_A 152 VEISPAKVPRVIGRKMS-MLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYTSGLT-KRIIKFIEEE 229 (235)
T ss_dssp EECCGGGSGGGTCGGGH-HHHHHHHHHCCEEEEETTTEEEEECSCHHHHHHHHHHHHHHHHCSCCTTCH-HHHHHHHHHH
T ss_pred EEECHHHhHHHhcCcch-HHHHhcccCCeEEEEeCCCEEEEecCCHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHh
Confidence 99999999999986655 9999998999999999999999999999999999999999986 66 8888888876
Q ss_pred Hhh
Q 026458 234 LQR 236 (238)
Q Consensus 234 ~~~ 236 (238)
++.
T Consensus 230 ~~~ 232 (235)
T 2z0s_A 230 RRI 232 (235)
T ss_dssp HHH
T ss_pred hhc
Confidence 654
No 4
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=3.8e-52 Score=347.70 Aligned_cols=170 Identities=31% Similarity=0.642 Sum_probs=165.1
Q ss_pred CccCCCCCCEEEEEEEEecCceEEEEecC-CeeeeecCcccCCcccccccCcCCCCEEEEEEEecCCCCcceEEEecC-C
Q 026458 68 KRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDA-S 145 (238)
Q Consensus 68 ~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~-~ 145 (238)
+||+|++||+|+|+|+++.+++|+|||++ ++.|+||.++|+|++++||++|++||+|+|||++++.+++++|||.++ +
T Consensus 1 krY~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~~~~ 80 (175)
T 2ja9_A 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTT 80 (175)
T ss_dssp CCCCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCTTT
T ss_pred CCccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecCCCceEEEeccccc
Confidence 58999999999999999999999999999 999999999999999999999999999999999999999999999997 4
Q ss_pred CccCCCcccCCeeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHH-hccCCHH
Q 026458 146 GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMN-SESLSAV 224 (238)
Q Consensus 146 ~~~~~~G~L~~G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~-~e~lt~~ 224 (238)
+|+.+||+|++|++|+|||+++|||+++++++||++|+++++|||++|+||||||+++++++++++++||++ ||++|.+
T Consensus 81 ~r~~~lG~L~~G~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~v~~aI~~~~~~~~~~ 160 (175)
T 2ja9_A 81 GRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTA 160 (175)
T ss_dssp CSCTTCEEECSCEEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETTTEEEEECSSHHHHHHHHHHHHHHHHHCCGG
T ss_pred ccccCCcCcCCCEEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECCcEEEEecCCHHHHHHHHHHHHHHhccCCHH
Confidence 899999999999999999999999999888889999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhc
Q 026458 225 QQKIMVDKLLQRI 237 (238)
Q Consensus 225 ~~~~~~~~~~~~~ 237 (238)
|+++|++++++++
T Consensus 161 ~~~~~~~~~~~~~ 173 (175)
T 2ja9_A 161 AFKDIAKRQFKEI 173 (175)
T ss_dssp GHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 5
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=100.00 E-value=1.5e-52 Score=368.24 Aligned_cols=212 Identities=21% Similarity=0.339 Sum_probs=176.5
Q ss_pred CCcEEecCCccCCCCCCCCCceeecC--cEEEeCCEEEEEEeeEeEEecCCeEEEEccCC-ccCCCCCCEEEEEEEEecC
Q 026458 11 VDKIVVPGDVVLDLSSMTNQTIKLGG--GLRQECDSVSVIKAGKLRFSKPNKYWVESSQK-RYVPCVEDTVLGIVVDCKA 87 (238)
Q Consensus 11 ~~~iV~PGd~l~~~~~~~~~~~~~G~--G~y~~~g~i~as~~G~v~~~~~~~i~V~~~~~-~Y~P~vGDiVIG~V~~v~~ 87 (238)
.+++|+|||.|+.. +|.+|+ |||.++++|+|+++|.+..+ ++.++|.|+++ +|.|++||+|+|+|+++.+
T Consensus 15 ~~~iV~PGd~l~~~------~~~~G~~~Gty~~~g~i~as~~G~v~~~-~~~v~V~p~~~~~y~p~~GDiV~G~V~~v~~ 87 (251)
T 2je6_I 15 PRSIVVPGELLAEG------EFQIPWSPYILKINSKYYSTVVGLFDVK-DTQFEVIPLEGSFYYPKINDIVIGLVEDVEI 87 (251)
T ss_dssp SSCEECTTCEEEEE------CCCCCCCTTEEEETTEEEECSSEEEEEE-TTEEEEEESCCSCCCCCTTCEEEEEEEEECS
T ss_pred CCcEEcCCCCCccC------CeeeCCCCCEEEECCEEEEEEEEEEEEe-CCEEEEEECCCcccCCCCCCEEEEEEEEEeC
Confidence 47899999999852 699999 99999999999999999986 67899999987 9999999999999999999
Q ss_pred ceEEEEecCCeeeeecCcccCCc-c---cccccCcCCCCEEEEEEEecCCCCcceEEEecCCCccCCCcccCCeeEEEec
Q 026458 88 DNFFVDIRGPTIAFLPVLAFEGG-T---RRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETS 163 (238)
Q Consensus 88 ~~~~VdI~~~~~a~L~~~~f~ga-t---k~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~~~~V~ 163 (238)
+.|+|||++++.|+||.++|.+. . ++++.+|++||+|+|||+++++++.+.|||++ .+||+|.+|++++++
T Consensus 88 ~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~-----~~lG~L~~G~v~~vs 162 (251)
T 2je6_I 88 YGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKG-----KDLGRVSNGIVIDIM 162 (251)
T ss_dssp SEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCS-----TTCEECCSSCEEECC
T ss_pred ceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcc-----ccCCcccCCEEEEEC
Confidence 99999999999999999998753 2 66788999999999999999988899999987 899999999999999
Q ss_pred hhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc------CCHHHHHHHHHHHHhh
Q 026458 164 TGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES------LSAVQQKIMVDKLLQR 236 (238)
Q Consensus 164 ~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~------lt~~~~~~~~~~~~~~ 236 (238)
|.++||+++++++ ||++|++.++||||||+||||||++.++++++++++||+++|+ +| +++++|+++.++.
T Consensus 163 ~~~v~rl~~~~~~-~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~~~~aI~~~e~~~~~~~l~-~~v~~~l~~~~~~ 239 (251)
T 2je6_I 163 PVKVPRVIGKNKS-MYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLT-DRIKQFIEEKLGE 239 (251)
T ss_dssp GGGHHHHHCGGGH-HHHHHHTTC---CEECTTSEEEC-----CTTCCTHHHHTTTTTTTTCC-----------------
T ss_pred HHHhHHHhcCcch-HHHHhcccCCeEEEEECCcEEEEeCCCHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhhh
Confidence 9999999987665 9999999999999999999999999999999999999999987 55 7888887766543
No 6
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=2.9e-45 Score=329.84 Aligned_cols=178 Identities=19% Similarity=0.291 Sum_probs=154.1
Q ss_pred CCCCcEEecCCccCCCCCCCCCceeecCcEEEeCCEEEEEEeeEeEEecCCeEEEEccCCccCCCCCCEEEEEEEEecCc
Q 026458 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKAD 88 (238)
Q Consensus 9 ~~~~~iV~PGd~l~~~~~~~~~~~~~G~G~y~~~g~i~as~~G~v~~~~~~~i~V~~~~~~Y~P~vGDiVIG~V~~v~~~ 88 (238)
+-.+++|+|||.|+..+ +|.+|+|||.++|+|+|+++|.++.. ++.+||+|.+++|.|++||+|+|+|+++.++
T Consensus 36 ~~~~~iVlPGd~L~~~~-----~~~~G~Gty~~~g~I~Asv~G~v~~~-~~~vsV~p~~~rY~P~vGDvViG~Vt~V~~~ 109 (308)
T 2nn6_H 36 DTKKHLVVPGDTITTDT-----GFMRGHGTYMGEEKLIASVAGSVERV-NKLICVKALKTRYIGEVGDIVVGRITEVQQK 109 (308)
T ss_dssp ----CBCCTTCBCCCCT-----TCCBCTTEEECSSSEEECSSEEEEEE-TTEEEEEESSCCCCCCSSBCCCEEEEEEETT
T ss_pred CCCCcEEeCCCCCCCCC-----CEeecCCeEEECCEEEEEEEEEEEec-CCEEEEeeCCCccCCCCCCEEEEEEEEEeCc
Confidence 34568999999999765 79999999999999999999999875 7899999999999999999999999999999
Q ss_pred eEEEEecCCeeeeecCcc--cCCccc---------ccccCcCCCCEEEEEEEecCCCCcceEEEecCCCccCCCcccCCe
Q 026458 89 NFFVDIRGPTIAFLPVLA--FEGGTR---------RNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDG 157 (238)
Q Consensus 89 ~~~VdI~~~~~a~L~~~~--f~gatk---------~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G 157 (238)
+|+|||++++.+.++.++ |+++++ +++++|++||+|+|||+++++++++.|||++ ++||+|++|
T Consensus 110 ~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LStr~-----~~LGkL~~G 184 (308)
T 2nn6_H 110 RWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRS-----LKYGKLGQG 184 (308)
T ss_dssp EEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEEECCS-----STTCEECSS
T ss_pred eEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEEEecC-----cCCcccCCe
Confidence 999999999999888765 566543 5678999999999999999988999999987 899999999
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCC
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAES 204 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~ 204 (238)
+++.|++.++|++.. ++..+ .++|||++|+||||||++..
T Consensus 185 ~v~~vs~~lv~r~~~-----~l~~l--~~g~eI~vG~NG~IWi~~~~ 224 (308)
T 2nn6_H 185 VLVQVSPSLVKRQKT-----HFHDL--PCGASVILGNNGFIWIYPTP 224 (308)
T ss_dssp CEEECCTTSCCCSTT-----CSCCC--BTTBEEEEETTTEEEEECCC
T ss_pred EEEEEChhheechhh-----eEecC--CCCcEEEEeCCCEEEEcCCc
Confidence 999999999998752 45555 48999999999999999864
No 7
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.96 E-value=6.6e-29 Score=207.87 Aligned_cols=135 Identities=25% Similarity=0.291 Sum_probs=121.2
Q ss_pred cEEecCCccCCCCCCCCCceeecCcEEEeCCEEEEEEeeEeEEecCCeEEEEccCC-ccCCCCCCEEEEEEEEecCceEE
Q 026458 13 KIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQK-RYVPCVEDTVLGIVVDCKADNFF 91 (238)
Q Consensus 13 ~iV~PGd~l~~~~~~~~~~~~~G~G~y~~~g~i~as~~G~v~~~~~~~i~V~~~~~-~Y~P~vGDiVIG~V~~v~~~~~~ 91 (238)
++|+|||.|+..+ +|.+|+|||.++|+|+|+++|.++.. ++.+||+|.+. +|.|+ ||+|+|+|+++.+..|+
T Consensus 2 ~iV~PGd~l~~~~-----~~~~G~Gty~~~~~i~as~~G~v~~~-~~~v~V~~~~~~~y~p~-GdiV~G~V~~V~~~ga~ 74 (179)
T 3m7n_A 2 RFVMPGDRIGSAE-----EYVKGEGVYEEGGELFAAVAGKLIIK-DRVAKVESISPIPEIVK-GDVVLGRVVDLRNSIAL 74 (179)
T ss_dssp CEECTTCEEEETT-----TSEECTTEEEETTEEEESSSEEEEEE-TTEEEEEESSCCCCCCT-TCEEEEEEEEECSSEEE
T ss_pred eEEcCCCCCCCCC-----CEeccCCEEEeCCEEEEEEEEEEEEe-CCEEEEEECCCCcccCC-CCEEEEEEEEEeCCcEE
Confidence 6999999999876 79999999999999999999999985 88999999855 69999 99999999999999999
Q ss_pred EEecC----------CeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCCCCcceEEEecCCCccCCCcccC-----
Q 026458 92 VDIRG----------PTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLK----- 155 (238)
Q Consensus 92 VdI~~----------~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~----- 155 (238)
|||.+ ++.|+||.+++.. ..+++++.|++||+|.|+|++ +.+.||+++ .+||+|.
T Consensus 75 V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~LS~k~-----~~lGvv~a~~~~ 145 (179)
T 3m7n_A 75 IEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLRLSTKE-----EEMGVLRALCSN 145 (179)
T ss_dssp EEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTEEECCS-----TTCEEEECBCTT
T ss_pred EEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEEEEEec-----CCCCEEEecccc
Confidence 99998 8999999999864 356889999999999999998 679999988 8999983
Q ss_pred -CeeEEEec
Q 026458 156 -DGYMFETS 163 (238)
Q Consensus 156 -~G~~~~V~ 163 (238)
+..|++++
T Consensus 146 ~g~~m~~~~ 154 (179)
T 3m7n_A 146 CKTEMVREG 154 (179)
T ss_dssp TCCBCEECS
T ss_pred cCCceEECC
Confidence 45566655
No 8
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.94 E-value=7.4e-28 Score=206.08 Aligned_cols=148 Identities=17% Similarity=0.099 Sum_probs=120.3
Q ss_pred CCCCcEEecCCccCCCCCCCCCceeecCcEEEeCCEEEEEEeeEeEEec----CCeEEEEccCC-ccCCCCCCEEEEEEE
Q 026458 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSK----PNKYWVESSQK-RYVPCVEDTVLGIVV 83 (238)
Q Consensus 9 ~~~~~iV~PGd~l~~~~~~~~~~~~~G~G~y~~~g~i~as~~G~v~~~~----~~~i~V~~~~~-~Y~P~vGDiVIG~V~ 83 (238)
...+++|+|||.|+..+ +|.+|+|||+++|+|||+++|.+..++ .++++|.|.++ +|.|++||+|+|+|+
T Consensus 16 ~~~~~iV~PGd~l~~~~-----~~~~G~Gty~~~g~I~Asv~G~v~~~~~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~ 90 (209)
T 2nn6_I 16 APPVRYCIPGERLCNLE-----EGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETESQLLPDVGAIVTCKVS 90 (209)
T ss_dssp ----CCCCTTCEEEETT-----TCCCSSSCEEETTEEECCSCSCBCCCBCTTSSBC-CBCCSCCCCCCCCTTCEEEEEEE
T ss_pred cCCCcEEcCCCCCCCCC-----CeeecCCEEEECCEEEEEEEEEEEEeccCCcccEEEEecCCCCcCCCCCCCEEEEEEE
Confidence 44578999999999765 799999999999999999999997642 24688999876 599999999999999
Q ss_pred EecCceEEEEecC--------CeeeeecCcccCC-ccc--ccccCcCCCCEEEEEEEecCCCC-cceEEEecCCCccCCC
Q 026458 84 DCKADNFFVDIRG--------PTIAFLPVLAFEG-GTR--RNIPKFEIGSLLYVRVVKANPGM-NPELSCTDASGKAAEF 151 (238)
Q Consensus 84 ~v~~~~~~VdI~~--------~~~a~L~~~~f~g-atk--~~r~~l~~GDlV~ArV~~~~~~~-~~~Ls~~~~~~~~~~~ 151 (238)
++.+..|+|||.+ .+.|+||.+++.. ..+ +++.+|++||+|+|+|+++++.. .+.||++. .+|
T Consensus 91 ~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~k~-----~~l 165 (209)
T 2nn6_I 91 SINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAE-----NEL 165 (209)
T ss_dssp EECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEECCS-----SSC
T ss_pred EEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEEec-----CCC
Confidence 9999999999963 5678888776642 233 68889999999999999998765 49999988 899
Q ss_pred cccC-----CeeEEEechhh
Q 026458 152 GLLK-----DGYMFETSTGL 166 (238)
Q Consensus 152 G~L~-----~G~~~~V~~~~ 166 (238)
|++. +..|++++...
T Consensus 166 GVv~A~c~~g~~m~~~~~~~ 185 (209)
T 2nn6_I 166 GVVVAHSESGIQMVPISWCE 185 (209)
T ss_dssp EECCCBCSSSCBCEEEETTE
T ss_pred cEEEEEcCCCCEEEEccCCE
Confidence 9993 56677777543
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.72 E-value=8.3e-08 Score=69.22 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEecCCC-CcceEEEec
Q 026458 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG-MNPELSCTD 143 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 143 (238)
.|++||+|.|+|+++.+..++|+|+....|.+|.+++.... . ..|++||.|.|+|.+++.+ +.+.||.+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~--~-~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLR--L-ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCC--G-GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCccc--c-eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 37899999999999999999999998999999998875321 1 5799999999999999876 788899875
No 10
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.60 E-value=1.9e-07 Score=71.93 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=66.6
Q ss_pred eEEEEccCC-ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCC--cccccccCcCCCCEEEEEEEecCC-CC
Q 026458 60 KYWVESSQK-RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG--GTRRNIPKFEIGSLLYVRVVKANP-GM 135 (238)
Q Consensus 60 ~i~V~~~~~-~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g--atk~~r~~l~~GDlV~ArV~~~~~-~~ 135 (238)
.+.+.|... .+.|++||+|.|+|+++.+..++|+|.....|.+|.+++.. ..++.+..|++||.|.++|.+++. .+
T Consensus 15 ~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~ 94 (115)
T 2khi_A 15 VPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 94 (115)
T ss_dssp ------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTT
T ss_pred hcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCC
Confidence 445666544 57899999999999999999999999988999999988753 345566789999999999999986 46
Q ss_pred cceEEEec
Q 026458 136 NPELSCTD 143 (238)
Q Consensus 136 ~~~Ls~~~ 143 (238)
.+.||++.
T Consensus 95 rI~lslk~ 102 (115)
T 2khi_A 95 RISLGLKQ 102 (115)
T ss_dssp EEEECCCC
T ss_pred EEEEEEEe
Confidence 78888765
No 11
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.56 E-value=1.7e-07 Score=71.41 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=63.9
Q ss_pred cCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCCCC-cceEEEec
Q 026458 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANPGM-NPELSCTD 143 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~~~-~~~Ls~~~ 143 (238)
..+++||+|.|+|+++.+..++|+|+....|.||.+++.. ..++.+..|++||.|.|+|.+++... .+.||++.
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~ 102 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRA 102 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTS
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 5789999999999999999999999988999999988753 34556678999999999999998764 68888765
No 12
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.55 E-value=2.6e-07 Score=72.84 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=64.3
Q ss_pred CCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccC-CcccccccCcCCCCEEEEEEEecCC-CCcceEEEec
Q 026458 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE-GGTRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTD 143 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 143 (238)
.+++||+|.|+|+++..-.++|+|.....|.+|.+++. +...+.+..|++||.|.++|.+++. .+.+.||++.
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~ 78 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRA 78 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHH
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEee
Confidence 37899999999999999999999998999999998875 3455667789999999999999987 6789999875
No 13
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=3.9e-07 Score=68.86 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=62.4
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecC---CeeeeecCcccC-C-cccccccCcCCCCEEEEEEEecCCCCcceEEEec
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRG---PTIAFLPVLAFE-G-GTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTD 143 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~---~~~a~L~~~~f~-g-atk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 143 (238)
...|++||++.|+|+++..-.++|+|.. ...|.+|.+++. . ..++.+..|++||.|.++|.+++. ..+.||++.
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~LSlk~ 85 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLSMKD 85 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEEESTT
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEEEEee
Confidence 3568999999999999999999999996 789999999883 2 234455679999999999999986 577888765
No 14
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2.4e-07 Score=71.96 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=62.6
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecC-CeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCCC---CcceEEEec
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANPG---MNPELSCTD 143 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~~---~~~~Ls~~~ 143 (238)
.+.|++||+|.|+|+++....++|+|.. ...|.||++++.. ..++....|++||.|.++|.+++.. +.+.||++.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 4789999999999999999999999965 3799999988753 3445566799999999999999753 468888876
No 15
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.38 E-value=8.8e-07 Score=73.79 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=56.9
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEe--cCCeeeeecCcccC-CcccccccCcCCCCEEEEEEEecCCC-CcceEEEec
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDI--RGPTIAFLPVLAFE-GGTRRNIPKFEIGSLLYVRVVKANPG-MNPELSCTD 143 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI--~~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 143 (238)
.+.|++||+|.|+|+++.+-.++|+| .....|.+|++++. +..++.+..|++||.|.++|.+++.. +.+.||++.
T Consensus 10 ~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~ 88 (182)
T 1kl9_A 10 HKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 88 (182)
T ss_dssp SSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred ccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 34589999999999999999999999 46789999999885 34566778899999999999999864 568888765
No 16
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.37 E-value=9.7e-07 Score=73.23 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=66.0
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCC-cc-----------cccccCcCCCCEEEEEEEecCCC--
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-GT-----------RRNIPKFEIGSLLYVRVVKANPG-- 134 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-at-----------k~~r~~l~~GDlV~ArV~~~~~~-- 134 (238)
.|.|.+|+++.|+|+++....++|+|+. ..|.+|.++... .. ++.+..|++||.|.+||.+++..
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 3789999999999999999999999975 899999887642 21 24567899999999999999763
Q ss_pred ----CcceEEEecCCCccCCCccc
Q 026458 135 ----MNPELSCTDASGKAAEFGLL 154 (238)
Q Consensus 135 ----~~~~Ls~~~~~~~~~~~G~L 154 (238)
+.+.||+++ .+||.+
T Consensus 155 ~p~~~~I~lS~k~-----~~LG~~ 173 (187)
T 1go3_E 155 RKRGSKIALTMRQ-----PYLGKL 173 (187)
T ss_dssp ----CEEEEECCS-----TTCEEH
T ss_pred CCCccEEEEEEcC-----CCCCcH
Confidence 367788877 788876
No 17
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.36 E-value=1.4e-06 Score=72.13 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=59.9
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEec--CCeeeeecCcccC-CcccccccCcCCCCEEEEEEEecCCC-CcceEEEec
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIR--GPTIAFLPVLAFE-GGTRRNIPKFEIGSLLYVRVVKANPG-MNPELSCTD 143 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~-gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 143 (238)
.+.|++||+|.|+|+++.+-.++|+|. ....|.+|++++. +..++.+..|++||.|.++|.+++.. +.+.||++.
T Consensus 10 ~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~ 88 (175)
T 2a19_A 10 NKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRR 88 (175)
T ss_dssp SSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTT
T ss_pred hcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEe
Confidence 356899999999999999999999994 6689999999875 34566778899999999999999764 568888865
No 18
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.29 E-value=2.2e-06 Score=75.68 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=65.1
Q ss_pred cCCccCCCCCCEEEEEEEEecCceEEEEec--CCeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCC-CCcceEEE
Q 026458 66 SQKRYVPCVEDTVLGIVVDCKADNFFVDIR--GPTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANP-GMNPELSC 141 (238)
Q Consensus 66 ~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~ 141 (238)
....+.|++||+|.|+|+++.+-.++|+|. ....|.+|.+++.. .....+..|++||.|.++|.+++. .+.+.||+
T Consensus 3 ~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSl 82 (275)
T 3aev_A 3 RKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSL 82 (275)
T ss_dssp ----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEES
T ss_pred cccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEE
Confidence 344577999999999999999999999998 47899999998753 355566789999999999999986 57788998
Q ss_pred ecC
Q 026458 142 TDA 144 (238)
Q Consensus 142 ~~~ 144 (238)
+..
T Consensus 83 k~~ 85 (275)
T 3aev_A 83 RRV 85 (275)
T ss_dssp TTC
T ss_pred eec
Confidence 763
No 19
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.15 E-value=4.5e-06 Score=64.44 Aligned_cols=74 Identities=24% Similarity=0.234 Sum_probs=57.4
Q ss_pred cCCCCCCEEEEEEEEecCceEEEEec-CCeeeeecCcccCCc--ccccccCcCCCCEEEEEEEecCCC-CcceEEEec
Q 026458 70 YVPCVEDTVLGIVVDCKADNFFVDIR-GPTIAFLPVLAFEGG--TRRNIPKFEIGSLLYVRVVKANPG-MNPELSCTD 143 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~~~~~VdI~-~~~~a~L~~~~f~ga--tk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls~~~ 143 (238)
..+++||+|.|+|+++..-.++|||+ ....++++....... ..+.+..|++||.|.++|.+++.. ..+.||++.
T Consensus 17 ~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~ 94 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred hcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEch
Confidence 35799999999999999999999998 345566664432111 123457899999999999999865 678899887
No 20
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.12 E-value=1.1e-05 Score=66.51 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=65.7
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc------------ccccccCcCCCCEEEEEEEecCCC--
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG------------TRRNIPKFEIGSLLYVRVVKANPG-- 134 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga------------tk~~r~~l~~GDlV~ArV~~~~~~-- 134 (238)
.+.|.+|+++-|+|++++...++|+++ +..+.+|.++.... .++....|++||-|+.||.+++.+
T Consensus 76 v~~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 76 TYVPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC---
T ss_pred eeeccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCC
Confidence 478999999999999999999999997 58899998876532 145666899999999999999743
Q ss_pred ---CcceEEEecCCCccCCCccc
Q 026458 135 ---MNPELSCTDASGKAAEFGLL 154 (238)
Q Consensus 135 ---~~~~Ls~~~~~~~~~~~G~L 154 (238)
..+.||++. ++||.+
T Consensus 155 ~~~~rI~ls~k~-----~gLG~~ 172 (180)
T 4ayb_E 155 GRLPRIALTMRQ-----PYLGKL 172 (180)
T ss_dssp ----CEEEECCS-----TTCEEH
T ss_pred cccCcEEEEcCC-----CCCCCC
Confidence 356788877 788876
No 21
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.12 E-value=4.6e-06 Score=61.34 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEEEEecCceEEEEecC--CeeeeecCc-ccCC-cccccccCcCCCCEEEEEEEecCC-CCcceEEEec
Q 026458 71 VPCVEDTVLGIVVDCKADNFFVDIRG--PTIAFLPVL-AFEG-GTRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTD 143 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~~~~VdI~~--~~~a~L~~~-~f~g-atk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 143 (238)
.|++|+++-|+|+ +.+-.++|+|.. ...|.+|++ +... ..+..+..| +||.|.++|.+++. .+.+.||++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 4899999999999 999999999974 479999999 8753 234455667 99999999999986 4678898875
No 22
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.10 E-value=4.3e-06 Score=73.44 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=66.1
Q ss_pred CccCCCCCCEEEEEEEEecCceEEEEec--CCeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCC-CCcceEEEec
Q 026458 68 KRYVPCVEDTVLGIVVDCKADNFFVDIR--GPTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTD 143 (238)
Q Consensus 68 ~~Y~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 143 (238)
..+.|++||+|.|+|+++.+..++|+|. ....|.+|.+++.. ..++.+..|++||.|.++|.+++. .+.+.||++.
T Consensus 5 ~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 5 RSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SSSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 4578999999999999999999999997 67899999998853 345556779999999999999986 5778999876
Q ss_pred C
Q 026458 144 A 144 (238)
Q Consensus 144 ~ 144 (238)
.
T Consensus 85 ~ 85 (266)
T 3cw2_C 85 V 85 (266)
T ss_dssp S
T ss_pred c
Confidence 3
No 23
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.08 E-value=9.1e-06 Score=72.82 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEEEEecCceEEEEec--CCeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCC-CCcceEEEecC
Q 026458 71 VPCVEDTVLGIVVDCKADNFFVDIR--GPTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTDA 144 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~~~~VdI~--~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~~ 144 (238)
.|++||+|.|+|+++.+-.++|+|. ....|.+|.+.+.. ..++.+..|++||.|.++|.+++. .+.+.||.+..
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 5789999999999999999999998 67899999998853 356677889999999999999987 46788998763
No 24
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.06 E-value=1e-05 Score=66.24 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=62.1
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc-----cc--------ccccCcCCCCEEEEEEEecCCCC
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG-----TR--------RNIPKFEIGSLLYVRVVKANPGM 135 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga-----tk--------~~r~~l~~GDlV~ArV~~~~~~~ 135 (238)
.+.|.+|+++.|+|++++.-.++|+|+ +..|.+|.+..+.. .. +.+..|++||.|..||.+++.+.
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 467999999999999999999999996 66799999876532 11 22557999999999999987543
Q ss_pred c---ceEEEecCCCccCCCccc
Q 026458 136 N---PELSCTDASGKAAEFGLL 154 (238)
Q Consensus 136 ~---~~Ls~~~~~~~~~~~G~L 154 (238)
. ..-|+++ ++||++
T Consensus 155 ~~~~~igsm~~-----~~LG~~ 171 (172)
T 2c35_B 155 NDIFAIGSLMD-----DYLGLV 171 (172)
T ss_dssp TEEEEEEECCS-----TTCEEC
T ss_pred CCcEEEEEecC-----CCCCCC
Confidence 2 2234444 788876
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.60 E-value=0.00017 Score=58.98 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=60.3
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc-c---ccc-------ccCcCCCCEEEEEEEecCCCCcc
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG-T---RRN-------IPKFEIGSLLYVRVVKANPGMNP 137 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga-t---k~~-------r~~l~~GDlV~ArV~~~~~~~~~ 137 (238)
.+.|.+|+++-|+|++++.-.++|+|+. .+|.+|.+..+.. . .++ +..|++||.|..||.+++.+..
T Consensus 78 ~~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~- 155 (171)
T 1y14_B 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS- 155 (171)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT-
T ss_pred EccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC-
Confidence 3569999999999999999999999987 9999999877532 1 111 2569999999999999875432
Q ss_pred eEEEecCCCccCCCccc
Q 026458 138 ELSCTDASGKAAEFGLL 154 (238)
Q Consensus 138 ~Ls~~~~~~~~~~~G~L 154 (238)
..+..+ +=+.++||.+
T Consensus 156 ~~~~ig-sm~~~~LG~~ 171 (171)
T 1y14_B 156 SIHAIG-SIKEDYLGAI 171 (171)
T ss_dssp EEEEEE-ECCSTTCEEC
T ss_pred CcEEEE-EcCCCCCCCC
Confidence 112222 1133788764
No 26
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.59 E-value=3.8e-05 Score=63.01 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=62.1
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc-----------ccccccCcCCCCEEEEEEEecCCCCcc
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG-----------TRRNIPKFEIGSLLYVRVVKANPGMNP 137 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga-----------tk~~r~~l~~GDlV~ArV~~~~~~~~~ 137 (238)
.+.|.+|+++-|+|++++.-.++|+++ +.++.+|.++.+.. -++....+++||.|++||.+++.+..
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~- 156 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDAT- 156 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSS-
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCC-
Confidence 478999999999999999999999997 46699998876432 12334579999999999999875431
Q ss_pred eEEEecCCCccCCCccc
Q 026458 138 ELSCTDASGKAAEFGLL 154 (238)
Q Consensus 138 ~Ls~~~~~~~~~~~G~L 154 (238)
...+.. +=+.++||+|
T Consensus 157 ~~~~Ig-tm~~~~LG~~ 172 (172)
T 3h0g_G 157 EIFAIA-TMKEDYLGVL 172 (172)
T ss_dssp CEEEEE-ECCSTTCEEC
T ss_pred CceEEE-EcCCCCCCCC
Confidence 122332 2244888876
No 27
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.50 E-value=0.00013 Score=54.35 Aligned_cols=60 Identities=7% Similarity=0.093 Sum_probs=49.8
Q ss_pred eeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC-------eEEEecCChhHHHHHHHHHHHh
Q 026458 157 GYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG-------RVWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 157 G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG-------~IWi~~~~~~~~~~i~~~i~~~ 218 (238)
=..+.||+.++++++|+.++ +++.|.+.+++.|-+..+| .|||.+. .+....+...|..+
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~-~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~i 84 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGA-VITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRI 84 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSC-HHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHH
T ss_pred eEEEEECHHHhhhcCCCCch-hHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHH
Confidence 34689999999999999998 9999999999999999999 9999985 66555555444443
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=97.47 E-value=0.00017 Score=52.19 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=51.6
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCe--------EEEecCChhHHHHHHHHHHHh
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGR--------VWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~--------IWi~~~~~~~~~~i~~~i~~~ 218 (238)
..+.||+.++.+++|+.++ .++.|.+.+++.|-+..+|. |||.+ +++.+..+...|+.+
T Consensus 16 ~~i~Ip~~~ig~IIGkgG~-~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 16 QEIMIPAGKAGLVIGKGGE-TIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEECTTTHHHHHTTTTH-HHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEeChhheeeeECCCCH-HHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 3688999999999999998 99999999999999999998 99999 887776666666543
No 29
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=97.41 E-value=0.00024 Score=49.78 Aligned_cols=56 Identities=9% Similarity=0.227 Sum_probs=46.9
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC----eEEEecCChhHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG----RVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG----~IWi~~~~~~~~~~i~~~i 215 (238)
..+.||+.++++++|+.+. .++.|.+++++.|-+..+| .|||.+. .+....+...|
T Consensus 7 ~~i~I~~~~ig~iIG~gG~-~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I 66 (71)
T 1vig_A 7 VEINIDHKFHRHLIGKSGA-NINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKREL 66 (71)
T ss_dssp EEEEECSSHHHHHTCSSCC-HHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHH
T ss_pred EEEEECHHHhhhhcCCCCc-cHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHH
Confidence 3589999999999999998 9999999999999999999 9999996 54444333333
No 30
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=97.37 E-value=0.0003 Score=59.87 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=61.7
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc-c---ccc-------ccCcCCCCEEEEEEEecCCCCcc
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG-T---RRN-------IPKFEIGSLLYVRVVKANPGMNP 137 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga-t---k~~-------r~~l~~GDlV~ArV~~~~~~~~~ 137 (238)
.+.|.+|+++-|+|+++..-.++|+|+. .+|.+|.+..+.. . ... +..|++||.|..||.+++.+..
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~- 155 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS- 155 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETT-
T ss_pred eeccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCC-
Confidence 4679999999999999999999999987 9999999877532 0 111 2569999999999999875432
Q ss_pred eEEEecCCCccCCCcccC
Q 026458 138 ELSCTDASGKAAEFGLLK 155 (238)
Q Consensus 138 ~Ls~~~~~~~~~~~G~L~ 155 (238)
.+.... +=+.+++|.+.
T Consensus 156 ~i~~Ig-Smk~~~LG~~~ 172 (215)
T 2b8k_G 156 SIHAIG-SIKEDYLGAIS 172 (215)
T ss_dssp EEEEEE-ECCSTTCEEC-
T ss_pred ccEEEE-EcCCCCCCCcc
Confidence 112222 12347888884
No 31
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.35 E-value=0.00037 Score=58.64 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=50.7
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccC-Cc-------------c------cccccCcCCCCEEEEEE
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE-GG-------------T------RRNIPKFEIGSLLYVRV 128 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~-ga-------------t------k~~r~~l~~GDlV~ArV 128 (238)
.+.|.+|.++.|+|++++....+|+++ +.+++++.+... .. . ++.+..++.||.|+.||
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 467999999999999999999999995 667777665442 11 0 34456799999999999
Q ss_pred EecCC
Q 026458 129 VKANP 133 (238)
Q Consensus 129 ~~~~~ 133 (238)
.+++-
T Consensus 155 ~~v~~ 159 (203)
T 3ayh_B 155 ESEDF 159 (203)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98753
No 32
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.33 E-value=0.00058 Score=60.39 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCCCCEEEEEEEEecCceEEE-EecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEecCC-CCcceEEEec
Q 026458 72 PCVEDTVLGIVVDCKADNFFV-DIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTD 143 (238)
Q Consensus 72 P~vGDiVIG~V~~v~~~~~~V-dI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 143 (238)
-.+||.|-|+|+++..-.++| +|+..+.|.+|.++.. ..|++||-|.|+|..+++ ++.+.||++.
T Consensus 150 ~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~-------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~ 216 (285)
T 3go5_A 150 NMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY-------AEPRLGQVLDARVIGFREVDRTLNLSLKP 216 (285)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS-------SCCCTTCEEEEEEEEEETTTTEEEEECSC
T ss_pred CCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc-------ccCCCCCEEEEEEEEEECCCCeEEEEeCh
Confidence 357999999999999999999 9999999999998764 369999999999999988 7889999876
No 33
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.32 E-value=0.00056 Score=59.42 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=51.2
Q ss_pred ccCCCCCCEEEEEEEE----ecCceEEEEecC---CeeeeecCcccCCcccccccCcCCCCEEEEEEEecCCC
Q 026458 69 RYVPCVEDTVLGIVVD----CKADNFFVDIRG---PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG 134 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~----v~~~~~~VdI~~---~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~ 134 (238)
.|..++||+|.|+|.+ +..+.+.|||+. ...|+||....- .+..|++||-|.|-|..+.+.
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi-----p~E~~~~GDrIkayV~~V~~~ 69 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-----PGESYEHGNRLRCYVVGVTRG 69 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC-----TTCCCCTTCEEEEEEEEEECC
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC-----CCccCCCCCEEEEEEEEEEcC
Confidence 4888999999999999 899999999986 489999976542 346899999999999998764
No 34
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.27 E-value=0.00026 Score=53.48 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=57.9
Q ss_pred eeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC----eEEEecCChhHHHHHHHHHHHhccCCHHHHHHHHHH
Q 026458 157 GYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG----RVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDK 232 (238)
Q Consensus 157 G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG----~IWi~~~~~~~~~~i~~~i~~~e~lt~~~~~~~~~~ 232 (238)
-..+.||+.++++++|+.+. .++.|.+.+++.|-+..+| .|||.+. ++ .+.+|...++.+..+.-....++
T Consensus 18 ~~~i~Ip~~~ig~IIG~gG~-~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e---~v~~A~~~I~~i~~e~e~~~~d~ 92 (104)
T 2ctk_A 18 TIEVEVPFDLHRYVIGQKGS-GIRKMMDEFEVNIHVPAPELQSDIIAITGL-AA---NLDRAKAGLLERVKELQAEQEDR 92 (104)
T ss_dssp EEEEECCHHHHHHHHCSSSH-HHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHccceeCCCch-HHHHHHHHHCCEEEecCCCCCcceEEEEcC-HH---HHHHHHHHHHHHHhhHHHhHHHH
Confidence 45689999999999999998 9999999999999999999 9999985 43 35666666666654444444454
Q ss_pred HHhh
Q 026458 233 LLQR 236 (238)
Q Consensus 233 ~~~~ 236 (238)
.++.
T Consensus 93 ~~~~ 96 (104)
T 2ctk_A 93 ALRS 96 (104)
T ss_dssp HHCC
T ss_pred Hhcc
Confidence 5543
No 35
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.23 E-value=0.00088 Score=60.75 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=55.5
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEecCCCC-cceEEE
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGM-NPELSC 141 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~-~~~Ls~ 141 (238)
.|..+.||+|.|+|.++..+.+.||++ ...|+||.+.+. .+..|++||-|.|.|.++++.. .+.|..
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i-----p~E~~~vGD~Vkv~V~~V~~~~kg~~I~L 196 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWI-----PGEEIKAGDLVKVYIIDVVKTTKGPKILV 196 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSC-----TTCCCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcC-----CCcCCCCCCEEEEEEEEEEcCCCCcEEEE
Confidence 477889999999999999999999998 789999988763 2458999999999999987542 344443
No 36
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00066 Score=70.49 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc--ccccccCcCCCCEEEEEEEecCC-CCcceEEEecC
Q 026458 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG--TRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTDA 144 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga--tk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~~ 144 (238)
-..++|++|-|+|+++....++|+|.+...|.+|++++... .+..+..|++||.|.|+|++++. ...+.|||+.+
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 46789999999999999999999999888999999988654 35566789999999999999974 46789998763
No 37
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.19 E-value=5.5e-05 Score=74.75 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCCCCcceEEEec
Q 026458 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTD 143 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 143 (238)
..|++|+++.|+|+++..-.++|+|.....|.+|++++.. ...+....|++||.|.++|.++++.+.+.||.+.
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~ 707 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKV 707 (726)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEee
Confidence 3689999999999999999999999988999999998864 4556677899999999999999877788899876
No 38
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.02 E-value=0.00096 Score=49.19 Aligned_cols=59 Identities=7% Similarity=0.173 Sum_probs=51.4
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCe--------EEEecCChhHHHHHHHHHHHh
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGR--------VWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~--------IWi~~~~~~~~~~i~~~i~~~ 218 (238)
..+.||+.++.++||+.+. .++.|.+.+++.|-|..+|. |||.+ +++.+..+...|+.+
T Consensus 17 ~~i~Ip~~~vG~IIGkgG~-~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~ 83 (94)
T 1x4m_A 17 QEIMIPASKAGLVIGKGGE-TIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLEL 83 (94)
T ss_dssp EEEEECHHHHHHHSCSSSS-HHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHH
T ss_pred EEEEEChhhcceEECCCCH-HHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 4688999999999999998 99999999999999999987 99998 877777766666554
No 39
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.97 E-value=0.001 Score=49.31 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=47.4
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC-----eEEEecCChhHHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG-----RVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG-----~IWi~~~~~~~~~~i~~~i~ 216 (238)
..+.||+.++++++|+.+. .++.|.+.+++.|-+-.+| .|||.+. ++.+..+...|+
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~-~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~ 80 (95)
T 2ctm_A 19 EDVPLDHRVHARIIGARGK-AIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHIL 80 (95)
T ss_dssp EEEECCTTTHHHHHCSSSC-HHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHH
T ss_pred EEEEECHHHccccCCCCcc-hHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 4589999999999999998 9999999999999999999 8999985 555444444333
No 40
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.93 E-value=0.0021 Score=58.72 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=55.4
Q ss_pred ccCCCCCCEEEEEEEE----ecCceEEEEecC---CeeeeecCcccCCcccccccCcCCCCEEEEEEEecCCC-CcceEE
Q 026458 69 RYVPCVEDTVLGIVVD----CKADNFFVDIRG---PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPG-MNPELS 140 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~----v~~~~~~VdI~~---~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~-~~~~Ls 140 (238)
.|..++||+|.|+|.+ +....+.|||+. ...|+||....- .+..|++||-|.|-|.++.+. ..++|.
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi-----P~E~~~~GDrVkvyV~~V~~~~kgpqI~ 199 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-----PGESYEHGNRLRCYVVGVTRGAREPLIT 199 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC-----TTCCCCTTCEEEEEEEEEECCSSSCEEE
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC-----CCccCCCCCEEEEEEEEEecCCCccEEE
Confidence 4789999999999999 999999999987 489999986542 246899999999999999765 245555
Q ss_pred Ee
Q 026458 141 CT 142 (238)
Q Consensus 141 ~~ 142 (238)
+.
T Consensus 200 LS 201 (366)
T 1k0r_A 200 LS 201 (366)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 41
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.73 E-value=0.00069 Score=66.04 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=50.8
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhccCC
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLS 222 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~lt 222 (238)
..++|+|.+++.+||+.+. +++.|.++++++|-+..||+|||.+.|.+ .+..|+..++.++
T Consensus 569 ~~~~I~~~kI~~vIG~gG~-~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~---~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 569 ETVQVPLSKRAKFVGPGGY-NLKKLQAETGVTISQVDEETFSVFAPTPS---AMHEARDFITEIC 629 (630)
T ss_dssp EEEECCHHHHHHHHCGGGH-HHHHHHHHHCCEEEECSSSEEEEEESSHH---HHHHHHHHTTC--
T ss_pred EEEEeChhHhheeECCCCh-hHHHHHHHHCCEEEEcCCcEEEEEeCCHH---HHHHHHHHHHHHh
Confidence 4789999999999999887 99999999999999999999999998875 4455555555543
No 42
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.00033 Score=71.63 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc--ccccccCcCCCCEEEEEEEecCC-CCcceEEEec
Q 026458 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG--TRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTD 143 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga--tk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 143 (238)
-..++|++|-|+|+++..-.++|+|.+...|.+|++++... .++.+..|++||.|.|+|++++. ...+.||++.
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 35689999999999999999999998888999999988643 35556789999999999999984 4679999987
No 43
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=96.60 E-value=0.0019 Score=48.42 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=48.8
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEee--------CCeEEEecCChhHHHHHHHHHHHhccCC
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL--------NGRVWVNAESPSTVVLVSNAIMNSESLS 222 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~--------NG~IWi~~~~~~~~~~i~~~i~~~e~lt 222 (238)
..+.||+.++.++||+.+. .++.|.+.+++.|-|.. +|.|||.+ +.+. +.+|...++.+.
T Consensus 17 ~~i~Ip~~~ig~IIGkgG~-~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G-~~~~---v~~A~~~I~~~i 84 (104)
T 1we8_A 17 EQLSVPQRSVGRIIGRGGE-TIRSICKASGAKITCDKESEGTLLLSRLIKISG-TQKE---VAAAKHLILEKV 84 (104)
T ss_dssp EEEEEETTTHHHHHTTTSH-HHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEE-EHHH---HHHHHHHHHHHH
T ss_pred EEEEEChhheeeeECCCCH-HHHHHHHHHCCEEEEecCCCCCCCCcceEEEEc-CHHH---HHHHHHHHHHHH
Confidence 4689999999999999998 99999999999999997 79999998 4443 455555555543
No 44
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.54 E-value=0.00077 Score=67.21 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCC-CCcceEEEec
Q 026458 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANP-GMNPELSCTD 143 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~-~~~~~Ls~~~ 143 (238)
..++|++|-|+|+++..-.++|+|+...+|.+|++++.. ...+.+..|++||.|.++|.+++. ...+.||++.
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 478999999999999999999999888899999998753 233445679999999999999986 4678999876
No 45
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.52 E-value=0.0004 Score=68.66 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCC-cccccccCcCCCCEEEEEEEecCCCCcceEEEec
Q 026458 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-GTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTD 143 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-atk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 143 (238)
..|++|+++-|+|+++..-.++|+|.....|.+|++++.. ..++....|++||.|.+||.+++..+.+.||.+.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~ 697 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 697 (723)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEe
Confidence 4689999999999999999999999888999999998853 4556667899999999999999877788898875
No 46
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.40 E-value=0.00038 Score=69.12 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=37.4
Q ss_pred cCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCccc----C-CcccccccCcCCCCEEEEEEEecCCCCcceEEEec
Q 026458 70 YVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAF----E-GGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTD 143 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f----~-gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~ 143 (238)
..|++|+++-|+|+++..-.++|+|.....|.+|++++ . ...++....|++||.|.++|.+++..+.+.||++.
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEEEec
Confidence 56899999999999999999999998889999999998 4 34556677899999999999999877788899876
No 47
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=96.23 E-value=0.0071 Score=45.63 Aligned_cols=58 Identities=5% Similarity=0.085 Sum_probs=47.1
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC------eEEEecCChhHHHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG------RVWVNAESPSTVVLVSNAIMN 217 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG------~IWi~~~~~~~~~~i~~~i~~ 217 (238)
+.+.||+.++.++||+.++ .++.|.+.+++.|-|-.++ .|+|.+ +++.+..+.+.|+.
T Consensus 13 ~~i~Ip~~~iG~IIGkgG~-~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 13 IDVPVPRHSVGVVIGRSGE-MIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-PPDRCEHAARIIND 76 (106)
T ss_dssp EEEEEETTTHHHHHTTTTH-HHHHHHHHHTCEEEECSSCSSSSEEEEEEES-SHHHHHHHHHHHHH
T ss_pred EEEEECHHHcCccCCCCcH-HHHHHHHHHCcEEEEecCCCCCceeEEEEEe-CHHHHHHHHHHHHH
Confidence 4689999999999999998 9999999999999998766 799997 46555555444443
No 48
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.22 E-value=0.009 Score=44.07 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=54.7
Q ss_pred ccCCeeE--EEechhhhhhhcCCCCchhhHhhccccceE-EEEee-CCeEEEecCChhHHHHHHHHHHHhcc
Q 026458 153 LLKDGYM--FETSTGLSRMLLSSPTCPVLEELGKQLSFE-IAVGL-NGRVWVNAESPSTVVLVSNAIMNSES 220 (238)
Q Consensus 153 ~L~~G~~--~~V~~~~v~rl~~~~~~~~l~~l~~~~~~e-i~vG~-NG~IWi~~~~~~~~~~i~~~i~~~e~ 220 (238)
.+..+++ +.|+|.+++.++|+.+. .++.|.+.++.. |-+-- +|.|.|.+.+.+.+..+...|+.+|.
T Consensus 10 ~~~~~~i~~i~I~~dkIg~vIG~gGk-~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 10 QLAAAFHEEFVVREDLMGLAIGTHGS-NIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp SSSCSEEEEEECCHHHHHHHHTTTTH-HHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred hccCceEEEEEEChHHhhhhcCCCcH-HHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 3445543 77999999999999998 999999999997 99986 59999999888777666666666654
No 49
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.12 E-value=0.054 Score=51.57 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEEEEecCc--eEEEEecCCeeeeecCcccCCc----------ccccccCcCCCCEEEEEEEecCCC-Ccc
Q 026458 71 VPCVEDTVLGIVVDCKAD--NFFVDIRGPTIAFLPVLAFEGG----------TRRNIPKFEIGSLLYVRVVKANPG-MNP 137 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~--~~~VdI~~~~~a~L~~~~f~ga----------tk~~r~~l~~GDlV~ArV~~~~~~-~~~ 137 (238)
.+.+|++..|+|+++.+. .++|||+....|+||++..... ..+....+++||-|..+|...... .-+
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa 121 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 121 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCc
Confidence 467899999999999888 9999999999999999876311 123445699999999999996543 347
Q ss_pred eEEEe
Q 026458 138 ELSCT 142 (238)
Q Consensus 138 ~Ls~~ 142 (238)
.||+.
T Consensus 122 ~lTt~ 126 (517)
T 2bx2_L 122 ALTTF 126 (517)
T ss_dssp EEESS
T ss_pred eEEee
Confidence 77764
No 50
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=96.04 E-value=0.055 Score=47.65 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEecCCCCcceEEEecCC
Q 026458 72 PCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDAS 145 (238)
Q Consensus 72 P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~~~~~~Ls~~~~~ 145 (238)
..+|++|-|+|+++....+.||++ ...+.||.+..+. .+||-|.+.|.. +......+|+..|.
T Consensus 4 ~~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~~---------~vGdevev~v~~-d~~~r~iat~~~p~ 66 (285)
T 3go5_A 4 TNLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQH---------TVGDTVKGFAYT-DMKQKLRLTTLEVT 66 (285)
T ss_dssp TTTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCCC---------CTTSEEEEEEEE-CTTSCEEEECSCCC
T ss_pred ccCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCcc---------ccCCEEEEEEEE-CCCCCEEEeccccc
Confidence 357999999999999999999997 6799999988752 788988888874 55556777776653
No 51
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.06 Score=45.60 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=51.3
Q ss_pred ccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCC-------c-------c-cccccCcCCCCEEEEEEEecCC
Q 026458 69 RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEG-------G-------T-RRNIPKFEIGSLLYVRVVKANP 133 (238)
Q Consensus 69 ~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~g-------a-------t-k~~r~~l~~GDlV~ArV~~~~~ 133 (238)
.+.|.+|.++-|+|++++....+|++..+.+++++.+.... . . ++.+..|+.||.|+.||.+++.
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 46899999999999999999999999556777777665421 1 1 3446679999999999999864
No 52
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.25 E-value=0.02 Score=42.30 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=47.9
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhcccc-ceEEEEeeCC----eEEEecCChhHHHHHHHHHHHhccC
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQL-SFEIAVGLNG----RVWVNAESPSTVVLVSNAIMNSESL 221 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~-~~ei~vG~NG----~IWi~~~~~~~~~~i~~~i~~~e~l 221 (238)
..+.||+.+.+.++|+.+. .++.|.+++ ++.|-+-..| .|-|.+++. .+..|.+.++.+
T Consensus 19 ~~i~Ip~~~i~~iIG~gGk-~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~----~v~~A~~~I~~i 82 (95)
T 2ctj_A 19 VEVSIPAKLHNSLIGTKGR-LIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSS----DVEKAKKQLLHL 82 (95)
T ss_dssp EEEECCHHHHHHHHCSSSH-HHHHHHHHHTSCEEECCCTTTTCCEEEEESCHH----HHHHHHHHHHHH
T ss_pred EEEEECHHHHhhhCCCCch-hHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHH----HHHHHHHHHHHH
Confidence 3589999999999999988 999998999 9999999999 999999654 444444444443
No 53
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=95.16 E-value=0.045 Score=41.04 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=48.4
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeC---------CeEEEecCChhHHHHHHHHHHHh
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN---------GRVWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~~~~~~~~i~~~i~~~ 218 (238)
-+.|+..++.++||+.++ .++.|.+.+++.|-|-.+ +.|.|.+ +++.+..+...|..+
T Consensus 10 ~i~IP~~~vG~IIGkgG~-~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 10 TFSIPTHKCGLVIGRGGE-NVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEK 76 (107)
T ss_dssp EEEEEGGGTTTTSTTTTC-HHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHH
T ss_pred EEEECHHHcCccCCCCcH-HHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHH
Confidence 578999999999999998 899999999999999886 6888988 876666666555543
No 54
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=94.96 E-value=0.021 Score=45.29 Aligned_cols=57 Identities=5% Similarity=0.059 Sum_probs=47.1
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEee------CCeEEEecCChhHHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL------NGRVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~------NG~IWi~~~~~~~~~~i~~~i~ 216 (238)
+-+.||+.++.+++|+.+. .++.|.+.+++.|-+.. ++.|+|.+ +++.+..+...|.
T Consensus 93 ~~i~vp~~~~g~iIGk~G~-~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~ 155 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGE-MIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-PPDRCEHAARIIN 155 (164)
T ss_dssp BCCEEETTTHHHHHCSSSH-HHHHHHHHTCCEEEECCCCTTSSEEEEEEES-CHHHHHHHHHHHH
T ss_pred EEEEEChhhccccCCCCcH-hHHHHHHHHCCeEEEeCCCCCCCcEEEEEEc-CHHHHHHHHHHHH
Confidence 4578999999999999998 99999999999999987 68999998 4665555444443
No 55
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=94.92 E-value=0.042 Score=38.22 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=45.6
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeC---------CeEEEecCChhHHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN---------GRVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~~~~~~~~i~~~i~ 216 (238)
-+.||+.++.+++|+.++ .++.|.+.+++.|-|..+ +.|.|.+ +++.+..+...|.
T Consensus 6 ~i~Ip~~~vg~IIGkgG~-~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~ 70 (76)
T 1dtj_A 6 EMAVPENLVGAILGKGGK-TLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-SPAATQAAQYLIS 70 (76)
T ss_dssp EEEEETTTHHHHHCSTTH-HHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE-SHHHHHHHHHHHH
T ss_pred EEEEChHHcceEECCCch-HHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe-CHHHHHHHHHHHH
Confidence 478999999999999998 899999999999999985 5899988 4655544444444
No 56
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.86 E-value=0.024 Score=43.69 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=55.8
Q ss_pred cCCeeEEEec---h--hhhhhhcCCCCchhhHhhccccceEEEEe----------------eCCeEEEecCChhHHHHHH
Q 026458 154 LKDGYMFETS---T--GLSRMLLSSPTCPVLEELGKQLSFEIAVG----------------LNGRVWVNAESPSTVVLVS 212 (238)
Q Consensus 154 L~~G~~~~V~---~--~~v~rl~~~~~~~~l~~l~~~~~~ei~vG----------------~NG~IWi~~~~~~~~~~i~ 212 (238)
+..=+.+.+. | .++.++||..+. .++.|.++++|.|.+- -.|.|.|.+.+.+ .+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~-tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e---~i~ 87 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCS-YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPE---GLA 87 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGH-HHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHH---HHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCCh-HHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHH---HHH
Confidence 3444455554 2 589999998887 8999999999999995 4589999998875 456
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh
Q 026458 213 NAIMNSESLSAVQQKIMVDKLLQ 235 (238)
Q Consensus 213 ~~i~~~e~lt~~~~~~~~~~~~~ 235 (238)
+|++.++.|. ..+.+-..++.+
T Consensus 88 ~A~~~Ie~Ll-~~v~~~~~~~~~ 109 (119)
T 2yqr_A 88 AAKKLCENLL-QTVHAEYSRFVN 109 (119)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hchHHHHHHHHH
Confidence 7777777766 445544455444
No 57
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=94.67 E-value=0.032 Score=39.00 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=47.0
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEee------CCeEEEecCChhHHHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL------NGRVWVNAESPSTVVLVSNAIMN 217 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~------NG~IWi~~~~~~~~~~i~~~i~~ 217 (238)
-+.||..++.+++|+.++ .++.|.+.+++.|-+.. ++.|.|.+ +++.+..+...|..
T Consensus 8 ~i~Ip~~~vg~iIGkgG~-~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 8 ELTIPNDLIGCIIGRQGA-KINEIRQMSGAQIKIANPVEGSTDRQVTITG-SAASISLAQYLINV 70 (76)
T ss_dssp EEEEEHHHHHHHHCGGGH-HHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-CHHHHHHHHHHHHH
T ss_pred EEEEChHHcceEECCCCh-HHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-CHHHHHHHHHHHHH
Confidence 478999999999999998 99999999999999987 78999998 47655555554443
No 58
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=94.47 E-value=0.055 Score=38.42 Aligned_cols=55 Identities=4% Similarity=0.069 Sum_probs=44.4
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeC------CeEEEecCChhHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN------GRVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N------G~IWi~~~~~~~~~~i~~~i 215 (238)
-+.||+.++.+++|+.++ .++.|.+.+++.|-+-.. +.|.|.+ +++.+..+...|
T Consensus 10 ~i~Vp~~~vg~iIGkgG~-~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-~~~~v~~A~~~I 70 (82)
T 1zzk_A 10 QVTIPKDLAGSIIGKGGQ-RIKQIRHESGASIKIDEPLEGSEDRIITITG-TQDQIQNAQYLL 70 (82)
T ss_dssp EEEEETTTGGGGTCGGGH-HHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-CHHHHHHHHHHH
T ss_pred EEEEChHhcCeeECCCch-HHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-CHHHHHHHHHHH
Confidence 478999999999999998 999999999999999875 5899998 565444444433
No 59
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.28 E-value=0.073 Score=41.60 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=41.4
Q ss_pred hhhhhcCCCCchhhHhhccccceEEEEee----------------------CCeEEEecCChhHHHHHHHHHHHh
Q 026458 166 LSRMLLSSPTCPVLEELGKQLSFEIAVGL----------------------NGRVWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 166 ~v~rl~~~~~~~~l~~l~~~~~~ei~vG~----------------------NG~IWi~~~~~~~~~~i~~~i~~~ 218 (238)
++.+++|.++. .++.|.+.++|.|.|-- .|.|+|.+.+.+....+...|+.+
T Consensus 23 ~iG~IIGP~G~-tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~l 96 (131)
T 1k1g_A 23 FVGLLIGPRGN-TLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNI 96 (131)
T ss_dssp HHHHHHCSSSH-HHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred eeeeEECCCcH-HHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHH
Confidence 88899999998 89999999999999943 679999998886555444444443
No 60
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.24 E-value=0.033 Score=40.80 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=44.3
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEee----CCeEEEecCChhHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL----NGRVWVNAESPSTVVLVSN 213 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~----NG~IWi~~~~~~~~~~i~~ 213 (238)
.-+.||+.+++.++|+.+. .++.|.+.+++.|-+-. +|.|.|.+. ++....+..
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~-~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~ 76 (94)
T 2cte_A 19 ATVAIPKEHHRFVIGKNGE-KLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARH 76 (94)
T ss_dssp EEEECCTTTHHHHHCSSSC-HHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHH
T ss_pred EEEEEChHHeeeeECCCCh-hHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHH
Confidence 4578999999999999998 99999999999999965 699999986 654444433
No 61
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=94.06 E-value=0.074 Score=36.97 Aligned_cols=55 Identities=4% Similarity=0.008 Sum_probs=45.2
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC----eEEEecCChhHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG----RVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG----~IWi~~~~~~~~~~i~~~i 215 (238)
-+.||+.++..++|+.++ .++.|.+.+++.|-+-.+| .|-|.+. ++....+...|
T Consensus 8 ~i~ip~~~ig~iIGkgG~-~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I 66 (73)
T 2axy_A 8 RLLMHGKEVGSIIGKKGE-SVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMI 66 (73)
T ss_dssp EEEEEHHHHHHHHCGGGH-HHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHH
T ss_pred EEEEChhHeeeEECCCCH-HHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHH
Confidence 478999999999999998 9999999999999999998 5888885 65554444443
No 62
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=94.05 E-value=0.057 Score=38.29 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=44.7
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEee------CCeEEEecCChhHHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL------NGRVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~------NG~IWi~~~~~~~~~~i~~~i~ 216 (238)
-+.||..++..++|+.++ .++.|.+.+++.|-|-. ++.|.|.+ +++.+..+...|.
T Consensus 9 ~i~Ip~~~vg~IIGkgG~-~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~ 70 (82)
T 1wvn_A 9 ELTIPNNLIGCIIGRQGA-NINEIRQMSGAQIKIANPVEGSSGRQVTITG-SAASISLAQYLIN 70 (82)
T ss_dssp EEEEEGGGHHHHHCGGGH-HHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEchHhccceeCCCch-hHHHHHHHhCCEEEEecCCCCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 478999999999999998 99999999999999987 56999997 5554444444333
No 63
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=93.90 E-value=0.11 Score=37.82 Aligned_cols=57 Identities=7% Similarity=0.203 Sum_probs=45.8
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeC------CeEEEecCChhHHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN------GRVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N------G~IWi~~~~~~~~~~i~~~i~ 216 (238)
.-+.||..++.++||+.+. .++.|.+.+++.|-|-.+ +.|.|.+ +++.+..+...|.
T Consensus 17 ~~i~Ip~~~vG~IIGkgG~-~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-~~e~v~~A~~~I~ 79 (92)
T 1x4n_A 17 EEYKVPDGMVGFIIGRGGE-QISRIQQESGCKIQIAPDSGGLPERSCMLTG-TPESVQSAKRLLD 79 (92)
T ss_dssp EEEEEEHHHHHHHHCSSSH-HHHHHHHHSCCEEEECSCCTTCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEEChHHcceeECCCch-HHHHHHHHhCCEEEEcCCCCCCCccEEEEEe-CHHHHHHHHHHHH
Confidence 3588999999999999998 899999999999999886 4899998 4655544444443
No 64
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=93.84 E-value=0.052 Score=39.24 Aligned_cols=55 Identities=4% Similarity=0.078 Sum_probs=44.5
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEee------CCeEEEecCChhHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL------NGRVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~------NG~IWi~~~~~~~~~~i~~~i 215 (238)
-+.||+.++.++||+.++ .++.|.+.+++.|-|-. ++.|.|.+. ++.+..+.+.|
T Consensus 17 ~i~Ip~~~vg~IIGkgG~-~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I 77 (89)
T 1j5k_A 17 QVTIPKDLAGSIIGKGGQ-RIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLL 77 (89)
T ss_dssp EEEEEHHHHHHHHCGGGH-HHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHH
T ss_pred EEEEChhhcceeECCCCH-hHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHH
Confidence 478999999999999998 89999999999999987 488999984 65444444433
No 65
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=93.73 E-value=0.079 Score=37.97 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=45.1
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeC---------CeEEEecCChhHHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN---------GRVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~~~~~~~~i~~~i~ 216 (238)
+-+.||+.++.+++|+.+. .++.|.+.+++.|-|..+ +.|.|.+ +++.+..+...|.
T Consensus 5 ~~i~IP~~~vG~IIGkgG~-~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G-~~~~v~~A~~~I~ 70 (87)
T 1ec6_A 5 VEIAVPENLVGAILGKGGK-TLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-SPAATQAAQYLIS 70 (87)
T ss_dssp EEEEEEHHHHHHHHCGGGH-HHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEES-SHHHHHHHHHHHH
T ss_pred EEEEEChHHcCeeECCCcH-hHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 3578999999999999998 899999999999999975 4899988 4654444444333
No 66
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=93.70 E-value=0.12 Score=40.75 Aligned_cols=58 Identities=10% Similarity=0.216 Sum_probs=47.8
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC--------eEEEecCChhHHHHHHHHHHHh
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG--------RVWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG--------~IWi~~~~~~~~~~i~~~i~~~ 218 (238)
-+.||+.++..++|+.++ .++.|.+.+++.|-+-.++ .|+|.+ +++.+..+..+|..+
T Consensus 5 ~~~Vp~~~~g~iIGk~G~-~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~i 70 (164)
T 2jvz_A 5 EIMIPAGKAGLVIGKGGE-TIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDI 70 (164)
T ss_dssp EEEECTTCHHHHTCTTTH-HHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEechhheeEEECCChH-HHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHH
Confidence 367999999999999998 9999999999999997765 799998 776666666655543
No 67
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=93.27 E-value=0.061 Score=42.66 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=46.4
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC--------eEEEecCChhHHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG--------RVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG--------~IWi~~~~~~~~~~i~~~i~ 216 (238)
-+.||+.++.+++|+.++ .++.|.+.+++.|-+-.+| .|+|.+ +++.+..+...|.
T Consensus 88 ~i~vp~~~~g~iIGkgG~-~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~ 151 (163)
T 3krm_A 88 HIRVPASAAGRVIGKGGK-TVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIR 151 (163)
T ss_dssp EEEEETTTHHHHHCGGGH-HHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEcChhheeeEEcCCCh-HHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHH
Confidence 478999999999999998 8999999999999999888 799998 7765554444443
No 68
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=93.17 E-value=0.36 Score=35.75 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=45.6
Q ss_pred CCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCcc------cc-cccCcCCCCEEEEEE
Q 026458 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGT------RR-NIPKFEIGSLLYVRV 128 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~gat------k~-~r~~l~~GDlV~ArV 128 (238)
.|..|+...+.|+++..+.+.|-+.....+.|+.....-+. ++ ....|++||+|+.+-
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEEE
Confidence 57789999999999999999999977777778875544331 22 345699999999983
No 69
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=89.43 E-value=0.43 Score=38.13 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=47.0
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeC---------CeEEEecCChhHHHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN---------GRVWVNAESPSTVVLVSNAIMN 217 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~~~~~~~~i~~~i~~ 217 (238)
-+.||..++.+++|+.+. .++.|.+.+++.|-|-.+ +.|.|.+ +++.+..+...|..
T Consensus 107 ~i~vp~~~~g~iIGkgG~-~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~ 172 (174)
T 1j4w_A 107 NFIVPTGKTGLIIGKGGE-TIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEE 172 (174)
T ss_dssp EEEEETTTHHHHHCGGGH-HHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred EEEEChHHcCeeECCCch-HHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHH
Confidence 478999999999999998 899999999999999875 6899988 77666665555543
No 70
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.96 E-value=0.5 Score=33.75 Aligned_cols=59 Identities=8% Similarity=0.087 Sum_probs=46.1
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEee--CCeEEEecCChhHHHHHHHHHHHh
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL--NGRVWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~--NG~IWi~~~~~~~~~~i~~~i~~~ 218 (238)
-+.||..++..++|+.++ .++.|.+.+++.|-+-. ++++..-..+++....+.+.|...
T Consensus 13 ~i~VP~~~vG~IIGkgG~-tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 13 QVRVPYRVVGLVVGPKGA-TIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAH 73 (83)
T ss_dssp EEECCHHHHHHHHTTTTS-SHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHH
T ss_pred EEEeChHHeeeeECCCch-HHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHH
Confidence 478999999999999998 89999999999999873 455444444777777777666654
No 71
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=87.90 E-value=0.33 Score=38.34 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=43.4
Q ss_pred hhhhhhcCCCCchhhHhhccccceEEEEeeCC------------------------eEEEecCChhHH--HHHHHHHHHh
Q 026458 165 GLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG------------------------RVWVNAESPSTV--VLVSNAIMNS 218 (238)
Q Consensus 165 ~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG------------------------~IWi~~~~~~~~--~~i~~~i~~~ 218 (238)
.++.+++|.+++ -++.|.+.++|.|.|-=.| .|+|.+.+++.. ..+..|+..+
T Consensus 17 NfiG~IiGPrG~-t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I 95 (140)
T 2bl5_A 17 NFVGRILGPRGL-TAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEV 95 (140)
T ss_dssp CHHHHHTTTTHH-HHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHH
T ss_pred CeeeEEECCCcc-hHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHH
Confidence 568899999888 8899999999999997666 899999887532 3556666666
Q ss_pred cc
Q 026458 219 ES 220 (238)
Q Consensus 219 e~ 220 (238)
+.
T Consensus 96 ~~ 97 (140)
T 2bl5_A 96 KK 97 (140)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 72
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=87.87 E-value=0.63 Score=39.31 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=50.6
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEe-eCCeEEEecCC----hhHHHHHHHHHHHhc
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG-LNGRVWVNAES----PSTVVLVSNAIMNSE 219 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG-~NG~IWi~~~~----~~~~~~i~~~i~~~e 219 (238)
.+.||+.++..++|+.+. +++.|.+++++.|-+- .+|.|-|.+.+ +.....+...|+.+-
T Consensus 37 ~i~IP~~kig~lIG~gGk-~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 37 YVKIPKDRIAVLIGKKGQ-TKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEECCHHHHHHHHCGGGH-HHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHhhhhhcccHH-HHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 689999999999998887 9999999999999998 89999999876 666666666665543
No 73
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=87.74 E-value=0.67 Score=37.08 Aligned_cols=54 Identities=7% Similarity=0.053 Sum_probs=43.5
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeC--------CeEEEecCChhHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLN--------GRVWVNAESPSTVVLVSN 213 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N--------G~IWi~~~~~~~~~~i~~ 213 (238)
.-+.||..++.+++|+.++ .++.|.+.+++.|-+-.+ +.|.|.+ +++.+..+..
T Consensus 106 ~~i~Vp~~~vg~iIGkgG~-~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~ 167 (178)
T 2anr_A 106 VKIIVPNSTAGLIIGKGGA-TVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSG-EPEQNRKAVE 167 (178)
T ss_dssp EEEEEEHHHHHHHHCGGGH-HHHHHHHHSSCEEEECCCC----CCEEEEEEES-SHHHHHHHHH
T ss_pred EEEEEchhheeeeECCCcH-HHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEc-CHHHHHHHHH
Confidence 3588999999999999998 899999999999999876 5899987 4544433333
No 74
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=86.80 E-value=0.31 Score=38.32 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=44.5
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEee-------CCeEEEecCChhHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL-------NGRVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~-------NG~IWi~~~~~~~~~~i~~~i 215 (238)
-+.||+.++.+++|+.++ .++.|.+.+++.|-+-. ++.|.|.+ +++.+..+...|
T Consensus 92 ~i~vp~~~~g~iIGkgG~-~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I 153 (160)
T 2jzx_A 92 RLVVPASQCGSLIGKGGC-KIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQI 153 (160)
T ss_dssp EEEEEHHHHHHHHCGGGH-HHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHH
T ss_pred EEEEChhheeeEECCCCH-HHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHH
Confidence 478999999999999998 89999999999999875 48899998 665554444433
No 75
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=86.37 E-value=1.4 Score=42.85 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=55.4
Q ss_pred CCCCCC--EEEEEEEEecCceEEEEec-CCeeeeecCcccCC---c------cc----ccccCcCCCCEEEEEEEecCCC
Q 026458 71 VPCVED--TVLGIVVDCKADNFFVDIR-GPTIAFLPVLAFEG---G------TR----RNIPKFEIGSLLYVRVVKANPG 134 (238)
Q Consensus 71 ~P~vGD--iVIG~V~~v~~~~~~VdI~-~~~~a~L~~~~f~g---a------tk----~~r~~l~~GDlV~ArV~~~~~~ 134 (238)
.+++|+ ..-|+|+++....++|.|. ....|.+|.+.+.. . +. +....|++||-|..+|.+++..
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 578899 9999999999999999995 45789999877642 1 11 2345699999999999999864
Q ss_pred -CcceEEE
Q 026458 135 -MNPELSC 141 (238)
Q Consensus 135 -~~~~Ls~ 141 (238)
+.+.++.
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 5566654
No 76
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=86.35 E-value=2.5 Score=31.00 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccC
Q 026458 71 VPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFE 108 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ 108 (238)
.|++|+.|-+.|+.+......|+|....+|.+|++++.
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~ 95 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS 95 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCc
Confidence 79999999999999999999999988889999998763
No 77
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=84.18 E-value=1.3 Score=35.37 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=44.6
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC---------eEEEecCChhHHHHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG---------RVWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG---------~IWi~~~~~~~~~~i~~~i~ 216 (238)
-+.||..++.+++|+.++ .++.|.+.+++.|-+-..+ .|.|.+ +++....+...|.
T Consensus 9 ~i~vp~~~ig~iIGkgG~-~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~ 73 (178)
T 2anr_A 9 KVLIPSYAAGSIIGKGGQ-TIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-TIEALNAVHGFIA 73 (178)
T ss_dssp EEEEEHHHHHHHHCGGGH-HHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEChhHeeeeECCCcH-HHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-CHHHHHHHHHHHH
Confidence 478999999999999998 9999999999999998765 577877 4655555544444
No 78
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=82.96 E-value=1.5 Score=34.30 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=45.9
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCe-------EEEecCChhHHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGR-------VWVNAESPSTVVLVSNAIM 216 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~-------IWi~~~~~~~~~~i~~~i~ 216 (238)
+-+.||..++..++|++++ .++.|.+.+++.|-+-.++. |-|.+ +++.+..+...|.
T Consensus 5 ~~~~ip~~~~g~iIGk~G~-~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~ 68 (163)
T 3krm_A 5 VQVFIPAQAVGAIIGKKGQ-HIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIY 68 (163)
T ss_dssp EEEEEEGGGHHHHHCGGGH-HHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechhhcceeECCCcH-HHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 3478999999999999998 89999999999999988774 78887 6665555554443
No 79
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=82.32 E-value=1.9 Score=34.25 Aligned_cols=56 Identities=5% Similarity=0.059 Sum_probs=43.4
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEee-C-----CeEEEecCChhHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGL-N-----GRVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~-N-----G~IWi~~~~~~~~~~i~~~i 215 (238)
+-+.||..++.+++|+.++ .++.|.+.+++.|-|-. + ..|.|.+. ++.+..+...|
T Consensus 5 ~~~~vp~~~vg~iIGkgG~-~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I 66 (174)
T 1j4w_A 5 IDVPIPRFAVGIVIGRNGE-MIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEII 66 (174)
T ss_dssp EEEEEEHHHHHHHHCGGGH-HHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHH
T ss_pred EEEEEChhheeeeecCCch-HHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHH
Confidence 3578999999999999998 99999999999999974 3 36888874 55444444333
No 80
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=81.97 E-value=1.6 Score=34.04 Aligned_cols=53 Identities=2% Similarity=-0.012 Sum_probs=43.2
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCC----eEEEecCChhHHHHHHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNG----RVWVNAESPSTVVLVSN 213 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG----~IWi~~~~~~~~~~i~~ 213 (238)
-+.||+.++..++|+.+. .++.|.+.+++.|-+-.+| .|-|.+. ++.+..+..
T Consensus 8 ~~~vp~~~~g~iIGkgG~-~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~ 64 (160)
T 2jzx_A 8 RLLMHGKEVGSIIGKKGE-SVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFA 64 (160)
T ss_dssp EEEEEHHHHHHHHCGGGH-HHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHH
T ss_pred EEEEchhheeeeECCCcH-HHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHH
Confidence 478999999999999998 9999999999999999887 8888874 444433333
No 81
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=79.85 E-value=8.4 Score=32.03 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=51.6
Q ss_pred eEEEEccCCccCCCCCCEEEEEEEEecCceEEEEecCCeeeeecCcccCCc------cc-c------cccCcCCCCEEEE
Q 026458 60 KYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGG------TR-R------NIPKFEIGSLLYV 126 (238)
Q Consensus 60 ~i~V~~~~~~Y~P~vGDiVIG~V~~v~~~~~~VdI~~~~~a~L~~~~f~ga------tk-~------~r~~l~~GDlV~A 126 (238)
.++|...---+.|.+|+++.|+|+.++.+...+-+-..+++.++....+.. .. . ....-++|+-|+=
T Consensus 115 ~~~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRF 194 (214)
T 2rf4_A 115 FTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRF 194 (214)
T ss_dssp EEEEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEE
T ss_pred EEEEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEE
Confidence 345554434578999999999999999998888666677777776544311 10 0 0111236999999
Q ss_pred EEEecCCCC
Q 026458 127 RVVKANPGM 135 (238)
Q Consensus 127 rV~~~~~~~ 135 (238)
||.++.-++
T Consensus 195 rV~~~~~~~ 203 (214)
T 2rf4_A 195 TVRNVHTTG 203 (214)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEecC
Confidence 999986544
No 82
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.57 E-value=17 Score=27.25 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=39.2
Q ss_pred cCCCCCCEEEEEEEEe-cCceEEEEecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEe
Q 026458 70 YVPCVEDTVLGIVVDC-KADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v-~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~ 130 (238)
..|..| -++|+|++. .++.|.|.+.....-.-+ ++|.-++ +-.+.+||.|..+...
T Consensus 10 ~~p~eg-e~~g~V~~~lgn~~f~V~l~nG~~~la~---i~GK~Rk-~IwI~~GD~VlVe~~~ 66 (111)
T 2dgy_A 10 IVPSNQ-QQIVRVLRTPGNNLHEVETAQGQRFLVS---MPSKYRK-NIWIKRGDFLIVDPIE 66 (111)
T ss_dssp CCCCSS-CEEEEEEECCSSSEEEEECTTSCEEEEE---CCTTCCS-CCCCCSSCEEEEEECS
T ss_pred cCCCCC-eEEEEEEEeCCCCEEEEEeCCCCEEEEE---echhhcc-cEEEcCCCEEEEEecc
Confidence 467755 589999997 668899988654443333 2344444 7789999999998754
No 83
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=76.23 E-value=0.74 Score=45.48 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=8.2
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i 215 (238)
..++|+|.+++.+||+.+. +++.|.++++..|-+.-+|.|-|.+.+.+....+.+.|
T Consensus 572 ~~~~i~~~ki~~vig~gg~-~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i 628 (726)
T 4aid_A 572 ETINIPTDKIREVIGSGGK-VIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWI 628 (726)
T ss_dssp -------------------------------------------CCSCHHHHHHHHHC-
T ss_pred EEEeCCHHHHHhhcCCCch-hHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHH
Confidence 4689999999999998887 99999999999999999999999998875444433333
No 84
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=72.02 E-value=4.9 Score=36.56 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=49.4
Q ss_pred eeEEEechhhhhhhcCCCCc-hhhHhhccccceEEEEeeCC----------eEEEecCChhHHHHHHHHHHHhc
Q 026458 157 GYMFETSTGLSRMLLSSPTC-PVLEELGKQLSFEIAVGLNG----------RVWVNAESPSTVVLVSNAIMNSE 219 (238)
Q Consensus 157 G~~~~V~~~~v~rl~~~~~~-~~l~~l~~~~~~ei~vG~NG----------~IWi~~~~~~~~~~i~~~i~~~e 219 (238)
-.-++|++...+.++|+.++ .+++.|.+.++..|.+=..+ -|||.+ ..+.+..+..+|..+-
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 34688999999999999872 37899999999999976433 499998 8888888888887764
No 85
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=71.55 E-value=5.1 Score=39.61 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=47.3
Q ss_pred CCCCCEEEEEEEEecCceEEEEecC-CeeeeecCcccC--Cc---------c---cc----cccCcCCCCEEEEEEEecC
Q 026458 72 PCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFE--GG---------T---RR----NIPKFEIGSLLYVRVVKAN 132 (238)
Q Consensus 72 P~vGDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~--ga---------t---k~----~r~~l~~GDlV~ArV~~~~ 132 (238)
.++ ...-|+|+++....+.|.|.. ...|.+|++... .. + ++ ....|++||-|..+|.+++
T Consensus 668 ~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 668 NNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp TCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC---
T ss_pred cCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEE
Confidence 444 799999999999999999976 578999987653 11 0 11 1467999999999999987
Q ss_pred CC----CcceEE
Q 026458 133 PG----MNPELS 140 (238)
Q Consensus 133 ~~----~~~~Ls 140 (238)
.. ..+.|+
T Consensus 747 ~~~~~~~kI~ls 758 (760)
T 2vnu_D 747 DPITSKRKAELL 758 (760)
T ss_dssp -----CCEEEC-
T ss_pred CccccCCcEEEE
Confidence 64 444444
No 86
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=71.35 E-value=6.4 Score=28.25 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCCcEEecCCccCCCCCCCCCceeecCcEEE-eCCEEEEEEeeEeEEec----CCeEEEEc
Q 026458 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFSK----PNKYWVES 65 (238)
Q Consensus 9 ~~~~~iV~PGd~l~~~~~~~~~~~~~G~G~y~-~~g~i~as~~G~v~~~~----~~~i~V~~ 65 (238)
.+..+.|.||..|.--- +-.+-||.++-. .|..|+|.+.|.|+... .+.++|.|
T Consensus 25 ~~~Gq~V~aG~IivRQR---Gtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~VsV~p 83 (85)
T 3v2d_0 25 RYEGQVVRAGNILVRQR---GTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRP 83 (85)
T ss_dssp SCTTCEECTTCEEEECS---SCSEEECTTEEECTTCCEEESSSEEEEEEECGGGCEEEEEEE
T ss_pred ecCCeEEcCCeEEEecC---CccCcCCCCEeEcCCCeEEEecCEEEEEEEcCCCCEEEEEEE
Confidence 45678999999885321 125888988875 58999999999998763 23567765
No 87
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=70.47 E-value=8 Score=28.33 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=39.4
Q ss_pred EEechhhhhhhcCCCCchhhHhhccc-cceEEEEee-CCeEEEecCChhHHHHHHHHH
Q 026458 160 FETSTGLSRMLLSSPTCPVLEELGKQ-LSFEIAVGL-NGRVWVNAESPSTVVLVSNAI 215 (238)
Q Consensus 160 ~~V~~~~v~rl~~~~~~~~l~~l~~~-~~~ei~vG~-NG~IWi~~~~~~~~~~i~~~i 215 (238)
+.||+.+.+.++|++++ -++.|.+. .++.|-+=. +..|-|.++ ++.+..+...|
T Consensus 31 i~vp~~~h~~IIG~~G~-~Ik~i~~~~~~v~I~fp~~~~~ItI~G~-~~~V~~a~~~I 86 (102)
T 2ctf_A 31 VAAPSWLHRFIIGKKGQ-NLAKITQQMPKVHIEFTEGEDKITLEGP-TEDVSVAQEQI 86 (102)
T ss_dssp EECCSTTHHHHHTTTTC-HHHHHHHHCSSSEEEECSSSCEEEEEEC-HHHHHHHHHHH
T ss_pred EEeCHHHHhhhcCCCCc-cHHHHHHHcCCcEEEeCCCCCEEEEECC-HHHHHHHHHHH
Confidence 78999999999999998 67777664 477777653 457888885 65554444433
No 88
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=69.63 E-value=11 Score=38.27 Aligned_cols=69 Identities=13% Similarity=0.019 Sum_probs=53.3
Q ss_pred CCCCCEEEEEEEEecCceEEEEecC-CeeeeecCcccC--Cc------------ccc----cccCcCCCCEEEEEEEecC
Q 026458 72 PCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFE--GG------------TRR----NIPKFEIGSLLYVRVVKAN 132 (238)
Q Consensus 72 P~vGDiVIG~V~~v~~~~~~VdI~~-~~~a~L~~~~f~--ga------------tk~----~r~~l~~GDlV~ArV~~~~ 132 (238)
++ |...-|+|+++....+.|.|.. ...|.+|++... .. -++ ....|++||-|..+|.+++
T Consensus 885 ~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd 963 (977)
T 2wp8_J 885 NN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 963 (977)
T ss_dssp HT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCC
T ss_pred cc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEc
Confidence 44 8899999999999999999976 578999988764 11 011 2467999999999999987
Q ss_pred CC----CcceEEE
Q 026458 133 PG----MNPELSC 141 (238)
Q Consensus 133 ~~----~~~~Ls~ 141 (238)
.. ..+.|++
T Consensus 964 ~~~~~~~kI~Lsl 976 (977)
T 2wp8_J 964 DPITSKRKAELLL 976 (977)
T ss_dssp CSSSCCCCCCEEE
T ss_pred CcccCCCceEEEe
Confidence 52 4566665
No 89
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=67.61 E-value=7.4 Score=32.00 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=52.3
Q ss_pred hhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhhc
Q 026458 166 LSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES-LSAVQQKIMVDKLLQRI 237 (238)
Q Consensus 166 ~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~-lt~~~~~~~~~~~~~~~ 237 (238)
..-|++|+.+. -++.|...++|.|.|.-+ .|.|-+ +.+....+-++|..+-. -....+..++++..+++
T Consensus 108 ~~GrIIGk~G~-tik~iE~~Tg~~I~v~~~-~v~i~G-~~~~i~~Ar~~i~~li~g~~h~~vy~~~~~~~~~~ 177 (191)
T 1tua_A 108 IKGRIIGEGGR-ARRTIEEMTDTYINVGEY-EVAIIG-DYERAMAAKQAIEMLAEGRMHSTVYRHLERIMREI 177 (191)
T ss_dssp HHHHHHCGGGH-HHHHHHHHHTCEEEECSS-EEEEEE-EHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhheeCCCcc-HHHHHHHHHCceEEEcCC-EEEEEe-ChHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Confidence 57889999887 889998899999999877 777765 77777888888877743 33356777776665543
No 90
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=65.67 E-value=7 Score=27.52 Aligned_cols=45 Identities=13% Similarity=0.303 Sum_probs=34.6
Q ss_pred CCCCcEEecCCccCCCCCCCCCceeecCcEEE-eCCEEEEEEeeEeEEe
Q 026458 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFS 56 (238)
Q Consensus 9 ~~~~~iV~PGd~l~~~~~~~~~~~~~G~G~y~-~~g~i~as~~G~v~~~ 56 (238)
.+..+.|.||..|.--- +-.+-||.++-. .|..|+|.+.|.|+..
T Consensus 16 ~~~Gq~V~aG~IivRQR---Gtk~hPG~NVG~GkD~TLfAl~~G~V~f~ 61 (76)
T 3r8s_W 16 RFGGESVLAGSIIVRQR---GTKFHAGANVGCGRDHTLFAKADGKVKFE 61 (76)
T ss_dssp SCTTCEECTTCEEEECS---SCSSEECTTEEECTTSCEEESSSEEEEEE
T ss_pred ecCCeEEecCcEEEecc---CccCcCCCCeeecCCCeEEEccCEEEEEE
Confidence 45678999999885321 125788888875 5899999999999875
No 91
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=63.19 E-value=48 Score=25.94 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=39.8
Q ss_pred CCCCCCEEEEEEEEe-cCceEEEEecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEec
Q 026458 71 VPCVEDTVLGIVVDC-KADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKA 131 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v-~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~ 131 (238)
.|. .+-++|+|+.. .+..|.|.+.....-.-++ +|.-++ +-.+.+||.|..+....
T Consensus 27 ~p~-ege~~g~V~e~lgn~~f~V~l~nG~~~La~I---~GKmRk-~IwI~~GD~VlVe~~~y 83 (143)
T 1d7q_A 27 FKE-DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHI---RGKLRK-KVWINTSDIILVGLRDY 83 (143)
T ss_dssp CCC-TTEEEEEEEEECSSSEEEEEETTTEEEEEEC---CSGGGG-SCCCCTTCEEEEECSSS
T ss_pred CCC-CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEe---ccccee-eEEecCCCEEEEeeccC
Confidence 565 45799999997 5678999887654433332 454455 78899999999886543
No 92
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=62.35 E-value=8.4 Score=28.93 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=44.1
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEe-eCCeEEEecCChhHHHHHHHHHHHhccCCHHHHHHHHHHHHhh
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG-LNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVDKLLQR 236 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG-~NG~IWi~~~~~~~~~~i~~~i~~~e~lt~~~~~~~~~~~~~~ 236 (238)
++.-++|.++.+++.... .++-.+||.|.|= .+|.+||...++........- ...... .+++++.+++.+++
T Consensus 56 il~~cnp~~a~~~l~~~p-----~~g~~lPcrv~v~e~~g~~~v~~~~p~~~~~~~~~-~~l~~v-a~~v~~~l~~ii~~ 128 (130)
T 1q9u_A 56 ILEVCNPQEAARVLNENL-----LVGYFLPCKLVVYQENGTTKIGMPKPTMLVGMMND-PALKEI-AADIEKRLAACLDR 128 (130)
T ss_dssp EEEEECHHHHHHHHHHCG-----GGGGGCSEEEEEEEETTEEEEEEECHHHHHHTTTC-HHHHHH-HHHHHHHHHHHHHT
T ss_pred EEEEeCHHHHHHHHHhCH-----HHHhhcCeEEEEEEcCCEEEEEEeCHHHHHHhcCC-HHHHHH-HHHHHHHHHHHHHh
Confidence 356699999999885322 2444689999874 589999999998644332210 111111 24555555555554
Q ss_pred c
Q 026458 237 I 237 (238)
Q Consensus 237 ~ 237 (238)
+
T Consensus 129 ~ 129 (130)
T 1q9u_A 129 C 129 (130)
T ss_dssp T
T ss_pred c
Confidence 3
No 93
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=60.19 E-value=24 Score=24.82 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=35.9
Q ss_pred EEEEEEEec-CceEEEEecCC--eeeeecCcccCCcccccccCcCCCCEEEEEEEe
Q 026458 78 VLGIVVDCK-ADNFFVDIRGP--TIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVK 130 (238)
Q Consensus 78 VIG~V~~v~-~~~~~VdI~~~--~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~ 130 (238)
+-|+|+..- +.+|.|.+... ..+.+ +|.-++++-.+.+||.|..+...
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i-----~GK~Rk~~I~Il~GD~V~ve~~~ 66 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHI-----SGKMRQHYIRILPEDRVVVELSP 66 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEE-----CHHHHHTTCCCCTTCEEEEEEET
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEe-----CcceecCCccCCCCCEEEEEECc
Confidence 679999987 89999998653 23333 35556667789999999888754
No 94
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=57.67 E-value=22 Score=26.78 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=36.5
Q ss_pred cCCCCCCEEEEEEEEecC-ceEEEEecCC--eeeeecCcccCCcccccccCcCCCCEEEEEEE
Q 026458 70 YVPCVEDTVLGIVVDCKA-DNFFVDIRGP--TIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129 (238)
Q Consensus 70 Y~P~vGDiVIG~V~~v~~-~~~~VdI~~~--~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~ 129 (238)
..|..|.. +|+|+...+ ..|.|..... +.+.+ +|..++ +-...+||.|..+..
T Consensus 27 ~~~~~~e~-~G~Vi~~lgn~~y~V~~~dG~~~l~~i-----~GK~Rk-~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 27 VFKEEGQE-YGQVQRMLGNGRLDAYCFDGQKRLCHI-----RGKMRK-KVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCCCTTEE-EEEEEEEEETTEEEEEETTSCEEEEEC-----CHHHHH-HSCCCTTCEEEEEEC
T ss_pred cCCCCCEE-EEEEEEEcCCCEEEEEeCCCCEEEEEE-----cCceec-CCcCCCCCEEEEEEE
Confidence 36777655 899999987 9999977542 22322 344444 666779999987764
No 95
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=56.43 E-value=13 Score=27.97 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=34.6
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEe-eCCeEEEecCChhHHH
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG-LNGRVWVNAESPSTVV 209 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG-~NG~IWi~~~~~~~~~ 209 (238)
++.-++|.++.+++.... .++-.+||.|.|= .+|.+||...++....
T Consensus 53 il~~cnP~~a~~~l~~~p-----~~g~~lPcrv~V~e~~~~v~v~~~~p~~~~ 100 (129)
T 1j3m_A 53 ILGACNPNLAARALEALP-----EIGLLLPCNVVLREAEEGVEVLIQDPKEMF 100 (129)
T ss_dssp EEEEECHHHHHHHHHHCG-----GGGGGCSEEEEEEEETTEEEEEECCHHHHG
T ss_pred EEEECCHHHHHHHHHhCH-----HHHhhcCcEEEEEEeCCeEEEEEeCHHHHH
Confidence 345789999999885322 2445689999986 5788999999986443
No 96
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=56.36 E-value=10 Score=27.56 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=39.2
Q ss_pred CCCCcEEecCCccCCCCCCCCCceeecCcEEE-eCCEEEEEEeeEeEEec--C--CeEEEEcc
Q 026458 9 NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLRFSK--P--NKYWVESS 66 (238)
Q Consensus 9 ~~~~~iV~PGd~l~~~~~~~~~~~~~G~G~y~-~~g~i~as~~G~v~~~~--~--~~i~V~~~ 66 (238)
.+..+.|.||..|.--- +-.+-||.++-. .|..|+|.+.|.|+... . +.++|.|.
T Consensus 25 ~~gGq~V~aG~IivRQR---Gtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~V~V~p~ 84 (91)
T 2zjr_T 25 KFGGEVVKAGNILVRQR---GTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFISIEAA 84 (91)
T ss_dssp SCTTCEECSSCEEECCS---SSSSEECTTEECCTTSCEEESSCEEEEEEEETTTEEEEEECCC
T ss_pred ecCCeEEcCCeEEEecC---CCEEcCCCCEEEcCCCcEEeccceEEEEEEcCCCcEEEEEEeC
Confidence 45678999999885321 125788888765 58899999999998751 1 35677663
No 97
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=52.67 E-value=13 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=25.3
Q ss_pred ccccCcCCCCEEEEEEEecCCCCc------ceEEEecCCCc
Q 026458 113 RNIPKFEIGSLLYVRVVKANPGMN------PELSCTDASGK 147 (238)
Q Consensus 113 ~~r~~l~~GDlV~ArV~~~~~~~~------~~Ls~~~~~~~ 147 (238)
.+|+.++|||-|..|+...+.+.. +.++..+|+|+
T Consensus 8 tDr~iYrPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~ 48 (102)
T 2p9r_A 8 TDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGN 48 (102)
T ss_dssp ESCSEECTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSC
T ss_pred CCCcccCCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCC
Confidence 478999999999999987654322 35666776553
No 98
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=52.66 E-value=17 Score=28.10 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCCCCEE---------EEEEEEecCceEEEEecC----CeeeeecC
Q 026458 72 PCVEDTV---------LGIVVDCKADNFFVDIRG----PTIAFLPV 104 (238)
Q Consensus 72 P~vGDiV---------IG~V~~v~~~~~~VdI~~----~~~a~L~~ 104 (238)
.++||+| ||.|++.+++.+.|.+.+ |.+|=||.
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVlaVlKHP~QGDLHn 53 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVLKHPVQGDLHN 53 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCCC-----
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEEEecCCCccCCCC
Confidence 6889999 899999999999999865 66666663
No 99
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=52.19 E-value=40 Score=22.70 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=32.1
Q ss_pred EEEEEEEecC-ceEEEEecC--CeeeeecCcccCCcccccccCcCCCCEEEEEEE
Q 026458 78 VLGIVVDCKA-DNFFVDIRG--PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129 (238)
Q Consensus 78 VIG~V~~v~~-~~~~VdI~~--~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~ 129 (238)
+.|+|+...+ .+|.|.... .+.+.+ +|..++.+-...+||.|..++.
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~i-----~Gk~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELENGHVVTAHI-----SGKMRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTSCEEEEEE-----CSSGGGTTCCCCTTCEECCEEC
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEEE-----cceEeccCccCCCCCEEEEEEe
Confidence 4699999988 999998733 223333 4555555555679999987754
No 100
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=50.49 E-value=20 Score=26.42 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=40.8
Q ss_pred cCCCC-CCEEEEEEEEe-cCceEEEEecCCeeeeecCcccCCcccccccCcCCCCEEEEEEEecC
Q 026458 70 YVPCV-EDTVLGIVVDC-KADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKAN 132 (238)
Q Consensus 70 Y~P~v-GDiVIG~V~~v-~~~~~~VdI~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~ 132 (238)
-.|.. ..-++|+|++. .++.|.|.+.....-.-++ +|.-++ +-.+.+||.|..+....+
T Consensus 13 ~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i---~GKmRk-~IwI~~GD~VlVe~~~yd 73 (102)
T 1jt8_A 13 RIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRI---PGRLKN-RIWVREGDVVIVKPWEVQ 73 (102)
T ss_dssp CCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEEC---CHHHHH-HHCCCSCEEEEECCBCCT
T ss_pred ccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEE---ccccee-eEEecCCCEEEEEeccCC
Confidence 36652 45699999997 6688999987654433332 344444 778999999998876543
No 101
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=49.86 E-value=27 Score=29.15 Aligned_cols=67 Identities=7% Similarity=0.033 Sum_probs=47.0
Q ss_pred hhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHh
Q 026458 166 LSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES-LSAVQQKIMVDKLLQ 235 (238)
Q Consensus 166 ~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~-lt~~~~~~~~~~~~~ 235 (238)
.+-|++|+.+. .++.|...++|.|.|. .-.|.|-+ +.+....+.++|..+-. -....+=.++++..+
T Consensus 139 ~~GriIGk~G~-tik~ie~~Tg~~I~v~-~~~v~i~G-~~~~i~~A~~~i~~li~g~~~~~vy~~l~~~~~ 206 (219)
T 2e3u_A 139 VRGRIIGRKGR-TRQIIEEMSGASVSVY-GKTVAIIG-NPIQIEIAKTAIEKLARGSPHGSVYRYLERRKK 206 (219)
T ss_dssp HHHHHHCGGGH-HHHHHHHHHCCEEEEE-TTEEEEEE-CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHC--
T ss_pred hhheeECCCch-HHHHHHHHhCceEEEC-CeEEEEEe-CHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 46679999988 8999999999999996 45788887 77777777777766643 333434444444433
No 102
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=45.28 E-value=19 Score=24.84 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCcEEecCCccCCCCCCCCCceeecCcEEE-eCCEEEEEEeeEeE
Q 026458 10 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQ-ECDSVSVIKAGKLR 54 (238)
Q Consensus 10 ~~~~iV~PGd~l~~~~~~~~~~~~~G~G~y~-~~g~i~as~~G~v~ 54 (238)
+..+.|.||..|.--- .-.+-||.++-. .|..|+|.+.|.|+
T Consensus 26 ~~Gq~V~aG~IivrQR---gtk~hPG~nVg~GkD~TLfAl~~G~V~ 68 (69)
T 2ftc_O 26 MEGHYVHAGNIIATQR---HFRWHPGAHVGVGKNKCLYALEEGIVR 68 (69)
T ss_pred cCCeEecCCeEEEecC---CCeEcCCCCeeecCCCcEEEccceEEe
Confidence 4567899999885321 014667777654 58899999999986
No 103
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=44.61 E-value=4.6 Score=39.80 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred eeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHHH
Q 026458 157 GYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVV 209 (238)
Q Consensus 157 G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~ 209 (238)
-..++|+|.+++.++|+.+. .++.|.+.++..|=++-+|.|.|.+.+.....
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk-~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~ 612 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGS-VIRALTEETGTTIEIEDDGTVKIAATDGEKAK 612 (723)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEEECHHHhcccccccce-eeeeeehhhCceEEecCCccEEEecCCHHHHH
Confidence 45789999999999998876 88888888999999999999999987765443
No 104
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=42.85 E-value=63 Score=26.57 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=41.1
Q ss_pred cccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc------CCHHHHHHHHHHHHh
Q 026458 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES------LSAVQQKIMVDKLLQ 235 (238)
Q Consensus 184 ~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~------lt~~~~~~~~~~~~~ 235 (238)
+..++.|.=|+||.++|=+.+.+++.=..+++.+... +..++-++-+++.+.
T Consensus 15 ~~~p~~Il~grD~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~~~~e~~~i~~~L~ 72 (197)
T 3gr0_A 15 EKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARVINENEENKRISIWLD 72 (197)
T ss_dssp GTTTCEEEECTTSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEECHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCcEEEEEccccHHHHHHHHHHhcCCCCCcEEeehHHHHHHHHHHHH
Confidence 4679999999999999999999999999999988873 444555555555443
No 105
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=42.38 E-value=21 Score=32.32 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=47.8
Q ss_pred EEechhhhhhhcCCCC--chhhHhhccccceEEEEee-C--C--------eEEEecCChhHHHHHHHHHHHh
Q 026458 160 FETSTGLSRMLLSSPT--CPVLEELGKQLSFEIAVGL-N--G--------RVWVNAESPSTVVLVSNAIMNS 218 (238)
Q Consensus 160 ~~V~~~~v~rl~~~~~--~~~l~~l~~~~~~ei~vG~-N--G--------~IWi~~~~~~~~~~i~~~i~~~ 218 (238)
+.|++.+.+.++|++| + =++.|.++|+|.|=+=- | + .|.|++ .++++..+-.+|+.+
T Consensus 34 v~Ip~~~Hs~IIGkgG~~s-NIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG-~~enVE~AR~~I~~l 103 (376)
T 3n89_A 34 MEFESQYYSLMTSDNGDHE-NVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITG-YFGDVDRARMLMRRN 103 (376)
T ss_dssp EECCGGGHHHHHSCCSSSC-SHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEE-EHHHHHHHHHHHHHS
T ss_pred EEEchhhhhhhccCCChHH-HHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEc-CHHHHHHHHHHHHhc
Confidence 6789999999999999 8 78889999999998832 3 2 499998 888888888888874
No 106
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=41.07 E-value=3 Score=41.33 Aligned_cols=49 Identities=8% Similarity=0.218 Sum_probs=18.8
Q ss_pred EEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCChhHH
Q 026458 159 MFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTV 208 (238)
Q Consensus 159 ~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~ 208 (238)
.++|||.+++.+||..+. +++.|.+.++..|=++..|.|.|...+....
T Consensus 601 ~~~I~~~ki~~vIG~gGk-~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~ 649 (757)
T 1e3p_A 601 TVKIPVDKIGEVIGPKRQ-MINQIQEDTGAEITIEDDGTIYIGAADGPAA 649 (757)
T ss_dssp CC-------------------CTTCCCCCSCC--------CCCBSSHHHH
T ss_pred EEEEChHHeehcccccce-eeehhhHhhCCEEEecCCceEEEecCCHHHH
Confidence 589999999999998887 8999988999999999999999999776443
No 107
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=40.80 E-value=69 Score=26.92 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=40.9
Q ss_pred cccceEEEEeeCCeEEEecCChhHHHHHHHHHHHhcc------CCHHHHHHHHHHHHh
Q 026458 184 KQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSES------LSAVQQKIMVDKLLQ 235 (238)
Q Consensus 184 ~~~~~ei~vG~NG~IWi~~~~~~~~~~i~~~i~~~e~------lt~~~~~~~~~~~~~ 235 (238)
+..+++|.=|+||.++|=+.+.+++.=..+++.+... +..++-++-+++.+.
T Consensus 15 ~~~p~~il~grd~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~~~~~~~~~i~~~l~ 72 (227)
T 3gr1_A 15 EKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARVINENEENKRISIWLD 72 (227)
T ss_dssp CSCSCEEEECTTSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEECHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCcEEEEEccccHHHHHHHHHHhcCCcCCeEEEehHHHHHHHHHHHH
Confidence 4679999999999999999999999999999988873 343555554454443
No 108
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=37.48 E-value=61 Score=25.42 Aligned_cols=46 Identities=11% Similarity=-0.037 Sum_probs=32.2
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecCC
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAES 204 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~ 204 (238)
..+-++..-+-+.+.++..++++-|..+++..--+. |||.+|++.=
T Consensus 43 KTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~~ 88 (148)
T 2d74_B 43 KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-GRRVVLQGRF 88 (148)
T ss_dssp EEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-TTEEEESSCC
T ss_pred eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-CCEEEEEeee
Confidence 345566666666677777777776666666666666 9999999843
No 109
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=32.72 E-value=67 Score=24.55 Aligned_cols=36 Identities=6% Similarity=0.158 Sum_probs=30.6
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccce-EEEEee
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSF-EIAVGL 194 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~-ei~vG~ 194 (238)
.-+.||...+.+++|+.+. -++.+.+.+++ .|-|-.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~-nIr~i~~~tG~~~I~i~~ 105 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGK-LIQEIVDKSGVVRVRIEA 105 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGH-HHHHHHHHHTCSEEEEEE
T ss_pred EEEEECHHHcCeeECCCCH-HHHHHHHHHCCEEEEEcC
Confidence 6788999999999999997 88889888886 776653
No 110
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=31.86 E-value=30 Score=28.71 Aligned_cols=82 Identities=9% Similarity=0.121 Sum_probs=48.0
Q ss_pred EEEEEecCCCCcceEEEecCCCccCCCccc-CCeeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecC
Q 026458 125 YVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAE 203 (238)
Q Consensus 125 ~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L-~~G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~ 203 (238)
.|+|..-.+.-+++++..- ++-|.- ..-.-++....+. -+||++|+++-.|++.|-.+|-+||+..
T Consensus 5 ~a~v~R~T~ET~I~v~l~L-----DG~g~~~~~~~~i~TGigFl--------DHML~~la~Hg~~dL~v~a~GDl~iD~H 71 (202)
T 1rhy_A 5 IASVERTTSETHISCTIDL-----DHIPGVTEQKINVSTGIGFL--------DHMFTALAKHGGMSLQLQCKGDLHIDDH 71 (202)
T ss_dssp EEEEEEECSSCEEEEEEES-----CCCTTTCCCCEEEECSCHHH--------HHHHHHHHHHTTCEEEEEEESCC-----
T ss_pred eEEEEecCCceEEEEEEEe-----CCCCCcccceeeeeCCCcHH--------HHHHHHHHHHcCCceEEEEecCCccccC
Confidence 4677776666667777653 333311 0011233333331 2599999999999999999999999863
Q ss_pred -Ch-hHHHHHHHHHHHhc
Q 026458 204 -SP-STVVLVSNAIMNSE 219 (238)
Q Consensus 204 -~~-~~~~~i~~~i~~~e 219 (238)
+. .-.+.+.+|+++.-
T Consensus 72 HtvED~gI~LG~Al~~AL 89 (202)
T 1rhy_A 72 HTAEDCALALGEAFKKAL 89 (202)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred ccHHHhhhhHHHHHHHHh
Confidence 22 33466778877653
No 111
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=30.53 E-value=27 Score=26.70 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=26.8
Q ss_pred eeEeEEe------cCCeEEEEccC-CccCCCCCCEEEEEEEEec
Q 026458 50 AGKLRFS------KPNKYWVESSQ-KRYVPCVEDTVLGIVVDCK 86 (238)
Q Consensus 50 ~G~v~~~------~~~~i~V~~~~-~~Y~P~vGDiVIG~V~~v~ 86 (238)
+|.|+.+ .++-++|-|.. ++|--+.||.|.|+|..-.
T Consensus 62 ~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr~~~ 105 (130)
T 1a62_A 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPK 105 (130)
T ss_dssp CEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEECCC
T ss_pred eEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEeCCC
Confidence 4666654 13467888764 5788999999999998643
No 112
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=29.70 E-value=19 Score=25.87 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.3
Q ss_pred cccCcCCCCEEEEEEEec
Q 026458 114 NIPKFEIGSLLYVRVVKA 131 (238)
Q Consensus 114 ~r~~l~~GDlV~ArV~~~ 131 (238)
|...|++||||.|++...
T Consensus 2 ~p~~f~~GdlVwaK~~g~ 19 (94)
T 3qby_A 2 MPHAFKPGDLVFAKMKGY 19 (94)
T ss_dssp CCCCCCTTCEEEECCTTS
T ss_pred CCCcCccCCEEEEecCCC
Confidence 345789999999999653
No 113
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=29.57 E-value=17 Score=28.40 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=15.5
Q ss_pred cccccCcCCCCEEEEEEEe
Q 026458 112 RRNIPKFEIGSLLYVRVVK 130 (238)
Q Consensus 112 k~~r~~l~~GDlV~ArV~~ 130 (238)
..|...|++||||.|++..
T Consensus 17 ~~~~~~f~~GdlVwaK~~g 35 (153)
T 4fu6_A 17 QGMTRDFKPGDLIFAKMKG 35 (153)
T ss_dssp TCSGGGCCTTCEEEECCTT
T ss_pred hhcccCCCCCCEEEEeCCC
Confidence 4566679999999999865
No 114
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=28.23 E-value=65 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=27.9
Q ss_pred CCCCCEEEEEEEEecCc--eEEEEecCCeeeeecC
Q 026458 72 PCVEDTVLGIVVDCKAD--NFFVDIRGPTIAFLPV 104 (238)
Q Consensus 72 P~vGDiVIG~V~~v~~~--~~~VdI~~~~~a~L~~ 104 (238)
-++||+|.++|.++..+ .+.+.+.....|.+..
T Consensus 136 l~~GD~V~akVisi~~~~~~i~LS~k~~~lGVv~A 170 (209)
T 2nn6_I 136 FRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVA 170 (209)
T ss_dssp CCSSSEEEEEEEEEETTTTEEEEECCSSSCEECCC
T ss_pred cCCCCEEEEEEEEEeCCCCeEEEEEecCCCcEEEE
Confidence 47999999999999764 6889998888888764
No 115
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=28.19 E-value=97 Score=20.97 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=28.5
Q ss_pred cccCcCCCCEEEEEEEecCCCCcc--eEEEecCCCccCCCccc-CCeeEEEechhhhhhhc
Q 026458 114 NIPKFEIGSLLYVRVVKANPGMNP--ELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLL 171 (238)
Q Consensus 114 ~r~~l~~GDlV~ArV~~~~~~~~~--~Ls~~~~~~~~~~~G~L-~~G~~~~V~~~~v~rl~ 171 (238)
|-+.|.+||-|.||= ++..-| .++....+ ..|-+. .+|..-.|....++.+-
T Consensus 3 ~~~~~~vGd~vmArW---~D~~yYpA~I~si~~~---~~Y~V~F~dG~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW---SDCRFYPAKVTAVNKD---GTYTVKFYDGVVQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC---TTSCEEEEEEEEECTT---SEEEEEETTSCEEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc---CCCCEeeEEEEEECCC---CeEEEEEeCCceEEEeHHHcccCC
Confidence 567899999999984 222222 23333311 112222 45777788777777654
No 116
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=27.68 E-value=1.3e+02 Score=19.64 Aligned_cols=22 Identities=23% Similarity=0.066 Sum_probs=18.8
Q ss_pred CCCCEEEEEEEEecCceEEEEe
Q 026458 73 CVEDTVLGIVVDCKADNFFVDI 94 (238)
Q Consensus 73 ~vGDiVIG~V~~v~~~~~~VdI 94 (238)
-+||.|-.+|+.+..+++.-++
T Consensus 45 lPGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 45 KVGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEE
Confidence 4699999999999999887654
No 117
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.66 E-value=1.3e+02 Score=23.85 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=36.9
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEe-eCCeEEEecCC
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG-LNGRVWVNAES 204 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG-~NG~IWi~~~~ 204 (238)
..+-++..-+-+.|.++..|+++-|..+++..--+. -|||.+|++.-
T Consensus 40 KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G~~ 87 (157)
T 2e9h_A 40 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSH 87 (157)
T ss_dssp EEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEBCC
T ss_pred EEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeee
Confidence 355667777777778888888888888888888887 69999999953
No 118
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=27.42 E-value=1.1e+02 Score=24.95 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=46.3
Q ss_pred eEEEechhhhhhhcCCCCchhhHhhccccceEEEEe-eCCeEEEec----CChhHHHHHHHHHHHh
Q 026458 158 YMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVG-LNGRVWVNA----ESPSTVVLVSNAIMNS 218 (238)
Q Consensus 158 ~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG-~NG~IWi~~----~~~~~~~~i~~~i~~~ 218 (238)
+-+.||+..+.-|+|+.+. +++.|.+++++.+-+- .+|.|=|++ .|+.....+...|+.+
T Consensus 6 ~~i~VP~~rvg~liGk~g~-~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai 70 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGE-VKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAI 70 (191)
T ss_dssp EEEECCGGGHHHHHCGGGH-HHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHh-HHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999998887 8899988888888776 568888883 4666666666666543
No 119
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=27.26 E-value=71 Score=23.91 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=14.1
Q ss_pred cceEEEEeeCC-eEEEecCC
Q 026458 186 LSFEIAVGLNG-RVWVNAES 204 (238)
Q Consensus 186 ~~~ei~vG~NG-~IWi~~~~ 204 (238)
+.-=.|+|++| -+|-.+++
T Consensus 17 ~~~aAI~g~dG~svwA~s~g 36 (127)
T 3d9y_A 17 IDRAAIVSRAGDSVWAASAG 36 (127)
T ss_dssp CCEEEEEETTSSCEEEECTT
T ss_pred eeeEEEEeCCCCeEEEeCCC
Confidence 34446789999 69998764
No 120
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=26.15 E-value=1.4e+02 Score=19.64 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=18.5
Q ss_pred CCCCEEEEEEEEecCceEEEEe
Q 026458 73 CVEDTVLGIVVDCKADNFFVDI 94 (238)
Q Consensus 73 ~vGDiVIG~V~~v~~~~~~VdI 94 (238)
-+||.|-.+|+.+..+++.-++
T Consensus 47 lPGE~V~v~i~k~kk~~~~a~~ 68 (70)
T 1yvc_A 47 EKGSVINVKVTAVKEKFAFAER 68 (70)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEeeCCeEEEEE
Confidence 4699999999999998886554
No 121
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=26.13 E-value=1.4e+02 Score=20.52 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=26.5
Q ss_pred EEEEEEecCceEEEEecCCe-eeeecCcccCCcccccccCcCCCCEEEEEE
Q 026458 79 LGIVVDCKADNFFVDIRGPT-IAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128 (238)
Q Consensus 79 IG~V~~v~~~~~~VdI~~~~-~a~L~~~~f~gatk~~r~~l~~GDlV~ArV 128 (238)
=|+|+++.++.+.||.+... ...+.+. +...+||+|.--+
T Consensus 6 P~kVvei~~~~A~vd~~Gv~r~V~l~Lv----------~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 6 PGKVIEVNGPVAVVDFGGVKREVRLDLM----------PDTKPGDWVIVHT 46 (75)
T ss_dssp CEEEEEEETTEEEEEETTEEEEEECTTS----------TTCCTTCEEEEET
T ss_pred cEEEEEECCCEEEEEcCCEEEEEEEEEe----------CCCCCCCEEEEec
Confidence 37888997788999987643 3334322 2357899987543
No 122
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=25.82 E-value=1.5e+02 Score=21.17 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=35.5
Q ss_pred eeEEEechhhhhhhcCCCCchhhHhhccccceEEEE--eeCCeEEEecC--ChhHHHHHHHHHHHhcc
Q 026458 157 GYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAV--GLNGRVWVNAE--SPSTVVLVSNAIMNSES 220 (238)
Q Consensus 157 G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~v--G~NG~IWi~~~--~~~~~~~i~~~i~~~e~ 220 (238)
++++.+.|..... +.+.|.+--++|+.. +..|+|-+..+ +.+......+.|+.++.
T Consensus 9 slvV~~~p~~~~~--------V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~I~~i~G 68 (95)
T 2jsx_A 9 SLVVQAKSERISD--------ISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESVRNVEG 68 (95)
T ss_dssp EEEEEECTTSHHH--------HHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHTTSTT
T ss_pred EEEEEECCCCHHH--------HHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHHHhcCCC
Confidence 5678888887654 455666667889854 46899988763 44444444444444443
No 123
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=24.93 E-value=24 Score=29.61 Aligned_cols=76 Identities=9% Similarity=0.149 Sum_probs=44.4
Q ss_pred EEEEEecCCCCcceEEEecCCCccCCCcccCCeeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecC-
Q 026458 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAE- 203 (238)
Q Consensus 125 ~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~- 203 (238)
.|+|..-.+.-++.++..- + -| -.-++....+. -+||.+|+++-.|++.|-.+|-+||+..
T Consensus 31 ~a~v~R~T~ET~I~v~l~L-----D-~G----~~~i~TGigFl--------DHML~~la~Hg~~dL~v~a~GDl~iD~HH 92 (221)
T 2ae8_A 31 IYQKQRNTAETQLNISISD-----D-QS----PSHINTGVGFL--------NHMLTLFTFHSGLSLNIEAQGDIDVDDHH 92 (221)
T ss_dssp EEEEEC----CEEEEEEES-----S-CC----CCEEECSCHHH--------HHHHHHHHHHHCCEEEEEEECC----HHH
T ss_pred eEEEEEeCCcEEEEEEEEe-----C-CC----cceecCCCcHH--------HHHHHHHHHHcCCceEEEEeeCCcccCCc
Confidence 7888877666667777643 1 12 22334433332 2599999999999999999999999863
Q ss_pred Chh-HHHHHHHHHHHh
Q 026458 204 SPS-TVVLVSNAIMNS 218 (238)
Q Consensus 204 ~~~-~~~~i~~~i~~~ 218 (238)
+.+ -.+.+.+|+++.
T Consensus 93 TvEDvgI~LGqAl~~A 108 (221)
T 2ae8_A 93 VTEDIGIVIGQLLLEM 108 (221)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHhHHHHHHHHH
Confidence 222 245667777764
No 124
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=24.26 E-value=1.1e+02 Score=26.00 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=19.8
Q ss_pred ecCcccCCcccccccCc-CCCCEEEEE---EEecCCCCcceEE
Q 026458 102 LPVLAFEGGTRRNIPKF-EIGSLLYVR---VVKANPGMNPELS 140 (238)
Q Consensus 102 L~~~~f~gatk~~r~~l-~~GDlV~Ar---V~~~~~~~~~~Ls 140 (238)
|.+.-|. ..+..-|.+ .+||+|+.+ |.+.+ +.+.+.
T Consensus 52 l~v~iF~-~~~~~LP~v~~~GDII~l~~vki~~~~--g~~~~v 91 (294)
T 1xjv_A 52 LTCLLFS-GNYEALPIIYKNGDIVRFHRLKIQVYK--KETQGI 91 (294)
T ss_dssp EEEEEEE-SSGGGSCCCCSTTCEEEEEEEEEEEET--TEEEEE
T ss_pred EEEEEEC-CChHHCCCCCCCCCEEEEEEEEEEEEC--CeEEEE
Confidence 4444443 223344544 999999866 66553 334443
No 125
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=24.14 E-value=74 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEeeCCeEEEecCC----hhHHHHHHHHHH
Q 026458 189 EIAVGLNGRVWVNAES----PSTVVLVSNAIM 216 (238)
Q Consensus 189 ei~vG~NG~IWi~~~~----~~~~~~i~~~i~ 216 (238)
=.|+|.+|-+|-.+++ +++...++++++
T Consensus 19 aAIig~dGsvwA~s~~f~~~~~E~~~i~~~f~ 50 (125)
T 1acf_A 19 AAILGLDGNTWATSAGFAVTPAQGTTLAGAFN 50 (125)
T ss_dssp EEEEETTSCEEEECTTCCCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEecCCCccCHHHHHHHHHHhc
Confidence 3589999999999754 444444444443
No 126
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=23.92 E-value=73 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.444 Sum_probs=24.1
Q ss_pred cccCcCCCCEEEEEEEe----cCCCCcceEEEecCCCccCCCcccCCeeEE
Q 026458 114 NIPKFEIGSLLYVRVVK----ANPGMNPELSCTDASGKAAEFGLLKDGYMF 160 (238)
Q Consensus 114 ~r~~l~~GDlV~ArV~~----~~~~~~~~Ls~~~~~~~~~~~G~L~~G~~~ 160 (238)
|...|++||++..+=.. .++....+++++. .|+- .+|+++
T Consensus 34 nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~------d~~~-~~gyvv 77 (83)
T 3iuw_A 34 NDRNFQVGDILILEEYMNGMYLDDECEAEVIYIT------DYAQ-REGYVV 77 (83)
T ss_dssp CCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEEE------CTTC-CTTEEE
T ss_pred cccCCCCCCEEEEEEccCCCccCcEEEEEEEEEc------ccCC-CCCEEE
Confidence 33459999999876442 2333344677764 4444 677654
No 127
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=23.47 E-value=47 Score=24.19 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=13.2
Q ss_pred ccCcCCCCEEEEEEEe
Q 026458 115 IPKFEIGSLLYVRVVK 130 (238)
Q Consensus 115 r~~l~~GDlV~ArV~~ 130 (238)
...|.+||+|.|++..
T Consensus 4 ~~~~~~GdlVwaK~~g 19 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSG 19 (109)
T ss_dssp CCCCCTTCEEEEEETT
T ss_pred cccCCCCCEEEEEeCC
Confidence 4578999999999954
No 128
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=22.96 E-value=68 Score=26.65 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=51.6
Q ss_pred EEEEEecCCCCcceEEEecCCCccCCCcccCCeeEEEechhhhhhhcCCCCchhhHhhccccceEEEEeeCCeEEEecC-
Q 026458 125 YVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAE- 203 (238)
Q Consensus 125 ~ArV~~~~~~~~~~Ls~~~~~~~~~~~G~L~~G~~~~V~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~- 203 (238)
.|+|..-.+.-+++++..- ++-|+. -++....+. -+||++|.++-.|++.|-.+|-+||...
T Consensus 12 ~a~v~R~T~ET~I~v~l~L-----DG~G~~----~i~TGigFl--------DHML~~~a~Hg~~dL~v~a~GDl~iD~HH 74 (207)
T 2f1d_A 12 IGEVKRVTKETNVSVKINL-----DGTGVA----DSSSGIPFL--------DHMLDQLASHGLFDVHVRATGDVHIDDHH 74 (207)
T ss_dssp EEEEEEECSSCEEEEEEET-----TCCCCE----EEECSCHHH--------HHHHHHHHHHHTCEEEEEEECCTTTCSHH
T ss_pred eEEEEEcCCcEEEEEEEEe-----CCCCce----eeeCCChHH--------HHHHHHHHHHcCCceEEEEecCccccCCC
Confidence 5777777766777777653 333421 233333332 2599999999999999999999999863
Q ss_pred Chh-HHHHHHHHHHHh
Q 026458 204 SPS-TVVLVSNAIMNS 218 (238)
Q Consensus 204 ~~~-~~~~i~~~i~~~ 218 (238)
+.+ -.+.+.+|+++.
T Consensus 75 tvEDvgI~LG~Al~~A 90 (207)
T 2f1d_A 75 TNEDIALAIGTALLKA 90 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHH
Confidence 222 245667777764
No 129
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=22.82 E-value=87 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.2
Q ss_pred CCCCCCEEEEEEEEecCc-eEEEEecCCeeeee
Q 026458 71 VPCVEDTVLGIVVDCKAD-NFFVDIRGPTIAFL 102 (238)
Q Consensus 71 ~P~vGDiVIG~V~~v~~~-~~~VdI~~~~~a~L 102 (238)
.-++||+|.++|.++..+ .+.+.+..+..+.|
T Consensus 114 ~l~~GD~V~a~Vi~v~~~~~i~LS~k~~~lG~l 146 (235)
T 2z0s_A 114 LLKVGDYIKAKVVAFDKTRSPLLTVQGEGLGRI 146 (235)
T ss_dssp SSCTTCEEEEEEEEECTTSCEEEECCSSSCEEC
T ss_pred cCCCCCEEEEEEEEECCCCcEEEEEecccCccc
Confidence 468999999999999865 46666555544433
No 130
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=22.71 E-value=41 Score=24.80 Aligned_cols=16 Identities=13% Similarity=0.490 Sum_probs=13.1
Q ss_pred ccCcCCCCEEEEEEEe
Q 026458 115 IPKFEIGSLLYVRVVK 130 (238)
Q Consensus 115 r~~l~~GDlV~ArV~~ 130 (238)
...|++||+|.|++..
T Consensus 17 ~~~~~~GdlVwaK~kG 32 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKG 32 (110)
T ss_dssp SSSCCTTCEEEEEETT
T ss_pred cCCCCCCCEEEEEeCC
Confidence 3468999999999854
No 131
>1r77_A Cell WALL targeting domain of glycylglycine endopeptidase ALE-1; SH3B domain, lysostaphin, peptidoglycan hydrolase; 1.75A {Staphylococcus capitis}
Probab=22.08 E-value=60 Score=23.96 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=17.0
Q ss_pred cccceEEEEeeCCeEEEecC
Q 026458 184 KQLSFEIAVGLNGRVWVNAE 203 (238)
Q Consensus 184 ~~~~~ei~vG~NG~IWi~~~ 203 (238)
+.+.++=.+=++|++||+-.
T Consensus 55 ~~V~YD~v~~~DGyvWIsy~ 74 (103)
T 1r77_A 55 LTIKYDEVMKQDGHVWVGYN 74 (103)
T ss_dssp CEEEEEEEEEETTEEEEEEE
T ss_pred CEEECCEEEecCCcEEEEEE
Confidence 46899999999999999753
No 132
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=21.81 E-value=30 Score=25.44 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=13.2
Q ss_pred cCcCCCCEEEEEEEec
Q 026458 116 PKFEIGSLLYVRVVKA 131 (238)
Q Consensus 116 ~~l~~GDlV~ArV~~~ 131 (238)
..|++||+|.|+|...
T Consensus 4 ~~~~~GdlVwaK~~gy 19 (108)
T 2l89_A 4 DRLNFGDRILVKAPGY 19 (108)
T ss_dssp CCCCTTEEEEEECSSS
T ss_pred CcccCCCEEEEEeCCc
Confidence 3689999999999754
No 133
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=21.28 E-value=2.3e+02 Score=20.12 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=36.9
Q ss_pred CCCEEEEEEEEecC--ceEEEEe-cCCeeeeecCcccCCcccccccCcCCCCEEEEEEEecCC
Q 026458 74 VEDTVLGIVVDCKA--DNFFVDI-RGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANP 133 (238)
Q Consensus 74 vGDiVIG~V~~v~~--~~~~VdI-~~~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~~~~~ 133 (238)
.++.+-|+|...+. .+=.++- ....+..+|++++....- ....+.+|+.|..+|..+.+
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~-~~~~l~~Ge~V~g~V~~i~~ 74 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAA-VRGNPQQGDRVEGKIKSITD 74 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSC-CCCCCCTTCEEEEEEEECCS
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCc-cccCCCCCCEEEEEEEEeCC
Confidence 46778899987632 2223333 345788899888753210 01468999999999998754
No 134
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=20.91 E-value=1.1e+02 Score=23.74 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.1
Q ss_pred CCCCCCEEE-----EEEEEecCceEEEEecCCe
Q 026458 71 VPCVEDTVL-----GIVVDCKADNFFVDIRGPT 98 (238)
Q Consensus 71 ~P~vGDiVI-----G~V~~v~~~~~~VdI~~~~ 98 (238)
.|++|+.+. |+|+++..+...||-|-|.
T Consensus 102 ~~~~G~~~~~~~~~~~V~~v~~~~V~vD~NHPL 134 (157)
T 3pr9_A 102 KPIKGLTITIDGIPGKIVSINSGRVLVDFNHEL 134 (157)
T ss_dssp CCCTTCEEEETTEEEEEEEEETTEEEEECSCTT
T ss_pred CcCCCcEEEecCCCeEEEEEcCCEEEEECCCcc
Confidence 478888775 8999999999999998764
No 135
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=20.83 E-value=24 Score=23.88 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=31.3
Q ss_pred EEEEEEEecC-ceEEEEecC--CeeeeecCcccCCcccccccCcCCCCEEEEEEE
Q 026458 78 VLGIVVDCKA-DNFFVDIRG--PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVV 129 (238)
Q Consensus 78 VIG~V~~v~~-~~~~VdI~~--~~~a~L~~~~f~gatk~~r~~l~~GDlV~ArV~ 129 (238)
+.|+|+...+ .+|.|.... .+.+. .+|..++++-...+||.|..++.
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~-----i~Gk~Rk~~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLDSGPEILAY-----ISGKMRMHYIRILPGDRVVVEIT 58 (71)
T ss_dssp CEEECCCCCTTTBCCCEESSSCBCCCE-----ECHHHHHTCCCCCTTCEEEEECC
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEE-----EcceEeccCcCCCCCCEEEEEEE
Confidence 4799998877 888887632 12222 34555555666779999987754
No 136
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=20.59 E-value=49 Score=25.35 Aligned_cols=17 Identities=29% Similarity=0.899 Sum_probs=12.8
Q ss_pred ceEEEEeeCCeEEEecCChh
Q 026458 187 SFEIAVGLNGRVWVNAESPS 206 (238)
Q Consensus 187 ~~ei~vG~NG~IWi~~~~~~ 206 (238)
.++|. ||.|||.....+
T Consensus 75 HldIk---dgKIWIq~D~TE 91 (126)
T 2nvm_A 75 YLQIQ---NGKIWIEEDSTN 91 (126)
T ss_dssp EEEEE---TTEEEEEECSST
T ss_pred EEEEe---CCeEEEEeCCch
Confidence 45565 999999987664
No 137
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.45 E-value=1.6e+02 Score=23.17 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=25.2
Q ss_pred EeeEeEEecCCeEEEEccCCccCCC----CCCEEEEEEEEec
Q 026458 49 KAGKLRFSKPNKYWVESSQKRYVPC----VEDTVLGIVVDCK 86 (238)
Q Consensus 49 ~~G~v~~~~~~~i~V~~~~~~Y~P~----vGDiVIG~V~~v~ 86 (238)
.+..+..+ ++.+++.|....|-|- ..-.|+|+|+.+-
T Consensus 153 ~vKr~~~~-~~~~~L~~~N~~y~~i~i~~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 153 TLAKFYQR-GDTVELRPANREMSSMFFRAEKVKILGKVVGVF 193 (196)
T ss_dssp EEEEEEEE-TTEEEEECSCTTSCCEEEEGGGCEEEEEEEEEE
T ss_pred EEEEEEEE-CCEEEEEECCCCCCCEEecCCCEEEEEEEEEEE
Confidence 34455554 6688999987777553 3447899998764
Done!