Your job contains 1 sequence.
>026460
MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR
AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK
EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACV
DVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTTLQIR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026460
(238 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2082563 - symbol:PrfB3 "peptide chain release ... 618 2.4e-60 1
TAIR|locus:2158936 - symbol:HCF109 "high chlorophyll fluo... 397 6.3e-37 1
TIGR_CMR|CHY_0163 - symbol:CHY_0163 "peptide chain releas... 287 2.9e-25 1
UNIPROTKB|Q3Z8Y6 - symbol:prfB "Peptide chain release fac... 277 3.3e-24 1
TIGR_CMR|DET_0570 - symbol:DET_0570 "peptide chain releas... 277 3.3e-24 1
UNIPROTKB|P66026 - symbol:prfB "Peptide chain release fac... 272 1.1e-23 1
TIGR_CMR|GSU_2278 - symbol:GSU_2278 "peptide chain releas... 271 1.4e-23 1
UNIPROTKB|P07012 - symbol:prfB species:83333 "Escherichia... 262 1.3e-22 1
TAIR|locus:2010748 - symbol:AT1G56350 species:3702 "Arabi... 261 6.2e-22 1
TIGR_CMR|SPO_2585 - symbol:SPO_2585 "peptide chain releas... 245 1.0e-20 1
TIGR_CMR|ECH_0705 - symbol:ECH_0705 "peptide chain releas... 208 1.7e-16 1
TIGR_CMR|CJE_1628 - symbol:CJE_1628 "peptide chain releas... 201 1.0e-15 1
TIGR_CMR|APH_0479 - symbol:APH_0479 "peptide chain releas... 197 3.2e-15 1
TIGR_CMR|NSE_0604 - symbol:NSE_0604 "peptide chain releas... 190 1.7e-14 1
TIGR_CMR|CPS_3552 - symbol:CPS_3552 "peptide chain releas... 189 2.2e-14 1
UNIPROTKB|Q9KQ25 - symbol:prfA "Peptide chain release fac... 187 3.7e-14 1
TIGR_CMR|VC_2179 - symbol:VC_2179 "peptide chain release ... 187 3.7e-14 1
DICTYBASE|DDB_G0288835 - symbol:prfB "class I peptide cha... 177 7.1e-13 1
TIGR_CMR|BA_5572 - symbol:BA_5572 "peptide chain release ... 163 2.7e-10 1
TIGR_CMR|CHY_2563 - symbol:CHY_2563 "peptide chain releas... 162 3.7e-10 1
TIGR_CMR|DET_1210 - symbol:DET_1210 "peptide chain releas... 158 1.3e-09 1
TIGR_CMR|SO_3833 - symbol:SO_3833 "peptide chain release ... 157 1.9e-09 1
TAIR|locus:2041409 - symbol:AT2G47020 species:3702 "Arabi... 156 3.4e-09 1
UNIPROTKB|P0A7I0 - symbol:prfA "peptide chain release fac... 154 4.6e-09 1
TIGR_CMR|APH_0420 - symbol:APH_0420 "peptide chain releas... 153 6.1e-09 1
TIGR_CMR|CBU_1965 - symbol:CBU_1965 "peptide chain releas... 152 8.3e-09 1
TIGR_CMR|NSE_0406 - symbol:NSE_0406 "peptide chain releas... 147 3.7e-08 1
DICTYBASE|DDB_G0283175 - symbol:prfA "peptide chain relea... 147 5.1e-08 1
TIGR_CMR|GSU_3104 - symbol:GSU_3104 "peptide chain releas... 145 6.2e-08 1
TIGR_CMR|ECH_0597 - symbol:ECH_0597 "peptide chain releas... 140 2.6e-07 1
TIGR_CMR|CJE_1784 - symbol:CJE_1784 "peptide chain releas... 135 1.0e-06 1
TAIR|locus:2099137 - symbol:APG3 "AT3G62910" species:3702... 136 1.1e-06 1
TIGR_CMR|SPO_2461 - symbol:SPO_2461 "peptide chain releas... 133 1.7e-06 1
UNIPROTKB|P66016 - symbol:prfA "Peptide chain release fac... 130 4.1e-06 1
POMBASE|SPAC2F7.17 - symbol:SPAC2F7.17 "mitochondrial pep... 128 8.6e-06 1
FB|FBgn0032486 - symbol:CG5705 species:7227 "Drosophila m... 116 0.00021 1
SGD|S000003111 - symbol:MRF1 "Mitochondrial translation r... 114 0.00039 1
>TAIR|locus:2082563 [details] [associations]
symbol:PrfB3 "peptide chain release factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003747 "translation
release factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006415 "translational termination"
evidence=IEA;ISS] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009772 "photosynthetic electron transport in
photosystem II" evidence=IMP] [GO:0010190 "cytochrome b6f complex
assembly" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=IMP] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0009570 EMBL:CP002686
GO:GO:0043565 Gene3D:3.30.160.20 GO:GO:0009658 GO:GO:0048255
GO:GO:0003730 GO:GO:0009772 GO:GO:0016149 GO:GO:0010190
IPI:IPI00516531 RefSeq:NP_191278.2 UniGene:At.34857
ProteinModelPortal:F4J264 SMR:F4J264 EnsemblPlants:AT3G57190.1
GeneID:824886 KEGG:ath:AT3G57190 OMA:DIIPLFL Uniprot:F4J264
Length = 406
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 123/234 (52%), Positives = 164/234 (70%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA++
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERL 202
Query: 122 GYRGRVVDKCCC--KNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLAC 179
G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E A
Sbjct: 203 GQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLII---SSTSNEECSAT 259
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ ++ +
Sbjct: 260 VDIIPLFLRASPDFEVKEGDLIVSYPAK--EDHKIAENMVCIHHIPSGVTLQSS 311
>TAIR|locus:2158936 [details] [associations]
symbol:HCF109 "high chlorophyll fluorescent 109"
species:3702 "Arabidopsis thaliana" [GO:0003747 "translation
release factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006415 "translational termination"
evidence=IEA;ISS;IMP] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006396 "RNA processing" evidence=IMP] [GO:0009657 "plastid
organization" evidence=IMP] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 EMBL:CP002688 GO:GO:0009570
Gene3D:3.30.160.20 GO:GO:0006396 GO:GO:0009657 GO:GO:0006415
GO:GO:0016149 EMBL:AB018112 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 HSSP:P07012
UniGene:At.9505 EMBL:AY056234 EMBL:AY117253 EMBL:AY084711
IPI:IPI00546331 RefSeq:NP_851096.1 ProteinModelPortal:Q9LVY0
SMR:Q9LVY0 STRING:Q9LVY0 PRIDE:Q9LVY0 EnsemblPlants:AT5G36170.1
GeneID:833614 KEGG:ath:AT5G36170 TAIR:At5g36170 InParanoid:Q9LVY0
OMA:MGWGSQI PhylomeDB:Q9LVY0 ProtClustDB:CLSN2680355
ArrayExpress:Q9LVY0 Genevestigator:Q9LVY0 Uniprot:Q9LVY0
Length = 456
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 90/234 (38%), Positives = 138/234 (58%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 122 SFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGI 181
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+ Y+
Sbjct: 182 IKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYK 241
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FP-NGSFPHEATLACVDV 182
+VV+ + G+KSAT+E E YA+GY+SGE G H ++ P N + + + V+V
Sbjct: 242 TKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 301
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGER-QSIAK--PAACIQHIPTGIAVRGT 233
+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AVR T
Sbjct: 302 MPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCT 355
>TIGR_CMR|CHY_0163 [details] [associations]
symbol:CHY_0163 "peptide chain release factor 2,
programmed frameshift" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003747 "translation release factor
activity" evidence=ISS] [GO:0006415 "translational termination"
evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:3.30.160.20
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_359035.1 ProteinModelPortal:Q3AFP9 STRING:Q3AFP9
GeneID:3727359 KEGG:chy:CHY_0163 PATRIC:21273511 Uniprot:Q3AFP9
Length = 371
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 72/230 (31%), Positives = 114/230 (49%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ T++ + L +L + ++L EE ++ QL E E + L A +
Sbjct: 43 DFWDNYTEAQKTLKELNRLKDDIEKYEELLKAQEELTVLLQLLEEEENEE-LAVEAQDKA 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L + E+ LL GP D A V++ AG+ G + W E L MY RWA+ +GY+
Sbjct: 102 KKLMEKLHRMEIELLLSGPYDKNSAIVSLHAGAGGTEAQDWVEMLYRMYTRWAEDKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP--HEATLACVDVV 183
++D+ + G+KS T E A+GYL E G H LI F + A VDV+
Sbjct: 162 ELIDRLLGEEAGLKSVTFSVEGFGAYGYLKAERGVHRLIRISPFDFSGRRHTSFASVDVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E P++++ +E+L F S G+ + + A I H+PTGI V
Sbjct: 222 PEVAEDIPEIELKEEELKIETFRSGGAGGQHVNKTESAVRITHLPTGITV 271
>UNIPROTKB|Q3Z8Y6 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG1186 GO:GO:0003747
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:YP_181313.1
ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6 GeneID:3230122
KEGG:det:DET0570 PATRIC:21608209 ProtClustDB:CLSK837416
Uniprot:Q3Z8Y6
Length = 362
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 70/234 (29%), Positives = 113/234 (48%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + + + KLA + +V + L + + + +L + D L R
Sbjct: 39 DFWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVND---LLELFALTHEDPSLGNEIEREV 95
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 155
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLACVDVV 183
V+D+ + G+KSAT++ E EYA+G+L E G H LI H + A V+V+
Sbjct: 156 EVLDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEVM 215
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E S D+ I ED+ +F S G+ A + HIP+GI V T
Sbjct: 216 PE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQT 268
>TIGR_CMR|DET_0570 [details] [associations]
symbol:DET_0570 "peptide chain release factor 2,
programmed frameshift" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1186
GO:GO:0003747 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_181313.1 ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6
GeneID:3230122 KEGG:det:DET0570 PATRIC:21608209
ProtClustDB:CLSK837416 Uniprot:Q3Z8Y6
Length = 362
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 70/234 (29%), Positives = 113/234 (48%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + + + KLA + +V + L + + + +L + D L R
Sbjct: 39 DFWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVND---LLELFALTHEDPSLGNEIEREV 95
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 155
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLACVDVV 183
V+D+ + G+KSAT++ E EYA+G+L E G H LI H + A V+V+
Sbjct: 156 EVLDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEVM 215
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E S D+ I ED+ +F S G+ A + HIP+GI V T
Sbjct: 216 PE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQT 268
>UNIPROTKB|P66026 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.30.160.20 EMBL:BX842582
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 PIR:H70919 RefSeq:NP_217621.1 RefSeq:NP_337713.1
RefSeq:YP_006516568.1 ProteinModelPortal:P66026 SMR:P66026
EnsemblBacteria:EBMYCT00000000199 EnsemblBacteria:EBMYCT00000071451
GeneID:13317912 GeneID:888820 GeneID:926714 KEGG:mtc:MT3188
KEGG:mtu:Rv3105c KEGG:mtv:RVBD_3105c PATRIC:18128778
TubercuList:Rv3105c Uniprot:P66026
Length = 371
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 71/234 (30%), Positives = 121/234 (51%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD T++ V +L+ + + +++LR + ++ ++ +LA EA A
Sbjct: 43 HLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYELAAEEA-GAAAADAVAEAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ L ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 102 AELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHK 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIP+GI V
Sbjct: 221 VEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPSGIVV 273
>TIGR_CMR|GSU_2278 [details] [associations]
symbol:GSU_2278 "peptide chain release factor 2,
programmed frameshift" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:NP_953327.1
ProteinModelPortal:Q74AS3 SMR:Q74AS3 GeneID:2686956
KEGG:gsu:GSU2278 PATRIC:22027411 ProtClustDB:CLSK828793
Uniprot:Q74AS3
Length = 372
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 67/229 (29%), Positives = 118/229 (51%)
Query: 8 WDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLD 67
WD+ ++ +VL + K+++ L +A++ +++ +L E EA D +
Sbjct: 45 WDNNEEAQKVLRERTRIEKLIDLWDRLNRQADDIRVLIELGE-EAQDEATLDEVRALNDS 103
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
+ + ++ E ++L GP+D V+I AG+ G + WAE LL MY+R+ +++G++ +
Sbjct: 104 LEREVEGAEFQRMLSGPHDKNSCFVSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKTEI 163
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVP 184
D GVKSAT + EYA+GYL E G H L+ F + + H + A V V P
Sbjct: 164 TDFQAGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFVFP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+E +++I++ DL + S G+ + A + H+PTGI V
Sbjct: 223 E-IEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLTHLPTGIVV 270
>UNIPROTKB|P07012 [details] [associations]
symbol:prfB species:83333 "Escherichia coli K-12"
[GO:0015858 "nucleoside transport" evidence=IMP] [GO:0015864
"pyrimidine nucleoside transport" evidence=IMP] [GO:0015862
"uridine transport" evidence=IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA;IDA] [GO:0006415 "translational
termination" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR Gene3D:3.30.160.20 EMBL:U28375
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 EMBL:M11520 EMBL:J03795 PIR:C65073
RefSeq:NP_417367.1 RefSeq:YP_491092.1 PDB:1GQE PDB:1MI6 PDB:1ML5
PDBsum:1GQE PDBsum:1MI6 PDBsum:1ML5 ProteinModelPortal:P07012
SMR:P07012 DIP:DIP-10559N IntAct:P07012 MINT:MINT-1238444
PaxDb:P07012 PRIDE:P07012 EnsemblBacteria:EBESCT00000002308
EnsemblBacteria:EBESCT00000016130 GeneID:12930712 GeneID:947369
KEGG:ecj:Y75_p2823 KEGG:eco:b2891 PATRIC:32121192 EchoBASE:EB0755
EcoGene:EG10762 BioCyc:EcoCyc:EG10762-MONOMER
BioCyc:ECOL316407:JW5847-MONOMER EvolutionaryTrace:P07012
Genevestigator:P07012 GO:GO:0015862 Uniprot:P07012
Length = 365
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 71/234 (30%), Positives = 123/234 (52%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQ 273
>TAIR|locus:2010748 [details] [associations]
symbol:AT1G56350 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
EMBL:CP002684 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:SAVRITY
IPI:IPI00540527 RefSeq:NP_176032.2 UniGene:At.42791
ProteinModelPortal:F4I532 SMR:F4I532 PRIDE:F4I532
EnsemblPlants:AT1G56350.1 GeneID:842089 KEGG:ath:AT1G56350
Uniprot:F4I532
Length = 482
Score = 261 (96.9 bits), Expect = 6.2e-22, P = 6.2e-22
Identities = 72/232 (31%), Positives = 114/232 (49%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDPT + ++ + L +K V + R E ++ +LA+ E D L
Sbjct: 153 DLWDDPTHAGKISREHGSLTGKMKGVMTFE--RELLEHIDML-KLAKEEN-DSELESETL 208
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+A +D+ ++ + E+ LL ND + ++AG+ G WA ++ MY WA +
Sbjct: 209 KALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRK 268
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
+ VVD+ + G+K ATI+ EYA+GY E G H L+ F +G H + A
Sbjct: 269 FSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRH-TSFAA 327
Query: 180 VDVVPLFLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGI 228
V V+P+ + S ++I+D DL F S G+ + A I HIPTGI
Sbjct: 328 VAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGI 379
>TIGR_CMR|SPO_2585 [details] [associations]
symbol:SPO_2585 "peptide chain release factor 2"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.160.20 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_167798.1
ProteinModelPortal:Q5LQA8 SMR:Q5LQA8 GeneID:3194310
KEGG:sil:SPO2585 PATRIC:23378573 Uniprot:Q5LQA8
Length = 375
Score = 245 (91.3 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 70/238 (29%), Positives = 119/238 (50%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALK-DLRYKAEEAKLIAQLAEMEAIDYGL 57
V + NLWD+P + +++ + L D+L + ++ DL A+ +LI +L EME D +
Sbjct: 39 VEDPNLWDNPENAQKLMRERQTLVDALDIYKGIETDL---ADNIELI-ELGEMED-DQDV 93
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K A A + + + E+ LL G D + I AG+ G WA L MYVRW
Sbjct: 94 IKDAEAALKALRERAAEKELEALLDGEADGNDTFLEINAGAGGTESCDWASMLARMYVRW 153
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEA 175
A+K+GY+ + + G+KSA + A+G+L E+G H L+ P + +
Sbjct: 154 AEKKGYKVELQSESAGDEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYDAAAKRHT 213
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + V V P+ ++ + +++++ D+ + S G+ + A I HIPTGI V
Sbjct: 214 SFSSVWVYPV-VDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVV 270
>TIGR_CMR|ECH_0705 [details] [associations]
symbol:ECH_0705 "peptide chain release factor 2,
programmed frameshift" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 eggNOG:COG1186
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_507510.1
ProteinModelPortal:Q2GGC3 STRING:Q2GGC3 GeneID:3927613
KEGG:ech:ECH_0705 PATRIC:20576858 ProtClustDB:CLSK748740
Uniprot:Q2GGC3
Length = 366
Score = 208 (78.3 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 63/233 (27%), Positives = 110/233 (47%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + + +L + A K +N+ +L EE +L + D A
Sbjct: 45 SLWDDNSLAQRILCERARISKTLNSFTELE---EEYNYYTELLSVINNDTDELLNELEAG 101
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD-KEGY 123
L + + + + E+ L D + I++G+ G W+ L MYVRWA+ +
Sbjct: 102 LAKLKEKVQKKEVECLFSNEADHNDCFIEIQSGAGGTESNDWSSMLFRMYVRWAEIYHNF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEATLACVD 181
+ +V K + GVKSATI+ + A+G+ E+G H L+ P N + T + +
Sbjct: 162 KTEIVHKLDGEEVGVKSATIKVIGDNAYGWAKTESGIHRLVRISPFNSNAKRHTTFSSIL 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P+ E + +++I D+DL + + G+ + + A I HIP+GI V+
Sbjct: 222 VSPVINEDT-NIEILDKDLRIDTYRASGAGGQHVNKTESAVRITHIPSGIVVQ 273
>TIGR_CMR|CJE_1628 [details] [associations]
symbol:CJE_1628 "peptide chain release factor 2"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG1186
GO:GO:0016149 RefSeq:YP_179609.1 ProteinModelPortal:Q5HSX6
STRING:Q5HSX6 GeneID:3232256 KEGG:cjr:CJE1628 PATRIC:20045053
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
BioCyc:CJEJ195099:GJC0-1658-MONOMER PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 Uniprot:Q5HSX6
Length = 365
Score = 201 (75.8 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 64/235 (27%), Positives = 110/235 (46%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLR--YKA-EEAKLIAQLAEMEAIDYGLFKRAY 62
+ W D K V+ K + K+ N LK+ + A +A + LA E D + +
Sbjct: 44 SFWSD-VKQAGVIGK--EKTKITNLLKNYENAFNALNDASELFDLANSEN-DTETLEALF 99
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ + + E+S LL G ND + A V+I G+ G WA L MY+R+ ++EG
Sbjct: 100 NDAPKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREG 159
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +D + G+K + + E A+GYL E G H L+ F + H + +
Sbjct: 160 FKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRH-TSFSS 218
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V V P L+ +++I ++D+ + + G+ + + A I H PTGI V+
Sbjct: 219 VMVSPE-LDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQ 272
>TIGR_CMR|APH_0479 [details] [associations]
symbol:APH_0479 "peptide chain release factor 2,
programmed frameshift" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1186 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 RefSeq:YP_505078.1 ProteinModelPortal:Q2GKM3
STRING:Q2GKM3 GeneID:3930254 KEGG:aph:APH_0479 PATRIC:20949594
ProtClustDB:CLSK747346 Uniprot:Q2GKM3
Length = 376
Score = 197 (74.4 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 66/239 (27%), Positives = 112/239 (46%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRAYRA 64
+LWDD K+ +L ++ +V L R +E K +A+LAEM + D F A
Sbjct: 45 SLWDDAEKAKSLL---SERSRVSAVLTSFRVLEKEHKDLAELAEMISDSDDRDFLATINA 101
Query: 65 SLDVSKL-LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK-EG 122
L KL + Q + + D +TI++G+ G W LL MY +WA+
Sbjct: 102 ELQSLKLRISQKKTECMFSHEADANSCFLTIRSGAGGTESSDWVCMLLRMYTKWAESFHE 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA----TLA 178
+ VD + G+K+ T++ A+G+ E+G H L+ F H A + A
Sbjct: 162 FTVETVDSVDGEETGLKAVTVKICGIGAYGWARTESGIHRLVRI--SPFDHAAKRHTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
V+V P+ ++ D++I ++DL + + G+ + + A I HIP+G+ V+ T
Sbjct: 220 SVEVSPV-VDHEIDIKILEKDLRIDTYRASGAGGQHVNKTESAVRITHIPSGMVVQCQT 277
>TIGR_CMR|NSE_0604 [details] [associations]
symbol:NSE_0604 "peptide chain release factor 2,
programmed frameshift" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 eggNOG:COG1186 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 HOGENOM:HOG000074814
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020
RefSeq:YP_506484.1 ProteinModelPortal:Q2GDG2 STRING:Q2GDG2
GeneID:3931929 KEGG:nse:NSE_0604 PATRIC:22681243 OMA:SAVRITY
ProtClustDB:CLSK2527643 Uniprot:Q2GDG2
Length = 365
Score = 190 (71.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 58/239 (24%), Positives = 120/239 (50%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LF 58
+V + LW+D +++ ++L+K + ++ +LK+ + + + + ++ E+ + D+
Sbjct: 38 LVDSPTLWEDQSRA-QLLLK--EKSQIETSLKEFKELSIQLDDLIEMIELASKDHEEETM 94
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K R L + + + + E+ L G D + I++G+ G WA LL MY RWA
Sbjct: 95 KDLERELLLLKEKIQKKEIECLFSGEADGNDCLLEIQSGAGGTESNDWAMMLLRMYTRWA 154
Query: 119 D-KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEA 175
+ ++ ++VDK + G+KS T++ + A+G+ ETG H L+ P + +
Sbjct: 155 EIYHKFQVQIVDKVEGEETGIKSCTLKVMGKNAYGWARTETGVHRLVRISPFDANAKRHT 214
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A + V P +E ++ I ++DL + + G+ + + A I H+P+ I V+
Sbjct: 215 SFAKIFVSPC-IEGEINISIDEKDLKIDTYRASGAGGQHVNKTESAIRITHLPSKIVVQ 272
>TIGR_CMR|CPS_3552 [details] [associations]
symbol:CPS_3552 "peptide chain release factor 1"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 OMA:EMPEINP
TIGRFAMs:TIGR00019 RefSeq:YP_270226.1 ProteinModelPortal:Q47Y94
SMR:Q47Y94 STRING:Q47Y94 GeneID:3522324 KEGG:cps:CPS_3552
PATRIC:21470035 BioCyc:CPSY167879:GI48-3580-MONOMER Uniprot:Q47Y94
Length = 362
Score = 189 (71.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 69/239 (28%), Positives = 110/239 (46%)
Query: 7 LWDDPT--KSNEVLVKLADSLKVVNALKDL--RYK-AEEAKLIAQLA------EMEAIDY 55
L DP E L+ K ++A+ + YK AE+ A+L +M +
Sbjct: 22 LLSDPATISDQEKFRALSKEFKQLDAVTSVFNNYKSAEDDFSTAELMLKDDDPDMREMAQ 81
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
FK A +A D++ D+ ++ L R PND V I+AG+ G I+A L MY
Sbjct: 82 EEFKDAKKAVADIA---DELQILLLPRDPNDDNNCFVEIRAGAGGDEAAIFAGDLFRMYS 138
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP-NGSFPHE 174
R+A+K+G++ V++ + GG K ++ E FG++ E+G H + P S
Sbjct: 139 RYAEKKGWKIEVMNSNESEQGGYKELIMKVNGEGVFGHMKFESGGHRVQRVPATESQGRV 198
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
T AC VV + + ++I+ DL F + G+ + A I HIPTG+ V
Sbjct: 199 HTSACTVVVMPEIPEADAIEINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVV 257
>UNIPROTKB|Q9KQ25 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.160.20 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 187 (70.9 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 58/187 (31%), Positives = 89/187 (47%)
Query: 48 AEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWA 107
AEM + K A A + +L D+ ++ L + PND + I+AG+ G I+A
Sbjct: 74 AEMREMAQDEIKAAKAA---IERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFA 130
Query: 108 EQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167
L MY R+A+K+G+R V+ ++GG K + + A+G L E+G H + P
Sbjct: 131 GDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVP 190
Query: 168 NGSFPHEA-TLAC-VDVVPLFLETS-PDLQISDEDL-LFSSPSLPGERQSIAKPAACIQH 223
T AC V V+P E P+++ SD + F S G+ + A I H
Sbjct: 191 ATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITH 250
Query: 224 IPTGIAV 230
+PTGI V
Sbjct: 251 LPTGIVV 257
>TIGR_CMR|VC_2179 [details] [associations]
symbol:VC_2179 "peptide chain release factor 1" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 187 (70.9 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 58/187 (31%), Positives = 89/187 (47%)
Query: 48 AEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWA 107
AEM + K A A + +L D+ ++ L + PND + I+AG+ G I+A
Sbjct: 74 AEMREMAQDEIKAAKAA---IERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFA 130
Query: 108 EQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167
L MY R+A+K+G+R V+ ++GG K + + A+G L E+G H + P
Sbjct: 131 GDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVP 190
Query: 168 NGSFPHEA-TLAC-VDVVPLFLETS-PDLQISDEDL-LFSSPSLPGERQSIAKPAACIQH 223
T AC V V+P E P+++ SD + F S G+ + A I H
Sbjct: 191 ATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITH 250
Query: 224 IPTGIAV 230
+PTGI V
Sbjct: 251 LPTGIVV 257
>DICTYBASE|DDB_G0288835 [details] [associations]
symbol:prfB "class I peptide chain release factor"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 dictyBase:DDB_G0288835
GO:GO:0005737 Gene3D:3.30.160.20 GenomeReviews:CM000154_GR
eggNOG:COG1186 EMBL:AAFI02000125 GO:GO:0016149
PANTHER:PTHR11075:SF6 RefSeq:XP_636549.1 ProteinModelPortal:Q54IC8
STRING:Q54IC8 EnsemblProtists:DDB0237485 GeneID:8626834
KEGG:ddi:DDB_G0288835 InParanoid:Q54IC8 OMA:LINESHN Uniprot:Q54IC8
Length = 424
Score = 177 (67.4 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 49/162 (30%), Positives = 81/162 (50%)
Query: 74 QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCC 133
+ E+ L+ G +D +G + I+AG+ G W + L MY +W ++GY ++D
Sbjct: 169 ELEVKALMNGKDDSKGCLLEIQAGAGGNDSMDWTKILFEMYCKWGARKGYNVEIIDTADG 228
Query: 134 KNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-P-NGSFPHEATLACVDVVPLFLETSP 191
+ G + A+++ + A+G+L E G H LI P + S + A V V P+ + S
Sbjct: 229 EFG-YRHASLKIDGHNAYGWLRTEMGIHRLIRISPFSSSGKRHTSFASVVVYPIS-DDSI 286
Query: 192 DLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAV 230
+ I +DL F S G+ + + A I HIPTGI+V
Sbjct: 287 KINIDPKDLHFETLRSSGAGGQHVNKTESAVRIVHIPTGISV 328
>TIGR_CMR|BA_5572 [details] [associations]
symbol:BA_5572 "peptide chain release factor 1"
species:198094 "Bacillus anthracis str. Ames" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:NP_847729.1
RefSeq:YP_022240.1 RefSeq:YP_031417.1 ProteinModelPortal:Q81JX1
SMR:Q81JX1 DNASU:1085262 EnsemblBacteria:EBBACT00000012375
EnsemblBacteria:EBBACT00000014683 EnsemblBacteria:EBBACT00000022198
GeneID:1085262 GeneID:2819896 GeneID:2852042 KEGG:ban:BA_5572
KEGG:bar:GBAA_5572 KEGG:bat:BAS5178
BioCyc:BANT260799:GJAJ-5253-MONOMER
BioCyc:BANT261594:GJ7F-5432-MONOMER Uniprot:Q81JX1
Length = 355
Score = 163 (62.4 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 54/216 (25%), Positives = 100/216 (46%)
Query: 21 LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80
+ ++++V KD+R + ++AK + + +++A + K K L + + L
Sbjct: 41 IQETVEVYREYKDVREQLKDAKAMLE-DKLDAEMREMVKEEVSELESQEKTLSE-RLKIL 98
Query: 81 L--RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGV 138
L + PND + V ++ + G ++A L MY R+A+ +G++ +++ + GG
Sbjct: 99 LVPKDPNDDKNVIVEVRGAAGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGY 158
Query: 139 KSATIEFEFEYAFGYLSGETGAHCLINFP---NGSFPHEATLACVDVVPLFLETSPDLQI 195
K + AF L E GAH + P +G H +T A V V+P E D+
Sbjct: 159 KEIIFMINGKGAFAKLKFENGAHRVQRVPETESGGRIHTST-ATVAVLPEAEEVEIDIHE 217
Query: 196 SDEDL-LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D + F+S G+ + A + H+PTG+ V
Sbjct: 218 KDVRVDTFASSGPGGQSVNTTMSAVRLTHLPTGVVV 253
>TIGR_CMR|CHY_2563 [details] [associations]
symbol:CHY_2563 "peptide chain release factor 1"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0
OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
RefSeq:YP_361356.1 ProteinModelPortal:Q3A928 SMR:Q3A928
STRING:Q3A928 GeneID:3727190 KEGG:chy:CHY_2563 PATRIC:21278175
BioCyc:CHYD246194:GJCN-2562-MONOMER Uniprot:Q3A928
Length = 358
Score = 162 (62.1 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 56/220 (25%), Positives = 107/220 (48%)
Query: 22 ADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL-DVSKLLDQYEMS-K 79
A+ ++V ++ + +E + ++ + E +D F+ ++ L D+ + ++ E K
Sbjct: 39 AEIEEIVQVYREYKKTVKEIEDAERMLD-EKLDPD-FRELVQSELHDLKERREELEAKLK 96
Query: 80 LL---RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG 136
+L + PND + + I+AG+ G ++A L MY ++AD+ G++ ++D G
Sbjct: 97 ILLLPKDPNDEKNVIMEIRAGAGGEEAALFAGDLFRMYSKYADRMGWKVEIMDSHPTDLG 156
Query: 137 GVKSATIEFEFEYAFGYLSGETGAHCLINFP---NGSFPHEATLACVDVVPLFLETSPDL 193
G K E + + + E+G H + P +G H +T A V V+P E ++
Sbjct: 157 GFKEVIFTIEGKGVYSRMKFESGVHRVQRVPTTESGGRIHTST-ATVAVLPEAEEV--EV 213
Query: 194 QISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+I+ DL +F + G+ + + A I HIPTGI V
Sbjct: 214 EINPNDLRIDVFCASGAGGQHVNKTESAVRITHIPTGIVV 253
>TIGR_CMR|DET_1210 [details] [associations]
symbol:DET_1210 "peptide chain release factor 1"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_181923.1 ProteinModelPortal:Q3Z776
STRING:Q3Z776 GeneID:3229489 KEGG:det:DET1210 PATRIC:21609455
OMA:SVMLEIR BioCyc:DETH243164:GJNF-1211-MONOMER Uniprot:Q3Z776
Length = 355
Score = 158 (60.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 64/207 (30%), Positives = 94/207 (45%)
Query: 35 RYKA--EEAKLIAQLAEMEAI-DYGLFKRAYRASLDVSK--LLDQYEMSKLLRGPNDVEG 89
RYKA +E + L E+E D R ASL+ S L Q + L + PND +
Sbjct: 50 RYKAISKELEDTKNLLEIEKDEDMKDMVRGEIASLEKSMADLYTQMTLELLPKDPNDDKS 109
Query: 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY 149
+ I+AG+ G ++A L MY R+A + ++ V+D G +K E +
Sbjct: 110 IIMEIRAGTGGDEAGLFAADLYKMYTRYALLKNWKTEVIDINGNVAGIIKEVVFEVNGKG 169
Query: 150 AFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVPLFLETSPDLQISDEDL-LFSSP 205
AF L E G H + P H +T A V V+P E D+ + D + +F S
Sbjct: 170 AFSRLKYERGVHRVQRVPQTEASGRIHTST-ATVAVLPQVEEVDIDINMDDVRVDIFHSS 228
Query: 206 SLPGERQSIAKPAACIQ--HIPTGIAV 230
G Q++ K A I+ HIPTG+ V
Sbjct: 229 GAGG--QNVQKVATAIRLTHIPTGLVV 253
>TIGR_CMR|SO_3833 [details] [associations]
symbol:SO_3833 "peptide chain release factor 1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:GEAGGYK ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:NP_719366.1 ProteinModelPortal:Q8EAR3
SMR:Q8EAR3 GeneID:1171478 KEGG:son:SO_3833 PATRIC:23527352
Uniprot:Q8EAR3
Length = 363
Score = 157 (60.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 47/171 (27%), Positives = 80/171 (46%)
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
A +++ +L + ++ L + PND A + I+AG+ G I+A L MY R+A+ +
Sbjct: 87 AKVELERLEAELQILLLPKDPNDDTNAFIEIRAGAGGDEAAIFAGDLFRMYSRYAEANRW 146
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVV 183
+ ++ ++GG K ++ E A+G L E+G H + P + V VV
Sbjct: 147 QLEIMSSNEGEHGGFKEIIVKVSGEGAYGKLKFESGGHRVQRVPETESQGRVHTSAVTVV 206
Query: 184 PLF-LETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + + + I+ DL F S G+ + A I HIPTGI V
Sbjct: 207 VMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVV 257
>TAIR|locus:2041409 [details] [associations]
symbol:AT2G47020 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IEA] [GO:0006415
"translational termination" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:3.30.160.20 GO:GO:0016149
KO:K02835 OMA:EMPEINP TIGRFAMs:TIGR00019 EMBL:BT030058
IPI:IPI00517548 RefSeq:NP_182225.3 UniGene:At.43988
ProteinModelPortal:A2RVR7 SMR:A2RVR7 PRIDE:A2RVR7
EnsemblPlants:AT2G47020.1 GeneID:819316 KEGG:ath:AT2G47020
TAIR:At2g47020 PhylomeDB:A2RVR7 Genevestigator:Q3E6W0
Uniprot:A2RVR7
Length = 413
Score = 156 (60.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 56/226 (24%), Positives = 99/226 (43%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA---SLDV 68
+++N+ L KL DS+ ++N DLR K +E + L + D + A +++
Sbjct: 85 SRANKELRKLRDSMLLIN---DLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEE 141
Query: 69 SKLLDQYEMSKLL-RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
K L + LL + D + ++AG+ G ++A + MY R++ K+G++ +
Sbjct: 142 EKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDI 201
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFL 187
VD G K A+ +G L E+G H + P + + V L
Sbjct: 202 VDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQ 261
Query: 188 ETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D+Q+ +EDL + S G+ + A I H+PTG+ V
Sbjct: 262 ADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMV 307
>UNIPROTKB|P0A7I0 [details] [associations]
symbol:prfA "peptide chain release factor RF1"
species:83333 "Escherichia coli K-12" [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA;IDA] [GO:0006415
"translational termination" evidence=IEA;IMP] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
Gene3D:3.30.160.20 GO:GO:0043022 GO:GO:0016149 EMBL:M25323
EMBL:U18555 EMBL:D28567 PDB:2B3T PDBsum:2B3T eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 EMBL:M11519 PIR:H64867 RefSeq:NP_415729.1
RefSeq:YP_489478.1 ProteinModelPortal:P0A7I0 SMR:P0A7I0
DIP:DIP-35936N IntAct:P0A7I0 MINT:MINT-1219241 PaxDb:P0A7I0
PRIDE:P0A7I0 EnsemblBacteria:EBESCT00000004821
EnsemblBacteria:EBESCT00000015260 GeneID:12931113 GeneID:949002
KEGG:ecj:Y75_p1183 KEGG:eco:b1211 PATRIC:32117674 EchoBASE:EB0754
EcoGene:EG10761 BioCyc:EcoCyc:EG10761-MONOMER
BioCyc:ECOL316407:JW1202-MONOMER EvolutionaryTrace:P0A7I0
Genevestigator:P0A7I0 Uniprot:P0A7I0
Length = 360
Score = 154 (59.3 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 54/215 (25%), Positives = 96/215 (44%)
Query: 20 KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK 79
+L+D + + ++ E A+++ EM + + A S +L Q ++
Sbjct: 44 QLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKS---EQLEQQLQVLL 100
Query: 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVK 139
L + P+D A + ++AG+ G ++A L MY R+A+ +R ++ ++GG K
Sbjct: 101 LPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK 160
Query: 140 SATIEFEFEYAFGYLSGETGAHCLINFP-NGSFPHEATLAC-VDVVPLFLETS-PDLQIS 196
+ + +G L E+G H + P S T AC V V+P + PD+ +
Sbjct: 161 EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPA 220
Query: 197 DEDL-LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D + F S G+ + A I H+PTGI V
Sbjct: 221 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVV 255
>TIGR_CMR|APH_0420 [details] [associations]
symbol:APH_0420 "peptide chain release factor 1"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 RefSeq:YP_505023.1
ProteinModelPortal:Q2GKS8 STRING:Q2GKS8 GeneID:3929978
KEGG:aph:APH_0420 PATRIC:20949454 OMA:EMPEINP ProtClustDB:PRK00591
BioCyc:APHA212042:GHPM-447-MONOMER TIGRFAMs:TIGR00019
Uniprot:Q2GKS8
Length = 359
Score = 153 (58.9 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 60/221 (27%), Positives = 105/221 (47%)
Query: 22 ADSLKVVNALKDLRYKAEEAKLIAQLAEM---EAIDYGLFKRAYRASLDVSKLLD----Q 74
+D L +++ ++ +YK+ + K IA+L E+ + D L A S KLL +
Sbjct: 40 SDLLPIMSLIE--KYKSTQ-KEIAELEELVNSASTDPELRSLAKDESHIKQKLLPKLRHE 96
Query: 75 YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK 134
++S L + +D A + I+AG+ G ++ L MY+++A+++ ++ ++
Sbjct: 97 LQLSLLPKDRDDSRNAILEIRAGTGGEEAALFVGNLYRMYLKYAERKNWKVETINISTTG 156
Query: 135 NGGVKSATIEFEFEYAFGYLSGETGAHCLINFPN--GSFPHEATLACVDVVPLFLETSPD 192
GG K A+ + F L E+G H + P S + A V V+P E D
Sbjct: 157 IGGYKEASFSIGGKDVFARLKFESGVHRVQRVPETESSGRLHTSAATVAVLPEVEEV--D 214
Query: 193 LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L+I ++DL ++ S G+ + A I HIPTGI V
Sbjct: 215 LKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 255
>TIGR_CMR|CBU_1965 [details] [associations]
symbol:CBU_1965 "peptide chain release factor 1"
species:227377 "Coxiella burnetii RSA 493" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016149 EMBL:X78969 eggNOG:COG0216 HOGENOM:HOG000074815
KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
PIR:A61648 RefSeq:NP_820940.1 ProteinModelPortal:P47849 SMR:P47849
PRIDE:P47849 GeneID:1209878 KEGG:cbu:CBU_1965 PATRIC:17932673
BioCyc:CBUR227377:GJ7S-1939-MONOMER Uniprot:P47849
Length = 361
Score = 152 (58.6 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 46/170 (27%), Positives = 78/170 (45%)
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+L +L DQ ++ + + PND + I+AG+ G I+A L MY R+A+ +G+R
Sbjct: 88 TLKKEELEDQLKLLLVPKDPNDERNVFLEIRAGTGGNEAAIFAGDLFRMYARYAETKGWR 147
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP-NGSFPHEATLACVDVV 183
+V ++GG K E + L E+GAH + P S T AC +
Sbjct: 148 VNIVSAHEGEHGGFKEVIARVIGEGVYSQLKFESGAHRVQRVPVTESQGRIHTSACTVAI 207
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
++ ++I+ +L F + G+ + A I H+PTG+ V
Sbjct: 208 MPEVDEIDQIKINPAELRIDTFRASGAGGQHVNRTDSAIRITHLPTGVVV 257
>TIGR_CMR|NSE_0406 [details] [associations]
symbol:NSE_0406 "peptide chain release factor 1"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_506293.1 ProteinModelPortal:Q2GE03 SMR:Q2GE03
STRING:Q2GE03 GeneID:3931950 KEGG:nse:NSE_0406 PATRIC:22680869
ProtClustDB:CLSK2527657 BioCyc:NSEN222891:GHFU-429-MONOMER
Uniprot:Q2GE03
Length = 367
Score = 147 (56.8 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 57/229 (24%), Positives = 106/229 (46%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ--LAEMEAIDYGLFKRAYRASLDVS 69
+K ++ +L ++++ K L+ + +L+ + L + E + G K +A DV
Sbjct: 34 SKLSKEYAELKPKVELIARYKKLKEEQAYLELLVKNPLEDQEIREIG--KSDLQAIQDVI 91
Query: 70 KLLDQYEMSKLL--RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
L+ E+ ++L + +D + ++AG+ G ++A L +MY ++A++ +R +
Sbjct: 92 PKLE-LEIKRMLLPKDKDDALNVMLEVRAGTGGDEAALFAASLFHMYQKYAERMKWRFEI 150
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVP 184
+ + GG K A F L E+G H + P H +T A V V+P
Sbjct: 151 ISISHNEIGGYKEANASISGSDVFAKLKFESGVHRVQRVPETESAGRIHTST-ATVAVLP 209
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D++I+D+DL ++ S G+ + A I HIPTGI V
Sbjct: 210 E--PEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 256
>DICTYBASE|DDB_G0283175 [details] [associations]
symbol:prfA "peptide chain release factor 1"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
dictyBase:DDB_G0283175 GO:GO:0005737 GenomeReviews:CM000153_GR
Gene3D:3.30.160.20 EMBL:AAFI02000051 GO:GO:0016149 eggNOG:COG0216
KO:K02835 RefSeq:XP_639198.1 ProteinModelPortal:Q54RE7
STRING:Q54RE7 EnsemblProtists:DDB0237484 GeneID:8623973
KEGG:ddi:DDB_G0283175 InParanoid:Q54RE7 OMA:HAAICIN
ProtClustDB:CLSZ2430394 Uniprot:Q54RE7
Length = 430
Score = 147 (56.8 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 54/222 (24%), Positives = 100/222 (45%)
Query: 20 KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKL-------L 72
+L ++ + + DL K +E K + + E + G K+ ++ D++KL L
Sbjct: 110 ELQETAEPLGYFGDLIEKLKELKELQTMLVEETDEDG--KQMIKS--DINKLKQEEIEPL 165
Query: 73 DQYEMSKLLRGPNDVEG-ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
++ + LL G D G A + I+AG+ G +++ + + MY + ++G+ ++
Sbjct: 166 EKQLLFSLLPGSKDDAGDAILEIRAGTGGSEAQLFTQDVYEMYRSYCLQKGWTFEPLELS 225
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSP 191
+ GG + T+ + FG+L E+G H + P + + V L
Sbjct: 226 VTEVGGYRDVTVSVSGKGVFGFLKYESGVHRVQRVPLTETQGRIHTSTITVAILPEPKDV 285
Query: 192 DLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D+QI D DL ++ S G+ + A I H+PTGI V
Sbjct: 286 DIQIHDRDLKVDIYRSSGNGGQSVNTTDSAVRITHLPTGITV 327
>TIGR_CMR|GSU_3104 [details] [associations]
symbol:GSU_3104 "peptide chain release factor 1"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 OMA:SVMLEIR RefSeq:NP_954145.1
ProteinModelPortal:Q748B1 SMR:Q748B1 GeneID:2688463
KEGG:gsu:GSU3104 PATRIC:22029063
BioCyc:GSUL243231:GH27-3086-MONOMER Uniprot:Q748B1
Length = 355
Score = 145 (56.1 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 45/164 (27%), Positives = 75/164 (45%)
Query: 70 KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVD 129
+L + ++ L R PND + I+AG+ G ++A L MY R+A++ ++ V+
Sbjct: 87 ELEGEIKLLLLPRDPNDDRNVILEIRAGTGGDESALFAGDLFRMYSRFAERNRWKVEVMS 146
Query: 130 KCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA-TLAC-VDVVPLFL 187
+ GG K E + F L E+G H + P T AC V V+P
Sbjct: 147 ASESERGGFKEIVALIEGQGVFAKLKYESGTHRVQRVPETEAQGRIHTSACTVAVLPEAE 206
Query: 188 ETSPDLQISDEDL-LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ D+ +D + ++ + G+ + + A I HIPTGI V
Sbjct: 207 DIEVDINPADLKIDVYRASGAGGQHVNKTESAVRITHIPTGIVV 250
>TIGR_CMR|ECH_0597 [details] [associations]
symbol:ECH_0597 "peptide chain release factor 1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:YP_507408.1
ProteinModelPortal:Q2GGM5 SMR:Q2GGM5 STRING:Q2GGM5 GeneID:3927422
KEGG:ech:ECH_0597 PATRIC:20576648
BioCyc:ECHA205920:GJNR-599-MONOMER Uniprot:Q2GGM5
Length = 359
Score = 140 (54.3 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y + K+ + ++S L + +D A + I+AG+ G ++ L MY ++A+++
Sbjct: 84 YERQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEAALFVTDLYRMYTKYAEQK 143
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPN--GSFPHEATLAC 179
++ ++ GG K ++ F L E+G H + P S + A
Sbjct: 144 NWKFEQINSSSTGIGGHKEISLCISGSNVFARLKFESGVHRVQRVPETEASGRLHTSAAT 203
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V V+P E DL+I ++DL ++ S G+ + A I HIP+GI V
Sbjct: 204 VAVLPEIEEV--DLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVV 255
>TIGR_CMR|CJE_1784 [details] [associations]
symbol:CJE_1784 "peptide chain release factor 1"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_179756.1 ProteinModelPortal:Q5HSH9
SMR:Q5HSH9 STRING:Q5HSH9 GeneID:3232411 KEGG:cjr:CJE1784
PATRIC:20045378 BioCyc:CJEJ195099:GJC0-1814-MONOMER Uniprot:Q5HSH9
Length = 355
Score = 135 (52.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 53/221 (23%), Positives = 94/221 (42%)
Query: 20 KLADSLKVVNALKDLRYKAEE-AKLIAQLAEMEAI----DYG-LFKRAYRASLDVS-KLL 72
K+ K L+ + KA+E K + + E +A+ + G L K + ++ KL
Sbjct: 31 KMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLE 90
Query: 73 DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCC 132
++ ++ L + PND + I+AG+ G ++ L+ Y R+A+ GY+ +V
Sbjct: 91 EEIKILLLPKDPNDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSE 150
Query: 133 CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPLFLETSPD 192
GG K + + A+ L E G H + P + + V + +
Sbjct: 151 GSVGGFKEIIMLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIE 210
Query: 193 LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
++I+ DL + S G+ + A I HIPTGI V
Sbjct: 211 IEINPNDLKVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVV 251
>TAIR|locus:2099137 [details] [associations]
symbol:APG3 "AT3G62910" species:3702 "Arabidopsis
thaliana" [GO:0003747 "translation release factor activity"
evidence=IGI;ISS] [GO:0006415 "translational termination"
evidence=IGI;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009658 "chloroplast organization" evidence=IMP;NAS]
[GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP]
[GO:0032544 "plastid translation" evidence=IGI] [GO:0006783 "heme
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0034660 "ncRNA metabolic process"
evidence=RCA] [GO:0042793 "transcription from plastid promoter"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.30.160.20
GO:GO:0009658 GO:GO:0010027 GO:GO:0003747 GO:GO:0032544
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
TIGRFAMs:TIGR00019 OMA:SVMLEIR HSSP:P07012 EMBL:AY090253
EMBL:AY125535 EMBL:AB109893 IPI:IPI00529197 RefSeq:NP_191850.2
UniGene:At.28015 ProteinModelPortal:Q8RX79 SMR:Q8RX79 STRING:Q8RX79
PaxDb:Q8RX79 PRIDE:Q8RX79 EnsemblPlants:AT3G62910.1 GeneID:825466
KEGG:ath:AT3G62910 TAIR:At3g62910 InParanoid:Q8RX79
PhylomeDB:Q8RX79 ProtClustDB:CLSN2690621 Genevestigator:Q8RX79
Uniprot:Q8RX79
Length = 422
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 49/223 (21%), Positives = 100/223 (44%)
Query: 13 KSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRASLDVSKL 71
K + + +L + + V KD + E+K++A+ A + E + + + ++ +L
Sbjct: 89 KLAQSMSELDEVVTVFRRFKDCEKQLLESKVLAKEAGDDEDMAEMIGSEINSLTKEIEEL 148
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
Q ++ L P D + ++AG+ G IW L+ MY R++++ ++ +V
Sbjct: 149 EKQLKVLLLPSDPLDARNILLEVRAGTGGDEAAIWTGDLVRMYQRYSERSSWKFSMVSCS 208
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVPLFLE 188
++GG K+ +E + + L E+G H + P H +T A V ++P E
Sbjct: 209 EAEHGGYKTCVMEIKGNRVYSKLKYESGVHRVQRVPQTETQGRVHTST-ATVAIMPEADE 267
Query: 189 TSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAV 230
+ D +L + S G+ + + A + H P+GI +
Sbjct: 268 VEVVIDPKDIELTSARSGGAGGQNVNKVETAIDLFHKPSGIRI 310
>TIGR_CMR|SPO_2461 [details] [associations]
symbol:SPO_2461 "peptide chain release factor 1"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
HSSP:P0A7I0 ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_167678.1 ProteinModelPortal:Q5LQM7 GeneID:3194030
KEGG:sil:SPO2461 PATRIC:23378321 Uniprot:Q5LQM7
Length = 351
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 43/161 (26%), Positives = 73/161 (45%)
Query: 76 EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN 135
+++ L + D A + I+ G+ G ++A LL MY R+A+ G++ +++ +
Sbjct: 92 QLALLPKDAADARPAMLEIRPGTGGDEAALFAGDLLRMYQRYAEARGWKLELIELQETEL 151
Query: 136 GGVKSATIEFEFEYAFGYLSGETGAHCLINFP---NGSFPHEATLACVDVVPLFLETSPD 192
GG+K E F L E+G H + P +G H + A V V+P + D
Sbjct: 152 GGIKEVVARISGENVFARLKYESGVHRVQRVPETESGGRIHTSA-ATVAVLPEAQDV--D 208
Query: 193 LQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAV 230
+QI D+ S G+ + A I H+P+GI V
Sbjct: 209 IQIDPGDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVV 249
>UNIPROTKB|P66016 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842576 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 PIR:G70773 RefSeq:NP_215815.1 RefSeq:NP_335786.1
RefSeq:YP_006514676.1 ProteinModelPortal:P66016 SMR:P66016
PRIDE:P66016 EnsemblBacteria:EBMYCT00000003633
EnsemblBacteria:EBMYCT00000071350 GeneID:13319881 GeneID:886948
GeneID:924722 KEGG:mtc:MT1338 KEGG:mtu:Rv1299 KEGG:mtv:RVBD_1299
PATRIC:18124710 TubercuList:Rv1299 OMA:VEIHAND Uniprot:P66016
Length = 357
Score = 130 (50.8 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 44/159 (27%), Positives = 70/159 (44%)
Query: 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSA 141
R P+D + + +K+G G ++A L MY+R+A++ G+ V+D+ GG K A
Sbjct: 99 RDPHDADDIVLEVKSGEGGEESALFAADLARMYIRYAERHGWAVTVLDETTSDLGGYKDA 158
Query: 142 TIEFEFEY-----AFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQ 194
T+ + + + E G H + P + A V V P E +Q
Sbjct: 159 TLAIASKADTPDGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVG-QVQ 217
Query: 195 ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
I + DL +F S G+ + A I H+PTGI V
Sbjct: 218 IDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGIVV 256
>POMBASE|SPAC2F7.17 [details] [associations]
symbol:SPAC2F7.17 "mitochondrial peptide chain release
factor (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=NAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 PomBase:SPAC2F7.17 GO:GO:0005739
EMBL:CU329670 Gene3D:3.30.160.20 GO:GO:0032543 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
PIR:S58161 RefSeq:NP_592987.1 ProteinModelPortal:Q09691
STRING:Q09691 EnsemblFungi:SPAC2F7.17.1 GeneID:2541478
KEGG:spo:SPAC2F7.17 OMA:QEANSIL OrthoDB:EOG4JWZP5 NextBio:20802577
Uniprot:Q09691
Length = 396
Score = 128 (50.1 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 54/229 (23%), Positives = 98/229 (42%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA---IDYGLFKRAYRASLDV 68
T ++ ++A +V NA + +E+ + Q+ E+ + S +
Sbjct: 63 TNDTDLAKRIARLRRVHNAYSKFKSLSEQISDLKQMEAQESDAEVKMMAVTEINEISNKI 122
Query: 69 SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVV 128
K ++ E + L + + A + I+ G G I+A +L+ MY ++A+ +G+ + +
Sbjct: 123 PKSIEDLENTLLPQADSYALPALIEIRPGVGGTEAAIFANELVEMYFQYANFKGWNCKFI 182
Query: 129 DKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVP 184
K + + A E E A+G+L E G H + P H +T A V V+P
Sbjct: 183 SKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVHRVQRTPATETKGRVHTST-ASVIVLP 241
Query: 185 -LFLETSPDLQISDEDLL--FSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + S L S E + S G+ + + A + HIPTGI V
Sbjct: 242 QVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRLTHIPTGITV 290
>FB|FBgn0032486 [details] [associations]
symbol:CG5705 species:7227 "Drosophila melanogaster"
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=ISS]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE014134 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
KO:K02835 GeneTree:ENSGT00390000011879 HSSP:P07012 EMBL:AY061245
RefSeq:NP_609617.1 UniGene:Dm.3674 SMR:Q9VK20 IntAct:Q9VK20
MINT:MINT-821247 STRING:Q9VK20 EnsemblMetazoa:FBtr0080444
GeneID:34720 KEGG:dme:Dmel_CG5705 UCSC:CG5705-RA
FlyBase:FBgn0032486 InParanoid:Q9VK20 OMA:AEKDEDM OrthoDB:EOG46WWQX
GenomeRNAi:34720 NextBio:789875 Uniprot:Q9VK20
Length = 392
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 53/220 (24%), Positives = 94/220 (42%)
Query: 20 KLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRASLDVSKLLDQYEMS 78
+LA VV+AL+ R + AE + L + +D+ DQ +
Sbjct: 58 RLAQLEGVVSALEQRRVLERHITSAKDMEAEKDEDMRELMREENEVYVDLLGKQDQALLQ 117
Query: 79 KLLRGPNDVEGASVT--IKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG 136
+LL +D E ++ + AG+ G ++A++L MY + + G+ G
Sbjct: 118 ELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQELYEMYTGYFEHMGWEWEEFASEGTDIG 177
Query: 137 GVKSATIEFEFEYAFGYLSGETGAHCLINFP---NGSFPHEATLACVDVVPLFLETSPDL 193
G++ A++ E AF +L E G H + P H +T A + V+P + +
Sbjct: 178 GLRHASLMVSGEDAFRWLRYEAGVHRVQRVPATEKSGRMHTST-ASITVIPRPADIQ--V 234
Query: 194 QISDEDLLFSSPSLPG---ERQSIAKPAACIQHIPTGIAV 230
I+++DL + G + + A I H+PTG+AV
Sbjct: 235 HIAEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAV 274
>SGD|S000003111 [details] [associations]
symbol:MRF1 "Mitochondrial translation release factor"
species:4932 "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA;IMP] [GO:0070126 "mitochondrial translational
termination" evidence=IGI;IMP] [GO:0006415 "translational
termination" evidence=IEA;IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=IMP]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 SGD:S000003111 InterPro:IPR014720
GO:GO:0005739 EMBL:BK006941 Gene3D:3.30.160.20 GO:GO:0003747
EMBL:X99960 GO:GO:0016149 RefSeq:NP_011376.3 GeneID:852738
KEGG:sce:YGL139W EMBL:X60381 GO:GO:0070126 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 GeneTree:ENSGT00390000011879
OrthoDB:EOG4JWZP5 EMBL:Z72665 PIR:S28602 RefSeq:NP_011372.3
ProteinModelPortal:P30775 SMR:P30775 DIP:DIP-2626N IntAct:P30775
MINT:MINT-427494 STRING:P30775 PaxDb:P30775 EnsemblFungi:YGL143C
GeneID:852734 KEGG:sce:YGL143C CYGD:YGL143c OMA:PPHPFAD
NextBio:972135 Genevestigator:P30775 GermOnline:YGL143C
Uniprot:P30775
Length = 413
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 57/225 (25%), Positives = 105/225 (46%)
Query: 28 VNALKD--LRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE------MSK 79
++AL D + YK E+ + L EM D L RA A + ++L+ QYE ++K
Sbjct: 88 LSALTDTFIEYK-EKLNELKSLQEMIVSDPSL--RA-EAEQEYAELVPQYETTSSRLVNK 143
Query: 80 LLRG-PNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG-G 137
LL P + + + ++ G GI I+ + LL+MY+ +A+ ++ R++ K ++G G
Sbjct: 144 LLPPHPFADKPSLLELRPGVGGIEAMIFTQNLLDMYIGYANYRKWKYRIISKNENESGSG 203
Query: 138 VKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFP---HEATLACVDVVPLFLETSPDLQ 194
+ A + E ++ L E G H + P+ H +T A V + + E++ +
Sbjct: 204 IIDAILSIEEAGSYDRLRFEAGVHRVQRIPSTETKGRTHTSTAAVVVLPQIGDESAKSID 263
Query: 195 ISDE---------DLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ D++ +S G+ + A + HIP+GI V
Sbjct: 264 AYERTFKPGEIRVDIMRASGK-GGQHVNTTDSAVRLTHIPSGIVV 307
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 238 238 0.00091 113 3 11 22 0.43 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 608 (65 KB)
Total size of DFA: 189 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.19u 0.16s 20.35t Elapsed: 00:00:01
Total cpu time: 20.19u 0.16s 20.35t Elapsed: 00:00:01
Start: Fri May 10 14:38:34 2013 End: Fri May 10 14:38:35 2013