BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026460
(238 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225441347|ref|XP_002274658.1| PREDICTED: peptide chain release factor 2-like [Vitis vinifera]
Length = 417
Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 155/234 (66%), Positives = 181/234 (77%), Gaps = 1/234 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+R YNLWDD TKSNE+L KLADS KVV+ LKDL YKAEEAKLI QL EM+AI++GLF++
Sbjct: 87 MIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLFEQ 146
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVSK L QYEMSKLLRG D+EGA +TIKAG GI EIWAEQLL+MY +WA+K
Sbjct: 147 AYNASVDVSKFLYQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKWAEK 206
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG-SFPHEATLAC 179
+GY+GRVV+K KNGG+KSATIEFE EY +GYLSGE G H +I + S HE A
Sbjct: 207 QGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILHETGSAV 266
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VDV+PLFLET+PDLQI D DL SSPS G Q A CIQHIPTGI+V+ +
Sbjct: 267 VDVIPLFLETAPDLQIDDGDLRISSPSCHGVEQGRTGHAVCIQHIPTGISVQSS 320
>gi|297739884|emb|CBI30066.3| unnamed protein product [Vitis vinifera]
Length = 414
Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 155/234 (66%), Positives = 181/234 (77%), Gaps = 1/234 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+R YNLWDD TKSNE+L KLADS KVV+ LKDL YKAEEAKLI QL EM+AI++GLF++
Sbjct: 84 MIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLFEQ 143
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVSK L QYEMSKLLRG D+EGA +TIKAG GI EIWAEQLL+MY +WA+K
Sbjct: 144 AYNASVDVSKFLYQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKWAEK 203
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG-SFPHEATLAC 179
+GY+GRVV+K KNGG+KSATIEFE EY +GYLSGE G H +I + S HE A
Sbjct: 204 QGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILHETGSAV 263
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VDV+PLFLET+PDLQI D DL SSPS G Q A CIQHIPTGI+V+ +
Sbjct: 264 VDVIPLFLETAPDLQIDDGDLRISSPSCHGVEQGRTGHAVCIQHIPTGISVQSS 317
>gi|147836146|emb|CAN74766.1| hypothetical protein VITISV_041859 [Vitis vinifera]
Length = 450
Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 156/235 (66%), Positives = 182/235 (77%), Gaps = 2/235 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+R YNLWDD TKSNE+L KLADS KVV+ LKDL YKAEEAKLI QL EM+AI++GLF++
Sbjct: 119 MIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLFEQ 178
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVSK L QYEMSKLLRG D+EGA +TIKAG GI EIWAEQLL+MY +WA+K
Sbjct: 179 AYNASVDVSKFLYQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKWAEK 238
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG-SFPHEAT-LA 178
+GY+GRVV+K KNGG+KSATIEFE EY +GYLSGE G H +I + S HE T A
Sbjct: 239 QGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILHEQTGSA 298
Query: 179 CVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VDV+PLFLET+PDLQI D DL SSPS G Q A CIQHIPTGI+V+ +
Sbjct: 299 VVDVIPLFLETAPDLQIDDGDLRISSPSCHGVEQGRTGHAVCIQHIPTGISVQSS 353
>gi|224086914|ref|XP_002308002.1| predicted protein [Populus trichocarpa]
gi|222853978|gb|EEE91525.1| predicted protein [Populus trichocarpa]
Length = 374
Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/234 (64%), Positives = 184/234 (78%), Gaps = 1/234 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ NLW+DP KSNE+L+KLA S K ++ALKDL+YKAEEAKLI+QL EMEAI+Y LFK+
Sbjct: 48 MIHECNLWEDPAKSNEILIKLAGSAKAIDALKDLKYKAEEAKLISQLVEMEAINYQLFKQ 107
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY ASLDV KLLDQYEMS+LL+GP D +GA V I+AGS G+ EIW E+LLNMYV+WA+K
Sbjct: 108 AYTASLDVRKLLDQYEMSRLLKGPYDKQGACVVIRAGSKGLNHEIWKEELLNMYVKWAEK 167
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACV 180
GY+GR+V+K +GG++SATIEFEFE A+GYLSGE G H IN NGS HE T ACV
Sbjct: 168 LGYKGRLVEKHTSMHGGIESATIEFEFECAYGYLSGERGIHHKINSQNGSVHHEVTTACV 227
Query: 181 DVVPLFLETSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
DVVPLFL T D QI DE+L+ S SPSL +R+S + C+QHIPTGI+V+ +
Sbjct: 228 DVVPLFLGTGFDFQIDDEELIVSCSPSLLRDRKSRTELTVCLQHIPTGISVQSS 281
>gi|356504376|ref|XP_003520972.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 437
Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 143/232 (61%), Positives = 184/232 (79%), Gaps = 1/232 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MVR++++WDDP KSN++LVKLA+S KVV++LKDL+YK EEAKLI QLAE+ AIDYGL+K+
Sbjct: 101 MVRDFDMWDDPAKSNDILVKLANSAKVVDSLKDLKYKVEEAKLINQLAEINAIDYGLYKQ 160
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLDVS+++DQYE+SKLL+GP D+ GA + IKAG GI P++WAEQ+L+MY+RWA +
Sbjct: 161 AYETSLDVSEIVDQYEISKLLKGPFDMAGACLVIKAGPKGIYPKLWAEQILSMYLRWAKR 220
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FPNGSFPHEATLAC 179
GY GR+VDKC KNGG+ SA IEFEFE A+GYLSGE G H LI PN S EA+ A
Sbjct: 221 RGYEGRIVDKCPFKNGGINSAIIEFEFECAYGYLSGEKGVHYLIRGSPNESSQLEASSAT 280
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
VDV+P+FLE++ DL+I EDL+ SSP + G+ + CIQHIPTGI+V+
Sbjct: 281 VDVIPMFLESACDLEIDSEDLIISSPLIHGKNKRQTDHTVCIQHIPTGISVQ 332
>gi|356534710|ref|XP_003535895.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 427
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/233 (60%), Positives = 184/233 (78%), Gaps = 1/233 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MVR++++WDDP KSN++LVKLA+S KVV++LKDL+YK EEAKLI QLAE+ AIDYGL+K+
Sbjct: 101 MVRDFDMWDDPAKSNDILVKLANSAKVVDSLKDLKYKVEEAKLINQLAEINAIDYGLYKQ 160
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLDVS+++D YE+SKLL+GP D+ GA + IKAG G+ P++WAEQ+L+MY+RWA +
Sbjct: 161 AYETSLDVSEIVDLYEISKLLKGPFDMAGACLVIKAGPKGMYPKLWAEQILSMYLRWAKR 220
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FPNGSFPHEATLAC 179
+GY GR+VDKC KNGG+ SA IEFEFE A+GYLSGE G H LI PN S EA+ A
Sbjct: 221 QGYEGRIVDKCLYKNGGINSAIIEFEFECAYGYLSGEKGVHYLIRGSPNESSQLEASSAT 280
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRG 232
VDV+P+FLE++ DL+I EDL+ SSP + G+ + CIQHIPTGI+V+
Sbjct: 281 VDVIPMFLESACDLEIDSEDLIISSPLIHGKNKRQTDHTVCIQHIPTGISVQS 333
>gi|357439325|ref|XP_003589939.1| Peptide chain release factor [Medicago truncatula]
gi|355478987|gb|AES60190.1| Peptide chain release factor [Medicago truncatula]
Length = 538
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/234 (61%), Positives = 181/234 (77%), Gaps = 2/234 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MVR+ +LWDDPTKSN++LVKLA+S KVV++LKDLRYK EEAKLI QLAEM AIDYGL+K+
Sbjct: 215 MVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKVEEAKLIKQLAEMNAIDYGLYKQ 274
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY AS+DVS +LDQYE+SKLL+GP D+ GA + IKA + GI ++WAEQLL MY+ WA +
Sbjct: 275 AYDASVDVSNILDQYEISKLLKGPFDMAGACLVIKAAT-GIFSKLWAEQLLQMYLGWAKR 333
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FPNGSFPHEATLAC 179
+GY GR+VD+C +NGG+ SATIEFEFE A+GYL GE G H LI PN S E + A
Sbjct: 334 QGYEGRIVDRCLTENGGINSATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLETSTAT 393
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VDV+PLFLE + DL+I EDL+ SSP + GE++ + CI HIPTGI V+ +
Sbjct: 394 VDVIPLFLEKALDLEIDSEDLIISSPLIHGEQKRQTQRIVCIHHIPTGITVQSS 447
>gi|356498639|ref|XP_003518157.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 385
Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 181/234 (77%), Gaps = 1/234 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
MV ++++W+DP KSN+++VKL +S KVV++L+DL+YK EEAKLI QLAE+ IDYGL+K+
Sbjct: 59 MVWDFDMWNDPAKSNDIIVKLENSAKVVDSLRDLKYKVEEAKLINQLAEINVIDYGLYKQ 118
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLDVS++LDQYE+SKLL+GP D+ GA + IKAG NGI ++WAEQ+L MY+RWA +
Sbjct: 119 AYETSLDVSEILDQYEISKLLKGPFDMAGACLVIKAGPNGIYSKLWAEQILIMYLRWAKR 178
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FPNGSFPHEATLAC 179
+GY GR+VDKC KNGG+ SA IEFEFE A+GYLSGE G H +I PN S EA+ A
Sbjct: 179 QGYAGRIVDKCLFKNGGINSAIIEFEFECAYGYLSGEKGVHYMIRGSPNESSQLEASSAT 238
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VDV+P+FLE + DL+I EDL+ SSP + GE + CIQHIPTGI+V+ +
Sbjct: 239 VDVIPMFLENACDLEIDSEDLIISSPLIHGENKRQTDHTVCIQHIPTGISVQSS 292
>gi|22135990|gb|AAM91577.1| putative protein [Arabidopsis thaliana]
gi|30725574|gb|AAP37809.1| At3g57190 [Arabidopsis thaliana]
Length = 372
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 164/234 (70%), Gaps = 7/234 (2%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 49 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 108
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA++
Sbjct: 109 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERL 168
Query: 122 GYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLAC 179
G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E A
Sbjct: 169 GQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLI---ISSTSNEECSAT 225
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ ++ +
Sbjct: 226 VDIIPLFLRASPDFEVKEGDLIVSYPA--KEDHKIAENMVCIHHIPSGVTLQSS 277
>gi|30694592|ref|NP_191278.2| putative peptide chain release factor [Arabidopsis thaliana]
gi|332646104|gb|AEE79625.1| putative peptide chain release factor [Arabidopsis thaliana]
Length = 406
Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 164/234 (70%), Gaps = 7/234 (2%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA++
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERL 202
Query: 122 GYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLAC 179
G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E A
Sbjct: 203 GQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLI---ISSTSNEECSAT 259
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ ++ +
Sbjct: 260 VDIIPLFLRASPDFEVKEGDLIVSYPA--KEDHKIAENMVCIHHIPSGVTLQSS 311
>gi|6735298|emb|CAB68125.1| putative protein [Arabidopsis thaliana]
Length = 409
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 164/237 (69%), Gaps = 10/237 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R ++LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP---EIWAEQLLNMYVRWA 118
Y +SLDVS+ L YEMSKLLR D EGA + IK+GS G +IW EQ+++MY++WA
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQDLQIWTEQVVSMYIKWA 202
Query: 119 DKEGYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEAT 176
++ G RV +KC GV SATIEFEFE+A+GYL GE G H LI S +E
Sbjct: 203 ERLGQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLI---ISSTSNEEC 259
Query: 177 LACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
A VD++PLFL SPD ++ + DL+ S P+ E IA+ CI HIP+G+ ++ +
Sbjct: 260 SATVDIIPLFLRASPDFEVKEGDLIVSYPA--KEDHKIAENMVCIHHIPSGVTLQSS 314
>gi|297817036|ref|XP_002876401.1| hypothetical protein ARALYDRAFT_324229 [Arabidopsis lyrata subsp.
lyrata]
gi|297322239|gb|EFH52660.1| hypothetical protein ARALYDRAFT_324229 [Arabidopsis lyrata subsp.
lyrata]
Length = 409
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/237 (52%), Positives = 161/237 (67%), Gaps = 10/237 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R Y+LWDDP KS+E+L+KLAD K V++LKDL+YKAEEAKLI QL EM+AIDY LF++A
Sbjct: 83 MRYYDLWDDPAKSDEILLKLADRAKTVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQA 142
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP---EIWAEQLLNMYVRWA 118
Y +SLDVS+ L YEMSKLL D EGA + IK+GS +IW EQ+++MY++WA
Sbjct: 143 YDSSLDVSRSLHHYEMSKLLTDQYDAEGACMIIKSGSQDAKSQDLQIWTEQVVSMYIKWA 202
Query: 119 DKEGYRGRVVDKCC--CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEAT 176
+K G RV +KC GV SATIEFEF++A+GYL GE G H LI S E
Sbjct: 203 EKLGQNARVAEKCSFLSNKSGVNSATIEFEFDFAYGYLLGERGVHRLIISSTSS---EEC 259
Query: 177 LACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
A VD++PLFL SPD ++ ++DL+ S P+ E IA+ IQHIP+GI V +
Sbjct: 260 SATVDIIPLFLRASPDFEVKEDDLIVSYPA--KENHKIAENMVSIQHIPSGITVESS 314
>gi|242087755|ref|XP_002439710.1| hypothetical protein SORBIDRAFT_09g018740 [Sorghum bicolor]
gi|241944995|gb|EES18140.1| hypothetical protein SORBIDRAFT_09g018740 [Sorghum bicolor]
Length = 409
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 160/231 (69%), Gaps = 4/231 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++R NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 83 VLRKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 142
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 143 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 202
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI--NFPNGSFPHEATLA 178
+GY+ +++K +G ++SA +E E EY FG LSGE G H +I + N +A A
Sbjct: 203 QGYKVGLIEKIFSTSGHIQSAAMEIESEYMFGTLSGEKGMHQMIYSSLENSDID-QALSA 261
Query: 179 CVDVVPLFLETSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGI 228
VD++PLFL+ DL + D D+ S SPS+ +R A +QH+P+G+
Sbjct: 262 RVDIIPLFLDRPVDLHLDDGDIETSPSPSVHKKRGRRNGAAVRVQHVPSGV 312
>gi|413945159|gb|AFW77808.1| hypothetical protein ZEAMMB73_793358 [Zea mays]
Length = 408
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 161/236 (68%), Gaps = 4/236 (1%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 82 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 142 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI--NFPNGSFPHEATLA 178
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I + N +A A
Sbjct: 202 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMIYSSLENSDID-QALSA 260
Query: 179 CVDVVPLFLETSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VD++PLFL+ L + D+D+ S SPS+ + A +QH+P+G+ +
Sbjct: 261 RVDIIPLFLDRPVVLHLDDDDIETSPSPSVHKKGDRRNGVAVRVQHVPSGVTAESS 316
>gi|357133924|ref|XP_003568571.1| PREDICTED: peptide chain release factor 2-like [Brachypodium
distachyon]
Length = 409
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 153/235 (65%), Gaps = 2/235 (0%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++++ NLWD+P KS+E L L+D+++ V+ LKDL YKAEE+KLI+QLA M+ I+ LFK+
Sbjct: 82 VLQSRNLWDNPAKSHETLSALSDAIRAVDHLKDLLYKAEESKLISQLAGMDVINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY SLD S+ LD+Y+M KLL+GP D EGA + + A S + E+WAE+L MY WA +
Sbjct: 142 AYEVSLDASEFLDRYQMCKLLKGPYDKEGACIIVTAESESVASELWAEKLFGMYASWARR 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATLAC 179
+G +G +V+K +G ++ A +E E EY FG L GE G H +I + + S +A A
Sbjct: 202 QGCKGGLVEKIVSTSGHIQFAAMEIESEYMFGTLYGEKGVHRMIYSSVDNSGTDKAVSAR 261
Query: 180 VDVVPLFLETSPDLQISDEDLLFS-SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
VD++PLFL++ +L + D+DL S SPS R IQH+P+G+ + +
Sbjct: 262 VDIIPLFLDSPVNLHLEDDDLEISPSPSGCENRSQRNGATVRIQHMPSGVDAQSS 316
>gi|297604413|ref|NP_001055378.2| Os05g0375600 [Oryza sativa Japonica Group]
gi|255676317|dbj|BAF17292.2| Os05g0375600 [Oryza sativa Japonica Group]
Length = 407
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 151/230 (65%), Gaps = 11/230 (4%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++R NLWD+P KS+E L LAD+++VV+ LKDLRYKAEEAKLI+QL+EM+ I+ LFK+
Sbjct: 90 VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ 149
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY+ S+D ++ LD+Y+M KLL+GP D EGA + + AGS+ E++ MY WA K
Sbjct: 150 AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSD--------ERIFCMYSSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G + +V+K +G V +A IE E EY FG L+GE G H +I +P + + +EAT A
Sbjct: 202 QGCKDGLVEKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMI-YPSVDNAGTYEATSA 260
Query: 179 CVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGI 228
VD++PLFL+ +L + + DL S +R+ A +QHI TG+
Sbjct: 261 RVDIIPLFLDRPVNLHLDENDLEISPSPSDHKRRDHRNSAIRVQHIRTGV 310
>gi|195611870|gb|ACG27765.1| peptide chain release factor 2 [Zea mays]
Length = 262
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 125/164 (76%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 82 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 142 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI 164
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I
Sbjct: 202 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMI 245
>gi|413945157|gb|AFW77806.1| hypothetical protein ZEAMMB73_793358, partial [Zea mays]
Length = 265
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 125/164 (76%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 85 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 144
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 145 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 204
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI 164
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I
Sbjct: 205 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMI 248
>gi|219362723|ref|NP_001136772.1| peptide chain release factor 2 [Zea mays]
gi|194697000|gb|ACF82584.1| unknown [Zea mays]
gi|413945158|gb|AFW77807.1| peptide chain release factor 2 [Zea mays]
Length = 262
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 125/164 (76%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+++ NLWD+P KS+E L LAD+++VV+ LKDLR+KAEEAKLI+QL+EM+AI+ LFK+
Sbjct: 82 VLQKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDAINGELFKQ 141
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
AY++S+D S+ LD+Y+M KLL+GP D EGA + + A SNG+ E+WAE++ MY WA K
Sbjct: 142 AYKSSVDASEYLDRYQMYKLLKGPYDKEGACIIVTAVSNGVTSELWAEKVFGMYTSWARK 201
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI 164
+GY+ +++K +G ++SAT+E E EY FG LSGE G H +I
Sbjct: 202 QGYKVGLIEKIFSTSGHIQSATMEIESEYMFGTLSGEKGMHQMI 245
>gi|222637229|gb|EEE67361.1| hypothetical protein OsJ_24645 [Oryza sativa Japonica Group]
Length = 498
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 147/236 (62%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L DL+ + EEA+ I +L E +++ID GL + A
Sbjct: 162 DSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEAS 221
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 222 KIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQR 281
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + A V
Sbjct: 282 YKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 341
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAVR T
Sbjct: 342 EVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCT 397
>gi|115472651|ref|NP_001059924.1| Os07g0546600 [Oryza sativa Japonica Group]
gi|33146529|dbj|BAC79675.1| putative translation releasing factor2 [Oryza sativa Japonica
Group]
gi|113611460|dbj|BAF21838.1| Os07g0546600 [Oryza sativa Japonica Group]
Length = 460
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 147/236 (62%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L DL+ + EEA+ I +L E +++ID GL + A
Sbjct: 124 DSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKLTEELDSIDTGLLEEAS 183
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 184 KIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQR 243
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + A V
Sbjct: 244 YKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 303
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAVR T
Sbjct: 304 EVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCT 359
>gi|125558711|gb|EAZ04247.1| hypothetical protein OsI_26391 [Oryza sativa Indica Group]
Length = 457
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 147/236 (62%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L DL+ + EEA+ I +L E +++ID GL + A
Sbjct: 121 DSSLWDDPSKAQEILVALTEVKDRVKLLNDLKSQVEEAETIVKLTEELDSIDTGLLEEAS 180
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 181 KIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWGEKQR 240
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + A V
Sbjct: 241 YKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 300
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAVR T
Sbjct: 301 EVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCT 356
>gi|326511439|dbj|BAJ87733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 517
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 145/234 (61%), Gaps = 6/234 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ LWDDP+K+ E+LV L + + V L D + + EEA I QL E +++ID GL + A
Sbjct: 181 DSTLWDDPSKAQELLVALTELKEKVKLLNDFKSQVEEADTIVQLTEELDSIDTGLLEEAS 240
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D +GA +TI AG+ G + WA+ LL MYVRW +K+
Sbjct: 241 KIIKALNKALDNFEMTRLLSGPYDKDGAVITISAGAGGTDAQDWADMLLRMYVRWGEKQR 300
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 301 YKSRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 360
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVR 231
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAVR
Sbjct: 361 EVMPLLPEESLDVEIPEEDLDISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVR 414
>gi|357116694|ref|XP_003560113.1| PREDICTED: peptide chain release factor 2-like [Brachypodium
distachyon]
Length = 459
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 144/234 (61%), Gaps = 6/234 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ LWDDP+K+ E+LV L + + V L D + + EEA I +L E +++ID GL + A
Sbjct: 123 DSTLWDDPSKAQELLVALTEVKEKVKILNDFKSQVEEADTIVKLTEELDSIDTGLLEEAS 182
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM+ LL GP D EGA +TI AG+ G + WA+ LL MYVRW +K+
Sbjct: 183 KIIKALNKALDNFEMTLLLSGPYDKEGAVITISAGAGGTDAQDWADMLLRMYVRWGEKQR 242
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E +A+GYLSGE G H ++ N + + A V
Sbjct: 243 YKSRVVEKSPGEEAGIKSATVEIEGRFAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 302
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVR 231
+V+PL E S D++I +EDL S G+ Q++ K ++ HIPTGIAVR
Sbjct: 303 EVMPLLPEESLDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVR 356
>gi|242050470|ref|XP_002462979.1| hypothetical protein SORBIDRAFT_02g035755 [Sorghum bicolor]
gi|241926356|gb|EER99500.1| hypothetical protein SORBIDRAFT_02g035755 [Sorghum bicolor]
Length = 363
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 143/234 (61%), Gaps = 6/234 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ E+LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 59 DSSLWDDPSKAQEILVSLTEVKDRVKLLNDFKLQVEEAETIVKLTEELDSIDTGLLEEAS 118
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 119 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 178
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GY+SGE G H ++ N + + A V
Sbjct: 179 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYISGEKGTHRIVRQSPFNAKGLRQTSFAGV 238
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVR 231
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAVR
Sbjct: 239 EVMPLLPEESMAVDIPEEDLDISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVR 292
>gi|46406291|emb|CAG25777.1| putative translation releasing factor 2 [Cucumis sativus]
Length = 453
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 145/234 (61%), Gaps = 6/234 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD +K+ +VL+ + D + L D + + EEA+ I +L E M+++D GL + A +
Sbjct: 121 SFWDDRSKAQKVLMAMTDVKDKIKMLTDFKTQVEEAETIVKLTEEMDSVDVGLLEEATKI 180
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++K LDQ+E+S+LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+ Y+
Sbjct: 181 IKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYK 240
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GY+SGE G H ++ N + + + V+V
Sbjct: 241 TRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 300
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+PL + S ++++ +EDL S G+ Q++ K A I HIPTG+ VR T
Sbjct: 301 MPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 354
>gi|225430898|ref|XP_002276037.1| PREDICTED: peptide chain release factor 2 [Vitis vinifera]
Length = 454
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 143/236 (60%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD K+ E L+ L D + L D + + E+A+ I +L E M++ID GL + A
Sbjct: 120 DSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAA 179
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 180 NIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQR 239
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V
Sbjct: 240 YKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGV 299
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E S D++I +EDL S G+ Q++ K A I HIPTG+ VR T
Sbjct: 300 EVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 355
>gi|297735238|emb|CBI17600.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 143/236 (60%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD K+ E L+ L D + L D + + E+A+ I +L E M++ID GL + A
Sbjct: 117 DSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAA 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 177 NIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V
Sbjct: 237 YKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E S D++I +EDL S G+ Q++ K A I HIPTG+ VR T
Sbjct: 297 EVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 352
>gi|226531101|ref|NP_001152654.1| peptide chain release factor 2 [Zea mays]
gi|195658609|gb|ACG48772.1| peptide chain release factor 2 [Zea mays]
gi|223950205|gb|ACN29186.1| unknown [Zea mays]
gi|414887031|tpg|DAA63045.1| TPA: peptide chain release factor 2 [Zea mays]
Length = 449
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 142/234 (60%), Gaps = 6/234 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ +LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 117 DSSLWDDPSKAQGILVSLTEVKDKVKLLNDFKLQIEEAETIVKLTEELDSIDTGLLEEAS 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 177 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 237 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVR 231
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAVR
Sbjct: 297 EVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVR 350
>gi|414887032|tpg|DAA63046.1| TPA: hypothetical protein ZEAMMB73_861498, partial [Zea mays]
Length = 421
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 142/234 (60%), Gaps = 6/234 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ +LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 174 DSSLWDDPSKAQGILVSLTEVKDKVKLLNDFKLQIEEAETIVKLTEELDSIDTGLLEEAS 233
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 234 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 293
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 294 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 353
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVR 231
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAVR
Sbjct: 354 EVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVR 407
>gi|414887030|tpg|DAA63044.1| TPA: hypothetical protein ZEAMMB73_861498 [Zea mays]
Length = 364
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 142/234 (60%), Gaps = 6/234 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDDP+K+ +LV L + V L D + + EEA+ I +L E +++ID GL + A
Sbjct: 117 DSSLWDDPSKAQGILVSLTEVKDKVKLLNDFKLQIEEAETIVKLTEELDSIDTGLLEEAS 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++K LD +EM++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+
Sbjct: 177 KIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++ N + + A V
Sbjct: 237 YKTRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVR 231
+V+PL E S + I +EDL S G+ Q++ K ++ HIPTGIAVR
Sbjct: 297 EVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVR 350
>gi|224101237|ref|XP_002312196.1| predicted protein [Populus trichocarpa]
gi|222852016|gb|EEE89563.1| predicted protein [Populus trichocarpa]
Length = 379
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 142/236 (60%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ +LWDD K+ E L+ L D + L + + K EEA+ I +L E M++ D G + A
Sbjct: 43 DSSLWDDRAKAQETLLALTDVKDKIKLLAEFKTKVEEAETIVKLTEEMDSTDAGFLEEAT 102
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD+YE+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 103 GIIKELNKALDKYELTQLLSGPYDKEGAVLSITAGAGGTDAQDWADMLLRMYVRWGEKQR 162
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GYLSGE G H ++ N + + + V
Sbjct: 163 YKTKVVESSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGV 222
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E S D+++ +EDL S+ G+ Q++ K A I HIPTG+ VR T
Sbjct: 223 EVMPLLPEESMDVELPEEDLEISTSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 278
>gi|356531868|ref|XP_003534498.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 456
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 142/234 (60%), Gaps = 6/234 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WD+ K+ E L LAD + L D + + E+A+ I L E M++ID GLF+ A
Sbjct: 122 SFWDNRGKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVSLTEEMDSIDRGLFEEASNL 181
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K +D+YE+++LL GP D EGA ++I AG+ G + WA+ LL MY+RW +K+ Y+
Sbjct: 182 IKELNKSIDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQKYK 241
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V+V
Sbjct: 242 TRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEV 301
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+PL + S +++I +EDL S G+ Q++ K A I HIPTG+ VR T
Sbjct: 302 MPLLPDESMNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 355
>gi|357507841|ref|XP_003624209.1| Peptide chain release factor [Medicago truncatula]
gi|355499224|gb|AES80427.1| Peptide chain release factor [Medicago truncatula]
Length = 475
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 143/234 (61%), Gaps = 6/234 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD K+ + L LAD + + L D + + E+A+ I L E ME++D GL++ A
Sbjct: 141 SFWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVMLTEEMESVDKGLYEEASSL 200
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K +D++E+++LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+ Y+
Sbjct: 201 IKELNKSIDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYK 260
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GYLSGE G H ++ N + + + V+V
Sbjct: 261 TRVVEKSLGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 320
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+PL E S +++I +EDL S G+ Q++ K A I HIPTG+ +R T
Sbjct: 321 MPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCT 374
>gi|255547508|ref|XP_002514811.1| peptide chain release factor, putative [Ricinus communis]
gi|223545862|gb|EEF47365.1| peptide chain release factor, putative [Ricinus communis]
Length = 458
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 140/236 (59%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
N + WDD + E L+ L D + L + + K E+A+ I +L E M++ID GL + A
Sbjct: 125 NTSFWDDRATAQETLLALTDVKDKIKLLTEFKTKVEDAETIVKLTEEMDSIDTGLLEEAS 184
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K L+++E+++LL GP D E A ++I AG+ G + WA+ LL MYVRW +K+
Sbjct: 185 SIIKELNKSLERFELTQLLSGPYDKESAVISITAGAGGTDAQDWADMLLRMYVRWGEKQR 244
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ RVV+K + G+KSA IE E YA+GYLSGE G H ++ N + + + +
Sbjct: 245 YKTRVVEKSPGEEAGIKSAMIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGI 304
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E S D+++ +EDL S G+ Q++ K A I HIPTG+ VR T
Sbjct: 305 EVMPLLPEESMDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 360
>gi|449442779|ref|XP_004139158.1| PREDICTED: peptide chain release factor 2-like [Cucumis sativus]
Length = 450
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 145/234 (61%), Gaps = 9/234 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+ WDD +K+ +VL+ + L+ V + + + EEA+ I +L E M+++D GL + A +
Sbjct: 121 SFWDDRSKAQKVLMGVV-ILECVGCV--MMIQVEEAETIVKLTEEMDSVDVGLLEEATKI 177
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++K LDQ+E+S+LL GP D EGA ++I AG+ G + WA+ LL MYVRW +K+ Y+
Sbjct: 178 IKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYK 237
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
RVV+K + G+KSATIE E YA+GY+SGE G H ++ N + + + V+V
Sbjct: 238 TRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEV 297
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+PL + S ++++ +EDL S G+ Q++ K A I HIPTG+ VR T
Sbjct: 298 MPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCT 351
>gi|168025410|ref|XP_001765227.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683546|gb|EDQ69955.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 136/234 (58%), Gaps = 6/234 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRA 64
LWDDP + L LA+ + ++ L+ K EEA+LI +L E E D GL + A
Sbjct: 73 TLWDDPDAAQRTLSDLAEVKENLDLLQQFENKVEEAQLIIELMGEKEGPDGGLVQEASEI 132
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+S LD++E++KLL GP D GA VTI AG+ G + WAE LL MY RWA+K+GY
Sbjct: 133 VSWLSNALDKFELAKLLSGPYDRRGARVTISAGAGGTDAQDWAEMLLRMYSRWAEKQGYT 192
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V++K + G+KS T E + +A+GYL+ E G H L+ N + + A V+V
Sbjct: 193 VKVMEKSPGEEAGIKSVTFEVDGRFAYGYLASEKGTHRLVRQSPFNAKGLRQTSFAGVEV 252
Query: 183 VPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+P+F E S D++I + +L ++ G+ Q++ K A I HIPTGIAVR T
Sbjct: 253 MPIFEEESLDVEIPETELEVTTTRAGGKGGQNVNKVETAVRIVHIPTGIAVRCT 306
>gi|30692913|ref|NP_851097.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
gi|13568392|emb|CAC36322.1| translation releasing factor2 [Arabidopsis thaliana]
gi|332006670|gb|AED94053.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
Length = 455
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 138/236 (58%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 119 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 178
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 179 GIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 238
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 239 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 298
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AVR T
Sbjct: 299 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCT 354
>gi|30692908|ref|NP_851096.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
gi|8777302|dbj|BAA96892.1| translation releasing factor RF-2 [Arabidopsis thaliana]
gi|15810391|gb|AAL07083.1| putative translation releasing factor RF-2 [Arabidopsis thaliana]
gi|21436317|gb|AAM51328.1| putative translation releasing factor RF-2 [Arabidopsis thaliana]
gi|21536944|gb|AAM61285.1| translation releasing factor RF-2 [Arabidopsis thaliana]
gi|332006668|gb|AED94051.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
Length = 456
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 138/236 (58%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 120 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 179
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 180 GIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 239
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 240 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 299
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AVR T
Sbjct: 300 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCT 355
>gi|297805172|ref|XP_002870470.1| HCF109 [Arabidopsis lyrata subsp. lyrata]
gi|297316306|gb|EFH46729.1| HCF109 [Arabidopsis lyrata subsp. lyrata]
Length = 453
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 138/236 (58%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 117 DTSFWDDRTKAQETLSALNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 176
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 177 GIIKELNKSLDRFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 236
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 237 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 296
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AVR T
Sbjct: 297 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCT 352
>gi|30692917|ref|NP_198466.2| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
gi|332006669|gb|AED94052.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana]
Length = 391
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 138/236 (58%), Gaps = 6/236 (2%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAY 62
+ + WDD TK+ E L L D + L + + E+A+ I +L E M++ D L + A
Sbjct: 120 DTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAM 179
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++K LD++E+++LL GP D EGA V I AG+ G + WA+ LL MY+RW +K+
Sbjct: 180 GIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQR 239
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +VV+ + G+KSAT+E E YA+GY+SGE G H ++ N + + + V
Sbjct: 240 YKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGV 299
Query: 181 DVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+V+PL E + ++I +EDL S G+ Q++ K A I HIPTG+AVR T
Sbjct: 300 EVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCT 355
>gi|209527406|ref|ZP_03275912.1| peptide chain release factor 2 [Arthrospira maxima CS-328]
gi|376006049|ref|ZP_09783392.1| Peptide chain release factor 2 (RF-2) [Arthrospira sp. PCC 8005]
gi|423067877|ref|ZP_17056667.1| peptide chain release factor 2 [Arthrospira platensis C1]
gi|209492141|gb|EDZ92490.1| peptide chain release factor 2 [Arthrospira maxima CS-328]
gi|375325573|emb|CCE19145.1| Peptide chain release factor 2 (RF-2) [Arthrospira sp. PCC 8005]
gi|406710620|gb|EKD05827.1| peptide chain release factor 2 [Arthrospira platensis C1]
Length = 339
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 131/233 (56%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD T++ + L L+D V+ +D R E+ IA+L E+E D L + A
Sbjct: 9 NFWDDQTQAQKTLQTLSDLKSVLQQQQDWRKTLEDTGAIAELLELED-DESLRQEAESNV 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D++E+ +LL GP D GA +TI AG+ G + WAE LL MY RW + +GY+
Sbjct: 68 VHLGRDIDRWELQQLLSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL E G H L+ N + + + A V+++
Sbjct: 128 HLAEISEGDEAGIKSATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIM 187
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
P+ E + +L I ++DL ++ G+ Q++ K A I HIPTGIAVR T
Sbjct: 188 PILDEGAINLDIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCT 240
>gi|302820696|ref|XP_002992014.1| hypothetical protein SELMODRAFT_134701 [Selaginella moellendorffii]
gi|300140136|gb|EFJ06863.1| hypothetical protein SELMODRAFT_134701 [Selaginella moellendorffii]
Length = 382
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 132/231 (57%), Gaps = 6/231 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRAS 65
W++ +K+ ++L +L + VN K R K ++A+ I +L EME+ D L A
Sbjct: 51 FWEERSKAQKILSELNEIKDRVNLYKTFRAKVDDAQCIVELLEEMESPDAALKLEAAETV 110
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D++E++KLL G D EGA +TI AG+ G + WAE LL MY RWA + G++
Sbjct: 111 SWITAAMDRFELNKLLSGTYDKEGARITITAGAGGTDAQDWAEMLLRMYQRWATRSGFKS 170
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VV+ + G+KSAT+E + YA+GY+SGE G H L+ N + + A V+V+
Sbjct: 171 TVVESSPGEEAGIKSATLEIDGRYAYGYISGEKGTHRLVRQSPFNSKGLRQTSFAGVEVM 230
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVR 231
PL E+ +++I + DL + S G+ + + A + HIPTGIA+R
Sbjct: 231 PLLEESEIEVEIPEGDLEITTCRSGGKGGQNVNKVETAVRVTHIPTGIALR 281
>gi|302762182|ref|XP_002964513.1| hypothetical protein SELMODRAFT_64370 [Selaginella moellendorffii]
gi|300168242|gb|EFJ34846.1| hypothetical protein SELMODRAFT_64370 [Selaginella moellendorffii]
Length = 366
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 132/231 (57%), Gaps = 6/231 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDYGLFKRAYRAS 65
W++ +K+ ++L +L + VN K R K ++A+ I +L EME+ D L A
Sbjct: 44 FWEERSKAQKILSELNEIKDRVNLYKTFRAKVDDAQCIVELLEEMESPDAALKLEAAETV 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D++E++KLL G D EGA +TI AG+ G + WAE LL MY RWA + G++
Sbjct: 104 SWITAAMDRFELNKLLSGTYDKEGARITITAGAGGTDAQDWAEMLLRMYQRWATRSGFKS 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VV+ + G+KSAT+E + YA+GY+SGE G H L+ N + + A V+V+
Sbjct: 164 TVVESSPGEEAGIKSATLEIDGRYAYGYISGEKGTHRLVRQSPFNSKGLRQTSFAGVEVM 223
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVR 231
PL E+ +++I + DL + S G+ + + A + HIPTGIA+R
Sbjct: 224 PLLEESEIEVEIPEGDLEITTCRSGGKGGQNVNKVETAVRVTHIPTGIALR 274
>gi|428779410|ref|YP_007171196.1| peptide chain release factor 2 [Dactylococcopsis salina PCC 8305]
gi|428693689|gb|AFZ49839.1| peptide chain release factor 2 [Dactylococcopsis salina PCC 8305]
Length = 367
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 7/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + L KL D + R +AE+ K I +L E EA D+ L++ A
Sbjct: 45 FWDDPETAQGTLQKLNDLKSAWEQYQKWRDRAEDTKAILELLETEA-DHALWEEATENLQ 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD++E+ +LL P D GA +TI G+ G + WA+ LL MY RW +K+GY
Sbjct: 104 TLNQALDRWELQQLLSDPYDERGAVLTINTGAGGTDAQDWAQMLLRMYSRWGEKQGYTVN 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E Y +GYL GE G H L+ N + + + A V+V+P
Sbjct: 164 LAELSEGDEAGIKSATLEIEGRYGYGYLKGEKGTHRLVRISPYNANGKRQTSFAGVEVMP 223
Query: 185 LFLETS-PDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ +T+ D+++ ++DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 224 MLDQTTIQDIELPEKDLEITTSRAGGKGGQNVNKVETAVRVVHLPTGIAVRCT 276
>gi|443316594|ref|ZP_21046032.1| peptide chain release factor 2 [Leptolyngbya sp. PCC 6406]
gi|442783787|gb|ELR93689.1| peptide chain release factor 2 [Leptolyngbya sp. PCC 6406]
Length = 364
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDPT++ ++ L D ++ ++ + E+A+ + +L + +A D L A +
Sbjct: 36 LWDDPTQAQGIMQSLNDYKAQLSQIQQWWGQLEDAEAVLELLDEDA-DEALLAEAQTSLS 94
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LDQ+E+ +LL GP D GA ++I AG+ G + WAE LL MY RW +++GY+
Sbjct: 95 DLDRALDQWELQQLLSGPYDKNGAVLSINAGAGGTDAQDWAEMLLRMYTRWGERQGYQVY 154
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+V+ + G+KS T+E + YAFGYL E G H L+ N + + + A V+V+P
Sbjct: 155 LVELSEGEEAGLKSVTLEIQGRYAFGYLKAEKGTHRLVRISPFNSNGKRQTSFAGVEVMP 214
Query: 185 LFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
+ L+ + L I D+DL S G+ + + A I H+PTGI+VR T
Sbjct: 215 I-LDRTVTLDIPDKDLEIKTSRSGGAGGQNVNKVETAVRITHLPTGISVRCT 265
>gi|383322914|ref|YP_005383767.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326083|ref|YP_005386936.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491967|ref|YP_005409643.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437235|ref|YP_005651959.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|339274267|dbj|BAK50754.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|359272233|dbj|BAL29752.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275403|dbj|BAL32921.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278573|dbj|BAL36090.1| peptide chain release factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407961451|dbj|BAM54691.1| peptide chain release factor 2 [Synechocystis sp. PCC 6803]
Length = 335
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 130/233 (55%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ ++L L ++ + + + ++++ I +L E+E D L A
Sbjct: 9 DFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED-DQALLTEAETTL 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD++E+ +LL GP D +GA++TI AG+ G + WAE LL MY RW++K+GY+
Sbjct: 68 EQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS T+E E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 128 HLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTSFAGVEVM 187
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
PL E + L I D+DL S+ G+ Q++ K A I H+PTG+AVR T
Sbjct: 188 PLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCT 240
>gi|354552620|ref|ZP_08971928.1| Peptide chain release factor 2 [Cyanothece sp. ATCC 51472]
gi|353555942|gb|EHC25330.1| Peptide chain release factor 2 [Cyanothece sp. ATCC 51472]
Length = 370
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 127/233 (54%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDDP + L +L D + + ++ E+ K IA+L E+E D L + A
Sbjct: 44 QFWDDPETAQTTLQELNDLKSQLEQYQRWCHQLEDTKAIAELLELED-DTTLRQEAQENI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 103 TQLNHNLDRWELQQLLSGIYDTKGAILTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A V+V+
Sbjct: 163 DLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P E ++I D+DL S+ G+ Q++ K ++ HIPTGIAVR T
Sbjct: 223 PALEEDDLKVEIPDKDLEISTSRSGGKGGQNVNKVETAVRVVHIPTGIAVRCT 275
>gi|7388055|sp|P74476.2|RF2_SYNY3 RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 372
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 130/233 (55%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ ++L L ++ + + + ++++ I +L E+E D L A
Sbjct: 46 DFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED-DQALLTEAETTL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD++E+ +LL GP D +GA++TI AG+ G + WAE LL MY RW++K+GY+
Sbjct: 105 EQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS T+E E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 165 HLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTSFAGVEVM 224
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
PL E + L I D+DL S+ G+ Q++ K A I H+PTG+AVR T
Sbjct: 225 PLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCT 277
>gi|428777383|ref|YP_007169170.1| peptide chain release factor 2 (bRF-2) [Halothece sp. PCC 7418]
gi|428691662|gb|AFZ44956.1| bacterial peptide chain release factor 2 (bRF-2) [Halothece sp. PCC
7418]
Length = 368
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 131/233 (56%), Gaps = 7/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + + L KL D + R +AE+ + I +L E EA D L++ A +
Sbjct: 45 FWDDPDSAQQTLQKLNDLKSALEQYHQWRDRAEDTQAIIELLETEA-DPALWEEATQNLE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + L+++E+ +LL P D GA +T+ G+ G + WA+ LL MY RWA+K GY+
Sbjct: 104 ALQQSLERWELQQLLCEPYDERGAVLTLNTGAGGTDAQDWAQMLLRMYSRWAEKRGYKAH 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSA++E E YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 164 LAELSEGDEAGIKSASLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETS-PDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+ +T+ D+++ ++DL ++ G+ Q++ K A I HIPTGIAVR T
Sbjct: 224 MLDQTTIQDIELPEKDLEITTSRAGGKGGQNVNKVETAVRILHIPTGIAVRCT 276
>gi|172039100|ref|YP_001805601.1| peptide chain release factor 2 [Cyanothece sp. ATCC 51142]
gi|171700554|gb|ACB53535.1| peptide chain release factor 2 [Cyanothece sp. ATCC 51142]
Length = 358
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 127/233 (54%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDDP + L +L D + + ++ E+ K IA+L E+E D L + A
Sbjct: 32 QFWDDPETAQTTLQELNDLKSQLEQYQRWCHQLEDTKAIAELLELED-DTTLRQEAQENI 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 91 TQLNHNLDRWELQQLLSGIYDTKGAILTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKV 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A V+V+
Sbjct: 151 DLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 210
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P E ++I D+DL S+ G+ Q++ K ++ HIPTGIAVR T
Sbjct: 211 PALEEDDLKVEIPDKDLEISTSRSGGKGGQNVNKVETAVRVVHIPTGIAVRCT 263
>gi|428770307|ref|YP_007162097.1| peptide chain release factor 2 (bRF-2) [Cyanobacterium aponinum PCC
10605]
gi|428684586|gb|AFZ54053.1| bacterial peptide chain release factor 2 (bRF-2) [Cyanobacterium
aponinum PCC 10605]
Length = 368
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+ K+ E L +L D + + + E+ K I +L EME +D LF A
Sbjct: 45 FWEAGEKAQETLQQLNDFKSLWDTFHQWQSSLEDTKAIVELLEME-LDSELFNEAQCNLK 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RWA+ + YR
Sbjct: 104 SLAQDLDKWELQQLLSGTYDQKGAILTINAGAGGTDAQDWAQMLLRMYTRWAENQNYRVT 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E + +YAFGYL GE G H L+ N + + + A VDV+P
Sbjct: 164 LTELSEGDEAGIKSATLEIDGKYAFGYLKGEKGTHRLVRISPYNANGKRQTSFAGVDVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
E + + I ++DL ++ G+ Q++ K A I HIPTGIAVR T
Sbjct: 224 SLGEEAIKIDIPEKDLEVTTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCT 275
>gi|126657098|ref|ZP_01728269.1| peptide chain release factor 2 [Cyanothece sp. CCY0110]
gi|126621641|gb|EAZ92351.1| peptide chain release factor 2 [Cyanothece sp. CCY0110]
Length = 358
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L KL D + + + E+ + IA+L E+E D L + A
Sbjct: 33 FWDEPETAQKTLQKLNDLKSQLEQYQQWCEQLEDTEAIAELLELED-DTTLRREAQENIT 91
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 92 QLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKVN 151
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A V+V+P
Sbjct: 152 LTELSEGDEAGIKSATLEIEGCYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 211
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+ E + I D+DL S+ G+ Q++ K A I H+PTGIAVR T
Sbjct: 212 MLEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVRIVHVPTGIAVRCT 263
>gi|218439666|ref|YP_002377995.1| peptide chain release factor 2 [Cyanothece sp. PCC 7424]
gi|218172394|gb|ACK71127.1| peptide chain release factor 2 [Cyanothece sp. PCC 7424]
Length = 360
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD P + L +L + + + + + E+AK I++L E+E D L + A
Sbjct: 36 FWDSPETAQSTLQELNELKSSLELYQQWQTQLEDAKAISELLELEE-DTSLLQEAQTNLQ 94
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ L+++E+ +LL GP D +G +TI AG+ G + WA LL MY RW +K GY+
Sbjct: 95 QLNHELERWELQQLLSGPYDAKGVLLTINAGAGGTDAQDWAAMLLRMYTRWGEKRGYKVH 154
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+V+ G+KSAT+E E YA+GYL GE G H L+ N + + + A V+++P
Sbjct: 155 LVESSEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEIMP 214
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
E + +++I ++DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 215 NIEEEALNVEIPEKDLEITTSRAGGKGGQNVNKVETAVRVVHLPTGIAVRCT 266
>gi|428773350|ref|YP_007165138.1| peptide chain release factor 2 (bRF-2) [Cyanobacterium stanieri PCC
7202]
gi|428687629|gb|AFZ47489.1| bacterial peptide chain release factor 2 (bRF-2) [Cyanobacterium
stanieri PCC 7202]
Length = 368
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 127/233 (54%), Gaps = 5/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD+ K+ ++L L + + + + E+ K I +L E+E D LF A
Sbjct: 44 QFWDEADKAQKILQDLNELKSSLAQITRWQKSLEDTKAIVELLELEEEDLELFTEAEHNL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ LD++E+ KLL GP D GA +TI AG+ G + WA+ LL MY RWA+K+ Y+
Sbjct: 104 TRLAQELDRWELRKLLSGPYDQRGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEKQDYKV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D G+KS ++E E YAFGYL GE G H L+ N + + + A VDV+
Sbjct: 164 TLTDMSEGDEAGIKSVSLEIEGRYAFGYLRGEKGTHRLVRISPFNANGKRQTSFAGVDVM 223
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
PL + D+ I D+DL ++ G+ Q++ K A I H+PTGIAVR T
Sbjct: 224 PLLENEALDVDIPDKDLEVTTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCT 276
>gi|425457642|ref|ZP_18837341.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9807]
gi|389800946|emb|CCI19823.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9807]
Length = 330
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSYLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|422303193|ref|ZP_16390547.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9806]
gi|425438279|ref|ZP_18818684.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9432]
gi|389676584|emb|CCH94420.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9432]
gi|389791881|emb|CCI12350.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9806]
Length = 336
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|425444731|ref|ZP_18824775.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9443]
gi|389735466|emb|CCI01036.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9443]
Length = 334
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTARSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|425463014|ref|ZP_18842477.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9808]
gi|440756279|ref|ZP_20935480.1| peptide chain release factor 2 [Microcystis aeruginosa TAIHU98]
gi|389823793|emb|CCI27765.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9808]
gi|440173501|gb|ELP52959.1| peptide chain release factor 2 [Microcystis aeruginosa TAIHU98]
Length = 336
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELES-DRALLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|425452562|ref|ZP_18832379.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 7941]
gi|389765600|emb|CCI08556.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 7941]
Length = 336
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +T+ AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTVNAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|308176991|ref|YP_003916397.1| peptide chain release factor 2 [Arthrobacter arilaitensis Re117]
gi|307744454|emb|CBT75426.1| peptide chain release factor 2 [Arthrobacter arilaitensis Re117]
Length = 371
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + V KL+ + L LR + ++ +++ +LAE+E D A +
Sbjct: 44 NLWDDPAAAQIVTSKLSHRQSELERLTRLRTRIDDLEVLVELAELED-DADTLDEAEKEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L E+ LL G D GA VTI++G+ G+ +AE LL MY+RWA++ GY+
Sbjct: 103 VSIQKSLADLEIVTLLSGEFDSRGAVVTIRSGAGGVDAADFAEMLLRMYLRWAERRGYKA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+VV
Sbjct: 163 TVMDTSYAEEAGLKSATFEIDAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + ++ +F S G+ + A + HIPTG+ V
Sbjct: 223 PL-IEQTDTIEIPESEIRVDVFRSSGPGGQSVNTTDSAVRMTHIPTGVVV 271
>gi|425469717|ref|ZP_18848630.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9701]
gi|389880407|emb|CCI38837.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9701]
Length = 336
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELES-DRTLLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|443327861|ref|ZP_21056468.1| peptide chain release factor 2 [Xenococcus sp. PCC 7305]
gi|442792472|gb|ELS01952.1| peptide chain release factor 2 [Xenococcus sp. PCC 7305]
Length = 314
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 119/200 (59%), Gaps = 6/200 (3%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
++A+ IA+L E+E D L + A + + + + LD +E+ +LL G D GA +TI AG+
Sbjct: 22 DDAQAIAELLELET-DQALAEEAQTSLIQLKQELDLWELQQLLSGTYDSRGAILTINAGA 80
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WAE LL MY RW +K+GY+ R+V++ G+KSAT+E E YA+GYL E
Sbjct: 81 GGTDAQDWAEMLLRMYTRWGEKQGYKVRLVEESAGDEAGIKSATLEIEGRYAYGYLKAEK 140
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIA 215
G H L+ N + + + A ++V+P + S +L+I ++DL ++ G+ Q++
Sbjct: 141 GTHRLVRISPFNANGKRQTSFAGIEVMPNLGDESIELEIPEKDLEITTSRAGGKGGQNVN 200
Query: 216 K--PAACIQHIPTGIAVRGT 233
K A I H+PTG+AVR T
Sbjct: 201 KVETAVRIVHLPTGLAVRCT 220
>gi|390439243|ref|ZP_10227653.1| Peptide chain release factor 2 [Microcystis sp. T1-4]
gi|389837370|emb|CCI31777.1| Peptide chain release factor 2 [Microcystis sp. T1-4]
Length = 336
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELES-DRTLLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|67920292|ref|ZP_00513812.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 8501]
gi|67857776|gb|EAM53015.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 8501]
Length = 358
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD P + L +L D + + + ++ K IA+L E+E D L + A
Sbjct: 32 QFWDQPETAQTTLQELNDLKSQLEQYQQWCLQLDDTKAIAELLELED-DATLRQEAEDNI 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 91 IQLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKV 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A ++++
Sbjct: 151 HLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEIM 210
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P E + I D+DL S+ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 211 PALEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVRVVHVPTGIAVRCT 263
>gi|416376039|ref|ZP_11683417.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 0003]
gi|357266445|gb|EHJ15072.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 0003]
Length = 358
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WD P + L +L D + + + ++ K IA+L E+E D L + A
Sbjct: 32 QFWDQPETAQTTLQELNDLKSQLEQYQQWCLQLDDTKAIAELLELED-DATLRQEAEDNI 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++ LD++E+ +LL G D +GA +TI AG+ G + WA+ LL MY RW +++GY+
Sbjct: 91 IQLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQDWAQMLLRMYTRWGEQQGYKV 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YAFGYL GE G H L+ N + + + A ++++
Sbjct: 151 HLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEIM 210
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P E + I D+DL S+ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 211 PALEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVRVVHVPTGIAVRCT 263
>gi|56751121|ref|YP_171822.1| peptide chain release factor 2 [Synechococcus elongatus PCC 6301]
gi|56686080|dbj|BAD79302.1| peptide chain release factor RF-2 [Synechococcus elongatus PCC
6301]
Length = 304
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
Query: 44 IAQLAEMEAI--DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGI 101
I + E+ AI D LF+ A + + LDQ+E+ +LL GP D EGA ++I AG+ G
Sbjct: 10 ITAILELLAIEPDPALFEEAETNVQRLQRELDQWELQQLLSGPYDAEGAILSINAGAGGT 69
Query: 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161
+ WAE LL MY RWA+ +GY+ R+ + + G+KS T+E E +YA+GYL E G H
Sbjct: 70 DAQDWAEMLLRMYTRWAEDQGYKVRITELSEGEEAGIKSVTLEIEGKYAYGYLKAEKGTH 129
Query: 162 CLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK-- 216
L+ N + + + A V+V+P+ L+T DL+I ++DL ++ G+ Q++ K
Sbjct: 130 RLVRISPFNANDKRQTSFAGVEVMPV-LDTDIDLEIPEKDLEITTSRAGGKGGQNVNKVE 188
Query: 217 PAACIQHIPTGIAVRGT 233
A I H+PTG+AVR T
Sbjct: 189 TAVRIVHLPTGLAVRCT 205
>gi|81299215|ref|YP_399423.1| peptide chain release factor 2 [Synechococcus elongatus PCC 7942]
gi|81168096|gb|ABB56436.1| bacterial peptide chain release factor 2 (bRF-2) [Synechococcus
elongatus PCC 7942]
Length = 304
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
Query: 44 IAQLAEMEAI--DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGI 101
I + E+ AI D LF+ A + + LDQ+E+ +LL GP D EGA ++I AG+ G
Sbjct: 10 ITAILELLAIEPDPALFEEAETNVQRLQRELDQWELQQLLSGPYDAEGAILSINAGAGGT 69
Query: 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161
+ WAE LL MY RWA+ +GY+ R+ + + G+KS T+E E +YA+GYL E G H
Sbjct: 70 DAQDWAEMLLRMYTRWAEDQGYKVRITELSEGEEAGIKSVTLEIEGKYAYGYLKAEKGTH 129
Query: 162 CLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK-- 216
L+ N + + + A V+V+P+ L+T DL+I ++DL ++ G+ Q++ K
Sbjct: 130 RLVRISPFNANDKRQTSFAGVEVMPV-LDTDIDLEIPEKDLEITTSRAGGKGGQNVNKVE 188
Query: 217 PAACIQHIPTGIAVRGT 233
A I H+PTG+AVR T
Sbjct: 189 TAVRIVHLPTGLAVRCT 205
>gi|443667516|ref|ZP_21133963.1| peptide chain release factor 2 [Microcystis aeruginosa DIANCHI905]
gi|159027417|emb|CAO86901.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443331007|gb|ELS45688.1| peptide chain release factor 2 [Microcystis aeruginosa DIANCHI905]
Length = 330
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 126/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELES-DRALLEEATDNIT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDPKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDVVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|334118073|ref|ZP_08492163.1| peptide chain release factor 2 [Microcoleus vaginatus FGP-2]
gi|333460058|gb|EGK88668.1| peptide chain release factor 2 [Microcoleus vaginatus FGP-2]
Length = 377
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 132/232 (56%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ E L +L D + + + E+AK I +L E+EA D LF+ A +
Sbjct: 45 FWDDQDRAQETLQELNDLKSHLEQYSNWQTSLEDAKAILELLELEA-DESLFQEASSSLS 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LDQ+E+ +LL GP D GA +TI AG+ G + WAE LL MY RW + +GY+
Sbjct: 104 QLTRELDQWELQQLLSGPYDEGGAVLTINAGAGGTDAQDWAEMLLRMYTRWGESQGYKVH 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+++ + GVKSA++E YA+GY+ E G H L+ N + + + A V+V+P
Sbjct: 164 LMEISEGEEAGVKSASLEIVGRYAYGYMRSEKGTHRLVRISPFNANDKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+ L+ S L I ++DL ++ G+ Q++ K A I H+PTG+AVR T
Sbjct: 224 I-LDRSVQLDIPEKDLEVTTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCT 274
>gi|291568918|dbj|BAI91190.1| peptide chain release factor 2 [Arthrospira platensis NIES-39]
Length = 316
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 21 LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80
++D V+ +D R E+ IA+L E+E D L + A + + + +D++E+ +L
Sbjct: 1 MSDLKSVLQQQQDWRKTLEDTGAIAELLELED-DESLRQEAESNVVHLGRDIDRWELQQL 59
Query: 81 LRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKS 140
L GP D GA +TI AG+ G + WAE LL MY RW + +GY+ + + G+KS
Sbjct: 60 LSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAELSEGDEAGIKS 119
Query: 141 ATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDE 198
AT+E E YA+GYL E G H L+ N + + + A V+++P+ E + +L I ++
Sbjct: 120 ATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPILDEGAINLDIPEK 179
Query: 199 DLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
DL ++ G+ Q++ K A I HIPTGIAVR T
Sbjct: 180 DLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCT 217
>gi|218248175|ref|YP_002373546.1| hypothetical protein PCC8801_3422 [Cyanothece sp. PCC 8801]
gi|226739124|sp|B7K0A6.1|RF2_CYAP8 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|218168653|gb|ACK67390.1| hypothetical protein PCC8801_3422 [Cyanothece sp. PCC 8801]
Length = 365
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D V + E+ K IA+L E+E D L + A
Sbjct: 44 DFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE-DATLNEEAEANL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +++GY+
Sbjct: 103 TQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A ++V+
Sbjct: 163 HLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P E ++I ++DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 223 PALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 275
>gi|257060501|ref|YP_003138389.1| hypothetical protein Cyan8802_2694 [Cyanothece sp. PCC 8802]
gi|256590667|gb|ACV01554.1| hypothetical protein Cyan8802_2694 [Cyanothece sp. PCC 8802]
Length = 375
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D V + E+ K IA+L E+E D L + A
Sbjct: 54 DFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE-DATLNEEAEANL 112
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +++GY+
Sbjct: 113 TQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKV 172
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A ++V+
Sbjct: 173 HLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEVM 232
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P E ++I ++DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 233 PALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 285
>gi|427723106|ref|YP_007070383.1| peptide chain release factor 2 (bRF-2) [Leptolyngbya sp. PCC 7376]
gi|427354826|gb|AFY37549.1| bacterial peptide chain release factor 2 (bRF-2) [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++ + + +L D ++ + + E+A+ IA+L E+E D L A +
Sbjct: 46 FWENQDTAQTTMQELNDLKANLDQYEQWHSQFEDAEAIAELLELED-DPALLDEAIQNLE 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD++E+ ++L G D GA +TI AG+ G + WAE LL MY RW++K+GY+ +
Sbjct: 105 TLQKELDRWELQQMLSGEYDNNGAVLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVK 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E YAFGYL E G H L+ N + + + A ++++P
Sbjct: 165 LAEISEGDEAGLKSATLEIEGRYAFGYLKSEKGTHRLVRISPFNANGKRQTSFAGIEIMP 224
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K A I H+PTGIAVR T
Sbjct: 225 VLGDDAVKVEIPDKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCT 276
>gi|116072022|ref|ZP_01469290.1| peptide chain release factor 2 [Synechococcus sp. BL107]
gi|116065645|gb|EAU71403.1| peptide chain release factor 2 [Synechococcus sp. BL107]
Length = 356
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++AK +L E+EA D + A +
Sbjct: 26 DFWNDQQNAQKQMRRLDEVKAQLKQLADWRSAIDDAKATLELYELEA-DEDMLGEAQQGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ R
Sbjct: 85 TELRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMRV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KSATIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 145 TIDEISEGEEAGIKSATIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE D+ I D+DL + S G+ + + A IQH+PTG+AVR T
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRIQHLPTGLAVRCT 256
>gi|78185691|ref|YP_378125.1| peptide chain release factor 2 [Synechococcus sp. CC9902]
gi|78169985|gb|ABB27082.1| bacterial peptide chain release factor 2 (bRF-2) [Synechococcus sp.
CC9902]
Length = 356
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++AK +L E+EA D + A +
Sbjct: 26 DFWNDQQNAQKQMRRLDEVKAQLQQLADWRSAIDDAKATLELYELEA-DEEMLGEAQQGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ R
Sbjct: 85 TELRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMRV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KSATIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 145 TIDEISEGEEAGIKSATIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE D+ I D+DL + S G+ + + A IQH+PTG+AVR T
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRIQHLPTGLAVRCT 256
>gi|307111728|gb|EFN59962.1| hypothetical protein CHLNCDRAFT_133064 [Chlorella variabilis]
Length = 426
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+ ++ VL +L + V AL+ + E+ + +L EME A S
Sbjct: 83 DLWEQRARATAVLQQLTALREEVAALERFCGQLEDLGVAMELLEMEDEAGAQAMAAEAGS 142
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ L+ +E+ +LL GP D GA +TI+AG+ G + WAE L MY+RWA+K+G+
Sbjct: 143 ICDGLAAGLEAWELRRLLGGPYDDRGAVLTIQAGAGGTDAQDWAEMLERMYLRWAEKQGH 202
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
R RVVD+ + G+KS IE + YA+GYL GE G H L+ N + + A V+
Sbjct: 203 RTRVVDRQQGEEAGIKSVEIEVDGRYAYGYLHGEKGTHRLVRQSPFNAKAARQTSFAAVE 262
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P+ E ++++ + DL S G+ + + A I+H+PTGIAV+
Sbjct: 263 VMPMLGELVDEVELPESDLEITTMRSAGAGGQNVNKVETAVRIKHLPTGIAVK 315
>gi|307155327|ref|YP_003890711.1| hypothetical protein Cyan7822_5564 [Cyanothece sp. PCC 7822]
gi|306985555|gb|ADN17436.1| hypothetical protein Cyan7822_5564 [Cyanothece sp. PCC 7822]
Length = 370
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD P + L +L + + + + + E+AK I +L E+E D L + A
Sbjct: 45 FWDSPDMAQTTLQELNELKSALELYQQWQTQLEDAKAIVELLELEE-DTSLLEEAQTNLE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ L+++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +K+GY+
Sbjct: 104 QLNHELERWELQQLLSGLYDAKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEKQGYKVH 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 164 LAEISEGDEAGLKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ +++I ++DL ++ G+ Q++ K ++ HIPTG+AVR T
Sbjct: 224 NLGVEAVNVEIPEKDLEITTSRSGGKGGQNVNKVETAVRVVHIPTGLAVRCT 275
>gi|254422250|ref|ZP_05035968.1| peptide chain release factor 2 [Synechococcus sp. PCC 7335]
gi|196189739|gb|EDX84703.1| peptide chain release factor 2 [Synechococcus sp. PCC 7335]
Length = 345
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D ++ ++ E+++ I +L ++E D L A
Sbjct: 16 DFWDEQESAQKSLQELNDYKANLDQVEGWSTSLEDSEAILELLDLEQ-DESLLLEAESTV 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK LDQ+E+ +LL GP D GA +TI AG+ G + W+E LL MY RW+++ GY+
Sbjct: 75 NRLSKELDQWELQQLLSGPYDKAGAVLTINAGAGGTDAQDWSEMLLRMYTRWSEQNGYQF 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++++K G+KS T+E YA+GYL GE G H L+ N + + + A V+V+
Sbjct: 135 KLIEKSEGDEAGLKSVTMEVYGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVM 194
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P+ L+ +L I D+DL S G+ + + A I H+PT I+VR T
Sbjct: 195 PI-LDQKVELDIPDKDLEIKTSRSGGAGGQNVNKVETAVRITHLPTSISVRCT 246
>gi|440684132|ref|YP_007158927.1| Peptide chain release factor 2 [Anabaena cylindrica PCC 7122]
gi|428681251|gb|AFZ60017.1| Peptide chain release factor 2 [Anabaena cylindrica PCC 7122]
Length = 373
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD T++ + L +L D + ++ +++ +L E+E D L + A
Sbjct: 45 FWDDQTQAQQTLQELNDLKDHLEQYYQWHANLDDTRVVIELLELET-DESLLQEAESTIT 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LDQ+E+ +LL GP D++GA +TI AG+ G + WA L+ MY RWA+ GY+
Sbjct: 104 KLNRELDQWELQQLLSGPYDIQGAVLTINAGAGGTDAQDWAFMLMRMYTRWAEDHGYKVI 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ ++ G+KSAT+E YA+GYL E G H L+ N + + + A V+V+P
Sbjct: 164 LSEESEGDEAGIKSATLEITGRYAYGYLRSEMGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
++ + L I ++DL ++ G+ Q++ K A I H+PTG+AVR T
Sbjct: 224 Q-IDNTVKLDIPEKDLEITTTRSGGKGGQNVNKVETAVRIVHLPTGLAVRCT 274
>gi|409993206|ref|ZP_11276356.1| peptide chain release factor 2 [Arthrospira platensis str. Paraca]
gi|409935920|gb|EKN77434.1| peptide chain release factor 2 [Arthrospira platensis str. Paraca]
Length = 309
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 6/207 (2%)
Query: 32 KDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGAS 91
+D R E+ IA+L E+E D L + A + + + +D++E+ +LL GP D GA
Sbjct: 5 QDWRKTLEDTGAIAELLELED-DESLRQEAESNVVHLGRDIDRWELQQLLSGPYDRSGAV 63
Query: 92 VTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAF 151
+TI AG+ G + WAE LL MY RW + +GY+ + + G+KSAT+E E YA+
Sbjct: 64 LTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAELSEGDEAGIKSATLEMEGPYAY 123
Query: 152 GYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPG 209
GYL E G H L+ N + + + A V+++P+ E + +L I ++DL ++ G
Sbjct: 124 GYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPILDEGAINLDIPEKDLEITTSRAGG 183
Query: 210 E-RQSIAK--PAACIQHIPTGIAVRGT 233
+ Q++ K A I HIPTGIAVR T
Sbjct: 184 KGGQNVNKVETAVRIVHIPTGIAVRCT 210
>gi|170076819|ref|YP_001733457.1| peptide chain release factor 2 [Synechococcus sp. PCC 7002]
gi|169884488|gb|ACA98201.1| peptide chain release factor 2 [Synechococcus sp. PCC 7002]
Length = 359
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 127/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + ++L +L + V + + + E+A IA+L EA D L A
Sbjct: 34 FWEDQQGAQDILQELTELKGTVAQYQQWQGQFEDAAAIAELL-TEAEDPALLTEAMENLD 92
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ K L+++E+ ++L G D GA +TI AG+ G + WAE LL MY RW++K+GY+ R
Sbjct: 93 DLQKELNRWELQQMLSGEYDNLGAVLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVR 152
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSAT+E YAFGYL E G H L+ N + + + A V+V+P
Sbjct: 153 LAEISEGDEAGLKSATLEVTGRYAFGYLKHEKGTHRLVRISPFNANGKRQTSFAGVEVMP 212
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
+ + + + I ++DL ++ G+ Q++ K A I H+PTG+AVR T
Sbjct: 213 ILGDNAVKVDIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGVAVRCT 264
>gi|16331171|ref|NP_441899.1| peptide chain release factor 2 [Synechocystis sp. PCC 6803]
gi|451815327|ref|YP_007451779.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|1653665|dbj|BAA18577.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|451781296|gb|AGF52265.1| peptide chain release factor [Synechocystis sp. PCC 6803]
Length = 288
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 110/193 (56%), Gaps = 6/193 (3%)
Query: 46 QLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEI 105
+L E+E D L A + K LD++E+ +LL GP D +GA++TI AG+ G +
Sbjct: 2 ELLELED-DQALLTEAETTLEQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQD 60
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WAE LL MY RW++K+GY+ + + G+KS T+E E YA+GYL E G H L+
Sbjct: 61 WAEMLLRMYTRWSEKQGYKVHLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVR 120
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAAC 220
N + + + A V+V+PL E + L I D+DL S+ G+ Q++ K A
Sbjct: 121 ISPFNANGKRQTSFAGVEVMPLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVR 180
Query: 221 IQHIPTGIAVRGT 233
I H+PTG+AVR T
Sbjct: 181 IVHLPTGLAVRCT 193
>gi|166363701|ref|YP_001655974.1| peptide chain release factor 2 [Microcystis aeruginosa NIES-843]
gi|425440004|ref|ZP_18820315.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9717]
gi|425467766|ref|ZP_18847045.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9809]
gi|166086074|dbj|BAG00782.1| peptide chain release factor 2 [Microcystis aeruginosa NIES-843]
gi|389719660|emb|CCH96545.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9717]
gi|389829362|emb|CCI29359.1| Peptide chain release factor 2 [Microcystis aeruginosa PCC 9809]
Length = 330
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 6/232 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ + + L +L + + + + E+ K I +L E+E+ D L + A
Sbjct: 7 FWDNLDTAQKTLQELNECKSSLETYQGWCGQLEDTKAIIELLELES-DRTLLEEATDNLT 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D +GA +TI AG+ G + W E LL MY RWA+K+GY+
Sbjct: 66 HLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVT 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KS TIE YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 126 LAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMP 185
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
+ + + ++I D+DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 186 ILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 237
>gi|354565707|ref|ZP_08984881.1| Peptide chain release factor 2 [Fischerella sp. JSC-11]
gi|353548580|gb|EHC18025.1| Peptide chain release factor 2 [Fischerella sp. JSC-11]
Length = 372
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 126/235 (53%), Gaps = 13/235 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ L +L D + + + E+ K + +L E+E A
Sbjct: 45 FWEDQVKAQGTLQELNDLKAHLQQYEQWQSSLEDTKAVLELLELET----DEALLQEAEA 100
Query: 67 DVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
V+KL LDQ+E+ +LL GP D +GA +TI AG+ G + WAE LL MY RWA+ GY
Sbjct: 101 TVTKLNRELDQWELQQLLSGPYDDKGAVLTINAGAGGTDAQDWAEMLLRMYTRWAENHGY 160
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D+ G+KSATIE YA+GYL ETG H L+ N + + + A V+
Sbjct: 161 KVNLTDESEGDEAGIKSATIEITGRYAYGYLRSETGTHRLVRISPFNANGKRQTSFAGVE 220
Query: 182 VVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
V+P L+ S L+I ++DL ++ G+ Q++ K A I HIPTGIAVR T
Sbjct: 221 VMPQ-LDNSVQLEIPEKDLEITTSRSGGKGGQNVNKVETAVRIVHIPTGIAVRCT 274
>gi|427721077|ref|YP_007069071.1| peptide chain release factor 2 [Calothrix sp. PCC 7507]
gi|427353513|gb|AFY36237.1| peptide chain release factor 2 [Calothrix sp. PCC 7507]
Length = 370
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D T++ + L +L + + E+ K + +L E+E D GL + A
Sbjct: 45 FWVDQTQAQQTLQELNNLKDHLAQYHQWHVSLEDTKAVVELLELET-DEGLLQEAESTIT 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LDQ+E+ +LL G D EGA +TI AG+ G + WA L+ MY RWA+ GY+
Sbjct: 104 KLNRELDQWELQQLLSGLYDAEGAVLTISAGAGGTDAQDWAFMLMRMYTRWAEAHGYKVT 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ ++ G+KSAT+E YA+GYL E G H L+ N + + + A V+V+P
Sbjct: 164 LAEESKGDEAGIKSATLEITGRYAYGYLRSEMGTHRLVRISPFNANGKRQTSFAGVEVMP 223
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
++ S L I ++DL ++ G+ Q++ K ++ H+PTG+AVR T
Sbjct: 224 Q-IDNSVQLDIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGLAVRCT 274
>gi|428300612|ref|YP_007138918.1| peptide chain release factor 2 (bRF-2) [Calothrix sp. PCC 6303]
gi|428237156|gb|AFZ02946.1| bacterial peptide chain release factor 2 (bRF-2) [Calothrix sp. PCC
6303]
Length = 372
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 9/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+D T++ + L +L D LKV ++ E+ + + +L E+E D GL + A
Sbjct: 45 FWNDQTEAQQTLREL-DELKVHLSQYHGWLSSVEDTRAVVELLELET-DEGLLEEATSTV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +++ LDQ+E+ +LL D GA +TI AG+ G + WAE LL MY RW + Y+
Sbjct: 103 IRLNRELDQWELEQLLSNEYDHLGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEDHNYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ G+KSATIE YA+GYL E G H L+ N + + + A V+V+
Sbjct: 163 HLIEISEGDEAGLKSATIEVTGRYAYGYLRSEMGTHRLVRISPFNANGKRQTSFAGVEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P +++S L I ++DL ++ G+ Q++ K ++ HIPTG+AVR T
Sbjct: 223 PQ-IDSSVQLDIPEKDLDITTSRAGGKGGQNVNKVETAVRVVHIPTGVAVRCT 274
>gi|284929451|ref|YP_003421973.1| peptide chain release factor 2 [cyanobacterium UCYN-A]
gi|284809895|gb|ADB95592.1| bacterial peptide chain release factor 2 (bRF-2) [cyanobacterium
UCYN-A]
Length = 344
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+P + ++ +L++ ++ K E+ K+I L ++ D L + A
Sbjct: 19 NFWDNPETAQKISQELSNFKSQLDQYHQWYNKLEDTKIIMDLLILDN-DKSLLEEAQNNI 77
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD +++ +LL G D++GA + I G G + W+E LL MY RW + +GY+
Sbjct: 78 TQLKKNLDNWDLQQLLSGTYDIKGAILNINTGVGGTDAQDWSEMLLRMYRRWGESQGYKV 137
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ G+KSAT+EFE YAFGYL GE G H L+ N + + + ++V+
Sbjct: 138 NLVEISEGDEAGIKSATLEFEGCYAFGYLKGEKGTHRLVRISPFNANGKRQTSFTGIEVM 197
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
P ++I D+DL ++ G+ Q++ K A I H+PTGI+VR T
Sbjct: 198 PKLEGNDIKVEIPDKDLEITTTRSGGKGGQNVNKVETAVRIVHLPTGISVRCT 250
>gi|218196674|gb|EEC79101.1| hypothetical protein OsI_19733 [Oryza sativa Indica Group]
gi|222631380|gb|EEE63512.1| hypothetical protein OsJ_18328 [Oryza sativa Japonica Group]
Length = 195
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 82/104 (78%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++R NLWD+P KS+E L LAD+++VV+ LKDLRYKAEEAKLI+QL+EM+ I+ LFK+
Sbjct: 90 VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ 149
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPE 104
AY+ S+D ++ LD+Y+M KLL+GP D EGA + + AGS+G E
Sbjct: 150 AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSDGAASE 193
>gi|256832101|ref|YP_003160828.1| peptide chain release factor 2 [Jonesia denitrificans DSM 20603]
gi|256685632|gb|ACV08525.1| peptide chain release factor 2 [Jonesia denitrificans DSM 20603]
Length = 369
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ +V L+ + + ++ ++ + ++ +++ ++A +E D A
Sbjct: 43 DLWDDPAQAQQVTSALSLAQNELKRIESMQQRIDDLEVLVEMA-VEGNDADTLHEAEDEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LDQ E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 102 AAIKKDLDQLEVRTLLSGEYDAREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+VV
Sbjct: 162 AVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D ++ +F S G+ + A + HIPTGI V
Sbjct: 222 PL-IEQTDHVEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|75908996|ref|YP_323292.1| peptide chain release factor 2 [Anabaena variabilis ATCC 29413]
gi|75702721|gb|ABA22397.1| bacterial peptide chain release factor 2 (bRF-2) [Anabaena
variabilis ATCC 29413]
Length = 292
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +L E+E D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G
Sbjct: 1 MVELLELET-DEALLQEAESTITKLNRDLDQWELQQLLSGPYDAEGAVLTINAGAGGTDA 59
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WA LL MY RWA+ +GY+ + ++ G+KSAT+E YA+GYL ETG H L
Sbjct: 60 QDWAFMLLRMYTRWAEDQGYKVALAEESEGDEAGIKSATLEITGRYAYGYLRSETGTHRL 119
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAAC 220
+ N + + + A V+V+P L+ + L I D+DL ++ G+ Q++ K
Sbjct: 120 VRISPFNANGKRQTSFAGVEVMPQ-LDNTVQLDIPDKDLEITTTRSGGKGGQNVNKVETA 178
Query: 221 IQ--HIPTGIAVRGT 233
++ H+PTGIAVR T
Sbjct: 179 VRVVHLPTGIAVRCT 193
>gi|17227769|ref|NP_484317.1| peptide chain release factor 2 [Nostoc sp. PCC 7120]
gi|17135251|dbj|BAB77797.1| peptide chain release factor [Nostoc sp. PCC 7120]
Length = 292
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +L E+E D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G
Sbjct: 1 MVELLELET-DEALLQEAESTITKLNRDLDQWELQQLLSGPYDAEGAVLTINAGAGGTDA 59
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WA LL MY RWA+ +GY+ + ++ G+KSAT+E YA+GYL ETG H L
Sbjct: 60 QDWAFMLLRMYTRWAEDQGYKVALAEESEGDEAGIKSATLEITGRYAYGYLRSETGTHRL 119
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAAC 220
+ N + + + A V+V+P L+ + L I D+DL ++ G+ Q++ K
Sbjct: 120 VRISPFNANGKRQTSFAGVEVMPQ-LDNTVQLDIPDKDLEITTTRSGGKGGQNVNKVETA 178
Query: 221 IQ--HIPTGIAVRGT 233
++ H+PTGIAVR T
Sbjct: 179 VRVVHLPTGIAVRCT 193
>gi|158336840|ref|YP_001518014.1| peptide chain release factor 2 [Acaryochloris marina MBIC11017]
gi|158307081|gb|ABW28698.1| peptide chain release factor 2 [Acaryochloris marina MBIC11017]
Length = 304
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 120/211 (56%), Gaps = 7/211 (3%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+ L+D + ++A+ + +L ++E D GL + A +++ LDQ+E+ +LL GP D
Sbjct: 1 MTQLQDWQGTLDDAEALVELLQLEE-DAGLLQEAAGNLRQLNQQLDQWELQQLLSGPYDK 59
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
GA +TI G+ G + WAE LL MY RW++++GY+ + + G+KSAT+E E
Sbjct: 60 VGAVLTINTGAGGTDAQDWAEMLLRMYTRWSERQGYKVHLAELSEGDEAGIKSATLEVEG 119
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSP 205
YA+GYL E G H L+ N + + + A ++V+P L+ +L I D DL ++
Sbjct: 120 RYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPQ-LDHEVELDIPDTDLEITTS 178
Query: 206 SLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
G+ Q++ K A I H+PTG+AVR T
Sbjct: 179 RSGGKGGQNVNKVETAVRIVHVPTGLAVRCT 209
>gi|443323118|ref|ZP_21052128.1| peptide chain release factor 2 [Gloeocapsa sp. PCC 73106]
gi|442787173|gb|ELR96896.1| peptide chain release factor 2 [Gloeocapsa sp. PCC 73106]
Length = 302
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 114/200 (57%), Gaps = 6/200 (3%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
E+ K IA+L E EA D L + A +++ LD++E+ +LL GP D +GA +TI AG+
Sbjct: 12 EDTKAIAELLEQEA-DASLQQEAVTTISNLNLALDRWELQQLLSGPYDAKGAVITINAGA 70
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + W E LL MY RW+ K+GY+ + + G+KS T+E E YAFG L GE
Sbjct: 71 GGTDAQDWVEMLLRMYTRWSQKQGYKVHLAELSEGDEAGIKSVTLEIEGRYAFGSLKGEK 130
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIA 215
G H L+ N + + + A V+V+P + +++I ++DL ++ G+ Q++
Sbjct: 131 GTHRLVRISPFNANGKRQTSFAGVEVMPALGLDAVNVEIPEKDLEITTSRSGGKGGQNVN 190
Query: 216 KPAACIQ--HIPTGIAVRGT 233
K ++ H+PTG+AVR T
Sbjct: 191 KVETAVRVVHLPTGLAVRCT 210
>gi|359460154|ref|ZP_09248717.1| peptide chain release factor 2 [Acaryochloris sp. CCMEE 5410]
Length = 304
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 120/211 (56%), Gaps = 7/211 (3%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+ L+D + ++A+ + +L ++E D GL + A +++ LDQ+E+ +LL GP D
Sbjct: 1 MTQLQDWQGTLDDAEALVELLQLEE-DAGLLQEAAGNLEQLNQQLDQWELQQLLSGPYDK 59
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
GA +TI G+ G + WAE LL MY RW++++GY+ + + G+KSAT+E E
Sbjct: 60 VGAVLTINTGAGGTDAQDWAEMLLRMYTRWSERQGYKVHLAELSEGDEAGIKSATLEVEG 119
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSP 205
YA+GYL E G H L+ N + + + A ++V+P L+ +L I D DL ++
Sbjct: 120 RYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPQ-LDHEVELDIPDTDLEITTS 178
Query: 206 SLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
G+ Q++ K A I H+PTG+AVR T
Sbjct: 179 RSGGKGGQNVNKVETAVRIVHVPTGLAVRCT 209
>gi|221633612|ref|YP_002522838.1| peptide chain release factor 2, programmed frameshift
[Thermomicrobium roseum DSM 5159]
gi|254790922|sp|B9L0E3.1|RF2_THERP RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|221155396|gb|ACM04523.1| peptide chain release factor 2, programmed frameshift
[Thermomicrobium roseum DSM 5159]
Length = 374
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW DP ++ +L +L+ +V + L +++A+ + +L + + D L + + +
Sbjct: 43 DLWQDPQRAQSLLRRLSQLRDLVQEWETL---SQQARDLLELRALASDDLELAGQVEQEA 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++++ + Q E+ LL G D A + + AG+ G+ + WAE LL MY+RWA + G+
Sbjct: 100 TELAERVRQLELRLLLTGQYDGHDAILAVHAGTGGVDAQDWAEMLLRMYLRWAQRAGFAA 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VVD + G+KSAT+E YA+GYL GE G H L+ + + + A V+V+
Sbjct: 160 EVVDLLEGEEAGIKSATVEVRGPYAYGYLKGEAGTHRLVRLSPFDAAHRRHTSFALVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E D++I +ED+ F + G+ + + A I H+PTGI V
Sbjct: 220 PL-VEEDDDVEIREEDIRIDTFRASGHGGQHVNKTESAVRITHLPTGIVV 268
>gi|258512512|ref|YP_003185946.1| hypothetical protein Aaci_2552 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479238|gb|ACV59557.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 383
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ +++ ++ VV+ ++ L ++A++ QLA+ E D+ LF A R +
Sbjct: 46 DFWDDPDRAQKIIAEMNGVKSVVDTMRRLESLLQDAEVALQLAQ-EEDDHDLFAEANRLA 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D++E+ +L G D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 105 EQLKSEMDEFELQLMLSGEYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEDHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 165 EVLDYLPGEEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E ++I E+L + S G+ + A I HIPTGI V
Sbjct: 225 PEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHIPTGIVV 274
>gi|194699680|gb|ACF83924.1| unknown [Zea mays]
Length = 174
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 5/160 (3%)
Query: 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNG 136
M++LL GP D EGA + I AG+ G + WA+ LL MYVRW +K+ Y+ RVV+K +
Sbjct: 1 MTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEA 60
Query: 137 GVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQ 194
G+KSAT+E E YA+GYLSGE G H ++ N + + A V+V+PL E S +
Sbjct: 61 GIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMAVD 120
Query: 195 ISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVR 231
I +EDL S G+ Q++ K ++ HIPTGIAVR
Sbjct: 121 IPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVR 160
>gi|218291021|ref|ZP_03495062.1| peptide chain release factor 2 [Alicyclobacillus acidocaldarius
LAA1]
gi|218239039|gb|EED06244.1| peptide chain release factor 2 [Alicyclobacillus acidocaldarius
LAA1]
Length = 342
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ +++ ++ VV+ ++ L ++A++ QLA+ E D+ LF A R +
Sbjct: 5 DFWDDPDRAQKIISEMNGVKSVVDTMRRLESLLQDAEVALQLAQEED-DHDLFAEANRLA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D++E+ +L G D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 64 EQLKSEMDEFELQVMLSGEYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEDHGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 124 EVLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E ++I E+L + S G+ + A I HIPTGI V
Sbjct: 184 PEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHIPTGIVV 233
>gi|334336533|ref|YP_004541685.1| peptide chain release factor 2 [Isoptericola variabilis 225]
gi|334106901|gb|AEG43791.1| Peptide chain release factor 2 [Isoptericola variabilis 225]
Length = 371
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP K+ V L+ + + +K LR + ++ + + ++ + E D A
Sbjct: 44 DLWDDPEKAQSVTSALSATQGELERVKKLRQRIDDVETLVEMGQ-EMDDADTLVEAETEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AAIRKDLDVLEVRTLLNGEYDAREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+VV
Sbjct: 163 SVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + ++ +F S G+ + A + HIPTGI V
Sbjct: 223 PL-IEQTDHIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 271
>gi|300868546|ref|ZP_07113164.1| peptide chain release factor 2 [Oscillatoria sp. PCC 6506]
gi|300333459|emb|CBN58356.1| peptide chain release factor 2 [Oscillatoria sp. PCC 6506]
Length = 291
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 112/193 (58%), Gaps = 7/193 (3%)
Query: 46 QLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEI 105
+L E+E D L + AY +S+ LDQ+E+ +LL GP D GA +TI AG+ G +
Sbjct: 2 ELLELET-DESLLQEAYTNLSQLSRELDQWELQQLLSGPYDAGGAVLTINAGAGGTDAQD 60
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WAE LL MY RW +++GY+ + + G+KSAT+E YA+GYL E G H L+
Sbjct: 61 WAEMLLRMYTRWGERQGYKVHLAEISEGDEAGLKSATLEIVGRYAYGYLRSEKGTHRLVR 120
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAAC 220
N + + + A V+V+P+ L+ S +L I ++DL ++ G+ Q++ K A
Sbjct: 121 ISPFNANDKRQTSFAGVEVMPI-LDRSVELDIPEKDLEVTTSRAGGKGGQNVNKVETAVR 179
Query: 221 IQHIPTGIAVRGT 233
I H+PTG+AVR T
Sbjct: 180 IVHLPTGLAVRCT 192
>gi|296129092|ref|YP_003636342.1| peptide chain release factor 2 [Cellulomonas flavigena DSM 20109]
gi|296020907|gb|ADG74143.1| peptide chain release factor 2 [Cellulomonas flavigena DSM 20109]
Length = 371
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V L+ + + + LR + ++ + + ++A E D A
Sbjct: 44 NLWDDPEAAQKVTSALSSAQSELERVDKLRGRIDDLETLVEMA-AEEDDADTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L + E+ LL G DV A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 VGIRKDLGELEIRTLLAGEYDVRDAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+V+
Sbjct: 163 SVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + ++ +F S G+ + A + HIPTGI V
Sbjct: 223 PL-IEQTDSVEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 271
>gi|425735918|ref|ZP_18854229.1| peptide chain release factor 2 [Brevibacterium casei S18]
gi|425479152|gb|EKU46332.1| peptide chain release factor 2 [Brevibacterium casei S18]
Length = 372
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP + + KL+ + L+ + ++A+L+ +++E E L + A
Sbjct: 44 SFWDDPDSAQKTSAKLSHKQGTLEKLEKFGERIDDAELLIEMSEAEGDSDSLVE----AE 99
Query: 66 LDVSKLLDQY---EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D++KL DQ E+S LL G D A VT+++G+ G WA+ L+ MY+RWA+ G
Sbjct: 100 RDIAKLKDQLSELEISTLLSGEYDERSAVVTVRSGAGGDDATDWAQMLIRMYIRWAEGRG 159
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y + +D + G+KSATI+ YA+G LS E G H L+ + + + A V
Sbjct: 160 YNVQELDTSYAEGAGIKSATIQVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 219
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+VVPL +E++ +++ + DL ++ S G+ + A I HIPTG+ V
Sbjct: 220 EVVPL-IESTDHIEVDENDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGVVV 271
>gi|148243347|ref|YP_001228504.1| peptide chain release factor 2, partial [Synechococcus sp. RCC307]
gi|147851657|emb|CAK29151.1| Protein chain release factor B [Synechococcus sp. RCC307]
Length = 349
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L D + L+ R ++A +L ++E D L + A
Sbjct: 20 DFWDDQNNARKQMRQLDDVKAQLEQLRTWRASVDDAAATLELYDLEP-DDALLEEANGGL 78
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 79 QELRLALDRWELERLLSGTYDQEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDRGMKV 138
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 139 TVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 198
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE DL+I D+DL + S G+ + + A I HIPTG+AVR T
Sbjct: 199 P-KLEEEVDLEIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 250
>gi|443311195|ref|ZP_21040827.1| peptide chain release factor 2 [Synechocystis sp. PCC 7509]
gi|442778725|gb|ELR88986.1| peptide chain release factor 2 [Synechocystis sp. PCC 7509]
Length = 361
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++ + + L +L + + E+ K + +L E+E D GL A
Sbjct: 36 FWENQEAAQKTLQELGSLKDHYSQYHQWQASLEDTKAVVELLELEN-DEGLLTEAQTNVR 94
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD +E+ +LL G D +GA +TI AG+ G + WAE LL MY RWA+++GY+
Sbjct: 95 HLHKELDGWELQQLLSGTYDEKGAVLTINAGAGGTDAQDWAEMLLRMYTRWAEEQGYKVT 154
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + G+KSATIE YA+GYL E G H L+ N + + + A V+++P
Sbjct: 155 LEEISQGDEAGLKSATIEIAGRYAYGYLRSEKGTHRLVRISPFNANDKRQTSFAGVEIMP 214
Query: 185 LFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
L ++ S L I ++DL ++ G+ Q++ K A I HIPTG+AVR T
Sbjct: 215 L-IDNSVHLDIPEKDLEITTTRAGGKGGQNVNKVETAVRIVHIPTGVAVRCT 265
>gi|308804958|ref|XP_003079791.1| putative translation releasing factor2 (ISS) [Ostreococcus tauri]
gi|116058248|emb|CAL53437.1| putative translation releasing factor2 (ISS) [Ostreococcus tauri]
Length = 419
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 9/234 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D K+ V+ +LA + ++A + +AK +LAE+ D + + A
Sbjct: 88 DLWEDANKARVVMAELAGVREELDAARAFEEHVSDAKTALELAEVGESDNEMSEMLCEAM 147
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
V L L+Q+E+ +LL G D GA V I AG+ G+ + W E L MY+ W +K G
Sbjct: 148 ASVEALDEALEQWELRRLLGGKYDALGAVVQIYAGAGGLDAQDWTEMLERMYIGWCEKRG 207
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y RV ++ + GG+K+AT+E + +A+GYLS E G H L+ N + + A V
Sbjct: 208 YGVRVTERQEGEGGGLKTATLEVDGRHAYGYLSSEKGTHRLVRQSPFNKDAARQTSFAAV 267
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
DV+PL L+ ++++ + DL S G+ + + A I+H+PTGI+V+
Sbjct: 268 DVIPL-LQDEDEVKVPEGDLEITTMRSSGAGGQNVNKLETAVRIKHVPTGISVK 320
>gi|51038077|gb|AAT93880.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 481
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 80/99 (80%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++R NLWD+P KS+E L LAD+++VV+ LKDLRYKAEEAKLI+QL+EM+ I+ LFK+
Sbjct: 90 VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ 149
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSN 99
AY+ S+D ++ LD+Y+M KLL+GP D EGA + + AGS+
Sbjct: 150 AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSD 188
>gi|282900531|ref|ZP_06308475.1| Peptide chain release factor 2 [Cylindrospermopsis raciborskii
CS-505]
gi|281194584|gb|EFA69537.1| Peptide chain release factor 2 [Cylindrospermopsis raciborskii
CS-505]
Length = 291
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +L E+EA D GL + A + + LDQ+E+ +LL GP D +GA +TI AG+ G
Sbjct: 1 MVELLELEA-DEGLLQEAETTINQMHRDLDQWELQQLLSGPYDSQGAVLTINAGAGGTDA 59
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WA L+ MY RWA+ GY+ + ++ G+KSAT+E YA+GYL E G H L
Sbjct: 60 QDWAFMLMRMYTRWAEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRAEMGTHRL 119
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PA 218
+ N + + + A V+V+P ++ S L+I ++DL ++ G+ Q++ K A
Sbjct: 120 VRISPFNANGKRQTSFAGVEVMPQ-IDNSVTLEIPEKDLEITTSRAGGKGGQNVNKVETA 178
Query: 219 ACIQHIPTGIAVRGT 233
I HIPTG+AVR T
Sbjct: 179 VRIVHIPTGVAVRCT 193
>gi|119511140|ref|ZP_01630258.1| peptide chain release factor 2 [Nodularia spumigena CCY9414]
gi|119464235|gb|EAW45154.1| peptide chain release factor 2 [Nodularia spumigena CCY9414]
Length = 288
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 6/185 (3%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G + WA L+ M
Sbjct: 6 DEALLQEAESTVTKLNRELDQWELQQLLSGPYDAEGAVLTINAGAGGTDAQDWAFMLMRM 65
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y RWA+ GY+ + ++ G+KSAT+E YA+GYL ETG H L+ N +
Sbjct: 66 YTRWAEDHGYKVSLAEESEGDEAGIKSATLEITGRYAYGYLRSETGTHRLVRISPFNANG 125
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGI 228
+ + A V+++P L+ S L+I ++DL ++ G+ Q++ K A I H+PTGI
Sbjct: 126 KRQTSFAGVEIMPQ-LDHSVQLEIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGI 184
Query: 229 AVRGT 233
AVR T
Sbjct: 185 AVRCT 189
>gi|282898121|ref|ZP_06306116.1| Peptide chain release factor 2 [Raphidiopsis brookii D9]
gi|281197265|gb|EFA72166.1| Peptide chain release factor 2 [Raphidiopsis brookii D9]
Length = 290
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 111/193 (57%), Gaps = 7/193 (3%)
Query: 46 QLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEI 105
+L E+EA D GL + A + + LDQ+E+ +LL GP D +GA +TI AG+ G +
Sbjct: 2 ELLELEA-DEGLLQEAETTINQMHRDLDQWELQQLLSGPYDSQGAVLTINAGAGGTDAQD 60
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WA L+ MY RWA+ GY+ + ++ G+KSAT+E YA+GYL E G H L+
Sbjct: 61 WAFMLMRMYTRWAEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRAEMGTHRLVR 120
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAAC 220
N + + + A V+V+P ++ S L+I ++DL ++ G+ Q++ K A
Sbjct: 121 ISPFNANGKRQTSFAGVEVMPQ-IDNSVTLEIPEKDLEVTTSRAGGKGGQNVNKVETAVR 179
Query: 221 IQHIPTGIAVRGT 233
I HIPTGIAVR T
Sbjct: 180 IVHIPTGIAVRCT 192
>gi|87123562|ref|ZP_01079413.1| Peptide chain release factor 2 [Synechococcus sp. RS9917]
gi|86169282|gb|EAQ70538.1| Peptide chain release factor 2 [Synechococcus sp. RS9917]
Length = 356
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L+ R ++A+ +L ++E D + A
Sbjct: 26 DFWDDQPNAQKQMRRLDEVKAQLQQLEQWRGAIDDAQATLELYDLEP-DDDMLSEAQEGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 TTLRHALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE + YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 SVDELSEGEEAGIKSATIEIDGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE D+ I D+DL + S G+ + + A I HIPTG+AVR T
Sbjct: 205 P-KLEDEVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 256
>gi|227486869|ref|ZP_03917185.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541969|ref|ZP_03972018.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092943|gb|EEI28255.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182412|gb|EEI63384.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 366
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDPT + +V L+ + + ++ LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDDPTNAQKVTSDLSHTQSTLKKVRALRQRVDDLPVMYELAEEEGEGTEL---ADDER 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + ++ E+ +L G D A VTI++G+ G+ WAE L+ MY+RWA+KEG++
Sbjct: 100 ADLRQAIESMEVQTMLSGEYDERDAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKEGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V D + G+KSAT + Y +G LS E G H L+ + + + A V+V+
Sbjct: 160 QVFDTSYAEEAGIKSATFQVSDPYMYGTLSVEQGTHRLVRISPFDNQARRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D D+ ++ S G+ + A I HIPTGI V
Sbjct: 220 PV-VEKTDHIDIPDSDVRVDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 268
>gi|163840102|ref|YP_001624507.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC
33209]
gi|229470354|sp|A9WPT6.1|RF2_RENSM RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|162953578|gb|ABY23093.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC
33209]
Length = 374
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ +V KL+ + + L+ L + ++ +++ +LAE E D A +
Sbjct: 47 DLWDNPAEAQKVTSKLSHAQSKLERLETLTARIDDLEVLVELAESEH-DEDSLAEASKEL 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 106 VSLQKSLQELEVVTLLAGEYDEREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYPT 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 166 SVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D D+ +F S G+ + A + H+PTG V
Sbjct: 226 PL-IEQTDSIEIPDNDIRVDVFRSSGPGGQSVNTTDSAVRLTHLPTGTVV 274
>gi|46575986|gb|AAT01347.1| unknown protein [Oryza sativa Japonica Group]
Length = 499
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 80/99 (80%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++R NLWD+P KS+E L LAD+++VV+ LKDLRYKAEEAKLI+QL+EM+ I+ LFK+
Sbjct: 90 VLRGRNLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQ 149
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSN 99
AY+ S+D ++ LD+Y+M KLL+GP D EGA + + AGS+
Sbjct: 150 AYKTSVDATEFLDRYQMYKLLKGPYDKEGACIIVTAGSD 188
>gi|220910508|ref|YP_002485819.1| peptide chain release factor 2 [Cyanothece sp. PCC 7425]
gi|219867119|gb|ACL47458.1| peptide chain release factor 2 [Cyanothece sp. PCC 7425]
Length = 361
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD + L +L + + L + +A +L E+E D L + A
Sbjct: 35 NFWDDQATAQVTLQELNELKSHLEQLHRWQATLSDAVAALELVELEP-DESLLQEASDNL 93
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L Q+E+ +LL G D GA +TI AG+ G + WAE LL MY RWA++ GY+
Sbjct: 94 KQLDQQLSQWELEQLLSGTYDRNGAVLTINAGAGGTDAQDWAEMLLRMYTRWAEQHGYKV 153
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E + YA+GYL E G H L+ N + + + A V+V+
Sbjct: 154 HLAELSEGDEAGIKSATLEIDGRYAYGYLRSEKGTHRLVRISPFNANGKRQTSFAGVEVM 213
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
P L+ S L+I D+DL ++ G+ Q++ K A I H+PTG+AVR T
Sbjct: 214 PQ-LDHSVQLEIPDKDLEITTSRSGGKGGQNVNKVETAVRIVHLPTGLAVRCT 265
>gi|254432093|ref|ZP_05045796.1| peptide chain release factor 2 [Cyanobium sp. PCC 7001]
gi|197626546|gb|EDY39105.1| peptide chain release factor 2 [Cyanobium sp. PCC 7001]
Length = 358
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L D + L+ + +A+ +L E+E D L + A
Sbjct: 26 DFWDDQQAAQKQMRQLDDVKAQLEQLERWKAAVSDAEATLELHELEP-DGDLLEEANAGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D EGA +TI AG+ G + WA+ LL MY RWA+ G
Sbjct: 85 TSLRGDLDRWELERLLSGPYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMTV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 SVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P +E L I D+DL + S G+ + + A I HIPTG+ VR T
Sbjct: 205 P-KIEEEVKLDIPDKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCT 256
>gi|33239657|ref|NP_874599.1| peptide chain release factor 2 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237182|gb|AAP99251.1| Protein chain release factor B [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 356
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K+ + + +L + + L + E+AK+ +L E+E D + + A
Sbjct: 26 DFWNDQQKARKQMRQLDEVKDQLTKLANWNAAIEDAKVSLELYELEP-DNEMIEEAQIGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD +E+ +LL GP D EGA + I AG+ G + WA+ LL MY+RWA+ G +
Sbjct: 85 CQLKTELDLWELERLLSGPYDKEGAVLAINAGAGGTDAQDWAQMLLRMYMRWAESHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KSATIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 145 ILSELSEGEEAGIKSATIEIEGRYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGIEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE L+I ++DL + S G+ + + A I HIPTG+AVR T
Sbjct: 205 PQ-LEEDVHLEIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 256
>gi|88809865|ref|ZP_01125371.1| peptide chain release factor 2 [Synechococcus sp. WH 7805]
gi|88786249|gb|EAR17410.1| peptide chain release factor 2 [Synechococcus sp. WH 7805]
Length = 356
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L+ + +A+ +L ++E D + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAMLQQLETWQGAVSDAQATLELYDLEP-DEDMLGEAQGGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 NQLRRDLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDRGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE D+ I D+DL + S G+ + + A I HIPTG+AVR T
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 256
>gi|384249824|gb|EIE23305.1| peptide chain release factor 2 [Coccomyxa subellipsoidea C-169]
Length = 368
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 12/235 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + L ++++ +V ++ + + + +LAEMEA + L A
Sbjct: 38 FWEDQESAQATLQQMSELKGIVQEVEGFQGLLGDVQTAIELAEMEAGPFCL--EGVEALE 95
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K L ++E+ +LL G D A+++I+AG+ G WAE+L MY RWA+K+GY+ R
Sbjct: 96 RLQKGLARWELQRLLGGEYDKGSATLSIQAGAGGTDAMDWAEKLERMYTRWAEKQGYKTR 155
Query: 127 VVDKCCC-----KNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
+ C + GVKS +E YA+GYL+GE G H L+ N + + A
Sbjct: 156 SLSFLLCNVQSGEEAGVKSVEMEVHGRYAYGYLAGEKGTHRLVRQSPFNAKAARQTSFAA 215
Query: 180 VDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAAC--IQHIPTGIAVR 231
V+V+P+ E + ++I + DL ++ G Q++ K C I+HIPTGIAVR
Sbjct: 216 VEVMPILGEKATQVEIPESDLEITTTRSQGAGGQNVNKLETCVRIKHIPTGIAVR 270
>gi|148240661|ref|YP_001226048.1| peptide chain release factor 2 [Synechococcus sp. WH 7803]
gi|147849200|emb|CAK24751.1| Protein chain release factor B [Synechococcus sp. WH 7803]
Length = 356
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L + +A+ +L ++E D + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAMLQQLDTWQGAVSDAQATLELYDLEP-DDDMLGEAQSGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 TQLRRDLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDRGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSATIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE D+ I D+DL + S G+ + + A I H+PTG+AVR T
Sbjct: 205 P-KLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCT 256
>gi|170782441|ref|YP_001710774.1| chain release factor 2 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157010|emb|CAQ02182.1| chain release factor 2 [Clavibacter michiganensis subsp.
sepedonicus]
Length = 367
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V L+ + + +L+ + ++ + L EM D + A
Sbjct: 44 DLWDDTEKAQKVTSDLSHRQSELKRIDELQRRLDDLDV---LVEMAKDDEESAEEAVVEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K++D+ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ Y
Sbjct: 101 AGITKIMDELEVQTLLNGEFDPRPAVVTIRAGAGGVDAADFAEMLMRMYLRWAEQHDYSA 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ N + + + A V+VV
Sbjct: 161 TVLDTSYAEEAGIKSATFEIDAPYAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + D+ +F S G+ + A I H+PTGI V
Sbjct: 221 PL-IEQTESIEIPENDMRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 269
>gi|384136540|ref|YP_005519254.1| hypothetical protein TC41_2844 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290625|gb|AEJ44735.1| hypothetical protein TC41_2844 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 342
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+P ++ +++ ++ VV+ +K L ++A++ QLA+ E D LF A R +
Sbjct: 5 DFWDNPDRAQKIIAEMNGVKSVVDTMKRLESLHQDAEVALQLAQ-EEDDPDLFAEANRLA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D++E+ +L G D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 64 EQLKSEMDEFELQLMLSGEYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEDHGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 124 EVLDYLPGEEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E ++I E+L + S G+ + A I HIPTGI V
Sbjct: 184 PEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHIPTGIVV 233
>gi|403527852|ref|YP_006662739.1| peptide chain release factor 2 [Arthrobacter sp. Rue61a]
gi|403230279|gb|AFR29701.1| peptide chain release factor 2 [Arthrobacter sp. Rue61a]
Length = 374
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + +L+ V L L + ++ +++ +L + E + + + A S
Sbjct: 46 DLWDDPASAQVITSRLSHRQSEVERLSKLASRIDDLEVLVELGQDEGDEDSMAEAAKELS 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E++ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 106 -SIRKALAELEITTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 165 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D ++ +F S G+ + A + HIPTGI V
Sbjct: 225 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|229821252|ref|YP_002882778.1| peptide chain release factor 2 [Beutenbergia cavernae DSM 12333]
gi|259585260|sp|C5BYB6.1|RF2_BEUC1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|229567165|gb|ACQ81016.1| peptide chain release factor 2 [Beutenbergia cavernae DSM 12333]
Length = 374
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + ++ + + QLA E D A
Sbjct: 43 DLWDDPDAAQKVTSRLSHTQSELERLDTLRSRIDDLETLVQLA-AEEDDADTLAEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+++GY
Sbjct: 102 TKIRTSMGELEVRTLLAGEYDSREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERKGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 162 QVLDTSYAEEAGLKSATFEVKVPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I + D+ +F S G+ + A I H+PTGI V
Sbjct: 222 PL-IEQTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>gi|119960719|ref|YP_948373.1| peptide chain release factor 2 [Arthrobacter aurescens TC1]
gi|119947578|gb|ABM06489.1| peptide chain release factor 2 [Arthrobacter aurescens TC1]
Length = 398
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + +L+ V L L + ++ +++ +L + E + + + A S
Sbjct: 70 DLWDDPASAQVITSRLSHRQSEVERLSKLASRIDDLEVLVELGQDEGDEDSMAEAAKELS 129
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E++ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 130 -SIRKALAELEITTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 188
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 189 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 248
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D ++ +F S G+ + A + HIPTGI V
Sbjct: 249 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVV 297
>gi|452911608|ref|ZP_21960275.1| Peptide chain release factor 2 [Kocuria palustris PEL]
gi|452833245|gb|EME36059.1| Peptide chain release factor 2 [Kocuria palustris PEL]
Length = 373
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + ++ +L+ + L L + E+ +++ QLAE E D A
Sbjct: 44 DLWDDVENAQKLTSQLSHKQSQLKRLDALGERIEDIEVMVQLAEEED-DADTLALAEEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K L Q E++ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 VSVRKDLAQLEITTLLSGEYDERDAVVTIRAGAGGVDAADFAEILMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 KVLDTSYAEEAGLKSATFEVKTPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 223 PL-IESDDTIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 271
>gi|269955834|ref|YP_003325623.1| peptide chain release factor 2 [Xylanimonas cellulosilytica DSM
15894]
gi|269304515|gb|ACZ30065.1| peptide chain release factor 2 [Xylanimonas cellulosilytica DSM
15894]
Length = 370
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ L+ + +N +K L + ++ + + +L + E D A
Sbjct: 44 DLWDDPEAAQKITSALSATQAELNRVKSLGRRIDDVETLVELGQ-EMGDEDSLTEAEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K LD E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 103 VGIRKDLDALEVRTLLSGEYDARDAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGFPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YAFG LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGLKSATFEVNAPYAFGNLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + ++ +F S G+ + A + HIPTGI V
Sbjct: 223 PL-IEQTDSVEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 271
>gi|27262208|gb|AAN87385.1| bacterial peptide chain release factor 2 [Heliobacillus mobilis]
gi|111074980|gb|ABH04839.1| bacterial peptide chain release factor 2 [Heliobacillus mobilis]
Length = 341
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + W+D ++ + + +L V + DL K E+ ++ +L E D + +
Sbjct: 14 MITDPTFWEDQEQAQKTMQELTGLKDKVKSFFDLYQKWEDLGVLRELGAEEE-DPDILQE 72
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LD++ + LL GP D A VT+ AG+ G W E L+ MY+RW +K
Sbjct: 73 IEEGIQTIQSELDRWHLQLLLNGPYDRNNALVTLHAGAGGTEAMDWNEMLMRMYIRWGEK 132
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+GY+ ++D G+KSAT+ F E A+GYL GE G H L+ + S + A
Sbjct: 133 KGYKVDILDSLAGDEAGMKSATLSFSGENAYGYLKGEMGVHRLVRISPFDASGRRHTSFA 192
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P + D+QI+ EDL F + G+ + + A I HIPTGI V
Sbjct: 193 SVEVLPE-VSDDIDIQINSEDLKVDTFRASGAGGQHVNKTESAVRITHIPTGIVV 246
>gi|403717145|ref|ZP_10942509.1| peptide chain release factor 2 [Kineosphaera limosa NBRC 100340]
gi|403209327|dbj|GAB97192.1| peptide chain release factor 2 [Kineosphaera limosa NBRC 100340]
Length = 369
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V LA + ++ + + + E+ +++ ++ E D A R
Sbjct: 43 DLWDDQERAQQVTSNLARANAELDRITGMDARVEDLEVLVEMG-TEENDADTLAEAEREL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K + + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 TSLRKAVGELEVRTLLAGEYDPREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
RV+D + G+KSAT E YA+G+L+ E G H L+ + + + A V+VV
Sbjct: 162 RVMDTSYAEEAGLKSATFEVNVPYAYGHLAVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D +L +F S G+ + A + HIPTGI V
Sbjct: 222 PL-IEQTDHIEIPDNELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 270
>gi|37520802|ref|NP_924179.1| peptide chain release factor 2 [Gloeobacter violaceus PCC 7421]
gi|35211797|dbj|BAC89174.1| peptide chain release factor [Gloeobacter violaceus PCC 7421]
Length = 354
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + L L + + + R +A+++ +L + E D L A
Sbjct: 31 DFWDDQAAAQKALQNLNNLKQPLEQFGRWRNLLSDAEVVLELVQ-ETGDESLLPEAEGNI 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D GA ++I AG+ G + WAE LL MY RWA+++GY+
Sbjct: 90 EALVGELDRWELEQLLSGPYDERGAILSINAGAGGTDAQDWAEMLLRMYTRWAERQGYQA 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + GVKSAT+E + YA+GYLS E G H L+ N + + + A V+V+
Sbjct: 150 HLLELSEGEEAGVKSATLEIDGRYAYGYLSAEKGTHRLVRISPFNANDKRQTSFAGVEVM 209
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P+ L+ S + I +D+ F S G+ + + + H PTGI+VR T
Sbjct: 210 PV-LDDSVQVDIRPDDIEIDTFRSGGKGGQNVNKVETGVRVTHKPTGISVRCT 261
>gi|423349181|ref|ZP_17326837.1| peptide chain release factor 2 [Scardovia wiggsiae F0424]
gi|393703410|gb|EJD65611.1| peptide chain release factor 2 [Scardovia wiggsiae F0424]
Length = 373
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + V +LA + + L+D+ + ++ +++ L E D A
Sbjct: 45 LWDDQDNAQRVTSQLAQAQNELKQLEDIGSRLDDIEVLYSLGSEEE-DADSRDEAREELK 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
VS+ L E+ LL G D A VTI++G+ G+ WA+ L+ MYVRWA++ GYR +
Sbjct: 104 AVSRELSDVEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYVRWAERHGYRLQ 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G LS E G H L+ F N S + + A V+V+
Sbjct: 164 VMDTSYAEEAGIKSATFEIDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 223 PL-VEPTDHIDIPDSDIRVDTYMSHGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|320161067|ref|YP_004174291.1| peptide chain release factor 2 [Anaerolinea thermophila UNI-1]
gi|319994920|dbj|BAJ63691.1| peptide chain release factor 2 [Anaerolinea thermophila UNI-1]
Length = 351
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 10/232 (4%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N +WDDPT + ++ ++AD + + + ++ +LAE E D L + +
Sbjct: 25 NPGIWDDPTSAQRLMKRIADLREEIEGWNQFLKRCQDG---LELAESE--DESLREDLEK 79
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ K L Q E++ LL GP D E A +TI AG+ G + WA L+ MY+RW ++ G+
Sbjct: 80 EISALEKELQQRELTTLLSGPYDHENALLTINAGAGGTDSQDWASMLMRMYLRWCERRGF 139
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D + G+KS TI YA+GYL GE G H L+ + + + A V+
Sbjct: 140 DSEILDFSEGEEAGIKSVTIAVTGPYAYGYLRGEKGVHRLVRLSPFDAAHRRHTSFAQVE 199
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P ++QI+ +DL ++ S S G+ A I HIPTGI V
Sbjct: 200 VLPEISNGDNEIQINPDDLRIDIYRSSSAGGQNVQKNATAVRITHIPTGIVV 251
>gi|186681801|ref|YP_001864997.1| peptide chain release factor 2 [Nostoc punctiforme PCC 73102]
gi|186464253|gb|ACC80054.1| peptide chain release factor 2 [Nostoc punctiforme PCC 73102]
Length = 289
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 6/185 (3%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L + A +++ LDQ+E+ +LL GP D EGA +TI AG+ G + WA L+ M
Sbjct: 7 DEALLQEAESTITKLNRDLDQWELQQLLSGPYDAEGAVLTISAGAGGTDAQDWAFMLMRM 66
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y RW + GY+ + ++ G+KSAT+E YA+GYL E G H L+ N +
Sbjct: 67 YTRWGEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRSEMGTHRLVRISPFNANG 126
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGI 228
+ + A V+V+P ++ S L+I D+DL ++ G+ Q++ K A I HIPTG+
Sbjct: 127 KRQTSFAGVEVMPQ-IDNSVQLEIPDKDLEITTTRSGGKGGQNVNKVETAVRIVHIPTGL 185
Query: 229 AVRGT 233
AVR T
Sbjct: 186 AVRCT 190
>gi|148272488|ref|YP_001222049.1| peptide chain release factor RF-2 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830418|emb|CAN01353.1| peptide chain release factor RF-2 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 367
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V L+ + + +L+ + ++ + L EM D + A
Sbjct: 44 DLWDDTEKAQKVTSDLSHRQSELKRIDELQRRLDDLDV---LVEMAKDDEESAEEAVVEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K++D+ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ Y
Sbjct: 101 AGITKIMDELEVQTLLNGEFDPRPAVVTIRAGAGGVDAADFAEMLMRMYLRWAEQHDYSA 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ N + + + A V+VV
Sbjct: 161 TVLDTSYAEEAGIKSATFEIDAPYAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + ++ +F S G+ + A I H+PTGI V
Sbjct: 221 PL-IEQTESIEIPENEMRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 269
>gi|352095544|ref|ZP_08956558.1| Peptide chain release factor 2 [Synechococcus sp. WH 8016]
gi|351678686|gb|EHA61831.1| Peptide chain release factor 2 [Synechococcus sp. WH 8016]
Length = 356
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++ + +L E+E D L A +
Sbjct: 26 DFWNDQQNAQKQMRRLDEVKAQLQQLVDWRGAIDDGQATLELYELEP-DEDLLGEAQQGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ +G
Sbjct: 85 NRLRQALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDQGMSV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVNELSEGEEAGIKSTTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P L+ DL I ++DL + S G+ + + A I H+PTG+AVR T
Sbjct: 205 P-KLDEEVDLDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCT 256
>gi|145593537|ref|YP_001157834.1| peptide chain release factor 2 [Salinispora tropica CNB-440]
gi|189040004|sp|A4X3K6.1|RF2_SALTO RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|145302874|gb|ABP53456.1| bacterial peptide chain release factor 2 (bRF-2) [Salinispora
tropica CNB-440]
Length = 373
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ +N L +LR + ++AK++ +LAE E+ D G
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEINKLAELRSRLDDAKVLLELAEAES-DPGALTEVEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AGLAKAIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ F S G+ + A I HIPTGI V
Sbjct: 223 PV-VEQTDHIDIPENEMRFDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 271
>gi|33866841|ref|NP_898400.1| peptide chain release factor 2 [Synechococcus sp. WH 8102]
gi|81573750|sp|Q7U3W6.1|RF2_SYNPX RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|33639442|emb|CAE08826.1| peptide chain release factor RF-2 [Synechococcus sp. WH 8102]
Length = 374
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L D ++AK +L E+E D + A
Sbjct: 44 DFWDDQQAAQKQMRRLDEVKAQLQQLADWGGAVDDAKATLELYELEP-DEEMLTEAQEGL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA +TI AG+ G + WA+ LL MY RWA+ G +
Sbjct: 103 NQLRQGLDRWELERLLSGDYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 163 TVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P ++ D+ I ++DL + S G+ + + A I HIPTG+AVR T
Sbjct: 223 P-KIDEEVDIDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 274
>gi|295395219|ref|ZP_06805427.1| peptide chain release factor RF2 [Brevibacterium mcbrellneri ATCC
49030]
gi|294971981|gb|EFG47848.1| peptide chain release factor RF2 [Brevibacterium mcbrellneri ATCC
49030]
Length = 376
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + KL+ + L+ + E+ +L+ + E E + L + A+
Sbjct: 43 DLWDDPDVAQAITSKLSHKQGTLEKLQKFDQRIEDVELLVSMGEDEGDEDALNE----AA 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+V KL L E+S LL G D A +T++AG+ G WA+ L MY+RWA+ G
Sbjct: 99 AEVEKLKSELAALEISTLLSGEFDERSAVITVRAGAGGDDATDWAQMLTRMYIRWAENRG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +D + GVKSAT++ YA+G LS E G H L+ + + + A V
Sbjct: 159 YKVEELDTSYAEGAGVKSATVQVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+VVPL +E + + I + DL +F S G+ + A I H+PTG+ V
Sbjct: 219 EVVPL-IEQTDHIDIDENDLRIDVFRSSGPGGQSVNTTDSAVRITHVPTGVVV 270
>gi|184200580|ref|YP_001854787.1| peptide chain release factor 2 [Kocuria rhizophila DC2201]
gi|183580810|dbj|BAG29281.1| peptide chain release factor 2 [Kocuria rhizophila DC2201]
Length = 372
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ +V +L+ V+ L+ + + ++ +++ +LAE E D + A
Sbjct: 44 DLWDNPDEAQKVTSQLSHKQSKVDRLRKIESRIDDLEVMVELAEDE--DDQETRDASATE 101
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + K L + E+ LL G D A VTI++G+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 LTSIQKALSELEIQTLLAGEYDEREAVVTIRSGAGGVDAADFAEILMRMYLRWAERHGYP 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V
Sbjct: 162 TKVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +E+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 222 IPL-IESDDTVEIPETELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 271
>gi|113953765|ref|YP_731847.1| peptide chain release factor 2 [Synechococcus sp. CC9311]
gi|113881116|gb|ABI46074.1| peptide chain release factor 2, programmed frameshift
[Synechococcus sp. CC9311]
Length = 375
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + L D R ++ + +L E+E D L A +
Sbjct: 45 DFWNDQQNAQKQMRRLDEVKAQLQQLVDWRGAIDDGQATLELHELEP-DEDLLGEAQQGL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ +G
Sbjct: 104 NQLRQALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDQGMSV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 164 SVNELSEGEEAGIKSTTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 223
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P L+ +L I ++DL + S G+ + + A I H+PTG+AVR T
Sbjct: 224 P-KLDEEVELDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCT 275
>gi|385142948|emb|CCH23987.1| peptide chain release factor 2 [Corynebacterium glutamicum K051]
Length = 368
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDTREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + I D D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|19552028|ref|NP_600030.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
13032]
gi|62389691|ref|YP_225093.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
13032]
gi|145294961|ref|YP_001137782.1| peptide chain release factor 2 [Corynebacterium glutamicum R]
gi|418246625|ref|ZP_12873019.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
14067]
gi|24638152|sp|Q8NS78.1|RF2_CORGL RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|166223627|sp|A4QCD3.1|RF2_CORGB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|21323567|dbj|BAB98194.1| Protein chain release factor B [Corynebacterium glutamicum ATCC
13032]
gi|41325026|emb|CAF19507.1| PEPTIDE CHAIN RELEASE FACTOR 2 [Corynebacterium glutamicum ATCC
13032]
gi|140844881|dbj|BAF53880.1| hypothetical protein [Corynebacterium glutamicum R]
gi|354509240|gb|EHE82175.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC
14067]
Length = 368
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + I D D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|417971945|ref|ZP_12612861.1| peptide chain release factor 2 [Corynebacterium glutamicum S9114]
gi|344043699|gb|EGV39387.1| peptide chain release factor 2 [Corynebacterium glutamicum S9114]
Length = 368
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + I D D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|260904322|ref|ZP_05912644.1| peptide chain release factor 2 [Brevibacterium linens BL2]
Length = 372
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP + ++ L+ + L+ + ++A+LI +++E D G A
Sbjct: 43 SFWDDPDSAQKISATLSHKQGTLEKLEKFGERIDDAELIIEMSE----DEGDEDSKVEAE 98
Query: 66 LDVSKLLDQY---EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL DQ E+S LL D A VT+++G+ G WA+ L+ MYVRWA+ G
Sbjct: 99 RDLKKLHDQLAELEISTLLNHEYDERSAVVTVRSGAGGDDATDWAQMLIRMYVRWAENRG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y + +D + G+KSATI+ YA+G LS E G H L+ + + + A V
Sbjct: 159 YNVQQLDTSYAEGAGIKSATIQVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+VVPL +E++ ++I + DL ++ S G+ + A I H PTG+ V
Sbjct: 219 EVVPL-IESTDHVEIDENDLRIDVYRSSGPGGQSVNTTDSAVRITHAPTGVVV 270
>gi|219670742|ref|YP_002461177.1| hypothetical protein Dhaf_4746 [Desulfitobacterium hafniense DCB-2]
gi|219541002|gb|ACL22741.1| hypothetical protein Dhaf_4746 [Desulfitobacterium hafniense DCB-2]
Length = 368
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 6/234 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+P + +V+ +L+ + V L+ + ++ + Q+A +E D L
Sbjct: 43 DFWDNPEGAQKVMQELSYQQEKVKTYYTLQQQLDDMLTLYQMA-VEEKDESLEPELEEGI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + LD E+ LL GP D A VT+ AG+ G + W L MY+R+ ++ GY+
Sbjct: 102 LALQQRLDGLELEILLSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ F E AFGYL E G H L+ + S + A VDV+
Sbjct: 162 ETMDFLPGDEAGIKSATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P +E + ++QI EDL + + G+ + A I H+PTGI V+ +
Sbjct: 222 PEVMEDNAEIQIPPEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQS 275
>gi|289706413|ref|ZP_06502771.1| peptide chain release factor 2 [Micrococcus luteus SK58]
gi|289556908|gb|EFD50241.1| peptide chain release factor 2 [Micrococcus luteus SK58]
Length = 373
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ +V KL+ + + L + E+ + + +LA E + L + A +
Sbjct: 44 DLWDDPEEAQKVTSKLSHRQTDLKRITSLESRIEDLETMVELA-AEEDEPSLLEDANQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L++ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 103 TSIRKALEELEVVTLLSGEYDQRDAVVTIRAGAGGVDAADFAETLMRMYLRWAEQRGWST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +AFG LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVNAPFAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E+ ++I + ++ +F S G+ + A + H+PTGI V
Sbjct: 223 PL-IESDDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVV 271
>gi|403746666|ref|ZP_10955059.1| hypothetical protein URH17368_2375 [Alicyclobacillus hesperidum
URH17-3-68]
gi|403120525|gb|EJY54897.1| hypothetical protein URH17368_2375 [Alicyclobacillus hesperidum
URH17-3-68]
Length = 340
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD K+ +++ ++ VV+ + +L +A++ QLA+ E D LF A +
Sbjct: 5 NFWDDQEKAQKIIGEMNALKSVVDKMNELTSLHADAEVALQLAQEEN-DMDLFAEANEMA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D +E+ +L G D A V + G+ G + WA LL MY RWA+ GY+
Sbjct: 64 TKLKDGIDSFELQLMLSGDYDANNAIVELHPGAGGTESQDWASILLRMYTRWAEDHGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 124 EVLDYLPGDEAGIKSVTLRIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E ++I E+L + S G+ + A I H+PTGI V
Sbjct: 184 PEIAEDDTSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHLPTGIVV 233
>gi|434389323|ref|YP_007099934.1| peptide chain release factor 2 [Chamaesiphon minutus PCC 6605]
gi|428020313|gb|AFY96407.1| peptide chain release factor 2 [Chamaesiphon minutus PCC 6605]
Length = 371
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 6/185 (3%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L++ A + +S LD++E+ +LL G D +GA +TI AG+ G + WAE LL M
Sbjct: 92 DEALYQEAKQNLSQMSLELDRWELEQLLSGTYDAKGAILTINAGAGGTDAQDWAEMLLRM 151
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y RWA+ Y+ ++ + + G+KSAT+E E +YA+GYL E G H L+ N +
Sbjct: 152 YTRWAEDRKYKVQLAEISEGEEAGLKSATLEIEGKYAYGYLRSEKGTHRLVRISPFNAND 211
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGI 228
+ + A V+V+PL ++ S L I D DL ++ G+ Q++ K A I H PTG+
Sbjct: 212 KRQTSFAGVEVMPL-IDNSVQLDIPDTDLEITTTRAGGKGGQNVNKVETAVRIVHKPTGV 270
Query: 229 AVRGT 233
AVR T
Sbjct: 271 AVRCT 275
>gi|119025481|ref|YP_909326.1| peptide chain release factor 2 [Bifidobacterium adolescentis ATCC
15703]
gi|154486912|ref|ZP_02028319.1| hypothetical protein BIFADO_00745 [Bifidobacterium adolescentis
L2-32]
gi|118765065|dbj|BAF39244.1| peptide chain release factor 2 [Bifidobacterium adolescentis ATCC
15703]
gi|154084775|gb|EDN83820.1| peptide chain release factor 2 [Bifidobacterium adolescentis L2-32]
Length = 376
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V KL+ + L + E+ + + +L + E D A
Sbjct: 45 LWDDPENAQKVTSKLSAVQSQLKRLASADQRIEDVETLVELGQEEE-DADTLAEAKAEVE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 SIQKDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L T PD +I + S P G+ + A I HIPTGI V
Sbjct: 224 LVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVV 271
>gi|227494927|ref|ZP_03925243.1| peptide chain release factor RF2 [Actinomyces coleocanis DSM 15436]
gi|226831379|gb|EEH63762.1| peptide chain release factor RF2 [Actinomyces coleocanis DSM 15436]
Length = 372
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + V +L+ + + ++ + + ++ + I ++AE + + L A
Sbjct: 43 DLWDNPEAAQAVTSELSHTQAELGRIEKMVERIDDLETIVEMAEEDLDEKDLLLEEAEAD 102
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + + L E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LAGIRQALADLEIKTLLSGEYDERSAVVTIRAGAGGVDAADFAEMLLRMYLRWAERNGYP 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 223 IPL-IETTDHIEIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|336321416|ref|YP_004601384.1| peptide chain release factor 2 [[Cellvibrio] gilvus ATCC 13127]
gi|336104997|gb|AEI12816.1| peptide chain release factor 2 [[Cellvibrio] gilvus ATCC 13127]
Length = 370
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V L+ + ++ + L + ++ + + +L + E D A
Sbjct: 44 NLWDDPESAQKVTSALSSAQAELDRVDKLGARIDDLETLVELGQ-EMGDEDTLVEAEADL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AAIRKDLGELEVRTLLAGEYDEREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+V+
Sbjct: 163 TVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 223 PL-IEQTDSIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 271
>gi|159036572|ref|YP_001535825.1| peptide chain release factor 2 [Salinispora arenicola CNS-205]
gi|189040003|sp|A8M3R1.1|RF2_SALAI RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|157915407|gb|ABV96834.1| peptide chain release factor 2 [Salinispora arenicola CNS-205]
Length = 373
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ + L DLR + ++ +++ +LAE E+ D G+
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEITKLTDLRSRLDDTQVLLELAEAES-DPGVLTEVAAEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLAKSIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ ++ S G+ + A I HIPTGI V
Sbjct: 223 PV-VEQTDHIDIPENEMRTDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 271
>gi|239917286|ref|YP_002956844.1| peptide chain release factor 2 [Micrococcus luteus NCTC 2665]
gi|239838493|gb|ACS30290.1| bacterial peptide chain release factor 2 (bRF-2) [Micrococcus
luteus NCTC 2665]
Length = 373
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ +V KL+ + + L + E+ + + +LA E + L A +
Sbjct: 44 DLWDDPEEAQKVTSKLSHRQTDLKRITSLESRIEDLETMVELA-AEEDEPSLLDDANQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L++ E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 103 TSIRKALEELEVVTLLSGEYDQRDAVVTIRAGAGGVDAADFAETLMRMYLRWAEQRGWST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +AFG LS E G H L+ + + + A V+VV
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVNAPFAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E+ ++I + ++ +F S G+ + A + H+PTGI V
Sbjct: 223 PL-IESDDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVV 271
>gi|317124427|ref|YP_004098539.1| peptide chain release factor 2 (bRF-2) [Intrasporangium calvum DSM
43043]
gi|315588515|gb|ADU47812.1| bacterial peptide chain release factor 2 (bRF-2) [Intrasporangium
calvum DSM 43043]
Length = 370
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEM--EAIDYGLFKRA 61
NLWDD K+ +V +L NA +D R + ++++ + L EM E D A
Sbjct: 43 NLWDDQDKAQQV----TSALSRANAERD-RVLSMDSRINDLETLVEMATEESDQDTMDEA 97
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R + K L + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++
Sbjct: 98 LRDLAKIKKDLGELEVRTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERH 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY +V+D + G+KSAT E YAFG+L+ E G H L+ + + + A
Sbjct: 158 GYPTKVMDTSYAEEAGLKSATFEVNVPYAFGHLNVEGGTHRLVRISPFDNQGRRQTSFAA 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+PL +E+ ++I + +L +F S G+ + A + H+PTGI V
Sbjct: 218 VEVIPL-IESDDSIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVV 270
>gi|78213950|ref|YP_382729.1| peptide chain release factor 2 [Synechococcus sp. CC9605]
gi|78198409|gb|ABB36174.1| peptide chain release factor 2 [Synechococcus sp. CC9605]
Length = 356
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L R ++A+ +L E+E D L + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAQLSQLGGWRGAVDDAQATLELYELEP-DEDLLQEAQNGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 NQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P +E L I ++DL + S G+ + + A I HIPTG+ VR T
Sbjct: 205 P-KIEEEVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCT 256
>gi|257069176|ref|YP_003155431.1| peptide chain release factor 2 [Brachybacterium faecium DSM 4810]
gi|256559994|gb|ACU85841.1| bacterial peptide chain release factor 2 (bRF-2) [Brachybacterium
faecium DSM 4810]
Length = 371
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V L+ + + +L + E+ +++ QLA E D + A
Sbjct: 44 DLWDDVDNAQKVSSALSHAQSERRRISELDSRIEDLEVMVQLA-AEEDDADTLEEAENEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K LD+ E+ LL G D A +TI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 VSIHKTLDELEVRTLLSGEYDERDAVITIRAGAGGVDAADFAEMLMRMYLRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSHAEEAGLKSVTFEVSAPFAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E++ ++I + DL +F S G+ + A + H+PTG V
Sbjct: 223 PL-IESTDSIEIPENDLKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGTVV 271
>gi|319789223|ref|YP_004150856.1| hypothetical protein Theam_0242 [Thermovibrio ammonificans HB-1]
gi|317113725|gb|ADU96215.1| hypothetical protein Theam_0242 [Thermovibrio ammonificans HB-1]
Length = 373
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP K+ + V+ + + A K + K E+++++ ++AE E D L A +
Sbjct: 46 DFWNDPKKAQSLSVERNHLEQELEAFKSVEQKIEDSEVLIEMAEEEQ-DGSLLDEAEQML 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K LD+ E+ K+L G D A VTI AG+ G WA+ L+ MY+RWA+++G+
Sbjct: 105 SDLDKTLDRLEVKKVLSGEFDKNNAIVTIHAGAGGTESCDWAQMLMRMYIRWAERKGFEV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLACVDVVP 184
++D + G+KSAT+ + YA+G+L E G H L+ P + T C +V
Sbjct: 165 EILDLQENEEAGIKSATLLIKGPYAYGFLRAEHGTHRLVRISPFDANARRHTSFCGVIVV 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
++ +++I +EDL + + G+ + A I HIPTGI V
Sbjct: 225 PEIDEDIEVEIKEEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVV 273
>gi|219849743|ref|YP_002464176.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485]
gi|254790911|sp|B8G607.1|RF2_CHLAD RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|219544002|gb|ACL25740.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485]
Length = 367
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 117/234 (50%), Gaps = 17/234 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME-----AIDYGLFKRA 61
LW+ P + E++ +L + V DL ++ + +LAE E A D RA
Sbjct: 44 LWNTPRVAQELMQRLTRLKEEVALWNDLDHRMTSLAELIELAEQEGDESLAADLAAELRA 103
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
V + + Q E+ LL GP D A ++I+AG G + WA LL MY RWA++
Sbjct: 104 ------VQREVAQRELEILLSGPYDDRDAFLSIQAGMGGTDAQDWAAMLLRMYTRWAERR 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY ++D + G+KSATIE YA+GY E G H LI N + + + A
Sbjct: 158 GYTVNLIDLSEGEEAGIKSATIEIRGPYAYGYARAEAGVHRLIRLSPFNAAHTRQTSFAR 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P ++ +P+++I EDL +F S G+ + A I H+PTGI V
Sbjct: 218 VEVMP-EVDDAPEVEIKPEDLRIDVFRSGGHGGQGVNTTDSAVRITHLPTGIVV 270
>gi|332707784|ref|ZP_08427811.1| bacterial peptide chain release factor 2 [Moorea producens 3L]
gi|332353487|gb|EGJ33000.1| bacterial peptide chain release factor 2 [Moorea producens 3L]
Length = 294
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 113/200 (56%), Gaps = 7/200 (3%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
E+ K I +L E+E D L A ++K LD++E+ +LL G D +GA +TI AG+
Sbjct: 2 EDTKAILELLELET-DDALLAEAQTNLTQLNKELDRWELEQLLSGTYDAKGAVLTINAGA 60
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WA+ LL MY RWA+ GY+ + + G+KSAT+E + A+GYL E
Sbjct: 61 GGTDAQDWADLLLRMYTRWAENHGYKVHLAELSPGDEAGIKSATLEIDGLRAYGYLKAEK 120
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIA 215
G H L+ N + + + A V+V+P ++ + +L+I ++DL ++ G+ Q++
Sbjct: 121 GTHRLVRISPFNANGKRQTSFAGVEVMP-AVDNTVELEIPEKDLEITTSRAGGKGGQNVN 179
Query: 216 K--PAACIQHIPTGIAVRGT 233
K A I HIPTG+AVR T
Sbjct: 180 KVETAVRIVHIPTGLAVRCT 199
>gi|312621634|ref|YP_004023247.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202101|gb|ADQ45428.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 372
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + + +
Sbjct: 46 FWQDIENSQKVLQKIKRIKDKIERFQKLYSQWEDLKVLTELS-IEEGNHEMSEELEKELI 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + +D++++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 105 SLERKIDEFKIEILLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKVE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+K+ TI E A+GYL E G H L+ + + + A V+V+P
Sbjct: 165 TLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+E D++I +EDL + S G+ + + A I+HIPTGI V
Sbjct: 225 -EVEDDTDIEIKEEDLEIDTYRSSGAGGQHVNKTESAVRIKHIPTGIVV 272
>gi|403252111|ref|ZP_10918424.1| protein chain release factor B [actinobacterium SCGC AAA027-L06]
gi|402914638|gb|EJX35648.1| protein chain release factor B [actinobacterium SCGC AAA027-L06]
Length = 368
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 8/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + + KL+ + +N + +R + ++ ++ +LA E+ FK R
Sbjct: 44 NLWDDPQAAQVITSKLSRAQSTINKINSIRSRLDDMPVMVELALSESDKAAAFKDVDREL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++K+++ E+ LL G D A +TI++ + G+ WA+ L+ MYVR+ ++ Y+
Sbjct: 104 DELTKVINDLEVQTLLSGEYDERDALMTIRSEAGGVEAADWAQMLMRMYVRYCERHNYKI 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V++ + G+KS T YA+G LS E G H L+ F + S H + A V+V
Sbjct: 164 DVLETSYAEEAGIKSTTFRISAAYAYGRLSVEQGTHRLVRISPFDSQSRRH-TSFAGVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VP+ +E S ++I ++DL ++ S G+ + A I H+P+GI V
Sbjct: 223 VPV-VEQSDHIEIEEKDLRVDVYRSSGPGGQGVNTTDSAVRITHLPSGIVV 272
>gi|383776055|ref|YP_005460621.1| putative peptide chain release factor 2 [Actinoplanes missouriensis
431]
gi|381369287|dbj|BAL86105.1| putative peptide chain release factor 2 [Actinoplanes missouriensis
431]
Length = 370
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ EV +LA ++ L+ LR + ++A L+ ++AE E+ D G
Sbjct: 44 DLWDDQARAQEVNSRLAYVSGEISKLERLRSRLDDAGLLLEMAEAES-DEGSIAEVGDEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +++ E+ LL G D A V I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 TTLTKAVEEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YAFG LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYDTSYAEEAGLKSATFAVKVPYAFGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVM 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
P+ +E + + I D ++ ++ S G+ + A + HIPTGI
Sbjct: 223 PV-VEQTDHIDIPDNEIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGI 269
>gi|87300848|ref|ZP_01083690.1| peptide chain release factor 2 [Synechococcus sp. WH 5701]
gi|87284719|gb|EAQ76671.1| peptide chain release factor 2 [Synechococcus sp. WH 5701]
Length = 355
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ + + +L + + L+ R ++A+ +L ++E D L A
Sbjct: 26 DFWDDQQQAQKQMRQLDEVKAQLEQLQQWRTAVDDARATLELYDLEP-DEELLSEANGGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 QSLKAALDRWELERLLSGPYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE + YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 SVDELSEGEEAGIKSCTIEIDGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P LE L I D+DL + S G+ + + A I H+PTG+AVR T
Sbjct: 205 P-KLEEDVKLDIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHVPTGLAVRCT 256
>gi|339627122|ref|YP_004718765.1| peptide chain release factor 2 [Sulfobacillus acidophilus TPY]
gi|339284911|gb|AEJ39022.1| peptide chain release factor 2 [Sulfobacillus acidophilus TPY]
Length = 337
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP ++ + +L + + L + +E + +LA E D L ++ + +
Sbjct: 5 DFWNDPKRAERITRQLHIVTGPLTEYETLVRRFQEWQEFVELANAEG-DQDLLRQQLKEA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L E+ +LRGP D E A +T+ +G+ G + W + LL MY+RWA++ G+R
Sbjct: 64 EQLAAALRHLELELILRGPYDHEDAILTLHSGAGGTEAQDWVQMLLRMYLRWAERRGFRT 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D+ + G+KS T+E E AFG+L E G H L+ + S + A V+VV
Sbjct: 124 QIIDQLPGEEAGLKSVTVEVHGENAFGFLRPERGVHRLVRISPFDASGRRHTSFASVEVV 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E+ ++I E+L F + G+ + + A I H+PTGI V
Sbjct: 184 P-DIESDEAVEIRPEELRIDTFRASGAGGQHINKTESAVRITHLPTGIVV 232
>gi|379008496|ref|YP_005257947.1| peptide chain release factor 2 [Sulfobacillus acidophilus DSM
10332]
gi|361054758|gb|AEW06275.1| peptide chain release factor 2 [Sulfobacillus acidophilus DSM
10332]
Length = 376
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP ++ + +L + + L + +E + +LA E D L ++ + +
Sbjct: 44 DFWNDPKRAERITRQLHIVTGPLTEYETLVRRFQEWQEFVELANAEG-DQDLLRQQLKEA 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L E+ +LRGP D E A +T+ +G+ G + W + LL MY+RWA++ G+R
Sbjct: 103 EQLAAALRHLELELILRGPYDHEDAILTLHSGAGGTEAQDWVQMLLRMYLRWAERRGFRT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D+ + G+KS T+E E AFG+L E G H L+ + S + A V+VV
Sbjct: 163 QIIDQLPGEEAGLKSVTVEVHGENAFGFLRPERGVHRLVRISPFDASGRRHTSFASVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E+ ++I E+L F + G+ + + A I H+PTGI V
Sbjct: 223 P-DIESDEAVEIRPEELRIDTFRASGAGGQHINKTESAVRITHLPTGIVV 271
>gi|433456579|ref|ZP_20414617.1| peptide chain release factor 2 [Arthrobacter crystallopoietes
BAB-32]
gi|432196076|gb|ELK52562.1| peptide chain release factor 2 [Arthrobacter crystallopoietes
BAB-32]
Length = 371
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ + L+ L + ++ +++ +L + +A D A
Sbjct: 44 DLWDDPAAAQKITSKLSHRQSELERLEKLASRIDDLEVLVELGK-DAGDEDSLTEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI++G+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 QALKKSLSDLEVVTLLSGEYDEREAVVTIRSGAGGVDAADFAEMLMRMYLRWAERHGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 SVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D D+ +F S G+ + A + H+PTGI V
Sbjct: 223 PL-IEQTDSIDIPDNDIKVDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVV 271
>gi|159902739|ref|YP_001550083.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9211]
gi|159887915|gb|ABX08129.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9211]
Length = 356
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ + + +L + + L D E+A++ +L E+E D + A +
Sbjct: 27 FWNDQQKAKKEMRRLDEVKAQLKKLVDWDAAIEDAQVSLELYELEPDDE-MLAEAIKGLD 85
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD +E+ +LL G D EG ++I AG+ G + WA+ LL MY RWAD G +
Sbjct: 86 NLKSDLDLWELERLLSGQYDKEGVVLSINAGAGGTDAQDWAQMLLRMYTRWADDHGMKVT 145
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V + + G+KSAT+E + YA+GYL E G H L+ N + + + A V+++P
Sbjct: 146 VDELSEGEEAGIKSATLEIDGRYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGVEIMP 205
Query: 185 LFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
LE +L I ++DL + S G+ + + A I H+P+G+AVR T
Sbjct: 206 -KLEEEVELDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGLAVRCT 256
>gi|346223954|ref|ZP_08845096.1| hypothetical protein AtheD1_02201 [Anaerophaga thermohalophila DSM
12881]
Length = 334
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 15/236 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL---AEMEAIDYGLFKRAY 62
+ WDDP K+ + + KL VNA +D++ EE ++ + E E D L Y
Sbjct: 7 DFWDDPKKAEQKMKKLKALKSWVNAYEDVKNAIEETSVLLEFLKEGEAEEADVDL---QY 63
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++ KL++ E+ +L+ D GA + I AG+ G + WAE L+ MY+RW ++ G
Sbjct: 64 KKTV---KLIEDLELRNMLQKEEDKLGAILKINAGAGGTESQDWAEMLMRMYIRWGERHG 120
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ + G+KS T++FE +YA+GYL E G H L+ N + + V
Sbjct: 121 YKVTETNYQEGDEAGIKSVTLQFEGDYAYGYLKSENGVHRLVRLSPFNAANKRMTSFTSV 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+PL ++ + +++I+ D+ F S G+ + + ++H PTGI + T
Sbjct: 181 FVIPL-IDDTIEIEINPADITWETFRSSGAGGQNVNKVETGVRLRHAPTGIVIENT 235
>gi|297243831|ref|ZP_06927761.1| protein chain release factor B [Gardnerella vaginalis AMD]
gi|415708622|ref|ZP_11462636.1| peptide chain release factor 2 [Gardnerella vaginalis 6420LIT]
gi|415710294|ref|ZP_11463683.1| peptide chain release factor 2 [Gardnerella vaginalis 6420B]
gi|296888252|gb|EFH26994.1| protein chain release factor B [Gardnerella vaginalis AMD]
gi|388054521|gb|EIK77459.1| peptide chain release factor 2 [Gardnerella vaginalis 6420LIT]
gi|388055534|gb|EIK78435.1| peptide chain release factor 2 [Gardnerella vaginalis 6420B]
Length = 378
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + E+ K + +L E E D A
Sbjct: 45 LWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGEEEG-DADSMNEAQEELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 NIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|260436566|ref|ZP_05790536.1| peptide chain release factor 2 [Synechococcus sp. WH 8109]
gi|260414440|gb|EEX07736.1| peptide chain release factor 2 [Synechococcus sp. WH 8109]
Length = 356
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + ++ L R ++A+ +L E++ D L + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAQLSQLAGWRGAVDDAQATLELYELDP-DEDLLQEAQNGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+ G +
Sbjct: 85 NQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P +E L I ++DL + S G+ + + A I HIPTG+ VR T
Sbjct: 205 P-KIEEDVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCT 256
>gi|452993792|emb|CCQ94608.1| Peptide chain release factor 2 [Clostridium ultunense Esp]
Length = 346
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D K+ +++ K+++ V +DL E+ +++ +L+ +E DY ++K
Sbjct: 24 DFWQDSDKAQKIMQKISNLKGAVKEYEDLLNSIEDLEVLIELS-LEEEDYHVYKEIKENF 82
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
VS +++++S LL G D A ++I +G+ G+ + WAE L MY RWA+++G+R
Sbjct: 83 EKVSYEAEKFKLSTLLNGEYDKNNAILSIHSGAGGLEAQDWAEMLFRMYKRWAEQKGFRV 142
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D GG+KS T+ + AFGYL E G H L+ + S + A +D+
Sbjct: 143 EILDLLSDTEGGIKSVTMLIKGFNAFGYLKSEKGVHRLVRISPFDSSNRRHTSFASIDIY 202
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ D++I++ D+ + + G+ + A + HIPTGI V+
Sbjct: 203 PE-LDDDMDIEINESDIKIDTYRASGAGGQHVNTTDSAVRVTHIPTGIIVQ 252
>gi|259046384|ref|ZP_05736785.1| peptide chain release factor 2 [Granulicatella adiacens ATCC 49175]
gi|259036929|gb|EEW38184.1| peptide chain release factor 2 [Granulicatella adiacens ATCC 49175]
Length = 361
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+N+V+ K + + + + EE L+ ++ + E D + A
Sbjct: 31 SFWDDSEKANQVIQKNNELKSIYDTFHKMELAHEETSLLFEMYKEEP-DEEVHAEIVEAI 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L +YE+S LL GP+D A + I G+ G + W LL MY+RWA+K GYR
Sbjct: 90 QSLEKDLQRYELSMLLNGPHDKNSAILEIHPGAGGTESQDWGSMLLRMYMRWAEKHGYRV 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ E A+GYL E G H L+ + + + VDVV
Sbjct: 150 ETVDYQDGDEAGIKSVTLSIEGLNAYGYLRSEKGVHRLVRISPFDAAGKRHTSFCSVDVV 209
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ D++I+ +DL ++ + G+ + A I HIPTGI +
Sbjct: 210 PQ-MDGDIDIEINPDDLKVDVYRASGAGGQHINKTSSAVRITHIPTGIVTQ 259
>gi|167628822|ref|YP_001679321.1| peptide chain release factor 2 [Heliobacterium modesticaldum Ice1]
gi|167591562|gb|ABZ83310.1| peptide chain release factor 2 [Heliobacterium modesticaldum Ice1]
Length = 333
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 7/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M++ WDD ++ + + +L V A +DLR + E+ ++ +L E D +
Sbjct: 1 MIQEPGFWDDTERAQKTMQELTGLKDKVKAYRDLRSQWEDLCVLRELG-AEENDAEILAE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ LD++ + LL GP D A +T+ AG+ G W E LL MY+RW +K
Sbjct: 60 IEAGIQTITAELDRWHLELLLNGPYDRNNALLTLHAGAGGTEAMDWNEMLLRMYIRWGEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY+ ++D G+KSAT+ E A+GYL GE G H L+ + S + A
Sbjct: 120 RGYKVELLDSLPGDEAGIKSATLSVVGENAYGYLKGEMGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
++V+P + ++QI EDL F + G+ + + A I HIPTGI V
Sbjct: 180 SLEVLP-EVSDGAEIQIRPEDLKVDTFRAGGAGGQHVNKTESAVRITHIPTGIVV 233
>gi|88856358|ref|ZP_01131017.1| peptide chain release factor 2 [marine actinobacterium PHSC20C1]
gi|88814442|gb|EAR24305.1| peptide chain release factor 2 [marine actinobacterium PHSC20C1]
Length = 368
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V L+ + + + + ++ +++ QLA E+ D A
Sbjct: 44 DLWDDTDKAQKVTSDLSHRQAELAKINSISNRLDDLEIMVQLANEES-DAQAGADARAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A +TI+AG+ G+ +AE LL MY+R+A++ Y
Sbjct: 103 TGIKKTLGDLEVQTLLNGEFDQRPAVITIRAGAGGVDAADFAEMLLRMYLRYAEQHSYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
RV+D + G+KSAT E + +AFG LS E G H L+ N + + + A V+VV
Sbjct: 163 RVLDTSYAEEAGIKSATFEVDAPFAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +ET+ +++ + D+ +F S G+ + A I H+PTGI V
Sbjct: 223 PL-IETTDVVEVPENDIRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 271
>gi|222530070|ref|YP_002573952.1| hypothetical protein Athe_2103 [Caldicellulosiruptor bescii DSM
6725]
gi|222456917|gb|ACM61179.1| hypothetical protein Athe_2103 [Caldicellulosiruptor bescii DSM
6725]
Length = 372
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D S +L K+ + + L + E+ K++ +L+ +E ++ + + + +
Sbjct: 46 FWQDIENSQRILQKIKRIKDKIERFQKLYSQWEDLKVLTELS-IEEGNHEMSEELEKELI 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + +D++++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 105 SLERKIDEFKIEILLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKVE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+K+ TI E A+GYL E G H L+ + + + A V+V+P
Sbjct: 165 TLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+E D++I +EDL + S G+ + + A I+HIPTGI V
Sbjct: 225 -EVEDDTDIEIKEEDLEIDTYRSSGAGGQHVNKTESAVRIKHIPTGIVV 272
>gi|332671116|ref|YP_004454124.1| peptide chain release factor 2 [Cellulomonas fimi ATCC 484]
gi|332340154|gb|AEE46737.1| peptide chain release factor 2 [Cellulomonas fimi ATCC 484]
Length = 382
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRA 64
NLWDDP + +V L+ + ++ + L + ++ + + +L EME D A
Sbjct: 56 NLWDDPDAAQKVTSALSATQAELDRVAKLGGRIDDLETLVELGVEME--DEDSLAEAEVE 113
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 114 LTGIRKDLGELEVRTLLNGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYP 173
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V+D + G+KSAT E + YAFG+LS E G H L+ + + + A V+V
Sbjct: 174 TTVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 233
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +E + ++I + ++ +F S G+ + A + HIPTGI V
Sbjct: 234 IPL-IEQTDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 283
>gi|134097701|ref|YP_001103362.1| peptide chain release factor 2 [Saccharopolyspora erythraea NRRL
2338]
gi|291006339|ref|ZP_06564312.1| putative peptide chain release factor 2 [Saccharopolyspora
erythraea NRRL 2338]
gi|166225115|sp|A4F8R2.1|RF2_SACEN RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|133910324|emb|CAM00437.1| putative peptide chain release factor 2 [Saccharopolyspora
erythraea NRRL 2338]
Length = 367
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L + +KDLR + E+ +++ +L+E E D GL + A
Sbjct: 43 DLWDDVEHAQRVSSQLVHRQSELRKIKDLRQRVEDLEVLYELSEDEGDDSGLAE-ADSER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ E+ LL G D A VTI+A + G+ +AE L+ MYVRWA++ Y
Sbjct: 102 TKLKKDLEALEVRTLLSGDYDQREAVVTIRAEAGGVDAADFAEMLMRMYVRWAERHEYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET ++I ++D+ +F S G+ + A I HIPTGI V
Sbjct: 222 PVVEETDH-VEIPEKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVV 270
>gi|227497420|ref|ZP_03927652.1| peptide chain release factor RF2 [Actinomyces urogenitalis DSM
15434]
gi|226833096|gb|EEH65479.1| peptide chain release factor RF2 [Actinomyces urogenitalis DSM
15434]
Length = 374
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++DL + ++ + + ++A E D L A
Sbjct: 43 DLWDDPDAAQVVTSNLSHAQADLKRVEDLGSRIDDLEAMVEMAGEEEGDDAAELLAEAES 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 DLASISKDLSELEIRTLLSGEYDQRDAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 ATKVLDTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ +++ + D+ +F S G+ + A I H+PTG+ V
Sbjct: 223 VIPL-IESTDHIEVPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 273
>gi|330465934|ref|YP_004403677.1| peptide chain release factor 2 [Verrucosispora maris AB-18-032]
gi|328808905|gb|AEB43077.1| peptide chain release factor 2 [Verrucosispora maris AB-18-032]
Length = 373
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ + L LR + ++A ++ +LAE EA D G+
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEIEKLGSLRSRIDDANVLLELAEAEA-DSGVLSEVESEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLAKAIQEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ ++ S G+ + A I HIPTGI V
Sbjct: 223 PV-VEQTDSIDIPENEMRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 271
>gi|313884513|ref|ZP_07818274.1| peptide chain release factor 2 [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620297|gb|EFR31725.1| peptide chain release factor 2 [Eremococcus coleocola
ACS-139-V-Col8]
Length = 341
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 9/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +V+ +L ++ ++DL + ++ + +L E E+ D + A
Sbjct: 16 DFWDDNDKAQKVISQLNEAKASYQTIQDLVSQVDDLGMALELYE-ESQDLDMLSEAEDIM 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
SK L+ YE+ LL GP+D A + I G+ G + W LL MY RWADK+G++
Sbjct: 75 TVTSKALNNYELQLLLSGPHDSANAILEIHPGAGGTESQDWGSMLLRMYQRWADKQGFQV 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D G+KS T+E + A+GYL E G H L+ F + + H + A ++V
Sbjct: 135 EVLDYQAGDEAGIKSVTLEIKGHNAYGYLKSEKGVHRLVRISPFDSNARRH-TSFASIEV 193
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ S +++I+ +D+ + + G+ + A I HIPTGI +
Sbjct: 194 TPE-MDDSIEIEINPDDIRVDTYRASGAGGQHINKTSSAVRITHIPTGIVTQ 244
>gi|310287040|ref|YP_003938298.1| peptide chain release factor 2 with RF-1 domain [Bifidobacterium
bifidum S17]
gi|311063912|ref|YP_003970637.1| peptide chain release factor 2 (RF-2) PrfB [Bifidobacterium bifidum
PRL2010]
gi|313139738|ref|ZP_07801931.1| peptide chain release factor 2 [Bifidobacterium bifidum NCIMB
41171]
gi|390936387|ref|YP_006393946.1| peptide chain release factor [Bifidobacterium bifidum BGN4]
gi|421733301|ref|ZP_16172411.1| peptide chain release factor 2 [Bifidobacterium bifidum LMG 13195]
gi|421736387|ref|ZP_16175201.1| peptide chain release factor 2 [Bifidobacterium bifidum IPLA 20015]
gi|309250976|gb|ADO52724.1| peptide chain release factor 2 with RF-1 domain [Bifidobacterium
bifidum S17]
gi|310866231|gb|ADP35600.1| PrfB Bacterial Peptide Chain Release Factor 2 (RF-2)
[Bifidobacterium bifidum PRL2010]
gi|313132248|gb|EFR49865.1| peptide chain release factor 2 [Bifidobacterium bifidum NCIMB
41171]
gi|389890000|gb|AFL04067.1| peptide chain release factor [Bifidobacterium bifidum BGN4]
gi|407078815|gb|EKE51611.1| peptide chain release factor 2 [Bifidobacterium bifidum LMG 13195]
gi|407296325|gb|EKF15893.1| peptide chain release factor 2 [Bifidobacterium bifidum IPLA 20015]
Length = 375
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + + L + + E+ + + +LA+ EA D A
Sbjct: 45 LWDDPENAQKVTSRLSAAQAQLKRLNEANRRIEDVETLVELAQEEA-DADSLSEAQSEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 SIAQELDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 224 L-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|415720929|ref|ZP_11468173.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Bmash]
gi|388061190|gb|EIK83847.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Bmash]
Length = 373
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+AK + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDAKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GAIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|406575508|ref|ZP_11051211.1| peptide chain release factor 2 [Janibacter hoylei PVAS-1]
gi|404555081|gb|EKA60580.1| peptide chain release factor 2 [Janibacter hoylei PVAS-1]
Length = 390
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP K+ V L+ + + + + + ++ + + +L + E D A
Sbjct: 43 DLWDDPDKAQGVTSALSRANAELERVHSMDARIDDLEALVELGQEEG-DAETLTEAEGEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + Q E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 AKITTAVGQLEVRTLLSGEYDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 KVMDTSYAEEAGLKSATFEVNVPYAYGNLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D +L +F S G+ + A + HIPTGI V
Sbjct: 222 PL-IEGTDSIEIPDNELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 270
>gi|302390246|ref|YP_003826067.1| peptide chain release factor 2 (bRF-2) [Thermosediminibacter oceani
DSM 16646]
gi|302200874|gb|ADL08444.1| bacterial peptide chain release factor 2 (bRF-2)
[Thermosediminibacter oceani DSM 16646]
Length = 365
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD + ++L L + V + ++ K E+ + +L +E D GL+ +
Sbjct: 43 NFWDDAQAAQKILQTLNQLKETVEKFEAIKKKWEDLMTLIELG-IEDHDEGLYGEISAEA 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K ++ + LLRG D A +++ AG+ G + W + LL MY RWA+ +GY+
Sbjct: 102 EEFKKEFEEMRLKTLLRGRYDKNNAILSLHAGAGGTEAQDWVQMLLRMYTRWAEDKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSATI E YA+GYL E G H L+ + + + A VDV+
Sbjct: 162 KVLDMLPGEEAGIKSATILVEGPYAYGYLKSEQGVHRLVRISPFDAAGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E +++I EDL F S G+ + + A I HIPTGI V
Sbjct: 222 P-EIEDDIEVEIKPEDLKIETFRSGGAGGQYVNKTESAVRITHIPTGIVV 270
>gi|386846030|ref|YP_006264043.1| Peptide chain release factor 2 [Actinoplanes sp. SE50/110]
gi|359833534|gb|AEV81975.1| Peptide chain release factor 2 [Actinoplanes sp. SE50/110]
Length = 381
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ ++ L+ LR + ++A L+ ++AE E D G
Sbjct: 55 DLWDDQARAQDVNSRLSYVSGEISKLERLRTRLDDAGLLLEMAEAEG-DAGSVAEVGDEI 113
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +++ E+ LL G D A V I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 114 TALTKAIEEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 173
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 174 EVYDTSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVM 233
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D +L ++ S G+ + A + HIPTGI V
Sbjct: 234 PV-VEQTDHIDIPDNELRTDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 282
>gi|386866739|ref|YP_006279733.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385700822|gb|AFI62770.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 377
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDD + +V+ +L+ + LK L A +A L E+ E D A
Sbjct: 45 LWDDSEHAQKVMSQLS---ACQSQLKHLSSAASRLDDVATLVELGQEENDADTLHEAQTE 101
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K LDQ E+ L+ G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 102 IESIQKDLDQMEIETLMDGEYDSRSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+V
Sbjct: 162 AKVMDTSYAEEAGIKSATFQIDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVEV 221
Query: 183 VPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VPL T PD +I + S P G+ + A I H+PTGI V
Sbjct: 222 VPLVEATDHIEVPDSEIRVDTYCASGPG--GQGVNTTYSAVRITHLPTGIVV 271
>gi|121535512|ref|ZP_01667321.1| peptide chain release factor 2 [Thermosinus carboxydivorans Nor1]
gi|121305931|gb|EAX46864.1| peptide chain release factor 2 [Thermosinus carboxydivorans Nor1]
Length = 332
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ ++ ++ ++ + LR + + + QL M+ D ++
Sbjct: 9 DFWDDPAEAQKIAQEVTALKDSISQYQQLRSRHSDVAALWQLG-MDEGDDSVYDEVAAEL 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K L+Q E++ LL G D A +T+ AG+ G + WA+ LL MY+RWA+K GY+
Sbjct: 68 RALAKDLEQLELTVLLTGEYDANNAILTLHAGAGGTEAQDWAQMLLRMYMRWAEKRGYKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSATI A+GYL E G H L+ + S + A VDV+
Sbjct: 128 ELLDALAGEEAGIKSATITVAGRNAYGYLKAEKGVHRLVRISPFDASGRRHTSFAAVDVM 187
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ + ++ I+ DL F S G+ + + A I H+PTGI V+
Sbjct: 188 P-EIDDNTEIVINPADLKIDTFRSGGAGGQHVNKTESAVRITHLPTGIVVQ 237
>gi|325963891|ref|YP_004241797.1| peptide chain release factor 2 (bRF-2) [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469978|gb|ADX73663.1| bacterial peptide chain release factor 2 (bRF-2) [Arthrobacter
phenanthrenivorans Sphe3]
Length = 371
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + ++ +L+ + L +L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPSAAQKITSRLSHRQSELERLNNLASRIDDLEVLVELGQDED-DAASMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 ESIKKALKELEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D ++ +F S G+ + A + HIPTG V
Sbjct: 223 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVV 271
>gi|427391491|ref|ZP_18885897.1| peptide chain release factor 2 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732134|gb|EKU94946.1| peptide chain release factor 2 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 394
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 11/235 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRAY-- 62
NLWDD ++ EV +L+ + ++ L L + ++ + + ++A+ EA D K Y
Sbjct: 60 NLWDDQDRAQEVTSQLSHAQAELDKLTGLEERLDDLEALLEIADEEAETDASSAKDLYGE 119
Query: 63 --RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ V K LD+ ++ LL G D A VTI++G+ G+ + E L MY+RW +
Sbjct: 120 LREETTAVEKTLDELQIRTLLSGKYDEREAVVTIRSGAGGVDAADFTEMLQRMYLRWGAR 179
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY +V++ + G+KS T E YA+G L+GE G H L+ + + + A
Sbjct: 180 RGYPTKVLNTSYAEEAGIKSTTFEVSAPYAYGTLAGEAGTHRLVRISPFDNQARRQTSFA 239
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+PL +E + + I + D+ +F S G+ + A I H+PTGI V
Sbjct: 240 AVEVIPL-IEQTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 293
>gi|415703468|ref|ZP_11459284.1| peptide chain release factor 2 [Gardnerella vaginalis 284V]
gi|415716587|ref|ZP_11466579.1| peptide chain release factor 2 [Gardnerella vaginalis 1400E]
gi|388052508|gb|EIK75530.1| peptide chain release factor 2 [Gardnerella vaginalis 284V]
gi|388057204|gb|EIK80037.1| peptide chain release factor 2 [Gardnerella vaginalis 1400E]
Length = 380
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 45 LWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 NIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|412993319|emb|CCO16852.1| peptide chain release factor 2 [Bathycoccus prasinos]
Length = 423
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 10/188 (5%)
Query: 54 DYGLFK-RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
DY L + A R+S+ ++++L ++E K+L G D G+ + I AG+ G + WAE L
Sbjct: 137 DYELLRTEAIRSSIKLNEMLSEFETEKMLGGKYDKLGSELFIYAGAGGTDAQDWAEMLER 196
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNG 169
Y+ WA K G++ + + + G+KS TIE E YAFG+L E G H L+ F G
Sbjct: 197 AYLNWAQKRGFKATITSRNKGEEAGIKSVTIEIEGTYAFGFLRSEKGTHRLVRLSPFKKG 256
Query: 170 SFPHEATLACVDVVPLFLETSP---DLQISDEDL---LFSSPSLPGERQSIAKPAACIQH 223
+ + A VDV PLF + S ++ I ++DL S G+ + + A I+H
Sbjct: 257 DSSRQTSFAAVDVCPLFEDESEEAGEMNIPEKDLEITTMRSGGAGGQNVNKVETAVRIRH 316
Query: 224 IPTGIAVR 231
IPT I VR
Sbjct: 317 IPTDITVR 324
>gi|315606122|ref|ZP_07881153.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 180
str. F0310]
gi|315312404|gb|EFU60490.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 180
str. F0310]
Length = 372
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + EV L+ ++ + + + ++ + + ++A E D G A A
Sbjct: 43 DLWDDPSAAQEVTSALSHRQSELDRITQMSERIDDLEAMVEMA-AEDPDEGAEILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 GDLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 221 EVIPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|298252599|ref|ZP_06976393.1| protein chain release factor B [Gardnerella vaginalis 5-1]
gi|297532963|gb|EFH71847.1| protein chain release factor B [Gardnerella vaginalis 5-1]
Length = 378
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 45 LWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQEELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 NIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|220913146|ref|YP_002488455.1| peptide chain release factor 2 [Arthrobacter chlorophenolicus A6]
gi|254790908|sp|B8HBH8.1|RF2_ARTCA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|219860024|gb|ACL40366.1| peptide chain release factor 2 [Arthrobacter chlorophenolicus A6]
Length = 371
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPAAAQKITSRLSHRQSELERLTTLASRIDDLEVLVELGQDEG-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 ESIQKALKNLEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D ++ +F S G+ + A + HIPTG+ V
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGVVV 271
>gi|283783522|ref|YP_003374276.1| peptide chain release factor 2 [Gardnerella vaginalis 409-05]
gi|283441040|gb|ADB13506.1| peptide chain release factor 2 [Gardnerella vaginalis 409-05]
Length = 378
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 45 LWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQEELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 NIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|444305081|ref|ZP_21140868.1| peptide chain release factor 2 [Arthrobacter sp. SJCon]
gi|443482616|gb|ELT45524.1| peptide chain release factor 2 [Arthrobacter sp. SJCon]
Length = 371
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPAAAQKITSRLSHRQSELERLTSLESRIDDLEVLVELGQDED-DADSMGEAATEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L + E+ LL G D A V+I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 ESIRKALKELEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D ++ +F S G+ + A + HIPTG V
Sbjct: 223 PL-IEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVV 271
>gi|452821121|gb|EME28155.1| peptide chain release factor RF-2 [Galdieria sulphuraria]
Length = 419
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-DYGLFKRAYRA 64
+ W++ T++ +VL L+ + + ++ + QL E D L + A +
Sbjct: 86 SFWENKTQAEKVLKDLSSKRYKLEKFSSWEQRLQDLQAYLQLQSTEGEPDSSLLEEATQH 145
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ + K L+++E L G DV A +TI AG+ G + WA LL MY RW +++ +
Sbjct: 146 IVQLKKELNRWETQHLFSGRYDVNAAMLTITAGAGGTDAQDWASLLLRMYTRWCERQDFS 205
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
VVD + GVKSA ++ + EYA+GYL GE GAH L+ N + + + A VDV
Sbjct: 206 FTVVDIADGEEAGVKSAYLQIQNEYAYGYLQGEKGAHRLVRLSPFNANNKRQTSFAGVDV 265
Query: 183 VPLFLETSPDLQ-ISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVR 231
+PL E + I EDL+ ++ G+ Q++ K A I HIP+GI VR
Sbjct: 266 IPLLQEEELETLIIPPEDLVVTTMRAGGKGGQNVNKVETAVRIHHIPSGIQVR 318
>gi|423351149|ref|ZP_17328800.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
gi|404386822|gb|EJZ81959.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
Length = 358
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 12/230 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + + LK+LR + ++ +IA LAE E + L
Sbjct: 33 LWDDPPHAQQVTTELSATQAKLRRLKELRQRVDDLPVIADLAEEEG-----EPETFTEEL 87
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + +D+ E++ LL G D A +TI++G+ G+ WAE L+ MY RWA++ ++
Sbjct: 88 DSLRAAVDRLEVTTLLSGEYDEREAVITIRSGAGGVDAADWAEMLMRMYTRWAERHDHQV 147
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 148 EVFDVSYAEEAGIKSATFVVHGEYMYGELSVEQGAHRLVRLSPFDNQNRRQTSFAEVEVL 207
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ ++ S G+ + A + H+PTGI V
Sbjct: 208 PV-VEQTDHIDIPESEIRVDVYRSSGPGGQSVNTTDSAVRMTHLPTGIVV 256
>gi|171741050|ref|ZP_02916857.1| hypothetical protein BIFDEN_00116 [Bifidobacterium dentium ATCC
27678]
gi|283455565|ref|YP_003360129.1| peptide chain release factor 2 [Bifidobacterium dentium Bd1]
gi|171276664|gb|EDT44325.1| peptide chain release factor 2 [Bifidobacterium dentium ATCC 27678]
gi|283102199|gb|ADB09305.1| prfB Bacterial Peptide Chain Release Factor 2 (RF-2)
[Bifidobacterium dentium Bd1]
Length = 380
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDDP + ++ KL+ V + LK L ++ + L E+ E D + A
Sbjct: 49 LWDDPENAQKITSKLS---AVQSQLKRLSSASQRIDDVETLVELGREEEDADTLEEAKNE 105
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 106 IEGIRHDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYK 165
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+V
Sbjct: 166 AKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVEV 225
Query: 183 VPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VPL T PD +I + S P G+ + A I HIPTGI V
Sbjct: 226 VPLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVV 275
>gi|395237481|ref|ZP_10415549.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
gi|394487252|emb|CCI83637.1| peptide chain release factor 2 [Turicella otitidis ATCC 51513]
Length = 369
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 12/230 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + + LK+LR + ++ +IA LAE E + L
Sbjct: 44 LWDDPPHAQQVTTELSATQAKLRRLKELRQRVDDLPVIADLAEEEG-----EPETFTEEL 98
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + +D+ E++ LL G D A +TI++G+ G+ WAE L+ MY RWA++ ++
Sbjct: 99 DSLRAAVDRLEVTTLLSGEYDEREAVITIRSGAGGVDAADWAEMLMRMYTRWAERHDHQV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 EVFDVSYAEEAGIKSATFVVHGEYMYGELSVEQGAHRLVRLSPFDNQNRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ ++ S G+ + A + H+PTGI V
Sbjct: 219 PV-VEQTDHIDIPESEIRVDVYRSSGPGGQSVNTTDSAVRMTHLPTGIVV 267
>gi|183602511|ref|ZP_02963876.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683556|ref|YP_002469939.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis AD011]
gi|241190585|ref|YP_002967979.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195991|ref|YP_002969546.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|384190832|ref|YP_005576580.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis BB-12]
gi|384191974|ref|YP_005577721.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
gi|384193583|ref|YP_005579329.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195141|ref|YP_005580886.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis V9]
gi|387820453|ref|YP_006300496.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis B420]
gi|387822124|ref|YP_006302073.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|423679110|ref|ZP_17653986.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|183218152|gb|EDT88798.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621206|gb|ACL29363.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis AD011]
gi|240248977|gb|ACS45917.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250545|gb|ACS47484.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178324|gb|ADC85570.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis BB-12]
gi|295793572|gb|ADG33107.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis V9]
gi|340364711|gb|AEK30002.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
gi|345282442|gb|AEN76296.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041612|gb|EHN18103.1| peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|386653154|gb|AFJ16284.1| Peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis B420]
gi|386654732|gb|AFJ17861.1| Peptide chain release factor 2 [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 377
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDD + +V+ +L+ + LK L A +A L E+ E D A
Sbjct: 45 LWDDSEHAQKVMSQLS---ACQSQLKHLSSAASRLDDVATLIELGQEENDADTLHEAQTE 101
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K LDQ E+ L+ G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 102 IESIQKDLDQMEIETLMDGEYDSRSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+V
Sbjct: 162 AKVMDTSYAEEAGIKSATFQIDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVEV 221
Query: 183 VPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VPL T PD +I + S P G+ + A I H+PTGI V
Sbjct: 222 VPLVEATDHIEVPDSEIRVDTYCASGPG--GQGVNTTYSAVRITHLPTGIVV 271
>gi|415705167|ref|ZP_11460438.1| peptide chain release factor 2 [Gardnerella vaginalis 75712]
gi|388051889|gb|EIK74913.1| peptide chain release factor 2 [Gardnerella vaginalis 75712]
Length = 380
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 45 LWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 SIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|296268776|ref|YP_003651408.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833]
gi|296091563|gb|ADG87515.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833]
Length = 378
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP K+ V +L+ VN +++L + E+ ++ +LA E D A R
Sbjct: 44 DLWNDPEKAQRVTSRLSHLQGEVNRIEELARRLEDLPVLFELAAEEG-DQEALAEAEREL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + E+ LL G D A +TI A + G+ WA+ LL MY+RWA+++GY
Sbjct: 103 AKLKSDIGALEVRTLLSGEYDEREALITINAQAGGVDAADWAQMLLRMYLRWAERKGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KS T + YA+G L GE G H L+ + + + A VDV+
Sbjct: 163 EIYDTSYAEEAGIKSVTFTVKAPYAYGTLKGEHGTHRLVRISPFDNQARRQTSFAGVDVM 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + D++I+++++ ++ S G+ + A I H+PTGI V
Sbjct: 223 PV-VEQTDDIEINEDEIRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|124024969|ref|YP_001014085.1| peptide chain release factor 2 [Prochlorococcus marinus str.
NATL1A]
gi|123960037|gb|ABM74820.1| peptide chain release factor RF-2 [Prochlorococcus marinus str.
NATL1A]
Length = 313
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 7/204 (3%)
Query: 35 RYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTI 94
R E+A L +L E++ +D + A+ + + LD++E +LL G D EGA ++I
Sbjct: 18 RGAIEDANLSLELYELD-LDEEILSEAHNGLEKLKQELDRWETERLLSGIYDKEGAVLSI 76
Query: 95 KAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYL 154
AG+ G + WA+ LL MY RWAD G + + + + G+KS TIE E YA+G+L
Sbjct: 77 NAGAGGTDAQDWAQMLLRMYTRWADNNGMKVIINELSEGEEAGIKSVTIEIEGVYAYGFL 136
Query: 155 SGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFS---SPSLPG 209
E G H L+ N + + + A V+V+P L+ +L+I ++DL + S G
Sbjct: 137 QNEKGTHRLVRISPFNANGKRQTSFAGVEVMP-KLDEEVELEIPEKDLEITTSRSGGAGG 195
Query: 210 ERQSIAKPAACIQHIPTGIAVRGT 233
+ + + A I H+PTGIAVR T
Sbjct: 196 QNVNKVETAVRILHVPTGIAVRCT 219
>gi|385801583|ref|YP_005837986.1| peptide chain release factor 2 [Gardnerella vaginalis HMP9231]
gi|415707102|ref|ZP_11461949.1| peptide chain release factor 2 [Gardnerella vaginalis 0288E]
gi|333393731|gb|AEF31649.1| peptide chain release factor 2 [Gardnerella vaginalis HMP9231]
gi|388054102|gb|EIK77047.1| peptide chain release factor 2 [Gardnerella vaginalis 0288E]
Length = 380
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 45 LWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 SIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|309791264|ref|ZP_07685795.1| hypothetical protein OSCT_1746 [Oscillochloris trichoides DG-6]
gi|308226690|gb|EFO80387.1| hypothetical protein OSCT_1746 [Oscillochloris trichoides DG6]
Length = 361
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 112/230 (48%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V+ +L V +L + + L E E D L+
Sbjct: 38 DLWNDPRTAQGVMQQLTRLKDEVAQWTNLESQLISLDELIDLTEAEG-DATLYTEIAAEV 96
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K L Q E++ LL GP D A V+I+AG G + WA+ +L MY+RWA+ GY
Sbjct: 97 RAAQKELAQRELALLLSGPYDDRDAFVSIQAGMGGTDAQDWADMMLRMYLRWAETRGYSV 156
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD G+KSAT+E YA+G + E G H LI N + + + A V+VV
Sbjct: 157 TIVDMSAGDEAGIKSATLELRGPYAYGNIRAEAGVHRLIRLSPFNAAHTRQTSFARVEVV 216
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ +P++ I EDL +F S G+ + A + H+PTGI V
Sbjct: 217 P-EVDDAPEVTIKPEDLRIDVFRSGGHGGQGVNTTDSAVRLTHLPTGIVV 265
>gi|308235215|ref|ZP_07665952.1| peptide chain release factor 2 [Gardnerella vaginalis ATCC 14018 =
JCM 11026]
gi|311114816|ref|YP_003986037.1| peptide chain release factor RF2 [Gardnerella vaginalis ATCC 14019]
gi|415711540|ref|ZP_11464277.1| peptide chain release factor 2 [Gardnerella vaginalis 55152]
gi|417556586|ref|ZP_12207643.1| peptide chain release factor 2 [Gardnerella vaginalis 315-A]
gi|310946310|gb|ADP39014.1| peptide chain release factor RF2 [Gardnerella vaginalis ATCC 14019]
gi|333602274|gb|EGL13704.1| peptide chain release factor 2 [Gardnerella vaginalis 315-A]
gi|388058374|gb|EIK81171.1| peptide chain release factor 2 [Gardnerella vaginalis 55152]
Length = 380
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 45 LWDDSDHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIELGQEEE-DADSMSEAQEELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 SIAHELDDMEVQTLLDGEYDARAAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|311739769|ref|ZP_07713603.1| peptide chain release factor RF2 [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304842|gb|EFQ80911.1| peptide chain release factor RF2 [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 367
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + E+ ++ +LAE E D L
Sbjct: 43 SLWDDPAHAQQVTSELSAAQAKVRKLESLRVRLEDMPVMYELAEEEG-DTSLAD----DE 97
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 98 LDSLESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHK 157
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V
Sbjct: 158 VDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEV 217
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + + I D D+ ++ S G+ + A + HIPTGI V
Sbjct: 218 LPV-VEQTDHIDIPDNDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 267
>gi|443289014|ref|ZP_21028108.1| Peptide chain release factor RF-2 [Micromonospora lupini str. Lupac
08]
gi|385887692|emb|CCH16182.1| Peptide chain release factor RF-2 [Micromonospora lupini str. Lupac
08]
Length = 373
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V +L+ ++ L LR + ++A+++ +LAE EA D G+
Sbjct: 44 DLWDDQAKAQQVTSQLSYVNGEISKLGSLRSQLDDARVLLELAEAEA-DPGVLTEVEAEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TSLTKSIQEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFAVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E + + I + ++ ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-TEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 271
>gi|396584747|ref|ZP_10485197.1| peptide chain release factor 2 [Actinomyces sp. ICM47]
gi|395547582|gb|EJG15010.1| peptide chain release factor 2 [Actinomyces sp. ICM47]
Length = 373
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + ++A E D G A A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRVTQMSERIDDLEAMVEMA-AEDPDEGADILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 ADLEKLHKDLSDLEIRTLLDGEYDERNAVVTIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 221 EVIPL-IETTDHIEIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|306823395|ref|ZP_07456770.1| peptide chain release factor RF2 [Bifidobacterium dentium ATCC
27679]
gi|309802644|ref|ZP_07696748.1| peptide chain release factor 2 [Bifidobacterium dentium JCVIHMP022]
gi|304553102|gb|EFM41014.1| peptide chain release factor RF2 [Bifidobacterium dentium ATCC
27679]
gi|308220708|gb|EFO77016.1| peptide chain release factor 2 [Bifidobacterium dentium JCVIHMP022]
Length = 380
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDDP + ++ KL+ V + LK L ++ + L E+ E D + A
Sbjct: 49 LWDDPENAQKITSKLS---AVQSQLKRLASASQRIDDVETLVELGREEEDADTLEEAKNE 105
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 106 IEGIRHDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYK 165
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+V
Sbjct: 166 AKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVEV 225
Query: 183 VPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VPL T PD +I + S P G+ + A I HIPTGI V
Sbjct: 226 VPLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVV 275
>gi|404419999|ref|ZP_11001748.1| peptide chain release factor 2 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403660566|gb|EJZ15129.1| peptide chain release factor 2 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 372
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 12/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD +++ +V +L+ + + ++DLR + ++ ++ +LA EA G A A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQSEMRRVQDLRQRVDDLPVLFELAFEEAGAEGDDAVA-EAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 102 AELVKLREEIETLEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAD 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V
Sbjct: 221 VEVLPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|380302988|ref|ZP_09852681.1| peptide chain release factor 2 [Brachybacterium squillarum M-6-3]
Length = 371
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V L+ + + +L + E+ +++ +LA E D A R
Sbjct: 44 DLWDDVENAQKVSAALSHAQADRRRITELSQRIEDLEVMVELA-AEEDDADTLAEAERDF 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K +D+ E+ LL G D A VTI+AG+ G+ +AE LL MY RWA++ Y
Sbjct: 103 AGIRKTIDELEVRTLLSGEYDERSAVVTIRAGAGGVDAADFAEMLLRMYTRWAERHQYTV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVTAPFAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E++ +++ + +L +F S G+ + A + HIPTGI V
Sbjct: 223 PL-IESTDSIEVPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 271
>gi|415719555|ref|ZP_11467715.1| peptide chain release factor 2 [Gardnerella vaginalis 1500E]
gi|388059080|gb|EIK81840.1| peptide chain release factor 2 [Gardnerella vaginalis 1500E]
Length = 380
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GSIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|378550046|ref|ZP_09825262.1| hypothetical protein CCH26_08159 [Citricoccus sp. CH26A]
Length = 371
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V KL+ + +K L + E+ +++ +LA E D A
Sbjct: 44 DLWDDPEAAQKVTSKLSHRQSELERIKRLASRIEDMEIMVELAAEEDDDAARADTARELE 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K +D E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ G+
Sbjct: 104 -SIRKAMDDLEIVTLLSGEYDERDAVVTIRAGAGGVDAADFAEILMRMYLRWAEQRGWST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSYAEEAGLKSATFEVNAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E+ ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PL-IESDDSIEIPESELKIDVYRSSGPGGQSVNTTDSAVRMTHLPTGIVV 271
>gi|297571771|ref|YP_003697545.1| peptide chain release factor 2 [Arcanobacterium haemolyticum DSM
20595]
gi|296932118|gb|ADH92926.1| peptide chain release factor 2 [Arcanobacterium haemolyticum DSM
20595]
Length = 376
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 27/243 (11%)
Query: 6 NLWDDPTKSNEV-------------LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA 52
+LWDDP K+ V +VK+ + + + L D+ + E+ A AE+ A
Sbjct: 43 DLWDDPEKAQGVTSQLSHAQSELDRVVKMGERVADLETLYDMAVEESESD-AAMGAELFA 101
Query: 53 IDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
G +R V L + E+ LL G D A VTI++G+ G+ WA+ L
Sbjct: 102 EVDGELER-------VRTDLSELEIKTLLSGEYDERDAVVTIRSGAGGVDAADWAQMLQR 154
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY+RWA++ GY+ +V+D + G+KS T E YA+G LS E G H L+ +
Sbjct: 155 MYLRWAERRGYKTKVMDTSYAEEAGIKSTTFEVSAPYAYGTLSVEAGTHRLVRISPFDNQ 214
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+ + A V+V+PL +ET+ + I + +L +F S G+ + A + HIPTG
Sbjct: 215 GRRQTSFAAVEVIPL-IETTDHIDIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTG 273
Query: 228 IAV 230
I V
Sbjct: 274 IVV 276
>gi|399525176|ref|ZP_10765644.1| peptide chain release factor 2 [Atopobium sp. ICM58]
gi|398373459|gb|EJN51395.1| peptide chain release factor 2 [Atopobium sp. ICM58]
Length = 373
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + ++A + + A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVEMAAEDPDEGADILAEAEAD 102
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LDKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHGYP 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 223 IPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|126434177|ref|YP_001069868.1| peptide chain release factor 2 [Mycobacterium sp. JLS]
gi|166225109|sp|A3PWV0.1|RF2_MYCSJ RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|126233977|gb|ABN97377.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp.
JLS]
Length = 371
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|225847994|ref|YP_002728157.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644274|gb|ACN99324.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 370
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 6 NLWDDPTKSNEVLVK-------LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
N W+DP K+ E+ K L + LK+ +KDL+ QL EME D L+
Sbjct: 44 NFWNDPKKAQEISSKRNYLGEKLEEILKIDKKVKDLQD-------YIQLLEMEK-DESLY 95
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ + K L++ E+S LL D + A +T++AGS G+ W + L+ MY+RWA
Sbjct: 96 TEVEKEINHLEKELERLEISSLLSDEMDSKNAILTLQAGSGGVEACDWTQMLMRMYLRWA 155
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+ +G++ +VD G+KSATI + +A+GYL GE G H L+ + + +
Sbjct: 156 EGKGFQVEIVDYQPDDVAGIKSATIIIKGPFAYGYLKGEQGVHRLVRISPFDANKRRHTS 215
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V V+P ++ ++I++EDL F + G+ + A I HIPTGI V
Sbjct: 216 FAAVSVIP-EIDEEIKVEINEEDLRIDTFRASGAGGQHVNKTDSAVRITHIPTGIVV 271
>gi|108798578|ref|YP_638775.1| peptide chain release factor 2 [Mycobacterium sp. MCS]
gi|119867678|ref|YP_937630.1| peptide chain release factor 2 [Mycobacterium sp. KMS]
gi|123070429|sp|Q1BBL5.1|RF2_MYCSS RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|166225110|sp|A1UDD2.1|RF2_MYCSK RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|108768997|gb|ABG07719.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp.
MCS]
gi|119693767|gb|ABL90840.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp.
KMS]
Length = 371
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|119486315|ref|ZP_01620374.1| Peptide chain release factor 2 [Lyngbya sp. PCC 8106]
gi|119456528|gb|EAW37658.1| Peptide chain release factor 2 [Lyngbya sp. PCC 8106]
Length = 308
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 109/200 (54%), Gaps = 7/200 (3%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
E+ I +L E+E+ D L A ++ LD++E+ +LL P D GA +TI AG+
Sbjct: 12 EDTDAIVELLELES-DESLLAEAESNLTRLNHDLDRWELQQLLSAPYDKNGAVLTINAGA 70
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WAE LL MY RW + GY+ + + G+KS T+E E YA+GYL E
Sbjct: 71 GGTDAQDWAEMLLRMYTRWGEAHGYKVYLAELSEGDEAGIKSVTLEIEGRYAYGYLKCEK 130
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIA 215
G H L+ N + + + A V+++P+ ++ L+I ++DL ++ G+ Q++
Sbjct: 131 GTHRLVRISPFNANGKRQTSFAGVEIMPM-IDQGVHLEIPEKDLEVTTSRAGGKGGQNVN 189
Query: 216 K--PAACIQHIPTGIAVRGT 233
K A I H+PTGIAVR T
Sbjct: 190 KVETAVRIVHLPTGIAVRCT 209
>gi|400977221|ref|ZP_10804452.1| chain release factor 2 [Salinibacterium sp. PAMC 21357]
Length = 368
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ ++ L+ + + + + ++ +++ +LA E+ D +
Sbjct: 44 DLWDDTDKAQKITSDLSHRQAELAKINSISNRLDDLEIMVELANEESDDQAAADARAELA 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K L E+ LL G D A +TI+AG+ G+ +AE LL MY+R+A++ Y
Sbjct: 104 A-ITKTLGNLEVQTLLNGEFDQRPAVITIRAGAGGVDAADFAEMLLRMYLRYAEQHSYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
RV+D + G+KSAT E + +AFG LS E G H L+ N + + + A V+VV
Sbjct: 163 RVLDTSYAEEAGIKSATFEVDAPFAFGTLSVEAGTHRLVRMSPFNSAGKRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +ET+ +++ + D+ +F S G+ + A I H+PTGI V
Sbjct: 223 PL-IETTDVVEVPENDIRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 271
>gi|415728929|ref|ZP_11472267.1| peptide chain release factor 2 [Gardnerella vaginalis 6119V5]
gi|388064929|gb|EIK87444.1| peptide chain release factor 2 [Gardnerella vaginalis 6119V5]
Length = 380
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIELGQEEG-DADSMSEAQDEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GSIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|309810763|ref|ZP_07704570.1| peptide chain release factor 2 [Dermacoccus sp. Ellin185]
gi|308435300|gb|EFP59125.1| peptide chain release factor 2 [Dermacoccus sp. Ellin185]
Length = 370
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEM--EAIDYGLFKRA 61
+LWDDP + K+ +L NA D R + +A + + L EM E D A
Sbjct: 43 DLWDDPDAAQ----KITSALSRANAEND-RVENMDAAIDDLEVLVEMGTEENDADTLAEA 97
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R + K + + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++
Sbjct: 98 ERELKKLQKAVGELEVRTLLNGEFDEREAVVTIRAGAGGVDAADFAEMLMRMYLRWAERH 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY +V+D + G+KS T E YAFG LS E G H L+ + + + A
Sbjct: 158 GYPTKVMDTSYAEEAGLKSVTFEVNVPYAFGNLSVEAGTHRLVRISPFDNQGRRQTSFAA 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+VVPL +ET+ ++I + +L +F S G+ + A + HIPTG V
Sbjct: 218 VEVVPL-IETTDTIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGTVV 270
>gi|254411738|ref|ZP_05025514.1| peptide chain release factor 2 [Coleofasciculus chthonoplastes PCC
7420]
gi|196181460|gb|EDX76448.1| peptide chain release factor 2 [Coleofasciculus chthonoplastes PCC
7420]
Length = 305
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 9/178 (5%)
Query: 64 ASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A +V KL LD++E+ +LL GP D GA + I AG+ G + WAE LL MY RWA+
Sbjct: 35 AQTNVVKLNRELDRWELEQLLSGPYDANGAVLAINAGAGGTDAQDWAEMLLRMYTRWAEN 94
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+GY+ ++ + G+KSAT+E + A+GYL E G H L+ N + + + A
Sbjct: 95 QGYKVQLAEFSEGDEAGIKSATLEIQGLRAYGYLKAEKGTHRLVRISPYNANGKRQTSFA 154
Query: 179 CVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
V+V+P+ E DL I + DL ++ G+ Q++ K A ++HIPT IAVR T
Sbjct: 155 GVEVMPILNE-DVDLDIPETDLEITTSRSGGKGGQNVNKVETAVRVKHIPTDIAVRCT 211
>gi|312879986|ref|ZP_07739786.1| bacterial peptide chain release factor 2 (bRF-2) [Aminomonas
paucivorans DSM 12260]
gi|310783277|gb|EFQ23675.1| bacterial peptide chain release factor 2 (bRF-2) [Aminomonas
paucivorans DSM 12260]
Length = 374
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 43 LIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGIC 102
L A LAE E +D L + YR + K L++ ++ LL D A VTI AG+ G+
Sbjct: 81 LAALLAEGEDVD--LEEEFYRRAGAFEKELERRQIFVLLDEEYDRSDAIVTIHAGAGGLD 138
Query: 103 PEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHC 162
+ W E L MY+RW +KEG++ R++D+ + G+KS T E +YA+GYL GE G H
Sbjct: 139 SQDWTEILSRMYLRWVEKEGFKSRILDQLADQEAGIKSITFEVLGDYAYGYLKGEKGVHR 198
Query: 163 LINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKP 217
L+ + + + A V+V+P+ E + D++I EDL F S G+ ++
Sbjct: 199 LVRISPFDAAKRRHTSFASVEVLPVLPEDA-DIEIRPEDLKMDTFRSSGAGGQYVNMTDS 257
Query: 218 AACIQHIPTGIAV-----------RGTTLQI 237
A I HIPTGI V R T LQ+
Sbjct: 258 AVRITHIPTGIIVSCQVERSQHMNRATALQV 288
>gi|420987725|ref|ZP_15450881.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0206]
gi|392182004|gb|EIV07655.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0206]
Length = 349
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + +V +L+ + + +++LR + ++ ++ +LAE E+ D + A
Sbjct: 25 NLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAE-ESEDNSVVAEADAER 83
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 84 VKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKYPV 143
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT +A+G LS E G H L+ F N S + + A V+V
Sbjct: 144 EVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFADVEV 202
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V
Sbjct: 203 LPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 252
>gi|116671212|ref|YP_832145.1| peptide chain release factor 2 [Arthrobacter sp. FB24]
gi|229576665|sp|A0JYC5.1|RF2_ARTS2 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|116611321|gb|ABK04045.1| bacterial peptide chain release factor 2 (bRF-2) [Arthrobacter sp.
FB24]
Length = 371
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 NLWDDPAAAQKITSRLSHRQSELERLNTLVSRIDDLEVLVELGQDED-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 ESIRKSLKDLEVVTLLSGEFDEREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT E YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TIMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D ++ +F S G+ + A + HIPTG V
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVV 271
>gi|383807635|ref|ZP_09963195.1| chain release factor 2 [Candidatus Aquiluna sp. IMCC13023]
gi|383298989|gb|EIC91604.1| chain release factor 2 [Candidatus Aquiluna sp. IMCC13023]
Length = 367
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N+WDD + V +L+ + + L+ L ++ K + EM D
Sbjct: 44 NIWDDQVNAQAVTTELSRTKAQLTQLEAL---GQDIKDLEAFKEMALEDKSAADEFALEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V+ LDQ E LL G D GA +++++G+ G +AE L+ MY+R+A+K G++
Sbjct: 101 ARVTSELDQLETQTLLNGEYDPRGAILSVRSGAGGDDATDFAEMLMRMYLRYAEKNGHKA 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V++ + G+KSAT+E +F YA+G LS E+G H L+ N + + + A ++VV
Sbjct: 161 KVLEISHSEGAGIKSATVEMDFPYAYGQLSIESGTHRLVRMSPFNAAGKRQTSFAAIEVV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ + + ++I D D+ +F S G+ + A I H PTGI V
Sbjct: 221 PV-MAVTESVEIPDSDIRIDVFRSSGPGGQSVNTTDSAVRITHTPTGIVV 269
>gi|145347488|ref|XP_001418196.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578425|gb|ABO96489.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 278
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
+ K LD +E+ +LL G D GA + I AG+ G+ + W E L MY+ W +K G+ R
Sbjct: 12 LDKALDAWELRRLLGGKYDAFGAVLQIYAGAGGLDAQDWTEMLERMYLGWCEKRGFAVRA 71
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
++ + GG+K+AT+E E YA+GYLS E G H L+ N + + A VDV+PL
Sbjct: 72 TERLEGEGGGLKTATLEVEGRYAYGYLSSEKGTHRLVRQSPFNKDAARQTSFAAVDVIPL 131
Query: 186 FLETSPD-LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
F E + +++ D DL S G+ + + A I+HIPTGI V+
Sbjct: 132 FEEDMEEVVKVPDTDLEVTTMRSGGAGGQNVNKVETAVRIKHIPTGITVK 181
>gi|169630559|ref|YP_001704208.1| peptide chain release factor 2 [Mycobacterium abscessus ATCC 19977]
gi|365871419|ref|ZP_09410960.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397680121|ref|YP_006521656.1| peptide chain release factor 2 [Mycobacterium massiliense str. GO
06]
gi|414582846|ref|ZP_11439986.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1215]
gi|418247354|ref|ZP_12873740.1| peptide chain release factor 2 [Mycobacterium abscessus 47J26]
gi|418421605|ref|ZP_12994778.1| peptide chain release factor 2 [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709229|ref|ZP_14236697.1| peptide chain release factor 2 [Mycobacterium abscessus M93]
gi|420864991|ref|ZP_15328380.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0303]
gi|420869781|ref|ZP_15333163.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RA]
gi|420874226|ref|ZP_15337602.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RB]
gi|420879297|ref|ZP_15342664.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0304]
gi|420886077|ref|ZP_15349437.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0421]
gi|420891332|ref|ZP_15354679.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0422]
gi|420896640|ref|ZP_15359979.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0708]
gi|420900397|ref|ZP_15363728.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0817]
gi|420906263|ref|ZP_15369581.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1212]
gi|420911108|ref|ZP_15374420.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-R]
gi|420917564|ref|ZP_15380867.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-S]
gi|420922727|ref|ZP_15386023.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-S]
gi|420928389|ref|ZP_15391669.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-1108]
gi|420932713|ref|ZP_15395988.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-151-0930]
gi|420936046|ref|ZP_15399315.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-152-0914]
gi|420942974|ref|ZP_15406230.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-153-0915]
gi|420948665|ref|ZP_15411915.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-154-0310]
gi|420953138|ref|ZP_15416380.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0626]
gi|420957312|ref|ZP_15420547.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0107]
gi|420962979|ref|ZP_15426203.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-1231]
gi|420967996|ref|ZP_15431200.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0810-R]
gi|420974564|ref|ZP_15437755.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0921]
gi|420978729|ref|ZP_15441906.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0212]
gi|420984113|ref|ZP_15447280.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-R]
gi|420993260|ref|ZP_15456406.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0307]
gi|420999033|ref|ZP_15462168.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-R]
gi|421003556|ref|ZP_15466678.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-S]
gi|421008640|ref|ZP_15471750.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0119-R]
gi|421014162|ref|ZP_15477239.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-R]
gi|421019027|ref|ZP_15482084.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-S]
gi|421025197|ref|ZP_15488241.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0731]
gi|421029899|ref|ZP_15492930.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-R]
gi|421035741|ref|ZP_15498759.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-S]
gi|421040259|ref|ZP_15503267.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-R]
gi|421044579|ref|ZP_15507579.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-S]
gi|421050503|ref|ZP_15513497.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|238688912|sp|B1MEU8.1|RF2_MYCA9 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|169242526|emb|CAM63554.1| Peptide chain release factor 2 (PrfB) [Mycobacterium abscessus]
gi|353451847|gb|EHC00241.1| peptide chain release factor 2 [Mycobacterium abscessus 47J26]
gi|363995222|gb|EHM16440.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363995521|gb|EHM16738.1| peptide chain release factor 2 [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943110|gb|EIC67424.1| peptide chain release factor 2 [Mycobacterium abscessus M93]
gi|392063707|gb|EIT89556.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0303]
gi|392065701|gb|EIT91549.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RB]
gi|392069251|gb|EIT95098.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0726-RA]
gi|392078592|gb|EIU04419.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0422]
gi|392081840|gb|EIU07666.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0421]
gi|392084206|gb|EIU10031.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0304]
gi|392095952|gb|EIU21747.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0708]
gi|392097758|gb|EIU23552.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0817]
gi|392104167|gb|EIU29953.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1212]
gi|392110455|gb|EIU36225.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-S]
gi|392113102|gb|EIU38871.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0125-R]
gi|392117998|gb|EIU43766.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-1215]
gi|392127380|gb|EIU53130.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-S]
gi|392129507|gb|EIU55254.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-1108]
gi|392137472|gb|EIU63209.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-151-0930]
gi|392141561|gb|EIU67286.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-152-0914]
gi|392148071|gb|EIU73789.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-153-0915]
gi|392152051|gb|EIU77758.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0626]
gi|392155695|gb|EIU81401.1| peptide chain release factor 2 [Mycobacterium massiliense
1S-154-0310]
gi|392162447|gb|EIU88137.1| peptide chain release factor 2 [Mycobacterium abscessus 5S-0921]
gi|392163007|gb|EIU88696.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0212]
gi|392169109|gb|EIU94787.1| peptide chain release factor 2 [Mycobacterium abscessus 6G-0728-R]
gi|392177815|gb|EIV03468.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-R]
gi|392179362|gb|EIV05014.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0307]
gi|392192259|gb|EIV17883.1| peptide chain release factor 2 [Mycobacterium massiliense
2B-0912-S]
gi|392196788|gb|EIV22404.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0119-R]
gi|392199851|gb|EIV25459.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-R]
gi|392207657|gb|EIV33234.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0122-S]
gi|392211994|gb|EIV37560.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0731]
gi|392221187|gb|EIV46710.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-R]
gi|392223119|gb|EIV48641.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-R]
gi|392224236|gb|EIV49757.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0930-S]
gi|392234032|gb|EIV59530.1| peptide chain release factor 2 [Mycobacterium abscessus 4S-0116-S]
gi|392239106|gb|EIV64599.1| peptide chain release factor 2 [Mycobacterium massiliense CCUG
48898]
gi|392245892|gb|EIV71369.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-1231]
gi|392250503|gb|EIV75977.1| peptide chain release factor 2 [Mycobacterium abscessus 3A-0810-R]
gi|392251143|gb|EIV76616.1| peptide chain release factor 2 [Mycobacterium massiliense 2B-0107]
gi|395458386|gb|AFN64049.1| Peptide chain release factor 2 [Mycobacterium massiliense str. GO
06]
Length = 367
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + +V +L+ + + +++LR + ++ ++ +LAE E+ D + A
Sbjct: 43 NLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAE-ESEDNSVVAEADAER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 102 VKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT +A+G LS E G H L+ F N S + + A V+V
Sbjct: 162 EVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFADVEV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V
Sbjct: 221 LPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|22298070|ref|NP_681317.1| peptide chain release factor 2 [Thermosynechococcus elongatus BP-1]
gi|22294248|dbj|BAC08079.1| peptide chain release factor 2 [Thermosynechococcus elongatus BP-1]
Length = 290
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
L+++E+ +LL GP D A VTI AG+ G + WAE LL MY RWA++ GY+ + +
Sbjct: 31 LNRWELEQLLSGPYDKNNAIVTINAGAGGTDAQDWAEMLLRMYTRWAERHGYQTHLAELS 90
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KSAT+E YA+GYL E G H L+ N + + + A VDV+P L+
Sbjct: 91 EGEEAGIKSATLEIRGRYAYGYLRSEKGTHRLVRISPFNANGKRQTSFAGVDVMP-ELDQ 149
Query: 190 SPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
S ++I + DL ++ G+ Q++ K A I H PTG+AVR T
Sbjct: 150 SVTVEIPESDLEITTSRSGGKGGQNVNKVETAVRIVHKPTGLAVRCT 196
>gi|213692886|ref|YP_002323472.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|384200108|ref|YP_005585851.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213524347|gb|ACJ53094.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320459060|dbj|BAJ69681.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 374
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 45 LWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGHEEG-DQDSLDEAQSEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 224 L-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|23465750|ref|NP_696353.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705]
gi|189439805|ref|YP_001954886.1| peptide chain release factor 2 [Bifidobacterium longum DJO10A]
gi|239622364|ref|ZP_04665395.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296453666|ref|YP_003660809.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum JDM301]
gi|312133211|ref|YP_004000550.1| prfb [Bifidobacterium longum subsp. longum BBMN68]
gi|322690619|ref|YP_004220189.1| peptide chain release factor [Bifidobacterium longum subsp. longum
JCM 1217]
gi|384202009|ref|YP_005587756.1| peptide chain release factor [Bifidobacterium longum subsp. longum
KACC 91563]
gi|419848678|ref|ZP_14371771.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 1-6B]
gi|419851231|ref|ZP_14374183.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 35B]
gi|419852838|ref|ZP_14375691.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 2-2B]
gi|419854346|ref|ZP_14377134.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 44B]
gi|23326435|gb|AAN24989.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705]
gi|189428240|gb|ACD98388.1| Protein chain release factor B [Bifidobacterium longum DJO10A]
gi|239514361|gb|EEQ54228.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291517272|emb|CBK70888.1| bacterial peptide chain release factor 2 (bRF-2) [Bifidobacterium
longum subsp. longum F8]
gi|296183097|gb|ADG99978.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum JDM301]
gi|311772412|gb|ADQ01900.1| PrfB [Bifidobacterium longum subsp. longum BBMN68]
gi|320455475|dbj|BAJ66097.1| peptide chain release factor [Bifidobacterium longum subsp. longum
JCM 1217]
gi|338755016|gb|AEI98005.1| peptide chain release factor [Bifidobacterium longum subsp. longum
KACC 91563]
gi|386406926|gb|EIJ21919.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 35B]
gi|386407211|gb|EIJ22191.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 1-6B]
gi|386409533|gb|EIJ24375.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 2-2B]
gi|386417686|gb|EIJ32158.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum 44B]
Length = 374
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 45 LWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGHEEG-DQDSLDEAQSEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 224 L-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|312135785|ref|YP_004003123.1| hypothetical protein Calow_1789 [Caldicellulosiruptor owensensis
OL]
gi|311775836|gb|ADQ05323.1| hypothetical protein Calow_1789 [Caldicellulosiruptor owensensis
OL]
Length = 372
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 7/232 (3%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + +
Sbjct: 43 NPDFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LEEGNHDMAEELEK 101
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY
Sbjct: 102 ELLDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGY 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D + G+K+ T+ E A+GYL E G H L+ + + + A V+
Sbjct: 162 KVETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVE 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P +E D++I +EDL F + G+ + + A I+HIPTGI V
Sbjct: 222 VLP-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVV 272
>gi|255323776|ref|ZP_05364902.1| peptide chain release factor 2 [Corynebacterium tuberculostearicum
SK141]
gi|255298956|gb|EET78247.1| peptide chain release factor 2 [Corynebacterium tuberculostearicum
SK141]
Length = 367
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + E+ ++ +LAE E D L
Sbjct: 43 SLWDDPAHAQKVTSELSAAQAKVRKLESLRGRLEDMPVMYELAEEEG-DTSLAD----DE 97
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 98 LDSLESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHK 157
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V
Sbjct: 158 VDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEV 217
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + + I D D+ ++ S G+ + A + HIPTGI V
Sbjct: 218 LPV-VEQTDHIDIPDNDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 267
>gi|350565918|ref|ZP_08934640.1| peptide chain release factor RF2 [Peptoniphilus indolicus ATCC
29427]
gi|348663296|gb|EGY79887.1| peptide chain release factor RF2 [Peptoniphilus indolicus ATCC
29427]
Length = 348
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 9/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ + +V+ +L V+ L K EEA + +L E+E D+ + +
Sbjct: 24 NFWDNSESAQKVIKELNHHQGKVDKYDKLSKKIEEANDLIELMELEE-DFTFYDEFKKDL 82
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K D++++ LL G D +TI AG+ G + WA LL MY R+A+ +G++
Sbjct: 83 EDIEKFADEFKLETLLNGEYDANDCILTIHAGAGGTEAQDWASMLLRMYTRYAESKGFKV 142
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++D G+KSAT+ + +GY+ GE G H L+ F + H + + VDV
Sbjct: 143 EILDIQKEDEAGIKSATLLISGDNGYGYMKGEKGVHRLVRISPFDSNKRRH-TSFSSVDV 201
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ + +++I EDL + S G+ + A I HIPTGI V+
Sbjct: 202 YPQ-IDGAVEVEIRAEDLKVDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 252
>gi|312140591|ref|YP_004007927.1| peptide chain release factor prfb [Rhodococcus equi 103S]
gi|325675787|ref|ZP_08155471.1| peptide chain release factor RF2 [Rhodococcus equi ATCC 33707]
gi|311889930|emb|CBH49247.1| peptide chain release factor PrfB [Rhodococcus equi 103S]
gi|325553758|gb|EGD23436.1| peptide chain release factor RF2 [Rhodococcus equi ATCC 33707]
Length = 367
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 8/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ + + +++LR + ++ ++ +LAE E + A RA L
Sbjct: 44 LWNDQEHAQQVTSQLSHAQSELRRVEELRSRLDDMAVLYELAEEEGPEAVADAHAERAQL 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ E+ +L G D A V I+AG+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 RTD--IEAMEVKTMLSGEYDQRDALVNIRAGAGGVDAADWAEMLMRMYIRWAEKRGYGVE 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V+P
Sbjct: 162 VYDTSYAEEAGIKSATFAVKAPYSYGTLSIEMGTHRLVRISPFDNQGRRQTSFAEVEVLP 221
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 222 V-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 269
>gi|322688633|ref|YP_004208367.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis 157F]
gi|320459969|dbj|BAJ70589.1| peptide chain release factor [Bifidobacterium longum subsp.
infantis 157F]
Length = 374
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 45 LWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGREEG-DQDSLDEAQSEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 224 L-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|415724069|ref|ZP_11469756.1| peptide chain release factor 2 [Gardnerella vaginalis 00703C2mash]
gi|388063003|gb|EIK85601.1| peptide chain release factor 2 [Gardnerella vaginalis 00703C2mash]
Length = 373
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V KL+ + + L+ + E+ K + +L + E D A
Sbjct: 44 GLWDDSEHAQQVTSKLSAAQSQLKRLQAVEQSIEDTKTLIELGQEEG-DADSMSEAQEEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 103 GAIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+
Sbjct: 163 KMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 223 PL-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|358447104|ref|ZP_09157638.1| peptide chain release factor 2 [Corynebacterium casei UCMA 3821]
gi|356606976|emb|CCE55993.1| peptide chain release factor 2 [Corynebacterium casei UCMA 3821]
Length = 367
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 10/230 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + E+ ++ +LAE E D L A
Sbjct: 43 SLWDDPNHAQKVTSELSATQGKLRKLTTLRGRLEDLPVMYELAEEEG-DASLADEELDA- 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V + ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 101 --VREAIESLEVTTMLSGEYDQREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DIYDVSYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRLSPFDNQNRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I D ++ ++ S G+ + A + H+PTGI V
Sbjct: 219 PV-VEQTDSIEIPDSEIRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 267
>gi|383820469|ref|ZP_09975725.1| peptide chain release factor 2 [Mycobacterium phlei RIVM601174]
gi|383334859|gb|EID13292.1| peptide chain release factor 2 [Mycobacterium phlei RIVM601174]
Length = 368
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD ++ +V L+ + + ++DLR + ++ ++ +LA E G A
Sbjct: 43 NLWDDQARAQKVTSDLSHAQGELRRVEDLRRRLDDLPVLYELAAEE----GGADELAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELKKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHN 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V+D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YSVEVLDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 218 VEVLPV-VETTDHIDIPETDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|300781771|ref|ZP_07091625.1| peptide chain release factor RF2 [Corynebacterium genitalium ATCC
33030]
gi|300533478|gb|EFK54539.1| peptide chain release factor RF2 [Corynebacterium genitalium ATCC
33030]
Length = 364
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 10/230 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V +L+ V ++ LR + ++ ++ +LA E DY L A
Sbjct: 43 SLWDDPEHAQSVTTELSSVQARVRRVRSLRQRIDDLPVMYELAAEEG-DYTL---AEDEL 98
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D++ ++ E++ +L G D A V I++G+ G+ WAE L+ MY+RWA+K G++
Sbjct: 99 ADLTTAVETLEVTTMLSGEYDQREAVVNIRSGAGGVDAADWAEMLMRMYIRWAEKNGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A I H PTGI V
Sbjct: 219 PV-VEKTDHIDIPDSEIRIDVYRSSGPGGQSVNTTDSAVRITHEPTGIVV 267
>gi|260584689|ref|ZP_05852435.1| peptide chain release factor 2 [Granulicatella elegans ATCC 700633]
gi|260157712|gb|EEW92782.1| peptide chain release factor 2 [Granulicatella elegans ATCC 700633]
Length = 331
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM---EAIDYGLFKRAYR 63
WDD K+ V+ K + V + L + EE +L+ ++ + E I L +R +
Sbjct: 6 FWDDNEKAQMVIQKSNELKAVYDTFHQLELQVEEVELLFEMYKEDPEEEIHDELVERVH- 64
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
V K L++YE+S LL GP+D A + I G+ G + W LL MY RWA++ GY
Sbjct: 65 ---SVEKELEKYELSMLLSGPHDKCSAILEIHPGAGGTESQDWGSMLLRMYTRWAEQHGY 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
R VD + G+KS T+ E A+GYL E G H L+ + + + +D
Sbjct: 122 RIETVDYQDGEEAGIKSVTLSIEGLNAYGYLKSEKGVHRLVRISPFDAAGKRHTSFCSID 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++P LE D++I+ +DL ++ + G+ + A I HIPTGI +
Sbjct: 182 IMPQ-LEGDIDIEINPDDLKIDVYRASGAGGQHINKTSSAVRITHIPTGIVTQ 233
>gi|386772748|ref|ZP_10095126.1| peptide chain release factor 2 [Brachybacterium paraconglomeratum
LC44]
Length = 371
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V L+ + + +L + E+ +++ +LA E D A
Sbjct: 44 DLWDDVENAQKVSSALSHAQSERRRISELASRIEDLEVMVELA-AEEDDPDTLAEAEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K LD+ E+ LL G D A +TI+AG+ G+ +AE L+ MY+RWA+ GY
Sbjct: 103 VSIHKTLDELEVRTLLSGEYDERDAVITIRAGAGGVDAADFAEMLMRMYLRWAENNGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 KVMDTSYAEEAGLKSVTFEVAGPFAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E++ ++I + DL +F S G+ + A + H+PTG V
Sbjct: 223 PL-IESTDHIEIPENDLKIDVFRSSGPGGQSVNTTDSAVRMTHLPTGTVV 271
>gi|318040666|ref|ZP_07972622.1| peptide chain release factor 2 [Synechococcus sp. CB0101]
Length = 356
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ + +L + + L + +A+ ++ +E D L + A
Sbjct: 26 DFWDDQKQAQAKMRQLDEVKAQLEQLSQWQGAVADAEATVEIYGLEP-DEELLSESNEAL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL GP D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 QKLRSDLDRWELERLLSGPYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P +E L I D+DL + S G+ + + A I HIPTG+ VR T
Sbjct: 205 PK-IEEEVKLDIPDKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCT 256
>gi|227546362|ref|ZP_03976411.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|317482557|ref|ZP_07941572.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA]
gi|227213343|gb|EEI81215.1| peptide chain release factor 2 [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|316915979|gb|EFV37386.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA]
Length = 374
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 45 LWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGHEEG-DQDSLDEAQGEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 224 L-VEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|415727369|ref|ZP_11471467.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Dmash]
gi|388062266|gb|EIK84884.1| peptide chain release factor 2 [Gardnerella vaginalis 00703Dmash]
Length = 380
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V KL+ + + L+ + + ++ K + +L + E D A
Sbjct: 45 LWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIDDTKTLIELGQEEG-DADSMSEAQDELG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 NIAHELDDMEVQTLLDGEYDARSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + + YA+G LS E G H ++ + + + V+V+P
Sbjct: 164 MMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVRISPFDNQGRRQTGFSAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ F + G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|336324934|ref|YP_004604900.1| peptide chain release factor RF-2 [Corynebacterium resistens DSM
45100]
gi|336100916|gb|AEI08736.1| peptide chain release factor RF-2 [Corynebacterium resistens DSM
45100]
Length = 378
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM----------EAIDY 55
+LWDDP + +V +L+ + +K LR + E+ ++ +AE EA++
Sbjct: 43 SLWDDPDHAQKVTSELSRVQGKLRKVKSLRQRLEDLPVMYDMAEEAAAEDPDTADEAMEM 102
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+RA ++ K ++ E++ +L G D A V I++G+ G+ WAE L+ MY
Sbjct: 103 ADEERA-----ELRKEIESLEVTTMLSGEYDQREAVVNIRSGAGGVDAADWAEMLMRMYT 157
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFP 172
RWA+K G++ + D + G+KSAT EY +G LS E GAH L+ F +G
Sbjct: 158 RWAEKSGHKVDIYDISYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRLSPFGSGGDK 217
Query: 173 HEATLACVDVVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGI 228
+ + A V+V+P+ +T PD ++ + ++ S G+ + A + HIPTGI
Sbjct: 218 RQTSFAEVEVLPVVEQTDHIDIPDAEVRVD--VYRSSGPGGQSVNTTDSAVRLTHIPTGI 275
Query: 229 AV 230
V
Sbjct: 276 VV 277
>gi|293189308|ref|ZP_06608031.1| peptide chain release factor 2 [Actinomyces odontolyticus F0309]
gi|399526715|ref|ZP_10766468.1| peptide chain release factor 2 [Actinomyces sp. ICM39]
gi|292821771|gb|EFF80707.1| peptide chain release factor 2 [Actinomyces odontolyticus F0309]
gi|398362731|gb|EJN46407.1| peptide chain release factor 2 [Actinomyces sp. ICM39]
Length = 373
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + +A E D G A A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVDMA-AEDPDEGADILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 ADLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 221 EVIPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|326491925|dbj|BAJ98187.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 465
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 8/228 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V + + + + ++ + E + +LA E D L + RA
Sbjct: 136 DLWEDPVFAGKVSREQGELMGKIKSVNQFEQQLMEHIDMLRLARDEG-DNELETESMRAL 194
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G+ WA ++NMY WA + GYR
Sbjct: 195 ADMRREAKEKELNALLSGDNDPYPCFIEVQAGAGGVESMDWAAMVMNMYKSWAQRRGYRV 254
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 255 TVIEEMPGELAGIKRATIKVDGEYAFGYAKSEIGVHRLVRISPFDSGKRRH-TSFAAVAV 313
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+P+ E+S QI++ DL F S G+ + + A I HIPTG
Sbjct: 314 IPILGESSSRYQINESDLRIERFRSGGPGGQHANTTESAVRIVHIPTG 361
>gi|261338116|ref|ZP_05966000.1| peptide chain release factor 2 [Bifidobacterium gallicum DSM 20093]
gi|270276738|gb|EFA22592.1| peptide chain release factor 2 [Bifidobacterium gallicum DSM 20093]
Length = 376
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 113/232 (48%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDDP + +V KL+ V + LK L A + L E+ E D A
Sbjct: 45 LWDDPEHAQKVTSKLS---AVQSQLKHLASAASRIDDVETLVELGREEADQDTLDEAQSE 101
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++ L E+ L+ G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 102 VESITNDLRDMEIQTLMDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+V
Sbjct: 162 AKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEV 221
Query: 183 VPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VPL T P+ +I + S P G+ + A I HIPTGI V
Sbjct: 222 VPLVEATDHIEVPESEIRVDTYCASGPG--GQGVNTTYSAVRITHIPTGIVV 271
>gi|405982168|ref|ZP_11040492.1| peptide chain release factor 2 [Actinomyces neuii BVS029A5]
gi|404390959|gb|EJZ86025.1| peptide chain release factor 2 [Actinomyces neuii BVS029A5]
Length = 377
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 26/241 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-----------AQLAEMEAID 54
+LWDD K+ V KL+ + + ++ + ++ E+ + + QL EA
Sbjct: 49 DLWDDQEKAQAVTSKLSHAQSELERVQKMEHRLEDTQAMFELAEESEGEERQLLHEEA-- 106
Query: 55 YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
+A A+LD K L + E+ L+ G D A VTI++G+ G+ +A+ LL MY
Sbjct: 107 -----QADLAALD--KDLSELEIRTLMSGEYDERSAVVTIRSGAGGVDAADFAQMLLRMY 159
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
RWA++ GY +V+D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 160 TRWAERHGYSYKVMDTSYAEEAGIKSATFQVNEPYAYGRLSVEGGTHRLVRISPFDNQGR 219
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + A V+V+PL +E++ + I D DL +F S G+ + A + H+PTGI
Sbjct: 220 RQTSFAAVEVIPL-IESTDHIDIPDSDLKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIV 278
Query: 230 V 230
V
Sbjct: 279 V 279
>gi|373253623|ref|ZP_09541741.1| peptide chain release factor 2 [Nesterenkonia sp. F]
Length = 372
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ +N L L + ++ + + ++ + E D + A
Sbjct: 44 DLWNDQEHAQKVTSQLSHKQAELNRLTKLESRIDDVETMVEMGQEEG-DAATLQEARDEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK L+ E+ LL G D A VTI+AG+ GI +AE LL MY RWAD +
Sbjct: 103 SAISKDLESLEIVTLLSGEYDERDAVVTIRAGAGGIDAADFAEMLLRMYTRWADHRNWDV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KSAT E + YAFG +S E G H L+ + + + A V+V+
Sbjct: 163 KILDTSYAEEAGLKSATFEVKAPYAFGTMSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + +L ++ S G+ + A I H+PTG V
Sbjct: 223 PL-IEGTDHVEIDENELKIDVYRSSGPGGQSVNTTDSAVRITHLPTGTVV 271
>gi|113475767|ref|YP_721828.1| peptide chain release factor 2 [Trichodesmium erythraeum IMS101]
gi|110166815|gb|ABG51355.1| bacterial peptide chain release factor 2 (bRF-2) [Trichodesmium
erythraeum IMS101]
Length = 288
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 104/185 (56%), Gaps = 6/185 (3%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L A ++++ LDQ+E+ +LL G D GA VTI AG+ G + WAE LL M
Sbjct: 6 DESLLAEANLTIANLNQELDQWELQQLLSGLYDQNGAVVTINAGAGGTDAQDWAEMLLRM 65
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y RW ++ Y+ ++ + G+KSAT+E YA+GYL E G H L+ N +
Sbjct: 66 YTRWGEEHKYKVQLAEISEGDEAGLKSATLEIIGRYAYGYLKAEKGTHRLVRISPFNANG 125
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGI 228
+ + A V+V+P+ L+ S +L I ++DL ++ G+ Q++ K ++ HIPTG+
Sbjct: 126 KRQTSFAGVEVMPI-LDHSVELDIPEKDLEITTSRSGGKGGQNVNKVETAVRVVHIPTGL 184
Query: 229 AVRGT 233
+VR T
Sbjct: 185 SVRCT 189
>gi|154507630|ref|ZP_02043272.1| hypothetical protein ACTODO_00111 [Actinomyces odontolyticus ATCC
17982]
gi|153797264|gb|EDN79684.1| peptide chain release factor 2 [Actinomyces odontolyticus ATCC
17982]
Length = 373
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP+ + V L+ ++ + + + ++ + + +A E D G A A
Sbjct: 43 DLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVDMA-AEDPDEGADILA-EAE 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ KL L E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ G
Sbjct: 101 ADLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V+D + G+KSAT E + YA+G LS E G H L+ + + + A V
Sbjct: 161 YPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+PL +ET+ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 221 EVIPL-IETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|354613403|ref|ZP_09031324.1| Peptide chain release factor 2 [Saccharomonospora paurometabolica
YIM 90007]
gi|353222233|gb|EHB86550.1| Peptide chain release factor 2 [Saccharomonospora paurometabolica
YIM 90007]
Length = 368
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + + DLR + + ++ +LA E D A
Sbjct: 43 DLWNDPDAAQKVTSRLSHQQGALRKVTDLRQRVNDLSVLHELAVAEG-DAASRAEADTEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++++ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AELTREIDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
R+ D + G++SAT + E YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 RIYDISYAEEAGIRSATFKVEASYAYGTLSVEQGTHRLVRISPFDNQNRRQTSFAHVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E ++I ++D+ ++ S G+ + A I H+PTG+ V
Sbjct: 222 PEVAEVD-HVEIPEKDIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGVVV 270
>gi|427704047|ref|YP_007047269.1| peptide chain release factor 2 [Cyanobium gracile PCC 6307]
gi|427347215|gb|AFY29928.1| peptide chain release factor 2 [Cyanobium gracile PCC 6307]
Length = 355
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ + + +L + + L+ + ++A+ +L ++E D L A
Sbjct: 27 FWDDQQQAQKQMRQLDEVKAQLEQLQQWQAAIDDARATLELYDLEP-DEELLGEANGGLQ 85
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL GP D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 86 SLKGALDRWELERLLSGPYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKVT 145
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V + + G+KS TIE + YA+GYL E G H L+ N + + + A V+V+P
Sbjct: 146 VDELSEGEEAGIKSCTIEIDGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVMP 205
Query: 185 LFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
LE L I ++DL + S G+ + + A I HIPTG+AVR T
Sbjct: 206 -KLEEEVKLDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 256
>gi|320095989|ref|ZP_08027602.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977060|gb|EFW08790.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 178
str. F0338]
Length = 372
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ EV L+ ++ + + + ++ + + ++A + + A
Sbjct: 43 DLWDDPARAQEVTSALSHRQSELDRVVRMGERIDDLEAMVEMAGEDPDEAEEILDEAAAD 102
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K + E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LDTLKKDVSDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHGYA 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +E++ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 223 IPL-IESTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|227505562|ref|ZP_03935611.1| peptide chain release factor 2 [Corynebacterium striatum ATCC 6940]
gi|227197859|gb|EEI77907.1| peptide chain release factor 2 [Corynebacterium striatum ATCC 6940]
Length = 370
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V L+ + + L+ LR + ++ ++ +LAE E D L
Sbjct: 43 SLWDDPAHAQQVTSALSAAQAKIRKLESLRSRVDDMPVMFELAEEEG-DTALADDELE-- 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 -DLGAAIEALEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + + D D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 PV-VEQTDHIDVPDGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 267
>gi|212716462|ref|ZP_03324590.1| hypothetical protein BIFCAT_01386 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660715|gb|EEB21290.1| hypothetical protein BIFCAT_01386 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 376
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 113/232 (48%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDDP + +V KL+ V + LK L ++ + L E+ E D A
Sbjct: 45 LWDDPENAQKVTSKLS---AVQSQLKRLSSASQRIDDVETLVELGQEEDDADTLAEARSE 101
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ L E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+
Sbjct: 102 VESIQNDLADMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+V
Sbjct: 162 AKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVEV 221
Query: 183 VPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VPL T PD +I + S P G+ + A I HIPTGI V
Sbjct: 222 VPLVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVV 271
>gi|296118845|ref|ZP_06837421.1| peptide chain release factor 2 [Corynebacterium ammoniagenes DSM
20306]
gi|295968334|gb|EFG81583.1| peptide chain release factor 2 [Corynebacterium ammoniagenes DSM
20306]
Length = 367
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 10/230 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + E+ ++ +LAE E D L A
Sbjct: 43 SLWDDPDHAQKVTSELSSTQAKLRKLSALRGRLEDLPVMYELAEEEG-DASLADDELDAV 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + L E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 102 RDAVETL---EVTTMLSGDYDQREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DVYDISYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRLSPFDNQNRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I D ++ ++ S G+ + A + H+PTGI V
Sbjct: 219 PV-VEQTDSIEIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIMV 267
>gi|282882039|ref|ZP_06290680.1| peptide chain release factor 2 [Peptoniphilus lacrimalis 315-B]
gi|300814941|ref|ZP_07095169.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|281298069|gb|EFA90524.1| peptide chain release factor 2 [Peptoniphilus lacrimalis 315-B]
gi|300510911|gb|EFK38183.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 370
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD K+ +++ +L + VN ++ E+A I L EME DY + +
Sbjct: 46 NFWDDNEKAQKIIKELNSYQRKVNPYDEISDLIEDANDILLLMEMED-DYSSYDEFKKLI 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L++ K + +Y++ LL G D A ++I AG+ G + WA LL MYVR+A +G++
Sbjct: 105 LNIEKKVSEYKLETLLNGEFDENDAILSIHAGAGGTEAQDWASMLLRMYVRYATNKGFKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KS T++ E+A+G+L GE G H L+ + + + + VDV
Sbjct: 165 ETLDILKEDEAGIKSVTLKISGEHAYGFLKGEKGVHRLVRISPFDANKRRHTSFSSVDVF 224
Query: 184 P------LFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P DL+I + S G+ + A I HIPTGI V+
Sbjct: 225 PDIDGDIDIEIKDEDLKID----TYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 274
>gi|294786673|ref|ZP_06751927.1| peptide chain release factor 2 [Parascardovia denticolens F0305]
gi|420237326|ref|ZP_14741797.1| peptide chain release factor 2 [Parascardovia denticolens IPLA
20019]
gi|294485506|gb|EFG33140.1| peptide chain release factor 2 [Parascardovia denticolens F0305]
gi|391879597|gb|EIT88103.1| peptide chain release factor 2 [Parascardovia denticolens IPLA
20019]
Length = 377
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + V L+ S L + + ++ + L ME D + A+
Sbjct: 45 LWDDPETAQRVTSNLSASQAEYKRLTEAGQRLDDIDTLYSLG-MEEEDEDSKQEAWSELK 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK L E+ LL G D A VTI++G+ G+ WA+ L+ MY+RWA++ Y+ +
Sbjct: 104 KLSKDLSDIEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYIRWAERHQYKVQ 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+KSAT + YA+G LS E G H L+ F N S + + A V+V+
Sbjct: 164 VIDTSYAEEAGIKSATFRVDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + + D D+ + S G+ + A + H+PTGI V
Sbjct: 223 PL-VEPTDHIDVPDSDVRVDTYMSHGPGGQGVNTTYSAVRLTHLPTGIVV 271
>gi|163846312|ref|YP_001634356.1| peptide chain release factor 2 [Chloroflexus aurantiacus J-10-fl]
gi|222524073|ref|YP_002568544.1| peptide chain release factor 2 [Chloroflexus sp. Y-400-fl]
gi|163667601|gb|ABY33967.1| peptide chain release factor 2 [Chloroflexus aurantiacus J-10-fl]
gi|222447952|gb|ACM52218.1| peptide chain release factor 2 [Chloroflexus sp. Y-400-fl]
Length = 313
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 7/208 (3%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
V A DL + A + +LAE+E D L + + + Q E+ LL GP D
Sbjct: 11 VTAWNDLERRIASAAELIELAELEG-DESLTADLAAEVQAIQREVAQRELEILLSGPYDD 69
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
A ++++AG G + WA LL MY RWA++ GY ++D + G+KSATIE
Sbjct: 70 RDAFLSVQAGMGGTDAQDWAAMLLRMYTRWAERRGYTVNLIDMSEGEEAGIKSATIEIRG 129
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LF 202
YA+GY E G H LI N + + + A V+V+P ++ +P+++I EDL +F
Sbjct: 130 PYAYGYARAEAGVHRLIRLSPFNAAHTRQTSFARVEVMP-EVDDAPEVEIKPEDLRIDVF 188
Query: 203 SSPSLPGERQSIAKPAACIQHIPTGIAV 230
S G+ + A I H+PTGI V
Sbjct: 189 RSGGHGGQGVNTTDSAVRITHLPTGIVV 216
>gi|339478754|gb|ABE95212.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium
breve UCC2003]
Length = 374
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + ++ KL+ + + L + ++ + + +L + E D A
Sbjct: 45 LWDNPDNAQKITSKLSTAESQLKRLTSASQRIDDVETLVELGQEEQ-DQESLDEAQNEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 224 L-VEATDHVDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|424851867|ref|ZP_18276264.1| peptide chain release factor 2 [Rhodococcus opacus PD630]
gi|356666532|gb|EHI46603.1| peptide chain release factor 2 [Rhodococcus opacus PD630]
Length = 371
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 47 LWNDQEHAQQVTSQLSHSQAELRRVEELRSRLDDMPVLYELAEDEGAEAIADADAERHSL 106
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 107 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 163 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 223 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 272
>gi|255528153|ref|ZP_05394980.1| peptide chain release factor 2 [Clostridium carboxidivorans P7]
gi|255508166|gb|EET84579.1| peptide chain release factor 2 [Clostridium carboxidivorans P7]
Length = 326
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W+D K+ E+ + ++ K+L K ++A+ + +LA +E D K R
Sbjct: 5 NFWNDTDKAQEITSEERFLKSRLDKYKELETKIQDAEFLTKLA-IEENDLSSSKDIIREV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +++ + LL G D A + I G G + W E LL MY RWA+K+G++
Sbjct: 64 EEIDNETERFRIEILLSGEYDKNNAIMDIHVGVGGTDAQDWTEMLLRMYTRWAEKKGFKI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD ++ G+KSAT+ E+A+GYL E G H L+ N + + + A ++V+
Sbjct: 124 ETVDILPAEDAGIKSATLRIIGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASIEVL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L + D+ I +D+ + S G+ + + A I HIPTGI V+
Sbjct: 184 PE-LTNNQDIDIKPDDIKVDTYRSSGAGGQHVNKTESAIRITHIPTGIVVQ 233
>gi|294790676|ref|ZP_06755834.1| peptide chain release factor 2 [Scardovia inopinata F0304]
gi|294458573|gb|EFG26926.1| peptide chain release factor 2 [Scardovia inopinata F0304]
Length = 370
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYRA 64
LWDD + V +L+ + L DL + ++ IA L E+ E D A +
Sbjct: 45 LWDDQENAQLVTSRLSQTQNEAKRLDDLERRLDD---IATLYELGSEEDDQDSKAEAEKE 101
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
V L E+ LL G D A VTI++G+ G+ WA+ L+ MY+RWA++ Y+
Sbjct: 102 LTAVRSDLSDLEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYLRWAERHHYK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++D + G+KSAT E + YA+G LS E G H L+ F N S + + A V+
Sbjct: 162 VQIMDTSYAEEAGIKSATFEVDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVE 220
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E + + I D D+ + S G+ + A I HIPTGI V
Sbjct: 221 VIPL-VEPTDHIDIPDSDIRVDTYMSHGPGGQGVNTTYSAVRITHIPTGIVV 271
>gi|432343023|ref|ZP_19592235.1| peptide chain release factor 2 [Rhodococcus wratislaviensis IFP
2016]
gi|430771944|gb|ELB87760.1| peptide chain release factor 2 [Rhodococcus wratislaviensis IFP
2016]
Length = 368
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRSRLDDMPVLYELAEDEGAEAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|429757605|ref|ZP_19290137.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 181 str.
F0379]
gi|429174743|gb|EKY16212.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 181 str.
F0379]
Length = 375
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 19/239 (7%)
Query: 6 NLWDDPTKSNEVLVKLADS-------LKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
+LWDDP + EV +L+ L + + DL + A+ A+ +A D
Sbjct: 43 DLWDDPAHAQEVTSQLSHRQSELDRVLAMEERIDDLEAIVDMARETAESDPADAEDIFAE 102
Query: 59 KRAYRASL--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+ ASL D+S L E+ LL G D A +TI++G+ G+ +AE LL MY+R
Sbjct: 103 AESDLASLKDDMSAL----EIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLR 158
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHE 174
WA++ GY +V+D + G+KSAT E + YA+G LS E G H L+ + +
Sbjct: 159 WAERHGYPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQ 218
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V+V+PL +E++ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 219 TSFAAVEVIPL-IESTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 276
>gi|347542944|ref|YP_004857581.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985980|dbj|BAK81655.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 327
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 122/241 (50%), Gaps = 17/241 (7%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLK-----VVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
M+ + WDD S ++ VKLA SLK V KD Y E ++I ++ E I
Sbjct: 1 MMEDSKFWDDIENSTKI-VKLAKSLKDKIDEVDKLYKDYEYLVESLEIIKDESDEEYIQ- 58
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+FK + +V +D + LL G D +TI AG+ G+ + W++ L MY+
Sbjct: 59 -MFKDDFYKFKNV---IDTLNIKTLLNGEYDKNNVFLTIHAGAGGVDAQDWSDMLFRMYM 114
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RW ++ + V+D G+KSATI+ E EYA+GYL GE G H L+ N +
Sbjct: 115 RWGEENKFALSVIDYSIGDEAGIKSATIKIEGEYAYGYLKGEKGIHRLVRISPFNANGKR 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+++P ++ +++I++ +L + + G+ + + A I H+ TGI V
Sbjct: 175 QTSFASVEILPE-IQNLEEIKINESELKIDTYRASGAGGQHVNKTESAVRITHLKTGIVV 233
Query: 231 R 231
+
Sbjct: 234 Q 234
>gi|295697362|ref|YP_003590600.1| hypothetical protein [Kyrpidia tusciae DSM 2912]
gi|295412964|gb|ADG07456.1| hypothetical protein Btus_2812 [Kyrpidia tusciae DSM 2912]
Length = 382
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + +V+ ++ VV ++ LR + E+ +++ +L E D +
Sbjct: 46 DFWDDQEGAQKVIAEVNRLKDVVERVEGLRSRVEDLEVLWELGHEEG-DETVLGEIEAGI 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V L Q+E+ +L GP D A V + G+ G + W LL MY RWA+ GY+
Sbjct: 105 TQVHSQLGQFELELMLSGPYDRNNAIVELHPGAGGTESQDWTAMLLRMYTRWAESRGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + GVKS T+ + A+GYL E G H L+ + S + A VDV+
Sbjct: 165 ETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAERGVHRLVRISPFDASGRRHTSFASVDVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P L+ S D+ I EDL + S G+ + A I HIPTGI V
Sbjct: 225 P-ELDESVDVDIRPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVV 273
>gi|291456213|ref|ZP_06595603.1| peptide chain release factor 2 [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|384197445|ref|YP_005583189.1| peptide chain release factor 2 [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|417942798|ref|ZP_12586060.1| Peptide chain release factor 2 [Bifidobacterium breve CECT 7263]
gi|291381490|gb|EFE89008.1| peptide chain release factor 2 [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|333110998|gb|AEF28014.1| peptide chain release factor 2 [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|376166517|gb|EHS85418.1| Peptide chain release factor 2 [Bifidobacterium breve CECT 7263]
Length = 374
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + ++ KL+ + + L + ++ + + +L + E D A
Sbjct: 45 LWDNPDNAQKITSKLSAAESQLKRLTSASQRIDDVETLVELGQEEQ-DQESLDEAQNEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTGI V
Sbjct: 224 L-VEATDHVDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGIVV 271
>gi|315226283|ref|ZP_07868071.1| peptide chain release factor RF2 [Parascardovia denticolens DSM
10105 = JCM 12538]
gi|315120415|gb|EFT83547.1| peptide chain release factor RF2 [Parascardovia denticolens DSM
10105 = JCM 12538]
Length = 396
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + V L+ S L + + ++ + L ME D + A+
Sbjct: 64 LWDDPETAQRVTSNLSASQAEYKRLTEAGQRLDDIDTLYSLG-MEEEDEDSKQEAWSELK 122
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK L E+ LL G D A VTI++G+ G+ WA+ L+ MY+RWA++ Y+ +
Sbjct: 123 KLSKDLSDIEIQTLLDGEYDNRAAVVTIRSGAGGVDAADWAQMLMRMYIRWAERHQYKVQ 182
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+KSAT + YA+G LS E G H L+ F N S + + A V+V+
Sbjct: 183 VIDTSYAEEAGIKSATFRVDAPYAYGKLSVEGGTHRLVRISPFDNNS-RRQTSFAAVEVI 241
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + + D D+ + S G+ + A + H+PTGI V
Sbjct: 242 PL-VEPTDHIDVPDSDVRVDTYMSHGPGGQGVNTTYSAVRLTHLPTGIVV 290
>gi|359778302|ref|ZP_09281571.1| peptide chain release factor 2 [Arthrobacter globiformis NBRC
12137]
gi|359304219|dbj|GAB15400.1| peptide chain release factor 2 [Arthrobacter globiformis NBRC
12137]
Length = 359
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + + +L+ + L L + ++ +++ +L + E D A
Sbjct: 32 DLWDDPAAAQVITSRLSHRQSELERLNTLASRIDDLEVLVELGQDED-DADSMGEAEAEL 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 91 ESIRKSLKDLEVVTLLSGEYDEREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYPT 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E YAFG LS E G H L+ + + + A V+V+
Sbjct: 151 TVMDTSYAEEAGLKSATFEVNAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 210
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D ++ +F S G+ + A + HIPTG V
Sbjct: 211 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVV 259
>gi|226528475|ref|NP_001148129.1| peptide chain release factor 2 [Zea mays]
gi|195616002|gb|ACG29831.1| peptide chain release factor 2 [Zea mays]
Length = 467
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ + E + +LA E D L + +A
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLAREEN-DNELEMESMKAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY+
Sbjct: 197 ADMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYRSWAQRRGYKI 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMSGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+P+ +T+ QI D DL F S G+ + + A I HIPTGI+
Sbjct: 316 IPILGDTTSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGIS 365
>gi|111023366|ref|YP_706338.1| peptide chain release factor 2 [Rhodococcus jostii RHA1]
gi|397736801|ref|ZP_10503479.1| peptide chain release factor 2 [Rhodococcus sp. JVH1]
gi|123339715|sp|Q0S2Q6.1|RF2_RHOSR RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|110822896|gb|ABG98180.1| peptide chain release factor RF2 [Rhodococcus jostii RHA1]
gi|396927382|gb|EJI94613.1| peptide chain release factor 2 [Rhodococcus sp. JVH1]
Length = 368
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E D A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGADAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|414076417|ref|YP_006995735.1| peptide chain release factor 2 [Anabaena sp. 90]
gi|413969833|gb|AFW93922.1| peptide chain release factor 2 [Anabaena sp. 90]
Length = 315
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 7/200 (3%)
Query: 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
++ +++ +L E+E D L + A ++ LDQ+E+ +LL G D +GA +TI AG+
Sbjct: 22 DDTRVVVELLELET-DTALLEEAESTISKLNHDLDQWELQQLLSGTYDDKGAVLTINAGA 80
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G + WA L+ MY RWA+ Y+ + ++ + G+KS T+E YA+GYL E
Sbjct: 81 GGTDAQDWAFMLMRMYTRWAEDHSYKVTLAEESKGEEAGIKSVTLEITGRYAYGYLRSEM 140
Query: 159 GAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIA 215
G H L+ N + + + A ++V+P ++ + L I ++DL S+ G+ Q++
Sbjct: 141 GTHRLVRISPFNANGKRQTSFAGIEVMPQ-IDNTVKLDIPEKDLDISTTRSGGKGGQNVN 199
Query: 216 K--PAACIQHIPTGIAVRGT 233
K A I H+PTG+AVR T
Sbjct: 200 KVETAVRIVHLPTGLAVRCT 219
>gi|219887937|gb|ACL54343.1| unknown [Zea mays]
gi|413939254|gb|AFW73805.1| hypothetical protein ZEAMMB73_768662 [Zea mays]
Length = 467
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ + E + +LA E D L + +A
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLAREEN-DNELEMESMKAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY+
Sbjct: 197 ADMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYRSWAQRRGYKI 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMSGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+P+ +T+ QI D DL F S G+ + + A I HIPTGI+
Sbjct: 316 IPILGDTTSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGIS 365
>gi|302865524|ref|YP_003834161.1| peptide chain release factor 2 [Micromonospora aurantiaca ATCC
27029]
gi|315502072|ref|YP_004080959.1| peptide chain release factor 2 [Micromonospora sp. L5]
gi|302568383|gb|ADL44585.1| peptide chain release factor 2 [Micromonospora aurantiaca ATCC
27029]
gi|315408691|gb|ADU06808.1| peptide chain release factor 2 [Micromonospora sp. L5]
Length = 373
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V +L+ + L DLR + ++A ++ +LA+ E D G
Sbjct: 44 DLWDDQAKAQQVTSQLSYVNGEITKLGDLRSRLDDAGVLLELAQAED-DPGALTEVESEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLTKAIQEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E + + I + ++ ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-TEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 271
>gi|226365870|ref|YP_002783653.1| peptide chain release factor 2 [Rhodococcus opacus B4]
gi|254790919|sp|C1B1L3.1|RF2_RHOOB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226244360|dbj|BAH54708.1| peptide chain release factor 2 [Rhodococcus opacus B4]
Length = 368
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGAEAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYIRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|302872499|ref|YP_003841135.1| hypothetical protein COB47_1880 [Caldicellulosiruptor obsidiansis
OB47]
gi|302575358|gb|ADL43149.1| hypothetical protein COB47_1880 [Caldicellulosiruptor obsidiansis
OB47]
Length = 372
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + +
Sbjct: 43 NPDFWQDLENSQKVLQKIKRLKDKIERFQKLCSQWEDLKVLTELS-IEEGNHEMAEELEK 101
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD+ K ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY
Sbjct: 102 ELLDLEKKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGY 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D + G+K+ TI E A+GYL E G H L+ + + + A V+
Sbjct: 162 KVETLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVE 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P +E D++I +EDL F + G+ + + A I+HIPTGI V
Sbjct: 222 VLP-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVV 272
>gi|441206141|ref|ZP_20972932.1| peptide chain release factor 2 [Mycobacterium smegmatis MKD8]
gi|440628689|gb|ELQ90485.1| peptide chain release factor 2 [Mycobacterium smegmatis MKD8]
Length = 368
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V L+ + + ++ LR + ++ ++ +LA + G A
Sbjct: 43 NLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYELA----AEAGGPDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELAKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y + D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V
Sbjct: 218 VEVLPV-VETTDHIDIPENDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|118473158|ref|YP_886446.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
gi|399986457|ref|YP_006566806.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
gi|166225108|sp|A0QU58.1|RF2_MYCS2 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|118174445|gb|ABK75341.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
gi|399231018|gb|AFP38511.1| Peptide chain release factor 2 [Mycobacterium smegmatis str. MC2
155]
Length = 368
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V L+ + + ++ LR + ++ ++ +LA + G A
Sbjct: 43 NLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYELA----AEAGGPDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELAKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y + D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ ++I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 218 VEVLPV-VETTDHIEIPENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|258651861|ref|YP_003201017.1| peptide chain release factor 2 [Nakamurella multipartita DSM 44233]
gi|258555086|gb|ACV78028.1| peptide chain release factor 2 [Nakamurella multipartita DSM 44233]
Length = 369
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + +KDLR + ++ +++ +L + D + A +
Sbjct: 43 DLWNDQENAQKVTSRLSHAQAELKRIKDLRQRLDDLEVLFELGDE---DPDTYLEAQQEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + K +D E+ LL G D A VTI++ + G+ +AE L+ MY+RW+++ GY
Sbjct: 100 LGLQKEIDAQEVRTLLSGEYDEREALVTIRSEAGGVDAADFAEMLMRMYLRWSERHGYNT 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KS T + + YA+G LS E G H L+ + + + A V+V
Sbjct: 160 EVYDTSYAEEAGIKSTTFQVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVA 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +ETS + + ++DL ++ S G+ + A I H+PTGI V
Sbjct: 220 PV-VETSDHVDVDEKDLRVDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 268
>gi|384101336|ref|ZP_10002375.1| peptide chain release factor 2 [Rhodococcus imtechensis RKJ300]
gi|419964746|ref|ZP_14480699.1| peptide chain release factor 2 [Rhodococcus opacus M213]
gi|383840890|gb|EID80185.1| peptide chain release factor 2 [Rhodococcus imtechensis RKJ300]
gi|414569858|gb|EKT80598.1| peptide chain release factor 2 [Rhodococcus opacus M213]
Length = 368
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRSRLDDMPVLYELAEDEGAEAIADVDAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|312126885|ref|YP_003991759.1| hypothetical protein Calhy_0649 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776904|gb|ADQ06390.1| hypothetical protein Calhy_0649 [Caldicellulosiruptor
hydrothermalis 108]
Length = 370
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D S +VL K+ + + L + E+ K++ +L+ +E ++ + + +
Sbjct: 43 DFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LEEGNHEMAEELEKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 102 LDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+K+ T+ E A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E D++I +EDL F + G+ + + A I+HIPTGI V
Sbjct: 222 P-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVV 270
>gi|342732927|ref|YP_004771766.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456295|ref|YP_005668892.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417962232|ref|ZP_12604484.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-2]
gi|417964130|ref|ZP_12605901.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-3]
gi|417964940|ref|ZP_12606573.1| Peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-4]
gi|417966272|ref|ZP_12607665.1| Putative peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-5]
gi|417969365|ref|ZP_12610306.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-co]
gi|418015665|ref|ZP_12655230.1| peptide chain release factor RF2 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373178|ref|ZP_12965269.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330382|dbj|BAK57024.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506000|gb|EGX28294.1| peptide chain release factor RF2 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984640|dbj|BAK80316.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380330419|gb|EIA21694.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-3]
gi|380330768|gb|EIA21943.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-2]
gi|380338028|gb|EIA26981.1| peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-co]
gi|380339441|gb|EIA28178.1| Peptide chain release factor 2 [Candidatus Arthromitus sp. SFB-4]
gi|380341567|gb|EIA30041.1| peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380343212|gb|EIA31617.1| Putative peptide chain release factor 2 [Candidatus Arthromitus sp.
SFB-5]
Length = 331
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 17/241 (7%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLK-----VVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
M+ + WDD S + V+++ SLK V N KD Y E +LI + E I
Sbjct: 1 MMEDTKFWDDVENSTRI-VRISKSLKDRIDEVNNLSKDYEYLLESLELIKDDNDEEYI-- 57
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+FK + D L+D + +L G D A +TI AG+ G+ + W+E L MY+
Sbjct: 58 KIFKDDFYKFKD---LIDNLSIRTILNGEYDKNNAFLTIHAGAGGVDAQDWSEMLFRMYM 114
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RW ++ + V++ G+KSATI+ E EYA+GY+ GE G H L+ N +
Sbjct: 115 RWGEENKFTLNVIEYTIGDEAGIKSATIKIEGEYAYGYMKGERGIHRLVRISPFNANGKR 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+++P ++ +++I++ +L + + G+ + + A I H+ TGI V
Sbjct: 175 QTSFASVEILPE-IQNIKEVKINESELKIDTYRASGAGGQHVNKTESAVRITHLKTGIVV 233
Query: 231 R 231
+
Sbjct: 234 Q 234
>gi|403739010|ref|ZP_10951611.1| peptide chain release factor 2 [Austwickia chelonae NBRC 105200]
gi|403191660|dbj|GAB78381.1| peptide chain release factor 2 [Austwickia chelonae NBRC 105200]
Length = 383
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L+ + + ++ + + E+ +++ ++A + D A
Sbjct: 53 DLWDDQENAQAVTSRLSRANAELERIEGMDSRIEDLEVLVEMATEDGGDAETLAEAEDEL 112
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K + + E+ LL G D A VTI++G+ G+ +AE L+ MY+RWA++ GY
Sbjct: 113 ASLRKAVGELEVRTLLNGEYDEREAVVTIRSGAGGVDAADFAEMLMRMYLRWAERHGYPT 172
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YA+G L+ E G H L+ + + + A V+V+
Sbjct: 173 AVLDTSYAEEAGLKSATFEVKVPYAYGNLAVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 232
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E++ + I + +L +F S G+ + A + HIPTGI V
Sbjct: 233 PL-IESTDTIDIPESELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 281
>gi|392963551|ref|ZP_10328977.1| Peptide chain release factor 2 [Pelosinus fermentans DSM 17108]
gi|421077424|ref|ZP_15538395.1| Peptide chain release factor 2 [Pelosinus fermentans JBW45]
gi|392451375|gb|EIW28369.1| Peptide chain release factor 2 [Pelosinus fermentans DSM 17108]
gi|392524812|gb|EIW47967.1| Peptide chain release factor 2 [Pelosinus fermentans JBW45]
Length = 327
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP K+ +V +L V + L E+ L+ Q+ ME D ++ A
Sbjct: 6 FWDDPDKAQKVAQELNVLKDGVAQFEQLSTAYEDLSLLWQMG-MEEKDESIYPEVLEAVD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++K +++ E++ +L G +D A +T+ AG+ G + WA+ LL MYVRWA+K GY+
Sbjct: 65 KMTKDIERLEVALMLSGEHDGSNAILTLHAGAGGTEAQDWAQMLLRMYVRWAEKNGYKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKSATI A+GYL E G H L+ + S + A VDV+P
Sbjct: 125 TMDFLAGDEAGVKSATILVSGLNAYGYLKSEKGVHRLVRISPFDASGRRHTSFAAVDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
++ + D+ I+ D+ + + G+ + A + H+PTG+ V+ T
Sbjct: 185 -EIDDNVDIDINMADVRVDTYRASGAGGQHINKTDSAVRMTHVPTGVVVQCQT 236
>gi|72383384|ref|YP_292739.1| peptide chain release factor 2 [Prochlorococcus marinus str.
NATL2A]
gi|72003234|gb|AAZ59036.1| bacterial peptide chain release factor 2 (bRF-2) [Prochlorococcus
marinus str. NATL2A]
Length = 313
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 7/204 (3%)
Query: 35 RYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTI 94
R E+A L +L E++ D + A+ + + L+++E +LL G D EGA ++I
Sbjct: 18 RGAIEDANLSVELYELDP-DEEILSEAHNGLEQLKQELERWETERLLSGIYDKEGAVLSI 76
Query: 95 KAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYL 154
AG+ G + WA+ LL MY RWA+ G + + + + G+KS TIE E YA+G+L
Sbjct: 77 NAGAGGTDAQDWAQMLLRMYTRWAENNGMKVSINELSEGEEAGIKSVTIEIEGVYAYGFL 136
Query: 155 SGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFS---SPSLPG 209
E G H L+ N + + + A V+V+P L+ +L+I ++DL + S G
Sbjct: 137 QNEKGTHRLVRISPFNANGKRQTSFAGVEVMP-KLDEEVELEIPEKDLEITTSRSGGAGG 195
Query: 210 ERQSIAKPAACIQHIPTGIAVRGT 233
+ + + A I H+PTGIAVR T
Sbjct: 196 QNVNKVETAVRILHVPTGIAVRCT 219
>gi|305679674|ref|ZP_07402484.1| peptide chain release factor 2 [Corynebacterium matruchotii ATCC
14266]
gi|305660294|gb|EFM49791.1| peptide chain release factor 2 [Corynebacterium matruchotii ATCC
14266]
Length = 368
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L+ LR + + ++ +LAE E + A
Sbjct: 43 SLWDDPEHAQQVTSELSQVQVQLKRLQSLRSRLTDLPIMYELAEEEGEGTDI---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ +D E++ +L G D A + I++G+ G+ WAE L+ MY+RWA+K+G +
Sbjct: 100 TDLRADIDALEVTTMLSGEYDSREALINIRSGAGGVDAADWAEMLMRMYIRWAEKQGRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E G H L+ + + + A V+V+
Sbjct: 160 EVYDISYAEEAGIKSATFIVHGEYMYGTLSVEQGVHRLVRISPFDNQARRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D +L ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEITDHIDIPDSELRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|421052306|ref|ZP_15515297.1| peptide chain release factor 2 [Pelosinus fermentans B4]
gi|421069109|ref|ZP_15530281.1| Peptide chain release factor 2 [Pelosinus fermentans A11]
gi|392443409|gb|EIW20950.1| peptide chain release factor 2 [Pelosinus fermentans B4]
gi|392450129|gb|EIW27182.1| Peptide chain release factor 2 [Pelosinus fermentans A11]
Length = 327
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP K+ +V +L V + L E+ L+ Q+ ME D ++ A
Sbjct: 6 FWDDPDKAQKVAQELNVLKDGVAQFEQLSTAYEDLSLLWQMG-MEEKDESIYPEVLEAVD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++K +++ E++ +L G +D A +T+ AG+ G + WA+ LL MYVRWA+K GY+
Sbjct: 65 KMTKDIERLEVALMLSGEHDGSNAILTLHAGAGGTEAQDWAQMLLRMYVRWAEKNGYKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKSATI A+GYL E G H L+ + S + A VDV+P
Sbjct: 125 TMDFLAGDEAGVKSATILVSGINAYGYLKSEKGVHRLVRISPFDASGRRHTSFAAVDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
++ + D+ I+ D+ + + G+ + A + H+PTG+ V+ T
Sbjct: 185 E-IDDNVDIDINMADVRVDTYRASGAGGQHINKTDSAVRMTHVPTGVVVQCQT 236
>gi|357413121|ref|YP_004924857.1| peptide chain release factor 2 [Streptomyces flavogriseus ATCC
33331]
gi|320010490|gb|ADW05340.1| peptide chain release factor 2 [Streptomyces flavogriseus ATCC
33331]
Length = 368
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLEVLFELAEDEG-DADALAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVRKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAERHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T E YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVEVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|300741817|ref|ZP_07071838.1| peptide chain release factor 2 [Rothia dentocariosa M567]
gi|300381002|gb|EFJ77564.1| peptide chain release factor 2 [Rothia dentocariosa M567]
Length = 375
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA--EMEAIDYGLFKRAYRA 64
LWDDP + V L+ +N L +L + ++ +++ +LA E E+ L A
Sbjct: 45 LWDDPEHAQRVTSALSHKQAELNRLTNLASRIDDVEVMVELAQTEDESSKEDLLAEAEAE 104
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++ K LD+ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 105 CKELRKKLDELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGYP 164
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+V
Sbjct: 165 TKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 224
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +E + L+I + ++ +F S G+ + A + HIPTGI V
Sbjct: 225 IPL-IEQTDALEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 274
>gi|269795803|ref|YP_003315258.1| peptide chain release factor 2 [Sanguibacter keddieii DSM 10542]
gi|269097988|gb|ACZ22424.1| bacterial peptide chain release factor 2 (bRF-2) [Sanguibacter
keddieii DSM 10542]
Length = 372
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME--AIDYGLFKRAYR 63
+LWDD + +V L+ + ++ + ++ + ++ +++ ++A A D + A +
Sbjct: 44 DLWDDTDAAQKVTTALSQAQTELDRIVNMESRIDDLEVLVEMATEGDGADDVETLEEAQK 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + L E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 104 DLDGIRRDLGDLEVRTLLSGEWDAREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+
Sbjct: 164 PTAVLDTSYAEEAGLKSATFEVKAPYAFGNLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + I D ++ +F S G+ + A + HIPTGI V
Sbjct: 224 VIPL-IESTDHVDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGIVV 274
>gi|84494447|ref|ZP_00993566.1| peptide chain release factor 2 [Janibacter sp. HTCC2649]
gi|84383940|gb|EAP99820.1| peptide chain release factor 2 [Janibacter sp. HTCC2649]
Length = 370
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ V L+ + + + + K ++ + + ++ + E D A +
Sbjct: 43 DLWDDQEKAQAVTSLLSRAKAEYDRVTGMDTKVDDLEALVEMGQEEN-DAETLLEAEKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K + + E+ LL G D A VTI+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 102 KIVKKAVGELEVRTLLSGEWDERSAVVTIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YAFG LS E G H L+ + + + V+V+
Sbjct: 162 KVMDTSYAEEAGIKSATFEVNVPYAFGNLSVEGGTHRLVRISPFDNQGRRQTSFVAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I + DL +F S G+ + A + HIPTG V
Sbjct: 222 PL-IEGTDSIEIPENDLKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGTVV 270
>gi|332288942|ref|YP_004419794.1| peptide chain release factor 2 [Gallibacterium anatis UMN179]
gi|330431838|gb|AEC16897.1| peptide chain release factor 2 [Gallibacterium anatis UMN179]
Length = 351
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W+DP K+ + L K SL+ VVN +K L+ ++ + +LA +EA D F A A
Sbjct: 31 DVWNDPEKA-QALGKERSSLEAVVNTIKSLQQGLDDVDGLLELA-IEADDQATFDEAV-A 87
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L + E ++ G ND V ++AGS G + W E LL MY+RWA+ +G+
Sbjct: 88 ELDQLEQSLAKLEFRRMFSGANDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGF 147
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +++ G+KSATI EYAFG+L ETG H L+ F + + H + + V
Sbjct: 148 KAELMEVSDGDVAGIKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFSAV 206
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P + D++I+ DL ++ + G+ + + A I H+PTGI V+
Sbjct: 207 FVYPE-INDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHMPTGIVVQ 259
>gi|227832559|ref|YP_002834266.1| peptide chain release factor 2 [Corynebacterium aurimucosum ATCC
700975]
gi|262183572|ref|ZP_06042993.1| peptide chain release factor 2 [Corynebacterium aurimucosum ATCC
700975]
gi|254790912|sp|C3PES4.1|RF2_CORA7 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|227453575|gb|ACP32328.1| peptide chain release factor RF-2 [Corynebacterium aurimucosum ATCC
700975]
Length = 368
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L LR + E+ ++++LAE E D +
Sbjct: 43 SLWDDPDHAQKVTSELSAQQAKLRKLNSLRGRIEDLPVMSELAEEEG-DEASQELVETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 102 KELGAAIESLEVTTMLSGEYDEREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 162 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + +++ D ++ ++ S G+ + A + HIPTGI V
Sbjct: 222 PV-VEQTDSIEVPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|225350864|ref|ZP_03741887.1| hypothetical protein BIFPSEUDO_02438 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158320|gb|EEG71562.1| hypothetical protein BIFPSEUDO_02438 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 376
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + +V KL+ + L + ++ + + +L + E D A
Sbjct: 45 LWDNPENAQKVTSKLSAVQSQLKRLASASQRIDDVETLVELGQEEE-DADTLAEAQSEVE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ GY+ +
Sbjct: 104 SIQNDLADMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRWAERNGYKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G +S E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L T PD +I + S P G+ + A I HIPTGI V
Sbjct: 224 LVEATDHIDVPDSEIRVDTYCSSGPG--GQGVNTTYSAVRITHIPTGIVV 271
>gi|405979658|ref|ZP_11038001.1| peptide chain release factor 2 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392074|gb|EJZ87135.1| peptide chain release factor 2 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 374
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 27/241 (11%)
Query: 6 NLWDDPTKSNEVLVKLADS-------LKVVNALKDLR----YKAEEAKLIAQLAEMEAID 54
+LWDDP+ + EV L+ K+V+ + DL E+ + A++ E D
Sbjct: 43 DLWDDPSHAQEVTSALSHRQSELDRVTKMVDRIDDLEAMVEMAGEDPEESAEILEEADGD 102
Query: 55 YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
K D+S L E+ LL G D A +TI++G+ G+ +AE LL MY
Sbjct: 103 LVTLK------ADISDL----EIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMY 152
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
+RWA++ GY +V+D + G+KSAT E + YA+G LS E G H L+ +
Sbjct: 153 LRWAERHGYPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGR 212
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + A V+V+PL +E++ ++I + +L +F S G+ + A + HIPTGI
Sbjct: 213 RQTSFAAVEVIPL-IESTDHIEIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGIV 271
Query: 230 V 230
V
Sbjct: 272 V 272
>gi|269925864|ref|YP_003322487.1| peptide chain release factor 2 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789524|gb|ACZ41665.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermobaculum
terrenum ATCC BAA-798]
Length = 372
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA--EMEAIDYGLFKRAYRA 64
LW DP ++ +V+ L D + + + E+A+++ LA E A D+ RA
Sbjct: 44 LWADPAEAQKVMKNLNDLKDQLEVWSKIERRLEDAEVLLDLAYEEDSASDFHEAASQIRA 103
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ L+ E+ LL G D E A + I A GI + WA L+ MY+RWA + G++
Sbjct: 104 ---LENQLNHLELELLLSGSYDQEDAIIAIHAREGGIDAQDWASMLVRMYLRWAQRRGWQ 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V + G KSATIE + +YA+GY E G H L+ + + + A V+V
Sbjct: 161 AELVSSIEGEEAGYKSATIEIKGKYAYGYAKAEAGQHRLVRLSPFDQAHRRHTSFALVEV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P ET P++QI +EDL + + S G+ + A I HIPTGI V
Sbjct: 221 LPDVEET-PEVQIREEDLKIDTYRASSAGGQHVNKTSSAVRITHIPTGIVV 270
>gi|271962992|ref|YP_003337188.1| peptide chain release factor 2 [Streptosporangium roseum DSM 43021]
gi|270506167|gb|ACZ84445.1| peptide chain release factor 2 [Streptosporangium roseum DSM 43021]
Length = 372
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V KL+ VN ++ L + E+ ++ +LA E D + A R
Sbjct: 44 DLWNDQEHAQKVTSKLSYLQGEVNRVESLGQRLEDLTVLYELAAAED-DEETREEADREL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + E+ LL G D A VTI + + G+ WA+ LL MY+RWA+++GY
Sbjct: 103 ASLKSDIGALEVRTLLSGEYDAREAVVTINSQAGGVDAADWAQMLLRMYIRWAERKGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G L GE G H L+ + + + A VDVV
Sbjct: 163 EVYETSYAEEAGIKSATFTVKAPYAYGTLRGEHGTHRLVRISPFDNQGRRQTSFAGVDVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +ET+ + I+++DL ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VETTDHIDINEDDLRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|116074014|ref|ZP_01471276.1| peptide chain release factor 2 [Synechococcus sp. RS9916]
gi|116069319|gb|EAU75071.1| peptide chain release factor 2 [Synechococcus sp. RS9916]
Length = 356
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 115/233 (49%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L + ++A +L +E D + A
Sbjct: 26 DFWDDQQNAQKQMRRLDEVKAQLEQLNQWKRAVDDADATVELYALEP-DDDMLGEAQTGL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL G D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 TQLRTELDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P +E L I ++DL + S G+ + + A I HIPTG+ VR T
Sbjct: 205 P-KIEEDVQLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCT 256
>gi|374583718|ref|ZP_09656812.1| peptide chain release factor 2 [Desulfosporosinus youngiae DSM
17734]
gi|374419800|gb|EHQ92235.1| peptide chain release factor 2 [Desulfosporosinus youngiae DSM
17734]
Length = 368
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 6/231 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +++ +L+ V ++L+ + EE + QLA +E D L +
Sbjct: 43 DLWDDPVNAQKIMQELSLHQGKVKTYEELKQELEETSTLWQLA-VEEDDVSLEPDIEQGI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL GP D A +T+ AG+ G + W + L +Y+RW ++ GY+
Sbjct: 102 EALKQRFEALELELLLSGPYDRNNAILTLHAGAGGTEAQDWVQMLYRLYIRWGERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KSAT+ F E A+GY E G H L+ + S + A VDV+
Sbjct: 162 ETLDFLHGEEAGIKSATLSFSGENAYGYAKSEKGVHRLVRISPFDASGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E + ++ I EDL + S G+ + A I H+PTGI V+
Sbjct: 222 PEVAEDNDEIPIDAEDLRIDTYRSGGAGGQHVNKTDSAIRITHLPTGIVVQ 272
>gi|256390605|ref|YP_003112169.1| peptide chain release factor 2 [Catenulispora acidiphila DSM 44928]
gi|256356831|gb|ACU70328.1| peptide chain release factor 2 [Catenulispora acidiphila DSM 44928]
Length = 368
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ V KL+ +N L + E+ +++ +L + E D
Sbjct: 43 DLWDDQAKAQAVTSKLSGLQAELNRFSTLNRRLEDIEVLFELGQSEG-DEDALAEVQGEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+DVSK + + E+ LL G D A VT++A + G+ +AE LL MY RWA++ Y+
Sbjct: 102 VDVSKAVGELEVRTLLSGEYDAREALVTLRAEAGGVDAADFAEMLLRMYTRWAERHNYQY 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT+ + YA+G LS E G H L+ + + + A V+VV
Sbjct: 162 EVYDTSYAEEAGIKSATLTVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S + I +++L ++ S G+ + A I H+P+GI V
Sbjct: 222 PV-VEQSDHVDIPEDELRVDVYRSSGPGGQGVNTTDSAVRITHLPSGIVV 270
>gi|269836751|ref|YP_003318979.1| hypothetical protein Sthe_0720 [Sphaerobacter thermophilus DSM
20745]
gi|269786014|gb|ACZ38157.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
20745]
Length = 369
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 11/230 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + V+ +L V +L +A + + + LAE D L +
Sbjct: 45 FWNDGAGAQRVMRRLGALRNQVETWTELHQQAADLRELIDLAEA---DDDLRDEIAAETE 101
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
V + ++Q E++ LL G D A + I AG+ G+ + WAE L+ MY+RWA G++ +
Sbjct: 102 RVLRGVEQLELNLLLSGQYDEHDAIMAIHAGTGGVDAQDWAEMLMRMYLRWASNRGFQAQ 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+KSATIE YA+GY GE G H L+ F H A A V+V+
Sbjct: 162 VLDVTEGEEAGIKSATIEIRGPYAYGYTKGEAGTHRLVRLSPFDQAHRRHTA-FALVEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E ++ I D+++ + S G+ + A I H+PTGI V
Sbjct: 221 PQ-VEEDTEIVIRDDEIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGIVV 269
>gi|311111708|ref|YP_003982930.1| peptide chain release factor RF2 [Rothia dentocariosa ATCC 17931]
gi|310943202|gb|ADP39496.1| peptide chain release factor RF2 [Rothia dentocariosa ATCC 17931]
Length = 375
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA--EMEAIDYGLFKRAYRA 64
LWDDP + V L+ +N L +L + ++ +++ +LA E E+ L A
Sbjct: 45 LWDDPEHAQRVTSALSHKQAELNRLTNLASRIDDVEVMVELAQTEDESSAEDLLAEAEAE 104
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++ K LD+ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 105 CKELRKKLDELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGYP 164
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+V
Sbjct: 165 TKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 224
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +E + L+I + ++ +F S G+ + A + HIPTGI V
Sbjct: 225 IPL-IEQTDALEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 274
>gi|291439311|ref|ZP_06578701.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
gi|291342206|gb|EFE69162.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
Length = 368
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ +L+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ADVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S + I + DL ++ S G+ + A I HIPTGI V
Sbjct: 223 PV-VEQSDHVDIDESDLRVDVYRSSGPGGQGVNTTDSAVRITHIPTGIVV 271
>gi|238063024|ref|ZP_04607733.1| peptide chain release factor 2 [Micromonospora sp. ATCC 39149]
gi|237884835|gb|EEP73663.1| peptide chain release factor 2 [Micromonospora sp. ATCC 39149]
Length = 373
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ +V +L+ ++ L LR + ++A+++ +LAE E D G+
Sbjct: 44 DLWDDQAKAQQVTSQLSYVNGEIDKLGSLRSRLDDARVLLELAEAED-DPGVLAEVETEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 GALTKSIQDMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFAVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E + + I + ++ ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-TEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 271
>gi|146296348|ref|YP_001180119.1| peptide chain release factor 2 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409924|gb|ABP66928.1| peptide chain release factor 2 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 323
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 17/225 (7%)
Query: 21 LADSLKVVNALKDL-----RYKA-----EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSK 70
+ +S KV+ +K L RY+ E+ K++ QL +E + + + +D+ +
Sbjct: 1 MENSQKVLQQIKRLKDKIERYQKLYSQWEDLKVLTQLC-IEESNIEMSDELEKDLIDLER 59
Query: 71 LLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDK 130
++++++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+ +D
Sbjct: 60 KIEEFKLEILLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKVETLDI 119
Query: 131 CCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLE 188
+ G+K+ T+ E A+GYL E G H L+ + + + A V+V+P +E
Sbjct: 120 LPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLP-EVE 178
Query: 189 TSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D++I +EDL F + G+ + + A I+HIPTGI V
Sbjct: 179 DDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVV 223
>gi|229491026|ref|ZP_04384859.1| peptide chain release factor 2 [Rhodococcus erythropolis SK121]
gi|453069985|ref|ZP_21973238.1| peptide chain release factor 2 [Rhodococcus qingshengii BKS 20-40]
gi|259585230|sp|C0ZXD0.1|RF2_RHOE4 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226184911|dbj|BAH33015.1| peptide chain release factor 2 [Rhodococcus erythropolis PR4]
gi|229322142|gb|EEN87930.1| peptide chain release factor 2 [Rhodococcus erythropolis SK121]
gi|452762530|gb|EME20826.1| peptide chain release factor 2 [Rhodococcus qingshengii BKS 20-40]
Length = 368
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ + + + LR + +E ++ +LAE E D A RASL
Sbjct: 44 LWNDQEHAQQVTSQLSHAQAELRRIVALRERLDEMPILYELAEDEGPDAVADADAERASL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A + I++G+ GI WAE L+ MY+RWA+K Y
Sbjct: 104 RDDIAAM----EVKTMLSGEYDERDALINIRSGAGGIDAADWAEMLMRMYIRWAEKHDYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y +G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGLKSATFAIKGPYTYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ ++I++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIEINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|224475896|ref|YP_002633502.1| peptide chain release factor RF-2, major part [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420503|emb|CAL27317.1| peptide chain release factor RF-2, major part [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 333
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 8/236 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + N WDD K+ E++ K VVN +DL + E+ +L E D L
Sbjct: 1 MMTDPNFWDDQNKAQEIIDKNNALKHVVNGYRDLEAELEDMSATHELL-AEEFDEDLKAD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LDQ+E+ LL GP D A + + G+ G + WA LL MY R+A++
Sbjct: 60 LEEEANAFKDKLDQFELQLLLNGPYDANNAILELHPGAGGTESQDWASMLLRMYQRYAEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+G++ D GVKS T+ + A+GYL E G H L+ F + H + +
Sbjct: 120 QGFKVEFADYLPGDEAGVKSVTLVIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 179
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+C DV+P F +++++ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SC-DVIPEFSNNEIEIEVNPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|408531516|emb|CCK29690.1| Peptide chain release factor 2 [Streptomyces davawensis JCM 4913]
Length = 352
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 28 SLWDDPDEAQKITSKLSHLQAEVRKTEALRGRIDDLAVLFEMAEEED-DPDTRAEAESEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ GY+
Sbjct: 87 ASVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEQLQRMYLRWAERHGYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 ELIETSYAEEAGIKSTTFSVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + +L ++ S G+ + A + HIPTGI V
Sbjct: 207 PV-VEQTDHIDIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 255
>gi|187777237|ref|ZP_02993710.1| hypothetical protein CLOSPO_00784 [Clostridium sporogenes ATCC
15579]
gi|187774165|gb|EDU37967.1| peptide chain release factor 2 [Clostridium sporogenes ATCC 15579]
Length = 325
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 14/238 (5%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
++N N W+D ++ ++ + L D L N LK+ E+ ++Q+ E D G
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLSKYNHLKNT---IEDIIGLSQMLSEEDDDMG-- 55
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K ++ + +D++++ LL G D A +T+ +G G + W + L MY RWA
Sbjct: 56 KEILSEYKNIKEEIDRFKIETLLSGEYDRNNAIMTLHSGVGGTDAQDWTDMLFRMYTRWA 115
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + + +
Sbjct: 116 EKEGFTVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQTS 175
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
A ++V+P L +++I EDL + + G+ + + A I HIPTGI V+
Sbjct: 176 FASIEVLPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQ 232
>gi|357112579|ref|XP_003558086.1| PREDICTED: peptide chain release factor 2-like [Brachypodium
distachyon]
Length = 465
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V + + + + ++ + E + +LA E D L + RA
Sbjct: 136 DLWEDPVFAGKVSREQGELMGKIKSVNQFEQELMEHIDMLRLAREEG-DNELETESMRAL 194
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ GI WA ++NMY WA + GY
Sbjct: 195 ADMRRNAKEKELNALLSGDNDSYPCFIEVQAGAGGIESMDWAAMVMNMYRSWAQRRGYAV 254
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + +YAFGY E G H L+ F +G H + A V V
Sbjct: 255 TVVEEMPGEVAGIKRATIKVDGDYAFGYAKSEIGVHRLVRISPFDSGKRRH-TSFAAVAV 313
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+P+ + S QI+D DL F S G+ + + A I HIPTG
Sbjct: 314 IPILGDASSRYQINDSDLRIERFRSGGPGGQHANTTESAVRIVHIPTG 361
>gi|357389817|ref|YP_004904657.1| putative peptide chain release factor 2 [Kitasatospora setae
KM-6054]
gi|311896293|dbj|BAJ28701.1| putative peptide chain release factor 2 [Kitasatospora setae
KM-6054]
Length = 351
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD + +V +L+ + ++ LR + E+ ++ +LAE E D A
Sbjct: 28 TLWDDVANAQKVTSRLSFLQGELRKVETLRGRVEDLGVLFELAEAED-DADTRTEAEAEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K +++ E+ LL G D A V I+A + G+ +AEQL+ MY+RWA++ GY
Sbjct: 87 VSVQKAVEELEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEQLMRMYLRWAERHGYPT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 EVYDTSYAEEAGIKSATFTVKSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +ETS + I + DL ++ + G+ + A I H+PTGI V
Sbjct: 207 PV-VETSDHVDIDEGDLRIDVYRASGPGGQGVNTTDSAVRITHLPTGIVV 255
>gi|227549373|ref|ZP_03979422.1| peptide chain release factor 2 [Corynebacterium lipophiloflavum DSM
44291]
gi|227078558|gb|EEI16521.1| peptide chain release factor 2 [Corynebacterium lipophiloflavum DSM
44291]
Length = 365
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA----IDYGLFKRA 61
+LWDDP + +V +L++ + + LR + ++ ++ +LAE E +D L
Sbjct: 43 SLWDDPAHAQKVTTELSNVQARLKKVASLRERIDDLPVMYELAEEEGEPALVDDEL---- 98
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A+L+ S + E+ +L G D A V I++G+ G+ WAE L+ MY RWA+K
Sbjct: 99 --AALEES--IGSLEVQTMLSGEYDEREAVVNIRSGAGGVDAADWAEMLMRMYTRWAEKN 154
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
G++ V D + G+KSAT EY +G LS E GAH L+ + + + A
Sbjct: 155 GHKVEVYDISYAEEAGIKSATFVVRGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAE 214
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +E + + I D D+ ++ S G+ + A I H+PTGI V
Sbjct: 215 VEVLPV-VEQTDHIDIPDSDIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGIVV 267
>gi|269128206|ref|YP_003301576.1| peptide chain release factor 2 [Thermomonospora curvata DSM 43183]
gi|268313164|gb|ACY99538.1| peptide chain release factor 2 [Thermomonospora curvata DSM 43183]
Length = 378
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+LW D ++ +V +L+ +N + LR + E+ + +LAE M+ D A
Sbjct: 44 DLWSDQERAQQVTRRLSYLENELNRVTSLRQRLEDVATLYELAEEMDDADTRAEADAELE 103
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
SL K + Q E+ L+ G D A +TI A + G+ WA+QL MY+RWA++ GY
Sbjct: 104 SL--RKDIQQLEVRTLMSGEYDHREALITINAQAGGVDAADWAQQLQRMYLRWAERHGYP 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ + + G+KS T + YA+G L GE G H L+ + + + A +DV
Sbjct: 162 TEIYETSYAEEAGIKSTTFAVKAPYAYGTLRGEHGTHRLVRISPFDNQGRRQTSFAGLDV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VP+ +E S +++ + DL ++ S G+ + A I HIPTGI V
Sbjct: 222 VPV-VEQSDHVEVDENDLRIDVYRSSGPGGQGVNTTDSAVRITHIPTGIVV 271
>gi|259506494|ref|ZP_05749396.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314]
gi|259165914|gb|EEW50468.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314]
Length = 387
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 9/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + +V +L+ + + +LR + ++ ++ +LAE E D L
Sbjct: 64 LWDNPDHAQQVTSELSHVQAELRKVTELRQRLDDLPIMYELAEEEGDDTSLVDEEL---A 120
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ ++ E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K G++
Sbjct: 121 DLRTGVEALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKHGHKVD 180
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+P
Sbjct: 181 VYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVLP 240
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 241 V-VEQVDSIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 288
>gi|213965439|ref|ZP_03393634.1| peptide chain release factor 2 [Corynebacterium amycolatum SK46]
gi|213951823|gb|EEB63210.1| peptide chain release factor 2 [Corynebacterium amycolatum SK46]
Length = 370
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-IDYGLFKRAYRA 64
+LWDDP + +V L+ + + + LR + ++ ++ +LAE E+ D A RA
Sbjct: 43 SLWDDPDHAQQVTSALSQAQAKMKKIDSLRGRLDDLSVMYELAEEESDSDAVEMADAERA 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + ++ E++ +L GP D A + I++G+ G+ WAE L+ MY+RWADK G++
Sbjct: 103 ELRAA--IESLEVTTMLSGPYDEREAVINIRSGAGGVDAADWAEMLMRMYLRWADKHGHK 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ P + T V
Sbjct: 161 VEVYDTSYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRISPFDNQGRRQTSFAEVEV 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+E + + I + DL ++ S G+ + A + H+PTGI V
Sbjct: 221 LPVVEETDHIDIPESDLRIDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 270
>gi|25027367|ref|NP_737421.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314]
gi|23492648|dbj|BAC17621.1| putative translation releasing factor RF-2 [Corynebacterium
efficiens YS-314]
Length = 389
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 9/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWD+P + +V +L+ + + +LR + ++ ++ +LAE E D L
Sbjct: 66 LWDNPDHAQQVTSELSHVQAELRKVTELRQRLDDLPIMYELAEEEGDDTSLVDEEL---A 122
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ ++ E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K G++
Sbjct: 123 DLRTGVEALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKHGHKVD 182
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+P
Sbjct: 183 VYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVLP 242
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 243 V-VEQVDSIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 290
>gi|266622716|ref|ZP_06115651.1| peptide chain release factor 2, partial [Clostridium hathewayi DSM
13479]
gi|288865539|gb|EFC97837.1| peptide chain release factor 2 [Clostridium hathewayi DSM 13479]
Length = 275
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+DP KS ++ V+LA +LK VN KDL + E+ ++ ++ E D +
Sbjct: 6 FWEDPEKSTKI-VQLAKNLKDTVNGYKDLEQQYEDIGVMIEMGNEEN-DPSVVPEVEEML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L++ ++ LL G D + A + + AG+ G W L MY RWA+K+GY
Sbjct: 64 KEFKDKLEEIRINTLLSGEYDSDNAILRLNAGAGGTESCDWCSMLYRMYCRWAEKKGYSV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS TI+ E AFGYL E G H L+ N + + + DV+
Sbjct: 124 EVLDYLDGEEAGIKSVTIQINGENAFGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D+ I++EDL + S G+ + A I H+PTGI V+
Sbjct: 184 P-DIEEDLDVDINEEDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQ 233
>gi|33864328|ref|NP_895888.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9313]
gi|33641108|emb|CAE22237.1| peptide-chain-release factor RF-2 [Prochlorococcus marinus str. MIT
9313]
Length = 375
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + + + +L + + + R +A+ +L ++E D + A
Sbjct: 45 DFWNDQQNAQKQMRQLDEVKAQLTQITLWRSAVNDAQATLELYDLEPDDE-MLSEAQSGL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA ++I AG+ G + WA+ LL MY RWA+
Sbjct: 104 KQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMTV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT+E E YA+GYL E G H L+ N + + + A V+++
Sbjct: 164 TVDELSEGEEAGIKSATVEIEGRYAYGYLRNEKGTHRLVRISPFNANGKRQTSFAGVEIM 223
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P ++ +L I ++DL + S G+ + + A I HIPTG+AVR T
Sbjct: 224 P-KIDQEVELDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 275
>gi|344997089|ref|YP_004799432.1| hypothetical protein Calla_1875 [Caldicellulosiruptor lactoaceticus
6A]
gi|343965308|gb|AEM74455.1| hypothetical protein Calla_1875 [Caldicellulosiruptor lactoaceticus
6A]
Length = 370
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D S +VL K+ + + L + E+ K++ +L+ ++ ++ + + +
Sbjct: 43 DFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LDEGNHEMAEELEKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 102 LDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAVKKGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+K+ T+ E A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E D++I +EDL F + G+ + + A I+HIPTGI V
Sbjct: 222 P-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVV 270
>gi|333921383|ref|YP_004494964.1| peptide chain release factor 2 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483604|gb|AEF42164.1| Peptide chain release factor 2 [Amycolicicoccus subflavus DQS3-9A1]
Length = 370
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME--------AIDYGL 57
+LWDD + +V +L+ + + L++LR + ++ ++ +LAE E +
Sbjct: 43 DLWDDQEHAQQVTSQLSYAQGELRRLEELRQRVDDLPVMYELAEAEEGVAAQEATTEADD 102
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
+ A RA +++ E+ LL G D A VTI++G+ GI WAE L+ MY+RW
Sbjct: 103 ERTALRAEIEL------LEVRTLLSGEYDQREALVTIRSGAGGIDAADWAEMLMRMYIRW 156
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+K Y V D + G+KSAT + Y +G LS E G H L+ + +
Sbjct: 157 AEKHKYSVEVYDTSYAEEAGIKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQARRQT 216
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V+V+P+ +ET+ + I + +L +F S G+ + A I H+PTGI V
Sbjct: 217 SFAEVEVLPV-VETTDSIDIPETELRVDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 273
>gi|451817487|ref|YP_007453688.1| peptide chain release factor 2 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783466|gb|AGF54434.1| peptide chain release factor 2 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 323
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ EV K + LR K E+ +++ ++ ME D ++
Sbjct: 6 FWDDIKRAEEVTKKSKSIKDQIEKFDKLRSKVEDVEVLKEI--MEDDDEESANEIIQSIR 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+V +D Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 EVEAEIDDYNMKILLCGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSVE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 124 TIDLLPGDEAGIKSVTLKITGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFASMEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L D++I +DL + S G+ + A I H+PTGI V+
Sbjct: 184 E-LTKEQDIEIKADDLRIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQ 232
>gi|218132301|ref|ZP_03461105.1| hypothetical protein BACPEC_00159 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992816|gb|EEC58817.1| peptide chain release factor 2 [[Bacteroides] pectinophilus ATCC
43243]
Length = 333
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD KS E + +L +L+ ++ + + +A+ E D L
Sbjct: 6 FWDDADKSQEAMKELKSLKDSFEKYNELKQGMDDIETLIAMADEEN-DESLVPEVEEEFN 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K D + LL G D + A +T+ AG+ G W + L+ MY RWA+ +GY+
Sbjct: 65 VFEKKFDALRIGTLLSGEYDRDNAILTLHAGAGGTEACDWCQMLMRMYTRWAESKGYKTE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
VVD GVK+ TIE E E A+GYL E G H L+ N + + + DV+P
Sbjct: 125 VVDYLEGDEAGVKAVTIEIEGENAYGYLRSEHGIHRLVRISPFNAAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+E D++I+D+DL + S G+ + A I H+PTGI V+
Sbjct: 185 -DIEEDVDVEINDDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQ 233
>gi|312792717|ref|YP_004025640.1| hypothetical protein Calkr_0478 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179857|gb|ADQ40027.1| hypothetical protein Calkr_0478 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 372
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D S +VL K+ + + L + E+ K++ +L+ ++ ++ + + +
Sbjct: 45 DFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDLKVLTELS-LDEGNHEMAEELEKEL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD+ + ++ +++ LL GP D A ++I AG+ G + WAE LL MY RWA K+GY+
Sbjct: 104 LDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAVKKGYKV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+K+ T+ E A+GYL E G H L+ + + + A V+V+
Sbjct: 164 ETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVL 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E D++I +EDL F + G+ + + A I+HIPTGI V
Sbjct: 224 P-EVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVV 272
>gi|304317582|ref|YP_003852727.1| hypothetical protein Tthe_2166 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779084|gb|ADL69643.1| hypothetical protein Tthe_2166 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 365
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D KS E+ KL D ++++ + + E+ + +L +E D L + +
Sbjct: 43 DFWNDLQKSQELSKKLKDLKELISEYESIEKLCEDLNALIELG-IEEGDESLSQEVHEEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK ++ ++ LL GP D A ++I AG+ G + W E LL MY+RWA + Y
Sbjct: 102 KSLSKKINDMKIKTLLSGPYDRNNAILSIHAGAGGTEAQDWTEMLLRMYMRWASSKNYEV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD + GVKS TI + +A+GYL GE G H L+ + + + A V+V+
Sbjct: 162 ETVDYLPGDDAGVKSVTIMVKGAFAYGYLKGEAGVHRLVRISPFDAAGRRHTSFALVEVL 221
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E D++ I EDL + S G+ + + A I HIPTGI V+
Sbjct: 222 P---EIDDDIKVDIRPEDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGIIVQ 271
>gi|429730352|ref|ZP_19265000.1| peptide chain release factor 2 [Corynebacterium durum F0235]
gi|429147943|gb|EKX90961.1| peptide chain release factor 2 [Corynebacterium durum F0235]
Length = 376
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA--IDYGLFKRAYR 63
+LWDDP + +V +L+ + + +LR + ++ ++ + AE E I+ +RA
Sbjct: 51 SLWDDPDHAQQVTSQLSHVQAELRRVTELRQRLDDLPILYEFAEEEGDGIEAADEERAA- 109
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
V ++ E+ +L G D A + I++G+ G+ WAE LL MY RWA+K GY
Sbjct: 110 ----VRAEIETLEVKTMLSGEYDAREALINIRSGAGGVDAADWAEMLLRMYTRWAEKAGY 165
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+
Sbjct: 166 SVDIYDISYAEEAGIKSATFVVHGEYTYGTLSVEQGAHRLVRISPFDNQGRRQTSFAEVE 225
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ +E + +++ D ++ ++ S G+ + A + HIPTGI V
Sbjct: 226 VLPV-VEQTDHIEVPDSEIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 276
>gi|398785517|ref|ZP_10548476.1| peptide chain release factor 2 [Streptomyces auratus AGR0001]
gi|396994386|gb|EJJ05426.1| peptide chain release factor 2 [Streptomyces auratus AGR0001]
Length = 368
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ V + LR + ++ +++ +LAE E D A
Sbjct: 44 SLWDDPESAQKVTSRLSYLQGQVRRAEQLRSRVDDLEVLFELAEAED-DEDARAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K +++ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TDVRKAVEELEVRTLLSGEYDSREAVVNIRAEAGGVDAADFAEKLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFSVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEKTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|229817216|ref|ZP_04447498.1| hypothetical protein BIFANG_02476 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785005|gb|EEP21119.1| hypothetical protein BIFANG_02476 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 373
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + + L + ++ + + +L + E D A
Sbjct: 45 LWDDPENAQKVTSRLSAAQSQLKRLNSASQRIDDVETLVELGQEEE-DADTLAEAQEEVK 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 KIQSDLDDMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PTG+ V
Sbjct: 224 L-VEATDHIDIPDSDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTGLVV 271
>gi|50954999|ref|YP_062287.1| peptide chain release factor 2 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951481|gb|AAT89182.1| peptide chain release factor 2 [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 372
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V L+ + + ++ + ++ +++ +LA E D A
Sbjct: 44 DLWDDPVNAQKVTSALSHRQSELARITAIQQRLDDLEVLVELAN-EGDDEESAAEARAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI++G+ G +AE LL MY+RWA++ Y
Sbjct: 103 EALQKALGDLEVQTLLSGEYDERAAIVTIRSGAGGDDATDFAEMLLRMYLRWAEQHKYPV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSF-PHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L P GS + + A V+V+
Sbjct: 163 TVMDTSYAEGAGIKSATFEVDMPYAFGTLSVEAGTHRLARISPFGSADKRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + + + D+ +F S G+ + A + H+PTGI V
Sbjct: 223 PL-MEEANQVDVPEGDIRVDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVV 271
>gi|407277743|ref|ZP_11106213.1| peptide chain release factor 2 [Rhodococcus sp. P14]
Length = 374
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK----RAY 62
LW+D + +V +L+ + + +++LR + ++ ++ +LAE E + A
Sbjct: 44 LWNDQEHAQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAEGEEGEDRTVALADADAE 103
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RA+L ++ E+ LL G D A V I+AG+ G+ WAE L+ MY+RWADK G
Sbjct: 104 RAALRTD--IEAMEVRTLLSGEYDQRDALVNIRAGAGGVDAADWAEMLMRMYIRWADKHG 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT + Y +G LS E G H L+ + + + A V
Sbjct: 162 YPVEVYDTSYAEEAGIKSATFAIKAPYTYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-VETTDHIDVDENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|407982835|ref|ZP_11163500.1| peptide chain release factor 2 [Mycobacterium hassiacum DSM 44199]
gi|407375566|gb|EKF24517.1| peptide chain release factor 2 [Mycobacterium hassiacum DSM 44199]
Length = 368
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ ++ +L+ + + ++DLR + ++ ++ +LAE E A
Sbjct: 43 HLWDDQDRAQKITSELSRTQGELRRVEDLRRRLDDLPVLYELAEEE----NSADARDEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ +L ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K G
Sbjct: 99 AELKRLREDIEAMEVRTLLSGEYDQREALVTIRSGAGGVDAADWAEMLMRMYIRWAEKHG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V+D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEVLDTSYAEEAGIKSATFVVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +E + + I + ++ ++ S G+ + A I H+PTGI V
Sbjct: 218 VEVLPV-VEQTDHIDIPESEIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>gi|123965444|ref|YP_001010525.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9515]
gi|123199810|gb|ABM71418.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9515]
Length = 354
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D E A V+I AG+ G + W E LL MY RWAD G + D
Sbjct: 91 LDKWEFQRLLSGEYDKESAIVSINAGAGGTDAQDWVEILLRMYSRWADNNGMSLEITDLS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 NGEEAGIKSVTFEVNGKYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDQ 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
S L+I D+DL + S G+ + + A I H+P+GIAVR T
Sbjct: 210 SISLEIPDKDLEITTSRSGGAGGQNVNKVETAVRILHLPSGIAVRCT 256
>gi|300853467|ref|YP_003778451.1| peptide chain release factor B [Clostridium ljungdahlii DSM 13528]
gi|300433582|gb|ADK13349.1| peptide chain release factor B [Clostridium ljungdahlii DSM 13528]
Length = 329
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
N WD ++ EV + L + L + N L+ + +A+++A +AE E D K
Sbjct: 7 NFWDHLERAQEVTSEEKFLNEKLDMYNKLES---RINDAEILAHIAEEEE-DVSDCKDIL 62
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
D+ ++D+ ++ LL G D A + + G G + W E LL MY RWA+K G
Sbjct: 63 SEVEDIENIIDKLKIEILLSGEYDKNNAILNLHVGVGGTDAQDWTEMLLRMYTRWAEKSG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ +D + G+KS ++ E+A+GYL E G H L+ N + + + A V
Sbjct: 123 YKVETLDILPADDAGIKSVSLRIIGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASV 182
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+V+P L D+ I EDL + S G+ + + A I HIPTGI V+
Sbjct: 183 EVLP-ELTKDQDIDIRPEDLRVDTYRSSGAGGQHVNKTESAVRITHIPTGIVVQ 235
>gi|189425791|ref|YP_001952968.1| hypothetical protein Glov_2735 [Geobacter lovleyi SZ]
gi|189422050|gb|ACD96448.1| hypothetical protein Glov_2735 [Geobacter lovleyi SZ]
Length = 372
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP+ S ++L K K++ + L +A++ +++ +L E E+ D ++ +
Sbjct: 44 FWDDPSGSQDILKKRTVIEKLLQSWDSLNRQADDVRVMIELGE-ESSDEDTLTEVHQMNE 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +++ E ++L G +D G V++ +G+ G + WA LL M +R+ +K+G++
Sbjct: 103 RLKSGVEEAEFQRMLSGTHDRNGCFVSVNSGAGGTESQDWANMLLRMLLRYCEKKGWKAV 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D + G+KSAT E+A+G+L E G H L+ F + + H + A V V
Sbjct: 163 ITDYQDGEEAGLKSATFSVSGEFAYGHLKAEAGVHRLVRLSPFDSNNRRH-TSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E D++I+D DL + S G+ + A I H+PT I V
Sbjct: 222 PEIEEEDIDIRIADSDLRVDTYRSSGSGGQHVNTTDSAVRITHLPTNIVV 271
>gi|429767404|ref|ZP_19299603.1| peptide chain release factor 2 [Clostridium celatum DSM 1785]
gi|429181012|gb|EKY22207.1| peptide chain release factor 2 [Clostridium celatum DSM 1785]
Length = 325
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ +V + ++ + L + ++ +++A+LAE D
Sbjct: 6 FWDDIKRAEDVTKESKRIKDKIDRYESLVTRLDDVEVLAELAED---DEETINEVIVEIR 62
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ KL+D+Y++ LL G D A + + AG G W LL MY RW +K+GY+
Sbjct: 63 DIEKLIDEYKIELLLSGEYDKNDAILNLHAGVGGSDANDWTLMLLRMYTRWCEKKGYKVE 122
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KSAT+ + E+A+GYL E G H L+ N + + + A ++V+P
Sbjct: 123 TLDLLEGDEAGIKSATLRVKGEFAYGYLKAEKGVHRLVRISPFNANGKRQTSFASIEVLP 182
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L D++I EDL + + G+ + + A I HIPTGI V+
Sbjct: 183 -ELTKDQDIEIRQEDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQ 231
>gi|296140715|ref|YP_003647958.1| peptide chain release factor 2 [Tsukamurella paurometabola DSM
20162]
gi|296028849|gb|ADG79619.1| peptide chain release factor 2 [Tsukamurella paurometabola DSM
20162]
Length = 371
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRAY 62
LW+D + +V +L+ + + + DLR + ++ ++ +LAE E A
Sbjct: 44 LWNDQANAQQVTSQLSHAQSELRRVTDLRQRLDDLPVLYELAEAEEGDDLAAALEDADAD 103
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RA L ++ E+ +L G D A V I+AG+ G+ WAE L+ MY+RWA+K G
Sbjct: 104 RAKL--RGEIEAMEVKTMLSGEYDARDALVNIRAGAGGVDAADWAEMLMRMYIRWAEKHG 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT + +YA+G LS E G H L+ + + + A V
Sbjct: 162 YGVEVYDTSYAEEAGLKSATFAIKTDYAYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + + + ++ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-VETTDHIDVDENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|115311854|sp|Q4L4H9.2|RF2_STAHJ RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 371
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WDD K+ +V+ K VVN +L + E+ +L + E +D +
Sbjct: 39 MMTEPDFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQ-EELDGDVKSD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LD + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 98 LEQNVLDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 QGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 218 SCDVIPEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
>gi|218779410|ref|YP_002430728.1| peptide chain release factor 2 [Desulfatibacillum alkenivorans
AK-01]
gi|218760794|gb|ACL03260.1| peptide chain release factor 2 [Desulfatibacillum alkenivorans
AK-01]
Length = 327
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD P K+ +L + +V + L + EA+++ +L +E D + A + +
Sbjct: 6 FWDSPDKNTAILKERTSITSLVEGWEKLAEELSEAEVLLELG-VEEEDGQTIEEARQHLV 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K +D+ +S++L G +D A V I AG+ G + WAE LL MY+RW +++G+
Sbjct: 65 KIEKGIDKLSLSRMLDGEDDARNAIVAINAGAGGTDAQDWAEMLLRMYLRWVEQKGFSYS 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D GVK T +YA+GYL E G H L+ N + + + A V V P
Sbjct: 125 IIDYQPGDEAGVKGVTFTVTGDYAYGYLKTEEGVHRLVRISPFNSNGKRQTSFASVAVYP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ + ++++DL +F + G+ + A I HIPTGI V+
Sbjct: 185 E-IDQEIVVDVNEKDLRIDVFRASGAGGQHVNKTSSAVRILHIPTGIVVQ 233
>gi|300783176|ref|YP_003763467.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei U32]
gi|384146402|ref|YP_005529218.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
gi|399535062|ref|YP_006547724.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
gi|299792690|gb|ADJ43065.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei U32]
gi|340524556|gb|AEK39761.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
gi|398315832|gb|AFO74779.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei S699]
Length = 357
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V +L+ + + DLR + ++ ++ +LAE E D G A
Sbjct: 35 NLWDDPEAAQKVTSQLSHRQGELRRVSDLRQRLDDLGVLYELAEAEG-DSGSMAEAEAEL 93
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY
Sbjct: 94 TDLGKAIDGLEVRTLLSGEYDDRNAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYPT 153
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G+KSAT + Y +G LS E G H L+ F N SF H L
Sbjct: 154 DVYDISYAEEAGIKSATFKVSAPYVYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 213
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+ V D+++ ++ S G+ + A I H+PTGI V
Sbjct: 214 PEVEEVDHVDVAEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVV 262
>gi|115452569|ref|NP_001049885.1| Os03g0305700 [Oryza sativa Japonica Group]
gi|108707729|gb|ABF95524.1| peptide chain release factor 2 family protein, expressed [Oryza
sativa Japonica Group]
gi|113548356|dbj|BAF11799.1| Os03g0305700 [Oryza sativa Japonica Group]
gi|215707188|dbj|BAG93648.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 468
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V + + + + ++ + E + +LA E D L RA
Sbjct: 142 DLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLAR-EEDDNELETETMRAL 200
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 201 AEMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYSSWAQRRGYTV 260
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 261 SIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 319
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
VP+ + S QI D DL F S G+ + + A I HIPTGI
Sbjct: 320 VPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGI 368
>gi|385678972|ref|ZP_10052900.1| peptide chain release factor RF-2 [Amycolatopsis sp. ATCC 39116]
Length = 367
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 114/235 (48%), Gaps = 13/235 (5%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N NLWDDP + +V +L+ + + DLR + ++ +++ +LAE E D A
Sbjct: 41 NPNLWDDPEAAQKVTSQLSHRQAELRRVTDLRQRLDDLEVLHELAEAEG-DNASKAEAEG 99
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++K +D E+ LL G D A VTI+A + G+ WAE LL MY+RWA++ GY
Sbjct: 100 ELTRLAKEVDALEVRTLLSGEYDDRNAVVTIRAEAGGVDAADWAEMLLRMYLRWAERHGY 159
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEA 175
V D + G+KSAT + Y +G LS E G H L+ F N SF H
Sbjct: 160 PTDVYDISYAEEAGIKSATFKVAAPYIYGTLSVEQGTHRLVRISPFDNQGRRQTSFAHVE 219
Query: 176 TLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L V+ V D+++ +F S G+ + A I H+PTGI V
Sbjct: 220 VLPEVEEVDHVEIPEKDIRVD----VFRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>gi|70727136|ref|YP_254052.1| peptide chain release factor 2 [Staphylococcus haemolyticus
JCSC1435]
gi|68447862|dbj|BAE05446.1| peptide chain release factor 2 [Staphylococcus haemolyticus
JCSC1435]
Length = 332
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +V+ K VVN +L + E+ +L + E +D + +
Sbjct: 5 DFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQ-EELDGDVKSDLEQNV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
LD + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ +++G++
Sbjct: 64 LDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQQGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|125543555|gb|EAY89694.1| hypothetical protein OsI_11230 [Oryza sativa Indica Group]
Length = 468
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V + + + + ++ + E + +LA E D L RA
Sbjct: 142 DLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLAR-EEDDNELETETMRAL 200
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 201 AEMRRSAKEKELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYSSWAQRRGYTV 260
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 261 SIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 319
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
VP+ + S QI D DL F S G+ + + A I HIPTGI
Sbjct: 320 VPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGI 368
>gi|430742122|ref|YP_007201251.1| peptide chain release factor 2 [Singulisphaera acidiphila DSM
18658]
gi|430013842|gb|AGA25556.1| peptide chain release factor 2 [Singulisphaera acidiphila DSM
18658]
Length = 370
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA---IDYGLFKRAY 62
+ W+D K+ V+++L V+ ++L ++++ + + +LAE + D + A
Sbjct: 41 SFWNDQEKAKGVILELQTLNAVLKPFEELGRESDDLEALIELAEEDGGDDFDEEIRSGAK 100
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+A LD + +E+ +L GPND A VTI AG+ G WAE +L MY+ WA+ +
Sbjct: 101 KALLD----FENFELRSMLSGPNDHCNAFVTIHAGAGGTEACDWAEMILRMYLMWAESKK 156
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
+ ++ D+ G++ ATI + EYA+GYL ETG H L+ + + + + A V
Sbjct: 157 FSAQITDREDGGAAGIQVATIHIKGEYAYGYLKCETGVHRLVRISPYDSAGRRQTSFASV 216
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D++P ++ + D+ + D++L +F S G+ Q+ + H+PTG+A
Sbjct: 217 DILPE-VDDTIDIVLRDDELKRDVFRSGGPGGQHQNKTESGVRYTHLPTGVAA 268
>gi|331695045|ref|YP_004331284.1| peptide chain release factor 2 [Pseudonocardia dioxanivorans
CB1190]
gi|326949734|gb|AEA23431.1| Peptide chain release factor 2 [Pseudonocardia dioxanivorans
CB1190]
Length = 369
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +LA + + ++DLR + ++ ++ +LAE E D A R
Sbjct: 43 DLWNDTETAQKVTSRLAHANGELRRVEDLRRRLDDLPVLYELAEDEG-DESAIADADRDR 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + ++ E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ GY
Sbjct: 102 VALRAEIESLEVRTLLSGEYDEREALVTIRSEAGGVDAADFAEMLMRMYLRWAERHGYGV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V
Sbjct: 162 DVYDTSYAEEAGIKSATFQVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVA 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E++ + I ++DL ++ S G+ + A + HIPTGI V
Sbjct: 222 PV-VESTDHIDIDEKDLRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 270
>gi|384917335|ref|ZP_10017462.1| Peptide chain release factor 2 [Methylacidiphilum fumariolicum
SolV]
gi|384525243|emb|CCG93335.1| Peptide chain release factor 2 [Methylacidiphilum fumariolicum
SolV]
Length = 337
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 14/224 (6%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKL 71
+KS E+ KL+D ++N KDL + K E+ D L + R + S L
Sbjct: 18 SKSKELKAKLSDYYTILNRFKDLEALFDLLK--------ESGDVSLLEELEREIKNYSDL 69
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD E+ +L P D + A ++I AG+ G WA LL MY R+A++ GY+ +VD
Sbjct: 70 LDSVEVKLILSDPLDQKNAILSIHAGAGGTEACDWAAMLLRMYQRYAERHGYKVSLVDIL 129
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KSA+I YA+GYL E G H L+ N + + A VDVV ET
Sbjct: 130 PGEEAGIKSASILVSGNYAYGYLKAERGVHRLVRISPFNAQGKRQTSFASVDVVAEVDET 189
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D++I + DL +F S G+ + A I H+PTG+ V
Sbjct: 190 -IDIEIKESDLKIDVFRSSGHGGQGVNTTDSAVRITHLPTGLVV 232
>gi|239988119|ref|ZP_04708783.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
11379]
Length = 352
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 28 SLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFELAEAEG-DADAQAEAETEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 87 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 207 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 255
>gi|423076128|ref|ZP_17064842.1| peptide chain release factor 2 [Desulfitobacterium hafniense DP7]
gi|361852945|gb|EHL05143.1| peptide chain release factor 2 [Desulfitobacterium hafniense DP7]
Length = 314
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + LD E+ LL GP D A VT+ AG+ G + W L MY+R+ ++ GY+
Sbjct: 48 LALQQRLDGLELEILLSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKV 107
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ F E AFGYL E G H L+ + S + A VDV+
Sbjct: 108 ETMDFLPGDEAGIKSATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 167
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P +E + ++QI EDL + + G+ + A I H+PTGI V+ +
Sbjct: 168 PEVMEDNAEIQIPPEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQS 221
>gi|383808491|ref|ZP_09964031.1| peptide chain release factor 2 [Rothia aeria F0474]
gi|383448714|gb|EID51671.1| peptide chain release factor 2 [Rothia aeria F0474]
Length = 375
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
LWDDP + +V L+ +N L L + ++ +++ +LAE E L A
Sbjct: 44 QLWDDPQVAQQVTSALSHKQAELNRLTSLGSRIDDVEVMVELAEAEDPQSAQELLSEART 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + + L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 104 ECVSIRRKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+++D + G+KSAT E +AFG LS E G H L+ + + + A V+
Sbjct: 164 PTKLLDTSYAEEAGLKSATFEVNAPFAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VVPL +E + ++I + ++ +F S G+ + A + H+PTGI V
Sbjct: 224 VVPL-IEQTDAIEIPEAEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVV 274
>gi|89897615|ref|YP_521102.1| hypothetical protein DSY4869 [Desulfitobacterium hafniense Y51]
gi|89337063|dbj|BAE86658.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 315
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + LD E+ LL GP D A VT+ AG+ G + W L MY+R+ ++ GY+
Sbjct: 49 LALQQRLDGLELEILLSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKV 108
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSAT+ F E AFGYL E G H L+ + S + A VDV+
Sbjct: 109 ETMDFLPGDEAGIKSATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVI 168
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P +E + ++QI EDL + + G+ + A I H+PTGI V+ +
Sbjct: 169 PEVMEDNAEIQIPPEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQS 222
>gi|383788715|ref|YP_005473284.1| peptide chain release factor 2 [Caldisericum exile AZM16c01]
gi|381364352|dbj|BAL81181.1| peptide chain release factor 2 [Caldisericum exile AZM16c01]
Length = 363
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K A D +KL+ ++E+ + L P D A V+ +G+ G+ + W E LL MY+R+
Sbjct: 94 KEAQEVLFDANKLVKEFEIERFLSEPYDDLNAFVSFSSGAGGVDAQDWTEMLLKMYLRFF 153
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+K+G+ +++D+ + G+KSAT+ + E+A+G L GE+G H L+ + + +
Sbjct: 154 EKKGFEAKIIDQTVGEEAGIKSATVYVKGEFAYGLLKGESGVHRLVRISPFDANRRRHTS 213
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
A V+VVP E D++I ++DL +F + G+ + A I HIPTGI
Sbjct: 214 FALVEVVPDLGEVE-DIEIDEKDLKIEIFRASGHGGQNVQKVETAVRITHIPTGIT 268
>gi|297171258|gb|ADI22265.1| protein chain release factor B [uncultured Gemmatimonadales
bacterium HF0200_36I24]
gi|297171357|gb|ADI22361.1| protein chain release factor B [uncultured nuHF2 cluster bacterium
HF0500_02A10]
Length = 334
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 15/233 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALK---DLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WD+ K++EV+ A+S ++ N +K DL K E I L E E D L
Sbjct: 6 FWDNQDKASEVI---AESNRLKNWVKPWHDLNTKVSELTEIRDLLEHED-DEDLTHELIS 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ E+ +L+GP+D GA +T+ G+ G+ + WAE L MY RWA+ GY
Sbjct: 62 EVDKIEGPIEDLELRTMLQGPDDHRGAILTVHPGAGGLESQDWAEMLTRMYSRWAENHGY 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V+D G+KSAT+E +A+GYL E G H L+ F S H + A V
Sbjct: 122 DLNVLDMQPGDEAGIKSATLEVVGGHAYGYLKAEKGIHRLVRISPFDAQSRRH-TSFASV 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ PL ++ +++I++ DL F + G+ + A I HIPTGIAV
Sbjct: 181 FIYPL-VDDEIEIEIAESDLRVDTFRASGAGGQHVNKTDSAIRITHIPTGIAV 232
>gi|57234653|ref|YP_181313.1| peptide chain release factor 2, programmed frameshift, partial
[Dehalococcoides ethenogenes 195]
gi|57225101|gb|AAW40158.1| peptide chain release factor 2, programmed frameshift
[Dehalococcoides ethenogenes 195]
Length = 362
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 9/234 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + + + KLA + +V + L + + + +L + D L R
Sbjct: 39 DFWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVND---LLELFALTHEDPSLGNEIEREV 95
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 96 NTLTAEIDTLEVGLAFSGQYDSRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 155
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+V+
Sbjct: 156 EVLDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEVM 215
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E S D+ I ED+ +F S G+ A + HIP+GI V T
Sbjct: 216 P-EAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQT 268
>gi|428174401|gb|EKX43297.1| hypothetical protein GUITHDRAFT_73206, partial [Guillardia theta
CCMP2712]
Length = 225
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 6 NLWDDPTKSNEVL-VKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D + + L + S + D++ ++ ++ +M +D L K A
Sbjct: 23 DFWNDAANAQKSLQARTGGSGAHGQVVTDVQELSDAKAKLSMNEKMSDLDGELVKEAETN 82
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ + L+++E+S+LL GP D G ++I+AG+ G WAE LL MY +WA+K+GY+
Sbjct: 83 IAGLEEDLERWELSQLLSGPFDHRGCLLSIQAGAGGTDAMDWAEMLLRMYTKWAEKKGYK 142
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
++VD + KSATIE + YA+GYL GE GAH L+ N + + A +DV
Sbjct: 143 NQLVDHMPGEEAATKSATIEIDAPYAYGYLRGEKGAHRLVRISPFNAQAKRQTSFAGIDV 202
Query: 183 VPLF-----LETSP-DLQIS 196
+PL +E P DL+I+
Sbjct: 203 MPLLDEDVTMEIDPKDLEIT 222
>gi|379058079|ref|ZP_09848605.1| peptide chain release factor 2 [Serinicoccus profundi MCCC 1A05965]
Length = 370
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 29/241 (12%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI---AQLAEMEAI--------D 54
+LWDD + ++ KV +AL R KAE K++ A++ ++EA+ D
Sbjct: 43 DLWDD----------VDNAQKVTSALS--RAKAEHDKVVGMDARIDDLEALVELGREEND 90
Query: 55 YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
A R + K + E+ LL G D+ A VTI++G+ G+ +AE L+ MY
Sbjct: 91 ADTLVEAERELAGLKKAVQLLEVRTLLNGDYDIREAVVTIRSGAGGVDAADFAEMLMRMY 150
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
+RWA++ Y V+D + G+KSAT E + YAFG L+ E G H L+ +
Sbjct: 151 LRWAERHDYPTSVLDTSYAEEAGLKSATFEVKVPYAFGTLAVEAGTHRLVRISPFDNQGR 210
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + A V+VVPL +E++ ++I + DL +F S G+ + A + H+PTG
Sbjct: 211 RQTSFAAVEVVPL-IESTDTIEIPEGDLKIDVFRSSGPGGQSVNTTDSAVRMTHLPTGTV 269
Query: 230 V 230
V
Sbjct: 270 V 270
>gi|291445100|ref|ZP_06584490.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
15998]
gi|291348047|gb|EFE74951.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL
15998]
Length = 368
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFELAEAEG-DADAQAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|269218746|ref|ZP_06162600.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269211857|gb|EEZ78197.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 378
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 11/235 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-----IDYGLFKR 60
+LWDD K+ V KL+ + ++ + + ++ + + ++A+ EA L+
Sbjct: 43 DLWDDQDKAQSVTSKLSHAQAELDKINAMSAALDDLETLKEMADEEAGSDPETAAELYSD 102
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
R V + + E+ LL G D A VTI++G+ G+ +A+ L MY+RWA++
Sbjct: 103 LERELGQVGADMSELEIRTLLSGKYDEREAVVTIRSGAGGVDAADFAQILQRMYLRWAER 162
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY +V+D + G+KS T E YA+G LS E G H L+ + + + A
Sbjct: 163 RGYSAKVLDTSYAEEAGIKSTTFEVSAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFA 222
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+PL +E + + + + D+ +F S G+ + A I HIPTGI V
Sbjct: 223 AVEVIPL-IEQTDHIDVPEADIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVV 276
>gi|453077037|ref|ZP_21979799.1| peptide chain release factor 2 [Rhodococcus triatomae BKS 15-14]
gi|452760158|gb|EME18500.1| peptide chain release factor 2 [Rhodococcus triatomae BKS 15-14]
Length = 367
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 12/232 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW++ + +V +L+ + + +++LR + ++ +++ +LAE + + A R
Sbjct: 43 DLWNNQEHAQQVTSQLSHAQAELRRVEELRSRLDDMEVLYELAEEDGAEAVADADAERHK 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L D++ + E+ +L G D A V I++G+ G+ WAE L+ MY+RWA+K GY
Sbjct: 103 LREDIAAM----EVKTMLSGDYDERDALVNIRSGAGGVDAADWAEMLMRMYIRWAEKHGY 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + YA+G LS E G H L+ + + + A V+
Sbjct: 159 GVEVYDTSYAEEAGIKSATFAVKAPYAYGTLSIEMGTHRLVRISPFDNQGRRQTSFAEVE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 VLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|117928939|ref|YP_873490.1| peptide chain release factor 2 [Acidothermus cellulolyticus 11B]
gi|166223620|sp|A0LVP4.1|RF2_ACIC1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|117649402|gb|ABK53504.1| bacterial peptide chain release factor 2 (bRF-2) [Acidothermus
cellulolyticus 11B]
Length = 369
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+DP + V +L+ + ++ LR + ++ ++ +LAE E D A
Sbjct: 45 LWNDPENAQRVTSRLSFLQAEIRRVEGLRKRLDDVMVLFELAEAEN-DEPTRTEALAEMA 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K +D E+ LL G D A VTI + + G+ WA+ LL MY+RWA++ GY
Sbjct: 104 ALQKAIDDLEVRTLLSGEYDAREALVTINSQAGGVDAADWAQMLLRMYLRWAERHGYPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + +G L+ E G H L+ + + + A VDVVP
Sbjct: 164 ILDTSYAEEAGIKSATFIVHAPFTYGLLAAEHGTHRLVRISPFDNQARRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E + + I ++++ +F S G+ + A I H+PTGI V
Sbjct: 224 V-VEKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|322420980|ref|YP_004200203.1| peptide chain release factor 2 [Geobacter sp. M18]
gi|320127367|gb|ADW14927.1| Peptide chain release factor 2 [Geobacter sp. M18]
Length = 371
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + +VL K V A ++L +A + + + +L E D +
Sbjct: 43 DFWNDAENAQKVLKARTAMEKDVTAWENLDRQARDIRELIELGSEEE-DEATLAEVAAMN 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + Q E ++L GP+D GA V+I +G+ G + WAE LL MY+R+ +K+G+R
Sbjct: 102 AELENGVSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDWAEMLLRMYLRYCEKKGWRT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D G+K T E+A+GYL + G H L+ + S + A V V
Sbjct: 162 EITDYQEGDGAGIKGVTFAATGEFAYGYLKADAGIHRLVRISPFDSSARRHTSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E +++I++ DL + S G+ + A I H+PTGI V
Sbjct: 222 PVIEEEDIEVKIAESDLRIDTYRSSGAGGQHVNTTDSAIRITHLPTGIVV 271
>gi|374611917|ref|ZP_09684700.1| peptide chain release factor 2 [Mycobacterium tusciae JS617]
gi|373548561|gb|EHP75252.1| peptide chain release factor 2 [Mycobacterium tusciae JS617]
Length = 371
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD +++ +V +L+ + + +++LR + ++ ++ ++A E G + A
Sbjct: 43 NLWDDQSRAQKVTSELSHTQGELRRVEELRQRLDDLPVLYEMA-AEEEGSGAAEAQAEAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL L+ E+ LL G D A + I++G+ G+ WAE L+ MYVRWA++
Sbjct: 102 TELKKLREDLEAMEVRTLLSGEYDAREALLNIRSGAGGVDAADWAEMLMRMYVRWAEQHN 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-TETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|269792424|ref|YP_003317328.1| peptide chain release factor 2 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100059|gb|ACZ19046.1| bacterial peptide chain release factor 2 (bRF- 2)
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 374
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 7/222 (3%)
Query: 14 SNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLD 73
S EV +L+ + + L + E+ + +A+L + D L + Y + ++ + L+
Sbjct: 51 STEVARELSQLQQRRESFSALEREMEDLETLAELLQA-GEDEDLSREFYDRAAEMERRLE 109
Query: 74 QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCC 133
+ ++ LL D A V I AG+ G+ + WAE L MYVRWA++ G++ RV+D+
Sbjct: 110 RTQVLTLLDEEYDRSDAIVGIHAGAGGLDSQDWAEMLYRMYVRWAERNGFKVRVLDELPD 169
Query: 134 KNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSP 191
+ G+KS T + EYA+GYL GE G H L+ + + + A V+V+P+ L
Sbjct: 170 QEAGIKSVTFQVSGEYAYGYLKGERGVHRLVRISPFDAAKRRHTSFASVEVMPV-LPDDV 228
Query: 192 DLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+++I ED+ F + G+ ++ A I HIPTGI V
Sbjct: 229 EIEIRPEDIKMDTFRASGAGGQYVNMTDSAVRITHIPTGIVV 270
>gi|443627028|ref|ZP_21111430.1| putative Peptide chain release factor 2 [Streptomyces
viridochromogenes Tue57]
gi|443339445|gb|ELS53685.1| putative Peptide chain release factor 2 [Streptomyces
viridochromogenes Tue57]
Length = 368
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRSRIDDLAVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAERLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S ++I + DL ++ S G+ + A I H+PTGI V
Sbjct: 223 PV-VEQSDHVEIDESDLRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|397690960|ref|YP_006528214.1| peptide chain release factor 2 [Melioribacter roseus P3M]
gi|395812452|gb|AFN75201.1| peptide chain release factor 2 [Melioribacter roseus P3M]
Length = 329
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 7/228 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D ++ +L K V+ +L+ K + + +L + E D +
Sbjct: 6 DFWSDQKRAQSLLQKSKSLQNWVDLWNELKEKVDHIEEFVELVKAEE-DESFITEIDKEL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ KL + E+ +L G +D + +TI +G+ G + W+E L+ MY+RW ++ GY+
Sbjct: 65 TEAEKLYSELELKSMLSGKDDDKNCILTIHSGAGGTEAQDWSEMLMRMYMRWGEQNGYKM 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KSATIE E YA+GYL ETG H L+ + + + A V V+
Sbjct: 125 SIIDYLEGDGAGIKSATIEVEGLYAYGYLKAETGVHRLVRISPFDANKRRHTSFASVFVI 184
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
P ++ S D++I+ DL + S G+ + + A I HIPTG+
Sbjct: 185 PE-VDDSIDIEINPADLRIDTYRSGGKGGQNVNKVETAVRITHIPTGV 231
>gi|291453772|ref|ZP_06593162.1| peptide chain release factor 2 [Streptomyces albus J1074]
gi|359149446|ref|ZP_09182456.1| peptide chain release factor 2 [Streptomyces sp. S4]
gi|421740172|ref|ZP_16178444.1| bacterial peptide chain release factor 2 (bRF-2) [Streptomyces sp.
SM8]
gi|291356721|gb|EFE83623.1| peptide chain release factor 2 [Streptomyces albus J1074]
gi|406691412|gb|EKC95161.1| bacterial peptide chain release factor 2 (bRF-2) [Streptomyces sp.
SM8]
Length = 371
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTEALRSRLDDLGVLFELAEAED-DADTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ASVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|73748409|ref|YP_307648.1| peptide chain release factor 2 [Dehalococcoides sp. CBDB1]
gi|452203414|ref|YP_007483547.1| peptide chain release factor 2 [Dehalococcoides mccartyi DCMB5]
gi|452204850|ref|YP_007484979.1| peptide chain release factor 2 [Dehalococcoides mccartyi BTF08]
gi|73660125|emb|CAI82732.1| peptide chain release factor 2 [Dehalococcoides sp. CBDB1]
gi|452110473|gb|AGG06205.1| peptide chain release factor 2 [Dehalococcoides mccartyi DCMB5]
gi|452111906|gb|AGG07637.1| peptide chain release factor 2 [Dehalococcoides mccartyi BTF08]
Length = 356
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 9/236 (3%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D + + + KLA + + + L + + + +LA + D L
Sbjct: 32 NPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRIND---LTELAVLSREDPSLSNEIEH 88
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ LD E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 89 EISGLTAELDSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGF 148
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+
Sbjct: 149 GMEILDQSLGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVE 208
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
++P E S D+ I ED+ +F S G+ A + HIP+GI V T
Sbjct: 209 IMPE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQT 263
>gi|227502940|ref|ZP_03932989.1| peptide chain release factor 2 [Corynebacterium accolens ATCC
49725]
gi|227076362|gb|EEI14325.1| peptide chain release factor 2 [Corynebacterium accolens ATCC
49725]
Length = 367
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 10/230 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + ++ ++ +LAE E G A
Sbjct: 43 SLWDDPEHAQKVTSELSSAQAKVRKLESLRGRLDDMPVMYELAEEE----GTVSVADEDL 98
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA K ++
Sbjct: 99 AELESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAGKHDHKV 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 159 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRLSPFDNQGRRQTSFAEVEVL 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + + D ++ ++ S G+ + A + HIPTGI V
Sbjct: 219 PV-VEQTDHIDVPDNEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 267
>gi|220932479|ref|YP_002509387.1| peptide chain release factor 2 [Halothermothrix orenii H 168]
gi|219993789|gb|ACL70392.1| bacterial peptide chain release factor 2 (bRF-2) [Halothermothrix
orenii H 168]
Length = 331
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 18/236 (7%)
Query: 7 LWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
LWDD K+ E+ K + D +K + L +LR EEA+++ +LAE + + L+
Sbjct: 6 LWDDNKKAREITRKSKVVKDRIKSLKKLDELR---EEAEVMIELAEEDETNRELWSEVED 62
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + +D+ E+ L G D A ++I G+ G + WA+ LL MYVRWA+ GY
Sbjct: 63 YINSLEEKIDKMELKFRLNGEYDDCNAILSIHPGAGGTESQDWADMLLRMYVRWAESHGY 122
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D G+K T+ EY++GYL GE G H L+ + S + A V+
Sbjct: 123 KVETLDYLPGDEAGIKRVTLLISGEYSYGYLKGEKGVHRLVRISPFDSSGRRHTSFASVN 182
Query: 182 VVP------LFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P + DL+I + + G+ + A I HIPTGI V+
Sbjct: 183 VIPEIDDDIEVDIDTGDLKIE----TYRASGAGGQHVNKTDSAVRITHIPTGIVVQ 234
>gi|306835540|ref|ZP_07468554.1| peptide chain release factor RF2 [Corynebacterium accolens ATCC
49726]
gi|304568597|gb|EFM44148.1| peptide chain release factor RF2 [Corynebacterium accolens ATCC
49726]
Length = 370
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 10/230 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + V L+ LR + ++ ++ +LAE E G A
Sbjct: 46 SLWDDPEHAQKVTSELSSAQAKVRKLESLRGRLDDMPVMYELAEEE----GTVSVADEDL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA K ++
Sbjct: 102 AELESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWAEMLMRMYTRWAGKHDHKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 162 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRLSPFDNQGRRQTSFAEVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + + D ++ ++ S G+ + A + HIPTGI V
Sbjct: 222 PV-VEQTDHIDVPDNEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|242041179|ref|XP_002467984.1| hypothetical protein SORBIDRAFT_01g037550 [Sorghum bicolor]
gi|241921838|gb|EER94982.1| hypothetical protein SORBIDRAFT_01g037550 [Sorghum bicolor]
Length = 467
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ + E + +LA E D L + RA
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLAREEN-DNELEMESMRAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + + E++ LL G ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 197 ADMRRSAKEKELNALLSGDNDSCPCFIEVQAGAGGTESMDWAAMVMNMYRSWAQRRGYTV 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMPGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+P+ + + QI D DL F S G+ + + A I HIPTGI+
Sbjct: 316 IPILGDAASRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGIS 365
>gi|354558919|ref|ZP_08978172.1| Peptide chain release factor 2 [Desulfitobacterium metallireducens
DSM 15288]
gi|353545243|gb|EHC14695.1| Peptide chain release factor 2 [Desulfitobacterium metallireducens
DSM 15288]
Length = 332
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP + +V+ +L V +DL K E+ ++ +LA E D L
Sbjct: 7 DFWDDPDSAQKVMQELGFQQAKVKMYEDLHAKFEDLTVLYELATEEE-DNSLETEVETEV 65
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + ++ E+ LL P D +T+ AG+ G + W L MYVRW ++ GY+
Sbjct: 66 KELQGIFEKLELEILLSNPYDQNNTILTLHAGAGGTEAQDWVSMLYRMYVRWGERRGYKV 125
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSATI E A+GY E G H L+ + + + A VDV+
Sbjct: 126 ETMDLLPGDEAGIKSATISIAGENAYGYAKSEKGVHRLVRISPFDAAGRRHTSFASVDVI 185
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E ++ I+ ++L + + G+ + A I H+PTGI V
Sbjct: 186 PEVEEDDSEIMINPDELKVDTYRASGAGGQHINKTSSAVRITHLPTGIVV 235
>gi|365156912|ref|ZP_09353199.1| peptide chain release factor 2 [Bacillus smithii 7_3_47FAA]
gi|363626379|gb|EHL77369.1| peptide chain release factor 2 [Bacillus smithii 7_3_47FAA]
Length = 327
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D K+ + ++ A+ LK +VN KDL E L L + E D L
Sbjct: 5 DFWNDQQKA-QAIINEANGLKDLVNEYKDLLETQENLDLTYDLVKEEN-DTELKAELESE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D +K L++YE+ LL P D A + + G+ G + W LL MY RWA+K+GY+
Sbjct: 63 LEDFTKRLNRYELELLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKKGYK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P F E +++I +EDL + S G+ + A I H+PTGI V
Sbjct: 182 VMPEFNE-EVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVV 232
>gi|422012230|ref|ZP_16358943.1| peptide chain release factor 2 [Actinomyces georgiae F0490]
gi|394759088|gb|EJF41890.1| peptide chain release factor 2 [Actinomyces georgiae F0490]
Length = 372
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRA 64
+LWDDP ++ EV L+ ++ + + + ++ + + ++A E + A
Sbjct: 43 DLWDDPARAQEVTSALSHRQSELDRVVRMGERIDDLEAMVEMAGEDPDEAEEILAEAAAD 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ K + E+ LL G D A +TI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 LEALKKDVSDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHGYP 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L+ + + + A V+V
Sbjct: 163 TKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+PL +E++ ++I + +L +F S G+ + A + HIPTGI V
Sbjct: 223 IPL-IESTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 272
>gi|300857995|ref|YP_003782978.1| peptide chain release factor RF-2 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288161|ref|YP_005122702.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 3/99-5]
gi|384504178|ref|YP_005680848.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 1002]
gi|384506270|ref|YP_005682939.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis C231]
gi|384508358|ref|YP_005685026.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis I19]
gi|384510450|ref|YP_005690028.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis PAT10]
gi|385807033|ref|YP_005843430.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 267]
gi|387136117|ref|YP_005692097.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300685449|gb|ADK28371.1| peptide chain release factor RF-2 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205723|gb|ADL10065.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis C231]
gi|302330275|gb|ADL20469.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 1002]
gi|308275958|gb|ADO25857.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis I19]
gi|341824389|gb|AEK91910.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis PAT10]
gi|348606562|gb|AEP69835.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371575450|gb|AEX39053.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383804426|gb|AFH51505.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 267]
Length = 366
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E D L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDDTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|124024426|ref|YP_001018733.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9303]
gi|123964712|gb|ABM79468.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9303]
Length = 319
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 7/208 (3%)
Query: 31 LKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGA 90
+K R +A+ +L ++E D + A + + LD++E+ +LL G D +GA
Sbjct: 14 IKLWRSAVNDAQATLELYDLEPDDE-MLSEAQSGLQQLRQGLDRWELERLLSGEYDKKGA 72
Query: 91 SVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYA 150
++I AG+ G + WA+ LL MY RWA+ R V + + G+KSAT+E E YA
Sbjct: 73 VLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMRVTVDELSEGEEAGIKSATVEIEGRYA 132
Query: 151 FGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFS---SP 205
+GYL E G H L+ N + + + A V+++P ++ +L I ++DL + S
Sbjct: 133 YGYLRNEKGTHRLVRISPFNANGKRQTSFAGVEIMP-KIDQEVELDIPEKDLEVTTSRSG 191
Query: 206 SLPGERQSIAKPAACIQHIPTGIAVRGT 233
G+ + + A I HIPTG+AVR T
Sbjct: 192 GAGGQNVNKVETAVRILHIPTGLAVRCT 219
>gi|331270416|ref|YP_004396908.1| peptide chain release factor 2 [Clostridium botulinum BKT015925]
gi|329126966|gb|AEB76911.1| peptide chain release factor 2 [Clostridium botulinum BKT015925]
Length = 327
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 7/234 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD K+ EV + ++ + + + E+ K++ +++ +E D +
Sbjct: 5 NFWDDINKAQEVTQEAKGLKDRIDKYSNTKNRLEDLKILIEMS-IEEDDESSVEEILNEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++D++ + LL G D A V++ AG+ G + W E LL MY RW++ +GY+
Sbjct: 64 KEIQIIIDEFRVQILLSGEYDKNNAIVSLHAGAGGTDAQDWTEMLLRMYTRWSETKGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D G+KSA+++ E+A+GYL E G H L+ N + + + A ++++
Sbjct: 124 ETLDILPGDEAGIKSASLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEIL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E S D++I +DL + + G+ + A I HIPTGI V+ +
Sbjct: 184 PELTE-SQDIEIKSDDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQS 236
>gi|168210100|ref|ZP_02635725.1| peptide chain release factor 2 [Clostridium perfringens B str. ATCC
3626]
gi|170711768|gb|EDT23950.1| peptide chain release factor 2 [Clostridium perfringens B str. ATCC
3626]
Length = 323
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY+RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYIRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 232
>gi|51891274|ref|YP_073965.1| peptide chain release factor 2 [Symbiobacterium thermophilum IAM
14863]
gi|51854963|dbj|BAD39121.1| peptide chain release factor 2 [Symbiobacterium thermophilum IAM
14863]
Length = 308
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 6/208 (2%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+ L+ R + ++ +++ LAE EA D + A + + + + Q+E+ LL G D
Sbjct: 1 MEQLESFRRRLDDLEVMIDLAE-EASDAEMAAEARAEADALEEQVRQFELQVLLNGKYDA 59
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
A +TI AG+ G + WAE LL MYVRWA++ G++ +D+ G+KS TI
Sbjct: 60 YNAILTIHAGAGGTEAQDWAEMLLRMYVRWAERRGFKVEELDRLDGDEAGIKSVTIAVRG 119
Query: 148 EYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LF 202
YA+G+L E G H L+ + S + A V+V+P + D++I EDL F
Sbjct: 120 PYAYGFLRPEMGVHRLVRISPFDASGRRHTSFAAVEVMPEIEDDVDDIEIRPEDLRIDTF 179
Query: 203 SSPSLPGERQSIAKPAACIQHIPTGIAV 230
S G+ + + A I H+PTGI V
Sbjct: 180 RSSGAGGQHVNKTESAVRITHLPTGIVV 207
>gi|196231602|ref|ZP_03130460.1| peptide chain release factor 2 [Chthoniobacter flavus Ellin428]
gi|196224455|gb|EDY18967.1| peptide chain release factor 2 [Chthoniobacter flavus Ellin428]
Length = 350
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 7/228 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W + ++ + + +++ + L L + E+ ++ +LA EA D K +
Sbjct: 5 DFWANKERAQKNVEEVSTLRNKIGPLLTLDRQIEDLPVLIELAR-EANDETSVKEVEKEY 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L ++E+ LL GPND A +TI +G+ G WA+ LL MY RW ++ G++
Sbjct: 64 GVIQNGLAEFELKMLLNGPNDRYNAFLTINSGAGGTESCDWADMLLRMYQRWIERHGFKS 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T++ EYAFGYL+ E G H L+ + + + A VDVV
Sbjct: 124 EVMDIQLGEEAGIKSCTLKVAGEYAFGYLATERGVHRLVRISPFDANKRRHTSFAGVDVV 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
P E++P ++I++ D+ + S G+ + + A I+HIPTGI
Sbjct: 184 PELPESAP-IEINEADIEVDTYRSGGKGGQNVNKVETAVRIRHIPTGI 230
>gi|326330854|ref|ZP_08197155.1| peptide chain release factor 2 [Nocardioidaceae bacterium Broad-1]
gi|325951384|gb|EGD43423.1| peptide chain release factor 2 [Nocardioidaceae bacterium Broad-1]
Length = 372
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L+ +N +L + E+ +L+ ++A+ E D +
Sbjct: 44 DLWDDQDNATRVTGRLSLLQGELNKFTELSSRIEDLELMVEMAQEEG-DADTLAESEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K ++ E+ LL G D A VTI++G+ G+ +AE L+ MYVRWA++ Y
Sbjct: 103 GRVKKAVESLEIRTLLSGEYDSREALVTIRSGAGGVDAADFAEMLMRMYVRWAERNKYPV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+VV
Sbjct: 163 EVFDTSYAEEAGLKSATFAIHAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ LE + +++I + D+ ++ S G+ + A + HIPTG V
Sbjct: 223 PV-LEQTDEIEIDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGTVV 271
>gi|348170778|ref|ZP_08877672.1| putative peptide chain release factor 2 [Saccharopolyspora spinosa
NRRL 18395]
Length = 368
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L + + +LR + E+ +++ +L+E E GL + A
Sbjct: 43 DLWDDVEHAQRVSSQLVHRQAELRKITELRQRLEDLEVLYELSEDEGDSAGLSE-ADEER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ E+ LL G D A VTI+A + G+ +AE L+ MY+RWA++ Y
Sbjct: 102 DRLKKDLEALEVRTLLSGEYDQREAMVTIRAEAGGVDAADFAEMLMRMYLRWAERHSYPA 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I ++D+ +F S G+ + A I HIPTGI V
Sbjct: 222 PVVEETD-HVDIPEKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVV 270
>gi|28493165|ref|NP_787326.1| peptide chain release factor 2 [Tropheryma whipplei str. Twist]
gi|28572722|ref|NP_789502.1| peptide chain release factor 2 [Tropheryma whipplei TW08/27]
gi|28410855|emb|CAD67240.1| peptide chain release factor 2 [Tropheryma whipplei TW08/27]
gi|28476205|gb|AAO44295.1| peptide chain release factor RF-2 [Tropheryma whipplei str. Twist]
Length = 376
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 7/234 (2%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
V + +LW P ++ ++ +L+ + ++ L +L + +E +++ L E E D GL
Sbjct: 40 VSDPDLWTTPDRAQQIARELSITKAQLDRLTNLEAQLDEMRVLVTLLENEH-DAGLLDEG 98
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R + + + + + +L D A +TI+AG+ GI +A+ LL MY+RWA K
Sbjct: 99 SRKAKLLLEEANHLLIQNMLNNEYDCYPAVLTIRAGAGGIDAADFAQMLLRMYIRWAQKH 158
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
V+D + G++SAT+ + +AFG L E+G H L+ N + + A
Sbjct: 159 SSEAIVMDISYAEEAGIRSATLRIDLPFAFGKLHQESGTHRLVRISPFNAAGKRHTSFAA 218
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+PL E S ++I+++++ +F S G+ + A I H+PTGI V
Sbjct: 219 VEVIPLLEEVSS-IEITNDEIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 271
>gi|342216846|ref|ZP_08709493.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587736|gb|EGS31136.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 343
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + +++ K + ++ L EEA+++ L E E D+ + + +
Sbjct: 47 FWDDSQAAQKLIKKQNQYKEKIDTYDQLMEDIEEAEVMIDLMEEEE-DFAFYDQFKESVQ 105
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ ++++ LL G D A V+I AG+ G + WA+ L MY R+ DK+G++
Sbjct: 106 DIQDRAANFKLTTLLTGEYDDNAAIVSIHAGAGGTEAQDWADMLYRMYRRYGDKKGFKVE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T+ +A+GYL E G H L+ + + + + VDV P
Sbjct: 166 TLDLLTEDEAGIKSVTMRMAGPHAYGYLKAEKGVHRLVRISPFDAAKKRHTSFSSVDVYP 225
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L+ ++ I DEDL + S G+ + A I HIPTGI V+
Sbjct: 226 E-LDEDIEVDIKDEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 274
>gi|120402908|ref|YP_952737.1| peptide chain release factor 2 [Mycobacterium vanbaalenii PYR-1]
gi|166225112|sp|A1T6D1.1|RF2_MYCVP RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|119955726|gb|ABM12731.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
vanbaalenii PYR-1]
Length = 368
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD ++ +V L+ + + +++LR + E+ ++ +LA E G A
Sbjct: 43 QLWDDQARAQKVTSDLSHAQGELRRIEELRGRLEDLPVLYELAAEE----GGSDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 99 AELTKLREDIEAMEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHK 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 159 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQNRRQTSFADV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ ET+ ++I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 EVLPV-TETTDHIEIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|121996859|ref|YP_001001646.1| peptide chain release factor 2 [Halorhodospira halophila SL1]
gi|121588264|gb|ABM60844.1| bacterial peptide chain release factor 2 (bRF-2) [Halorhodospira
halophila SL1]
Length = 291
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 7/170 (4%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
V+ ++ E ++ G D A + I+AGS G + WAE LL MY+RWA+ G+ V
Sbjct: 31 VAGQVETLEFRRMFSGEMDTSNAFLDIQAGSGGTEAQDWAEMLLRMYLRWAEARGFETEV 90
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVP 184
++ + GVKSATI+ EYAFG+L ETG H L+ F +G H + + V V P
Sbjct: 91 IEVTAGQEAGVKSATIKVSGEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSVFVSP 149
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E + D++I DL +F + G+ + + A I H PTGI V+
Sbjct: 150 EIDEENVDIEIDPSDLRVDVFRASGAGGQHVNTTESAVRITHEPTGIVVQ 199
>gi|357590811|ref|ZP_09129477.1| peptide chain release factor 2 [Corynebacterium nuruki S6-4]
Length = 374
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE-MEAIDYGLFKRAYRA 64
+LWDDP + +V KL+ + ++ LR + ++ ++ ++AE E D K A
Sbjct: 43 SLWDDPDHAQQVTSKLSHVQGRLKKVRGLRSRLDDLPVMYEMAEESEGEDAAEAKELADA 102
Query: 65 SL-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L ++ + +D E++ +L G D A V I++ + G+ WAE L+ MY RWA+K G+
Sbjct: 103 ELAELKEAVDSLEVTTMLSGEYDDREAVVNIRSAAGGVDAADWAEMLMRMYTRWAEKHGH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ V D + G+KSAT +Y +G LS E G H L+ + + + A V+
Sbjct: 163 KVEVYDISYAEEAGIKSATFVVHGDYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ +E S + I + ++ ++ S G+ + A + HIPTGI V
Sbjct: 223 VLPV-VEQSDHVDIDENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|78187873|ref|YP_375916.1| peptide chain release factor 2 [Chlorobium luteolum DSM 273]
gi|78167775|gb|ABB24873.1| bacterial peptide chain release factor 2 (bRF-2) [Chlorobium
luteolum DSM 273]
Length = 363
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 15/236 (6%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N W+D ++ VL +L ++ V + L KAE + +LA + ++ F+R
Sbjct: 40 NPEFWNDQKAAHAVLKELNENRSWVEGYEKLAGKAESCR--DELAIADELEDESFERELT 97
Query: 64 ASLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
AS+D + + + E +L G +D A +TI AG+ G + WAE L MY+RWA+++G
Sbjct: 98 ASIDAIEQEIAAIEFKNMLSGKDDPGNAIITIHAGAGGTEAQDWAEMLYRMYMRWAERKG 157
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ D G+K+AT+E + YA+GYL E G H L+ F + + H + A
Sbjct: 158 FKVYTDDYQEGDGAGIKTATLEIQGPYAYGYLKAENGVHRLVRVSPFDSNARRH-TSFAS 216
Query: 180 VDVVPLFLETSPDLQIS--DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V P E PD++I EDL F S G+ + + A I+HIP+GI V
Sbjct: 217 VYTYP---EAPPDVEIEVRKEDLELSTFRSGGKGGQNVNKVETAVRIKHIPSGIVV 269
>gi|242279065|ref|YP_002991194.1| hypothetical protein Desal_1593 [Desulfovibrio salexigens DSM 2638]
gi|242121959|gb|ACS79655.1| hypothetical protein Desal_1593 [Desulfovibrio salexigens DSM 2638]
Length = 372
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 10/171 (5%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
++KL++Q E++ LL GP D A + I G+ GI + WAE LL MY+RWADK ++
Sbjct: 106 LAKLVEQTELAALLSGPEDKSTAILEIHPGAGGIESQDWAEMLLRMYLRWADKRNWKTSY 165
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+D G+KS T+ E YA+G+L GE G H LI + S + A VDV P
Sbjct: 166 LDYQPDDEAGIKSVTLRIEGLYAYGFLKGEAGIHRLIRISPFDASGRRHTSFASVDVYP- 224
Query: 186 FLETSPDLQI--SDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E S D++I DED+ +F + G+ + A I H+PT I V+
Sbjct: 225 --EISQDIEIEVKDEDIRLDVFRASGPGGQHVNKTNSAVRITHLPTNIVVQ 273
>gi|297562654|ref|YP_003681628.1| peptide chain release factor 2 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847102|gb|ADH69122.1| peptide chain release factor 2 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 372
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW D + +V +L+ +VN + + + ++ ++ +LAE E D A R
Sbjct: 45 LWADQDNAQKVTRQLSSLESMVNKINGIGQRLDDLGVLYELAEAED-DADTRVEADRELD 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + + E+ LL GP+D A VTI + + G+ WA+ L MY+RWA++ GY
Sbjct: 104 QLRKEIGELEVRTLLNGPHDEREAIVTINSQAGGVDAADWAQMLQRMYLRWAERHGYPTD 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V + + G+KS + + +A+G L GE G H L+ + + + A VDVVP
Sbjct: 164 VYETSYAEEAGIKSTSFAVKTPFAYGTLRGEHGTHRLVRISPFDNQNRRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E S ++I D DL ++ S G+ + A I H+PTGI V
Sbjct: 224 V-VEQSDHIEIDDGDLRVDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|147669189|ref|YP_001214007.1| peptide chain release factor 2 [Dehalococcoides sp. BAV1]
gi|146270137|gb|ABQ17129.1| bacterial peptide chain release factor 2 (bRF-2) [Dehalococcoides
sp. BAV1]
Length = 356
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 9/236 (3%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D + + + KLA + + + L + + + +LA + D L
Sbjct: 32 NPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRIND---LTELAVLSREDPSLSNEIEH 88
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ LD E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 89 EISGLTAELDSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGF 148
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+
Sbjct: 149 GMEILDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVE 208
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
++P E S D+ I ED+ +F S G+ A + HIP+GI V T
Sbjct: 209 IMPE-AEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQT 263
>gi|375089821|ref|ZP_09736146.1| peptide chain release factor 2 [Facklamia languida CCUG 37842]
gi|374566668|gb|EHR37907.1| peptide chain release factor 2 [Facklamia languida CCUG 37842]
Length = 355
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 7/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ V+ D + +N + K E+ +++ +L E E D L++
Sbjct: 29 FWDDQQKAQAVIKTSNDLKERLNTFFQIEQKLEDMQVVVELYE-ETEDQSLWEELQTLQT 87
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
S+ L+ Y++S LL +D A + I G+ G + W E LL MY RWA ++GY+ +
Sbjct: 88 TFSQELESYQLSLLLSQAHDSANAIIEIHPGAGGTESQDWGEMLLRMYDRWAHQKGYQVK 147
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVVP 184
V+D + G+KS T+E +G+L E G H LI P S T C +DV P
Sbjct: 148 VIDYQNGEEAGIKSVTLEVAGNKVYGHLKSEKGVHRLIRISPFDSNGKRHTSFCSIDVTP 207
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
L ++ S +++I+ +DL + + G+ + A I H+PTGI + +
Sbjct: 208 L-IDDSIEVEINPDDLRIDTYRASGAGGQHINKTSSAVRITHLPTGIVTQSQS 259
>gi|350569131|ref|ZP_08937528.1| peptide chain release factor RF2 [Propionibacterium avidum ATCC
25577]
gi|348660709|gb|EGY77416.1| peptide chain release factor RF2 [Propionibacterium avidum ATCC
25577]
Length = 368
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ K++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRSRIEDVKVLLEFA-ADGDDAESLAEATSEA 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY+
Sbjct: 103 AKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYKI 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVLDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 223 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|357399593|ref|YP_004911518.1| Peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386355632|ref|YP_006053878.1| peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337766002|emb|CCB74713.1| Peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365806140|gb|AEW94356.1| peptide chain release factor 2 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 368
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + E+ ++ +LAE E D A
Sbjct: 44 SLWDDPDNAQKITSRLSYLQGELRKTEALRSRIEDLAVLFELAEAEN-DADTRAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V + +D+ E+ LL G D A V+++A + G+ +AEQL MY+RWA++ GY
Sbjct: 103 VSVRQAVDEMEVRTLLSGEYDAREALVSVRAEAGGVDAADFAEQLQRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V++ + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVLETSYAEEAGIKSTTFAVKSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V
Sbjct: 223 PV-VEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|255926563|gb|ABG86573.2| peptide chain release factor 2 [Clostridium perfringens SM101]
Length = 364
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 47 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 ALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 165 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 225 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 273
>gi|194476812|ref|YP_002048991.1| peptide chain release factor 2 [Paulinella chromatophora]
gi|171191819|gb|ACB42781.1| peptide chain release factor 2 [Paulinella chromatophora]
Length = 354
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD ++ + + +L + + + L+ + +AK +L +E D +
Sbjct: 27 FWDLQDQAQKQMRQLDEVREQLEKLRQWQGTIADAKATLELYNIEP-DESMLNEGNEGMQ 85
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ +LL G D GA ++I AG+ G + WA LL MY RW++ G +
Sbjct: 86 RLKNNLDRWELERLLNGTYDKGGAVISINAGAGGTDAQDWARMLLRMYTRWSEDHGMKVN 145
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + + G+KS T E + YA+GYL E G H L+ N + + + A V+V+P
Sbjct: 146 ICEISEGEEAGIKSVTFEIDGSYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVMP 205
Query: 185 LFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
L D+ I D+DL + S G+ + + A I HIPTG+AVR T
Sbjct: 206 K-LNEDIDMFIPDKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 256
>gi|365174883|ref|ZP_09362321.1| peptide chain release factor 2 [Synergistes sp. 3_1_syn1]
gi|363613748|gb|EHL65253.1| peptide chain release factor 2 [Synergistes sp. 3_1_syn1]
Length = 350
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D L K Y S ++++ +++Y++ LL G D A +T+ AG+ G+ + WA+ L M
Sbjct: 73 DRELEKEFYSRSEELARTIEEYQILVLLDGEYDAGDAIMTVHAGAGGLDSQDWAQMLYRM 132
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGS 170
Y+RWA+ Y +++D+ + G+KS TI +YA+GYL GE G H L+ F +
Sbjct: 133 YMRWAEDHRYTVKLIDELRDQEAGIKSVTISISGDYAYGYLKGEQGVHRLVRISPFDSAK 192
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
H + A V+V+P+ E S +++I EDL F S G+ ++ A I H+P+G
Sbjct: 193 RRH-TSFASVEVMPVLPE-SVEIEIRPEDLKMDTFRSSGAGGQYVNMTDSAVRITHVPSG 250
Query: 228 IAV 230
I V
Sbjct: 251 IIV 253
>gi|338730825|ref|YP_004660217.1| peptide chain release factor 2 (bRF-2) [Thermotoga thermarum DSM
5069]
gi|335365176|gb|AEH51121.1| bacterial peptide chain release factor 2 (bRF-2) [Thermotoga
thermarum DSM 5069]
Length = 367
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 13/232 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D ++E+ KL + K++ + + EE ++ +L++ D + R
Sbjct: 44 DIWNDQKSASEIGKKLRRAKKLLEDVTKIDRILEEIEIGLELSDE---DPEFVQDVERRV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K++ Q+++ +L P D A +++ G+ G WA+ LL MY+RWA+K+G+
Sbjct: 101 TNLEKIVKQFQLDLILNDPMDQNNAYLSVHPGAGGTESHDWAQMLLRMYMRWAEKKGFEV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD + GVKSAT+ + EYA+GYL E G H L+ + + + A V+V+
Sbjct: 161 ELVDFQPGEEAGVKSATLLIKGEYAYGYLKHERGVHRLVRISPFDAAGRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQIS--DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E S D++I EDL F + G+ + A I HIPTGI V
Sbjct: 221 P---ELSDDIEIEIRPEDLKIETFRASGHGGQYVNKTDSAVRITHIPTGIVV 269
>gi|408829971|ref|ZP_11214861.1| peptide chain release factor 2 [Streptomyces somaliensis DSM 40738]
Length = 368
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ V + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSRLSHLQAEVRKAETLRGRIDDLAVLFELAEAED-DPDTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDEREALVTIRAEAGGVDASDFAERLQRMYLRWAERHDYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFVVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + DL ++ S G+ + A I HIPTG+ V
Sbjct: 223 PV-VEQTDHIEIPENDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGVVV 271
>gi|68535523|ref|YP_250228.1| peptide chain release factor 2 [Corynebacterium jeikeium K411]
gi|260579727|ref|ZP_05847586.1| peptide chain release factor 2 [Corynebacterium jeikeium ATCC
43734]
gi|68263122|emb|CAI36610.1| peptide chain release factor RF-2 [Corynebacterium jeikeium K411]
gi|258602157|gb|EEW15475.1| peptide chain release factor 2 [Corynebacterium jeikeium ATCC
43734]
Length = 377
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID-----YGLFKR 60
+LWDDP + +V +L+ + +K LR + ++ ++ +AE EA D +
Sbjct: 43 SLWDDPDHAQQVTSELSRVQSKLKKVKGLRQRLDDLPVLYDMAEEEAGDDPDAAQEAVQL 102
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A ++ + ++ E++ +L G D A + I++ + G+ WAE LL MY RWA+K
Sbjct: 103 ADTEREELRQEIESLEVTTMLSGEYDEREAVLNIRSAAGGVDAADWAEMLLRMYTRWAEK 162
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSATI EY +G LS E G H L+ + + + A
Sbjct: 163 AGHKVEVYDISYAEEAGIKSATIVIHGEYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 222
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +E + + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 223 EVEVLPV-VEQTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 276
>gi|110802702|ref|YP_699445.1| peptide chain release factor 2 [Clostridium perfringens SM101]
gi|123145940|sp|Q0SR12.1|RF2_CLOPS RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 364
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 47 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 ALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 165 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 225 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 273
>gi|377574295|ref|ZP_09803326.1| peptide chain release factor 2 [Mobilicoccus pelagius NBRC 104925]
gi|377537098|dbj|GAB48491.1| peptide chain release factor 2 [Mobilicoccus pelagius NBRC 104925]
Length = 356
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V L+ + + ++ + + ++ + + ++ + D A
Sbjct: 28 DLWDDQENAQHVTSSLSRANAELERIEGMDSRIDDLEALVEMGTEDGGDAETLAEAETEL 87
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K + + E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ Y
Sbjct: 88 AAVKKAVGELEVRTLLSGEYDQREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHEYPT 147
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E YA+G +S E G H L+ + + + A V+VV
Sbjct: 148 KVMDTSYAEEAGIKSATFEINVPYAYGNMSVEAGTHRLVRISPFDNQGRRQTSFAAVEVV 207
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I + +L +F S G+ + A + HIPTG V
Sbjct: 208 PL-IEQTDHIDIPENELKIDVFRSSGPGGQSVNTTDSAVRMTHIPTGTVV 256
>gi|269976501|ref|ZP_06183486.1| peptide chain release factor 2 [Mobiluncus mulieris 28-1]
gi|269935302|gb|EEZ91851.1| peptide chain release factor 2 [Mobiluncus mulieris 28-1]
Length = 378
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 13/237 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME-------AIDYGLF 58
+LWDD + ++ L+ + + L+ ++ + E+ + +L E A +
Sbjct: 44 DLWDDQENAQKITQTLSATQSDLERLQTMKTRLEDFAALVELGGEELMSEDGRADGQAIM 103
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ A ++ L E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA
Sbjct: 104 EDAEATYKTLAADLAALEVRTLLNGEYDERFAVVTIRSGAGGVDAADFAQMLLRMYLRWA 163
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ GY +V+D + G+KSAT E + YA+G LS E G H L N + + +
Sbjct: 164 ERHGYPTKVMDTSYAEEAGIKSATFEIDAPYAYGRLSVEAGTHRLARVSPFNAAGKRQTS 223
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V+V+PL +ET+ + + + D+ +F S G+ + A + H+PTGI +
Sbjct: 224 FAAVEVIPL-IETTDHIDVPESDIKIDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVI 279
>gi|255283235|ref|ZP_05347790.1| peptide chain release factor 2 [Bryantella formatexigens DSM 14469]
gi|255266308|gb|EET59513.1| peptide chain release factor 2 [Marvinbryantia formatexigens DSM
14469]
Length = 334
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 114/245 (46%), Gaps = 35/245 (14%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKD-------LRYKAEEAKLIAQLAEMEAIDYGLF 58
+ WDDP S E S+K + ALKD L+ + EE + + ++A E D L
Sbjct: 5 DFWDDPESSQE-------SMKTLKALKDDVETYAVLKEQYEEIETLIEMA-YEENDASLI 56
Query: 59 KRAYRASLDVSKLLDQY-------EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLL 111
L++ + LD + + LL G D A VT+ AG+ G WA L
Sbjct: 57 -------LEIQETLDSFIATFENIRIRTLLSGEYDKNDAIVTLHAGAGGTESCDWAGMLY 109
Query: 112 NMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NG 169
MY RWADK+GY V+D + G+KS T E E A+GYL E G H L+ N
Sbjct: 110 RMYTRWADKKGYTVEVLDYLDGEEAGIKSVTFEVRGENAYGYLKSEKGVHRLVRISPFNA 169
Query: 170 SFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPT 226
+ + + DV+P +E D++I +EDL + S G+ + A I H+PT
Sbjct: 170 AGKRQTSFVSCDVMP-DIEEDLDIEIREEDLRIDTYRSSGAGGQHINKTSSAVRITHLPT 228
Query: 227 GIAVR 231
I V+
Sbjct: 229 NIVVQ 233
>gi|39997376|ref|NP_953327.1| peptide chain release factor 2 [Geobacter sulfurreducens PCA]
gi|409912720|ref|YP_006891185.1| peptide chain release factor 2 [Geobacter sulfurreducens KN400]
gi|39984267|gb|AAR35654.1| peptide chain release factor 2 [Geobacter sulfurreducens PCA]
gi|307634992|gb|ADI85036.2| peptide chain release factor 2 [Geobacter sulfurreducens KN400]
Length = 372
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ ++ +VL + K+++ L +A++ +++ +L E EA D +
Sbjct: 44 FWDNNEEAQKVLRERTRIEKLIDLWDRLNRQADDIRVLIELGE-EAQDEATLDEVRALND 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + ++ E ++L GP+D V+I AG+ G + WAE LL MY+R+ +++G++
Sbjct: 103 SLEREVEGAEFQRMLSGPHDKNSCFVSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKTE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D GVKSAT + EYA+GYL E G H L+ F + + H + A V V
Sbjct: 163 ITDFQAGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E +++I++ DL + S G+ + A + H+PTGI V
Sbjct: 222 PE-IEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLTHLPTGIVV 270
>gi|365861270|ref|ZP_09401044.1| peptide chain release factor 2 [Streptomyces sp. W007]
gi|364009264|gb|EHM30230.1| peptide chain release factor 2 [Streptomyces sp. W007]
Length = 368
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LA E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLEVLFELAADEG-DADAQAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYIRWAERHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|254491393|ref|ZP_05104572.1| peptide chain release factor 2 [Methylophaga thiooxidans DMS010]
gi|224462871|gb|EEF79141.1| peptide chain release factor 2 [Methylophaga thiooxydans DMS010]
Length = 348
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDDP ++ ++ + A K+V L R E+AK + +LA +E D F A A
Sbjct: 28 SVWDDPDRAQKLGQERASLEKIVTTLSSHRDTLEDAKDLLELA-VEENDQETFD-AITAD 85
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K L++ E ++ G D A + I++GS G + WA LL MY+RW + + Y+
Sbjct: 86 LDELEKGLEKLEFQRMFSGKLDKNSAYIDIQSGSGGTEAQDWANILLRMYLRWGESQDYK 145
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ + G+KSATI E EYAFG L ETG H L+ F +G+ H + A +
Sbjct: 146 VELMEVSAGEVAGIKSATIRMEGEYAFGMLRTETGVHRLVRKSPFDSGARRH-TSFASIF 204
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + ++ I+ DL + + G+ + A I H PT I V+
Sbjct: 205 VYP-EVDDTIEIDINPADLRVDTYRASGAGGQHVNTTDSAIRITHEPTNIVVQ 256
>gi|227874895|ref|ZP_03993048.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35243]
gi|306818191|ref|ZP_07451922.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35239]
gi|307701756|ref|ZP_07638770.1| peptide chain release factor 2 [Mobiluncus mulieris FB024-16]
gi|227844670|gb|EEJ54826.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35243]
gi|304649155|gb|EFM46449.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35239]
gi|307613014|gb|EFN92269.1| peptide chain release factor 2 [Mobiluncus mulieris FB024-16]
Length = 378
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 13/237 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME-------AIDYGLF 58
+LWDD + ++ L+ + + L+ ++ + E+ + +L E A +
Sbjct: 44 DLWDDQENAQKITQTLSATQSDLERLQTMKTRLEDFAALVELGGEELMSEDGRADGQAIM 103
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ A ++ L E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA
Sbjct: 104 EDAEATYKTLAADLAALEVRTLLNGEYDERFAVVTIRSGAGGVDAADFAQMLLRMYLRWA 163
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ GY +V+D + G+KSAT E + YA+G LS E G H L N + + +
Sbjct: 164 ERHGYPTKVMDTSYAEEAGIKSATFEIDAPYAYGRLSVEAGTHRLARVSPFNAAGKRQTS 223
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V+V+PL +ET+ + + + D+ +F S G+ + A + H+PTGI +
Sbjct: 224 FAAVEVIPL-IETTDHIDVPESDIKIDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVI 279
>gi|411005038|ref|ZP_11381367.1| peptide chain release factor 2 [Streptomyces globisporus C-1027]
Length = 368
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E A
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFELAEAEGDAD-AQAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVKKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHSYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|365873548|ref|ZP_09413081.1| peptide chain release factor 2 [Thermanaerovibrio velox DSM 12556]
gi|363983635|gb|EHM09842.1| peptide chain release factor 2 [Thermanaerovibrio velox DSM 12556]
Length = 374
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+ P S ++ +LA + + L + ++ +++ ++ + E D L + Y+ +
Sbjct: 45 FWERPD-SKDLARELAQLQQRRESFSALEREIQDLEVLVEMLQ-EGEDEELSQEFYQRAE 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + L++ ++ LL D A ++I AG+ G+ + WAE L MYVRWA++ G++ +
Sbjct: 103 VLEERLERSQVLTLLDEEYDQSDAILSIHAGAGGLDSQDWAEMLYRMYVRWAERNGFKVK 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D+ + G+KS TI+ EYA+GYL GE G H L+ + + + A V+V+P
Sbjct: 163 LLDELPDQEAGIKSVTIQVSGEYAYGYLKGENGVHRLVRISPFDAAKRRHTSFASVEVMP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ L +++I EDL F S G+ ++ A I HIPTGI V
Sbjct: 223 V-LPDDVEIEIRPEDLKMDTFRSSGAGGQYVNMTDSAVRITHIPTGIVV 270
>gi|242372989|ref|ZP_04818563.1| peptide chain release factor 2 [Staphylococcus epidermidis
M23864:W1]
gi|242349315|gb|EES40916.1| peptide chain release factor 2 [Staphylococcus epidermidis
M23864:W1]
Length = 386
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WDD K+ +++ K +VN DL + E+ +L + E D +
Sbjct: 54 MMADPGFWDDQNKAQDIIDKNNALKSIVNGYHDLANEVEDMSATRELLQ-EEYDEDMKAE 112
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 113 LEEEVIQFKEKMDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 172
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 173 KGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 232
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 233 SCDVIPDFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 287
>gi|168213727|ref|ZP_02639352.1| peptide chain release factor 2 [Clostridium perfringens CPE str.
F4969]
gi|170714817|gb|EDT26999.1| peptide chain release factor 2 [Clostridium perfringens CPE str.
F4969]
Length = 323
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIINEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 232
>gi|289432457|ref|YP_003462330.1| hypothetical protein DehalGT_0507 [Dehalococcoides sp. GT]
gi|288946177|gb|ADC73874.1| hypothetical protein DehalGT_0507 [Dehalococcoides sp. GT]
Length = 361
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 9/236 (3%)
Query: 4 NYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
N + W D + + + KLA + + + L + + + +LA + D L
Sbjct: 37 NPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRIND---LTELAVLSREDPSLSNEIEH 93
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ LD E+ G D A +T+ AG+ G+ + WA LL M++RWA K+G+
Sbjct: 94 EISGLTAELDSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAAKKGF 153
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D+ + G+KSAT++ E EYA+G+L E G H LI + + A V+
Sbjct: 154 GMEILDQSLGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVE 213
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
++P E S D+ I ED+ +F S G+ A + HIP+GI V T
Sbjct: 214 IMP-EAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVASQT 268
>gi|29831645|ref|NP_826279.1| peptide chain release factor 2 [Streptomyces avermitilis MA-4680]
gi|81717933|sp|Q82D82.1|RF2_STRAW RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|29608761|dbj|BAC72814.1| putative peptide chain release factor 2 [Streptomyces avermitilis
MA-4680]
Length = 368
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +ET+ ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VETTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|404442032|ref|ZP_11007214.1| peptide chain release factor 2 [Mycobacterium vaccae ATCC 25954]
gi|403657659|gb|EJZ12425.1| peptide chain release factor 2 [Mycobacterium vaccae ATCC 25954]
Length = 371
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 12/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD ++ +V L+ + + L++LR + E+ ++ +LA E G + A
Sbjct: 43 QLWDDQARAQKVTSDLSHAQNELRRLEELRGRIEDLPVLYELASEED-GAGGAEALEEAD 101
Query: 66 LDVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 102 AELAKLREDIAAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQHN 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 162 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V
Sbjct: 221 VEVLPV-VETTDHIDIPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|429194272|ref|ZP_19186373.1| peptide chain release factor 2 [Streptomyces ipomoeae 91-03]
gi|428670028|gb|EKX68950.1| peptide chain release factor 2 [Streptomyces ipomoeae 91-03]
Length = 368
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ASVKKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V
Sbjct: 223 PV-VEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|451979627|ref|ZP_21928042.1| Peptide chain release factor 2 (RF-2) [Nitrospina gracilis 3/211]
gi|451763155|emb|CCQ89239.1| Peptide chain release factor 2 (RF-2) [Nitrospina gracilis 3/211]
Length = 301
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + L + E+ +L G ND A + I +G+ G + WA+ LL MY+RW D+ GY+
Sbjct: 37 DLEQALTEAELKAMLSGDNDGNNALLNINSGAGGTESQDWAQMLLRMYLRWGDRNGYKSE 96
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT+ F +YA+GYL E G H L+ + + + A V V P
Sbjct: 97 VLDMQYGEEAGIKSATVNFVGDYAYGYLKAEIGVHRLVRISPYDANKRRHTSFASVFVFP 156
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E D+++ D+DL ++ + G+ + A I H+PTGI V+
Sbjct: 157 EVAE-DIDVEVKDDDLKIDVYRASGPGGQGVNTTDSAVRITHMPTGIVVQ 205
>gi|255074407|ref|XP_002500878.1| predicted protein [Micromonas sp. RCC299]
gi|226516141|gb|ACO62136.1| predicted protein [Micromonas sp. RCC299]
Length = 428
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 26/250 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR-- 63
LWDDP K+ V+ +LAD+ + + + +A + ++ + E D L A
Sbjct: 74 TLWDDPIKAKAVMAELADAKEQLATARGFENLLGDAAVALEMIDAEREDDSLSGAAANDA 133
Query: 64 --------------ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQ 109
A ++ + LD++E+ +LL G D A V + AG+ G + WAE
Sbjct: 134 SAGPDPTILAELSDACDNLERQLDKWEVRRLLGGKYDAMPALVNVYAGAGGTDAQDWAEM 193
Query: 110 LLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNG 169
L MY W + G+ R V++ + G+KS T E + +A+GYL E G H L+
Sbjct: 194 LERMYRGWCNSRGFTWRTVERSEGEEAGLKSVTFEVQGRFAYGYLRSERGTHRLVR--QS 251
Query: 170 SFPHEAT----LACVDVVPLFLETS-PDLQISDEDLLFS---SPSLPGERQSIAKPAACI 221
F +AT A V+V P+ E S +L + D DL S S G+ + + A I
Sbjct: 252 PFKKDATRQTSFAAVEVTPVLDEGSVEELTLRDSDLEISTMRSGGAGGQNVNKVETAVRI 311
Query: 222 QHIPTGIAVR 231
+H+PTGI VR
Sbjct: 312 KHVPTGITVR 321
>gi|345854356|ref|ZP_08807192.1| peptide chain release factor 2 [Streptomyces zinciresistens K42]
gi|345634189|gb|EGX55860.1| peptide chain release factor 2 [Streptomyces zinciresistens K42]
Length = 368
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKTEALRGRIDDLAVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|168205594|ref|ZP_02631599.1| peptide chain release factor 2 [Clostridium perfringens E str.
JGS1987]
gi|169344216|ref|ZP_02865198.1| peptide chain release factor 2 [Clostridium perfringens C str.
JGS1495]
gi|422346837|ref|ZP_16427751.1| peptide chain release factor 2 [Clostridium perfringens WAL-14572]
gi|169297675|gb|EDS79775.1| peptide chain release factor 2 [Clostridium perfringens C str.
JGS1495]
gi|170662903|gb|EDT15586.1| peptide chain release factor 2 [Clostridium perfringens E str.
JGS1987]
gi|373225670|gb|EHP48001.1| peptide chain release factor 2 [Clostridium perfringens WAL-14572]
Length = 323
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 232
>gi|110801299|ref|YP_696849.1| peptide chain release factor 2 [Clostridium perfringens ATCC 13124]
Length = 362
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 45 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 103 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 163 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 223 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 271
>gi|424780263|ref|ZP_18207143.1| Peptide chain release factor 2 [Catellicoccus marimammalium
M35/04/3]
gi|422843221|gb|EKU27662.1| Peptide chain release factor 2 [Catellicoccus marimammalium
M35/04/3]
Length = 327
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 11/231 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ +++ ++ + K + + L + EE +++ +LAE +A F++
Sbjct: 5 DFWDDAERARKIIAEVNLAKKQLETFQSLEQQQEELEMMVELAETDAD----FQQELEEQ 60
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + L YE+ +LL P D A + I G+ G + W LL MY RWA+K ++
Sbjct: 61 LPQFEEQLGAYELEQLLDDPYDHNNALLEIHPGAGGTESQDWGSMLLRMYQRWAEKHHFK 120
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+D G+KS T+ + E A+GYL E G H L+ + + + A V+V
Sbjct: 121 VETMDYQPGDEAGIKSVTLLIKGENAYGYLKSEHGVHRLVRISPFDAANRRHTSFASVEV 180
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P E D++I DEDL + + G+ + + A I H+PTGI V
Sbjct: 181 MPEINE-DIDIEIKDEDLKIDTYRASGAGGQHINKTESAVRITHLPTGIVV 230
>gi|71892043|ref|YP_277773.1| peptide chain release factor 2 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71796149|gb|AAZ40900.1| peptide chain release factor 2 (RF-2) [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 348
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W +P K+ ++L + + SLK+ + D YK L L E D L + S+
Sbjct: 24 IWKNP-KTAKILRQKSSSLKIFINIVDQLYK-NLVDLNDLLELTEEYDNILLSEIHDQSI 81
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + L Q E+S++ G D + I++GS GI + WA LL MY+RW D +G+
Sbjct: 82 DLERTLSQLEISRMFIGKYDNSNCYIDIQSGSGGIEAQDWASMLLRMYLRWIDHKGFMAD 141
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+++ + G+KSATI+ YA+G+L E+G H L+ F + H + A V V
Sbjct: 142 VIEESTGEVTGIKSATIQVIGPYAYGWLRTESGVHRLVRKSPFDSAKKRH-TSFASVFVY 200
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ S ++ I EDL ++ + G+ + + A I HIPT I +
Sbjct: 201 PE-LDDSINIHIRPEDLRCDVYRASGAGGQHVNRTESAVRITHIPTNIVTQ 250
>gi|317133128|ref|YP_004092442.1| peptide chain release factor 2 [Ethanoligenens harbinense YUAN-3]
gi|315471107|gb|ADU27711.1| peptide chain release factor 2 [Ethanoligenens harbinense YUAN-3]
Length = 377
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D S VL K + + + LR K ++ + +LA+ E D + A A
Sbjct: 48 DFWNDIENSQSVLQKTRQLKDKIASYEALRRKTDDTLALIELADEEE-DLSVLAEAAEAV 106
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V +D ++ LL G D + A +T AG+ G + WAE L MY RWA++ G+
Sbjct: 107 DSVRAQIDTMRLATLLTGEYDAKNAILTFHAGAGGTEAQDWAEMLYRMYTRWAERHGFNV 166
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSA++ E A+GYL E G H L+ + S + A V+V+
Sbjct: 167 QVLDYLDGEEAGLKSASVLIEGLNAYGYLKSEIGVHRLVRVSPFDSSGRRHTSFASVEVM 226
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ S ++ I ED+ +F S G+ + A + H+PTGI V
Sbjct: 227 P-EIDDSIEVDIRPEDIKMDVFRSSGAGGQHINKTSSAVRLTHLPTGIVV 275
>gi|281185482|sp|Q0TNE1.2|RF2_CLOP1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|255529900|gb|ABG84933.2| peptide chain release factor 2, programmed frameshift [Clostridium
perfringens ATCC 13124]
Length = 362
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 45 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 103 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 163 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 223 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 271
>gi|440509837|ref|YP_007347273.1| peptide chain release factor 2 [Candidatus Blochmannia chromaiodes
str. 640]
gi|440454050|gb|AGC03542.1| peptide chain release factor 2 [Candidatus Blochmannia chromaiodes
str. 640]
Length = 348
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W +P K+ ++L + + SLK+ + D YK L L E D L + S+
Sbjct: 24 IWKNP-KTAKILRQKSSSLKIFINIVDQLYK-NLVDLNDLLELTEEYDNILLSEIHDQSI 81
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + L Q E+S++ G D + I++GS GI + WA LL MY+RW D +G+
Sbjct: 82 DLERTLSQLEISRMFIGKYDNSNCYIDIQSGSGGIEAQDWASMLLRMYLRWIDHKGFMAD 141
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+++ + G+KSATI+ YA+G+L E+G H L+ F + H + A V V
Sbjct: 142 VIEESTGEVTGIKSATIQVIGPYAYGWLRTESGVHRLVRKSPFDSAGKRH-TSFASVFVY 200
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ S ++ I EDL ++ + G+ + + A I HIPT I +
Sbjct: 201 PE-LDDSINIHIRPEDLRCDVYRASGAGGQHVNRTESAVRITHIPTNIVTQ 250
>gi|365826624|ref|ZP_09368533.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 849 str.
F0330]
gi|365265903|gb|EHM95631.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 849 str.
F0330]
Length = 396
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++ L + E+ + + +LA E D + A
Sbjct: 66 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGDDAAEILAEAET 125
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 126 DLAAISKDLSDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHDY 185
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 186 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 245
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 246 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 296
>gi|242066770|ref|XP_002454674.1| hypothetical protein SORBIDRAFT_04g035390 [Sorghum bicolor]
gi|241934505|gb|EES07650.1| hypothetical protein SORBIDRAFT_04g035390 [Sorghum bicolor]
Length = 467
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V + + + + ++ L + E + +LA E D L + RA
Sbjct: 138 DLWEDPVFAGRVSREQGELMGKIKSVNQLEQELIEHIEMLRLAREEN-DNELEMESMRAL 196
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + E++ LL ND + ++AG+ G WA ++NMY WA + GY
Sbjct: 197 ADMRISAKEKELNALLSRDNDSCSCFIEVQAGAGGTESMDWAAMVMNMYKSWAQRRGYTV 256
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VV++ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 257 TVVEEMPGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 315
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+P+ + S QI D DL F S G+ + + A I HIPTGI+
Sbjct: 316 IPILGDASSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHIPTGIS 365
>gi|319951472|ref|ZP_08025281.1| peptide chain release factor 2 [Dietzia cinnamea P4]
gi|319434864|gb|EFV90175.1| peptide chain release factor 2 [Dietzia cinnamea P4]
Length = 368
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M + +LW+D ++ +V +L+ + ++LR + E+ L+ +LAE E D
Sbjct: 38 MAADPDLWNDQDRAQKVTSELSYIQADLRRCRELRQRIEDLPLMYELAEEEGGDAVEEAD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A RASL + ++ E+ +L G D A V I+AG+ G+ +AE L+ MYVRWA+K
Sbjct: 98 AERASL--REDVEAMEVKTMLSGEYDQREAVVNIRAGAGGVDAADFAEMLMRMYVRWAEK 155
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 156 NGHKVEVYDTSYAEEAGIKSATFIVKDPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 215
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET +++ + ++ ++ S G+ + A + HIPTGI V
Sbjct: 216 EVEVLPV-VETVDSIEVPENEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|406906745|gb|EKD47811.1| hypothetical protein ACD_65C00278G0002 [uncultured bacterium]
Length = 364
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD T + ++ + K++ + + + E+ +A++ + D+ F+ +++
Sbjct: 42 FWDDATHAKKISEEAGRIRKILEQWEGFQKEIEDTLELAEITD-PVTDHKTFRELEKSAE 100
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K LD+ + L G D A V+I +G+ G+ + WAE LL MY+R+A+K+ ++
Sbjct: 101 EFQKKLDKLSIQLYLGGRYDNSDAIVSIHSGTGGVDAQDWAEMLLRMYLRYAEKKEWQVE 160
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+V+K + G+KSA I + +A+G L E G H L+ N E + A V+V P
Sbjct: 161 LVEKTAAEEAGIKSAEISVKGPFAYGMLKEEHGVHRLVRMSPFNSGGTRETSFALVEVTP 220
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ ET D++I++ DL F S G+ + A + H PTG+ V+
Sbjct: 221 IIHETD-DVEINESDLEIDTFRSGGAGGQHVNKTDSAVRLTHKPTGLVVK 269
>gi|329946372|ref|ZP_08293939.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328527348|gb|EGF54346.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 373
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++ L + E+ + + +LA E D + A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGDDAAEILAEAES 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLTAISKDLSDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHEY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 223 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 273
>gi|326383344|ref|ZP_08205032.1| peptide chain release factor 2 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198094|gb|EGD55280.1| peptide chain release factor 2 [Gordonia neofelifaecis NRRL
B-59395]
Length = 370
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 121/232 (52%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL--FKRAYR 63
+LW+D + +V +L+ + + + +LR + ++ ++ +LAE E D G+ + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQAELRRVTELRSRLDDLPVLYELAEAEEGDAGVSATEDADT 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
D+ + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++ G+
Sbjct: 103 ERADLRRDIEAMEVKTMLAGEYDPREALVNIRSGAGGVDAADWAQMLMRMYIRWAEQHGH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + Y +G LS E G H L+ + + + A V+
Sbjct: 163 SVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 223 VLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 273
>gi|403387502|ref|ZP_10929559.1| peptide chain release factor 2 [Clostridium sp. JC122]
Length = 325
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ E+ + + + K L + E+ +++ +L+ E D +K +
Sbjct: 6 FWDDVNKAQEITQQSKNINDKIEKFKSLNLRVEDLEILTELSLEEENDES-YKEIKKELK 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++D ++ LL G D A VT+ G+ G + W E L MY R+ + +G++
Sbjct: 65 ELRVIIDDLKVETLLNGEYDRNNAIVTLHTGAGGNDAQDWTEMLYRMYTRYCESKGFKIE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+K T++ EYA+GYL E G H L+ N + + + A +V+P
Sbjct: 125 VIDYIPADEAGIKGVTLKVTGEYAYGYLKAEKGVHRLVRISPFNANGKRQTSFAGCEVLP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E S D+ I +DL F + G+ + + A I HIPTGI V+
Sbjct: 185 ELTE-SQDIDIKSDDLKIDTFRASGAGGQHVNKTESAIRITHIPTGIVVQ 233
>gi|420152309|ref|ZP_14659363.1| peptide chain release factor 2 [Actinomyces massiliensis F0489]
gi|394764981|gb|EJF46604.1| peptide chain release factor 2 [Actinomyces massiliensis F0489]
Length = 371
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + +++L + ++ + + ++A E+ + L A
Sbjct: 43 DLWDDPEAAQAVTSALSHAQADLGRVEELGARIDDLEAMVEMAGEESGEDADELLAEADS 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLEAISKDLSDLEIRTLLSGEYDQRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 SVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + + + D+ +F S G+ + A I HIPTG+ V
Sbjct: 223 VIPL-IESTDHIDVPETDIRIDVFRSSGPGGQSVNTTDSAVRITHIPTGLVV 273
>gi|325578209|ref|ZP_08148344.1| peptide chain release factor RF2 [Haemophilus parainfluenzae ATCC
33392]
gi|419844760|ref|ZP_14368047.1| peptide chain release factor 2 [Haemophilus parainfluenzae HK2019]
gi|325159945|gb|EGC72074.1| peptide chain release factor RF2 [Haemophilus parainfluenzae ATCC
33392]
gi|386416686|gb|EIJ31178.1| peptide chain release factor 2 [Haemophilus parainfluenzae HK2019]
Length = 364
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 9/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP K+ + + +VV+ +K+L E+ + + +LA +EA D F A
Sbjct: 44 DVWNDPEKAQALGKERVSLEQVVDTIKNLEQGLEDVEGLLELA-VEAEDEETFNEAVAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 103 DELEQQLAKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A V V
Sbjct: 163 ELMEVSDGDVAGLKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAVFV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ + D++I+ DL ++ + G+ + + A I H+P+GI V+
Sbjct: 222 YPE-IDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQ 272
>gi|408678448|ref|YP_006878275.1| Peptide chain release factor 2 [Streptomyces venezuelae ATCC 10712]
gi|328882777|emb|CCA56016.1| Peptide chain release factor 2 [Streptomyces venezuelae ATCC 10712]
Length = 367
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLAVLFELAE-EMDDPDTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 TSVRKALDEMEVRTLLSGEYDEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E+S ++I + +L ++ + G+ + A I H+PTGI V
Sbjct: 223 PV-VESSDHVEIDESELRVDVYRASGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|260892371|ref|YP_003238468.1| PE-PGRS family protein [Ammonifex degensii KC4]
gi|260864512|gb|ACX51618.1| PE-PGRS family protein [Ammonifex degensii KC4]
Length = 377
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D ++ V ++A + + LR EE ++ +LA E L + A
Sbjct: 43 DFWRDLARAQAVTQEVASLRQCLGRFYRLREGHEELSVLLELAAEEGDAQVLAELAQ--- 99
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
DV KL ++ E+ LL GP D A V++ AG+ G + W LL MY RWA+ G
Sbjct: 100 -DVKKLAGEIEDLEVELLLSGPYDASNAIVSLHAGAGGTDAQDWVAMLLRMYARWAEAHG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
YR R +D + G+KS T E A+GYL E G H LI + S + A V
Sbjct: 159 YRIRTLDLLTGEEAGIKSVTFEVIGPRAYGYLKAERGVHRLIRISPFDASGRRHTSFASV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P ++ +++I+ E+L F + G+ + + A I H+PTGI V
Sbjct: 219 DVLP-AVKDDTEIKIAPEELRIDTFRASGAGGQHVNKTETAVRITHLPTGITV 270
>gi|298244286|ref|ZP_06968092.1| peptide chain release factor 2 [Ktedonobacter racemifer DSM 44963]
gi|297551767|gb|EFH85632.1| peptide chain release factor 2 [Ktedonobacter racemifer DSM 44963]
Length = 337
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D K+ + +L + V + L + ++ + +A + E E D + ++
Sbjct: 4 DFWSDNRKAQAHMQQLNALREEVTTWEQLATQLKDLQELALMLEEEPDD-DMQAEVAQSI 62
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++ E + +L G +D + A ++I AGS G+ + WAE LL MY+RWAD+ +R
Sbjct: 63 HPIEEQIEKLEFALMLSGEHDEKNAILSIHAGSGGVDAQDWAEMLLRMYLRWADQHRFRT 122
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++ D + G+KSAT+E E +A+GYL E G H LI + + + + A V+++
Sbjct: 123 QIYDYSEGEEAGIKSATVEIEGRFAYGYLRSEAGTHRLIRLSPFDAAHRRQTSFAKVELM 182
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E + ++ I ED+ + S G+ + A ++H+P+GI V
Sbjct: 183 P-DIENTIEISIRPEDIEVDTYRSTGAGGQHVNKTDSAVRMRHVPSGIVV 231
>gi|253680935|ref|ZP_04861738.1| peptide chain release factor 2 [Clostridium botulinum D str. 1873]
gi|253562784|gb|EES92230.1| peptide chain release factor 2 [Clostridium botulinum D str. 1873]
Length = 327
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 7/234 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ K+ E+ + + + + + E+ K++ +++ +E D +
Sbjct: 5 NFWDNINKAQEITQEAKGLKDKIEKYYNTKNRLEDLKVLIEIS-IEEDDESSVEEILNEI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V ++D++++ LL G D A V++ AG+ G + W E LL MY RWA+ +GY+
Sbjct: 64 KEVKVIIDEFKVQILLSGEYDKNNAIVSLHAGAGGTDAQDWTEMLLRMYTRWAEAKGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KSA+++ E+A+GYL E G H L+ N + + + A ++V+
Sbjct: 124 EILDILPGDEAGIKSASLKIMGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E S D++I +DL + + G+ + A I HIPTGI V+ +
Sbjct: 184 PELTE-SQDIEIKSDDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQS 236
>gi|407647998|ref|YP_006811757.1| peptide chain release factor 2 [Nocardia brasiliensis ATCC 700358]
gi|407310882|gb|AFU04783.1| peptide chain release factor 2 [Nocardia brasiliensis ATCC 700358]
Length = 371
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + +++LR + ++ ++ +LAE E G + A A
Sbjct: 43 DLWNDQDHAQQVTSELSHAQGELRRVEELRQRLDDLPVLYELAEGEE---GDSRTAALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E+ LL G D A V I++G+ G+ WAE L+ MY+RWAD+
Sbjct: 100 ADAERAALHGDVEAMEVRTLLSGEYDKRDALVNIRSGAGGVDAADWAEMLMRMYIRWADR 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
Y V D + G+KSAT + YA+G LS E G H L+ + + + A
Sbjct: 160 HKYSVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ ++I + ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIEIPEGEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|404216093|ref|YP_006670288.1| Protein chain release factor B [Gordonia sp. KTR9]
gi|403646892|gb|AFR50132.1| Protein chain release factor B [Gordonia sp. KTR9]
Length = 371
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA---- 61
+LW+D + +V +L+ + + + +LR + E+ ++ +LAE E D + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVLYELAEAEEGDDKVTALADADS 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R SL + E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 103 ERESLRTD--IQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|399887171|ref|ZP_10773048.1| peptide chain release factor 2 [Clostridium arbusti SL206]
Length = 326
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 13/233 (5%)
Query: 7 LWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD K+ E+ K L D +++ NAL++ + E+AK++ Q+ + E D +
Sbjct: 6 FWDDMKKAQEITQKSKGLKDRVELFNALEE---RLEDAKILIQMCQEEE-DENILDEIVS 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ +D + + LL G D A + + G+ G + W E LL MY RW++ + +
Sbjct: 62 EINNLKVSIDTFRVEILLAGQYDRNNAILDLHTGAGGTDAQDWTEMLLRMYTRWSESKKF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D G+KS T++ E+A+GYL E G H L+ N + + + A V+
Sbjct: 122 KVETLDLLPGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVE 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P E + D+ I +DL + + G+ + + A I HIPTGI V+
Sbjct: 182 VLPELTE-NQDIDIKSDDLRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQ 233
>gi|385652457|ref|ZP_10047010.1| peptide chain release factor 2 [Leucobacter chromiiresistens JG 31]
Length = 369
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V L+ V ++ + + ++ +++ +LA+ + A
Sbjct: 44 DLWDDPAAAQKVTSGLSHRQARVKRVRGVEQRLDDLEVLVELAQEADDADSAEEAAAELV 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K++ E+ +L G D A VTI++G+ G +AE LL MY+RWA++ Y
Sbjct: 104 A-LEKVIQDLEVQTMLSGEYDERAAVVTIRSGAGGDDATDFAEMLLRMYLRWAEQHDYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSF-PHEATLACVDVV 183
+++D + G+KSAT E + YAFG +S E G H L P GS + + A V+V+
Sbjct: 163 KMLDTSYAEGAGIKSATFEIDAPYAFGTISVEAGTHRLARISPFGSADKRQTSFAGVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL LE + ++++ + D+ ++ S G+ + A I H+P+GI V
Sbjct: 223 PL-LEEATEVEVPEADIRVDVYRSSGPGGQSVNTTDSAVRITHLPSGIVV 271
>gi|385330508|ref|YP_005884459.1| peptide chain release factor 2 [Marinobacter adhaerens HP15]
gi|311693658|gb|ADP96531.1| peptide chain release factor 2 [Marinobacter adhaerens HP15]
Length = 351
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDDP ++ + + AD +V + +L E+A+ + +A E D G
Sbjct: 31 SVWDDPERAQALGKERADLELIVKTIDNLTSGLEDAEGLLDIA-AEEEDEGTVAEIESDL 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L++ E ++ G D A + I+AGS G + WA LL MY+RWA++ G++
Sbjct: 90 EGLDKELEKLEFRRMFSGEMDANNAYLDIQAGSGGTEAQDWANMLLRMYLRWAERRGFKA 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+V+ + G+KSATI + +YA+G+L ETG H L+ F +G+ H + + V V
Sbjct: 150 EIVELMEGEVAGIKSATIHIQGDYAYGWLRTETGVHRLVRKSPFDSGNRRH-TSFSSVFV 208
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ S +++I+ DL ++ + G+ + + A + H PTGI V
Sbjct: 209 SPE-VDDSFEIEINPADLRVDVYRASGAGGQHVNRTESAVRLTHNPTGIVV 258
>gi|440696583|ref|ZP_20879039.1| peptide chain release factor 2 [Streptomyces turgidiscabies Car8]
gi|440281166|gb|ELP68825.1| peptide chain release factor 2 [Streptomyces turgidiscabies Car8]
Length = 368
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEEAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TSVKKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVNVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|297200074|ref|ZP_06917471.1| peptide chain release factor 2 [Streptomyces sviceus ATCC 29083]
gi|297147562|gb|EDY54581.2| peptide chain release factor 2 [Streptomyces sviceus ATCC 29083]
Length = 368
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKADALRSRIDDLAVLFEMAE-EEDDSDTLAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TSVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|383643884|ref|ZP_09956290.1| peptide chain release factor 2 [Streptomyces chartreusis NRRL
12338]
Length = 368
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 VAVKKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S + I + +L ++ S G+ + A I HIPTGI V
Sbjct: 223 PV-VEQSDHVDIDESELRVDVYRSSGPGGQGVNTTDSAVRITHIPTGIVV 271
>gi|433602857|ref|YP_007035226.1| Peptide chain release factor 2 [Saccharothrix espanaensis DSM
44229]
gi|407880710|emb|CCH28353.1| Peptide chain release factor 2 [Saccharothrix espanaensis DSM
44229]
Length = 365
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ V +L+ + + LR + ++ ++ +LAE E D G A
Sbjct: 43 DLWDDQEQAQRVTSQLSHKQGELRRVVALRDRLDDLSVLYELAEDEG-DEGSLAEADTEH 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + E+ LL G D A VTI+A + GI +AE LL MY RWA++ GY
Sbjct: 102 RKLRDEISSLEVRTLLSGEYDERNALVTIRAEAGGIDAADFAEMLLRMYSRWAERHGYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+VV
Sbjct: 162 DVFDTSYAEEAGIKSATFRITAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I ++DL ++ S G+ + A + HIPTGI V
Sbjct: 222 PV-VEQTDHVDIDEKDLRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 270
>gi|386386064|ref|ZP_10071263.1| peptide chain release factor 2 [Streptomyces tsukubaensis
NRRL18488]
gi|385666472|gb|EIF90016.1| peptide chain release factor 2 [Streptomyces tsukubaensis
NRRL18488]
Length = 368
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSRLSHLQAELRKAEHLRGRIDDLAVLFELAEAED-DADTLAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V + +D+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 VSVRRAVDEMEVRTLLSGEYDEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYST 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E+S ++I + +L ++ + G+ + A I HIPTGI V
Sbjct: 223 PV-VESSDHVEIDESELRIDVYRASGPGGQGVNTTDSAVRITHIPTGIVV 271
>gi|345861348|ref|ZP_08813614.1| peptide chain release factor 2 [Desulfosporosinus sp. OT]
gi|344325613|gb|EGW37125.1| peptide chain release factor 2 [Desulfosporosinus sp. OT]
Length = 332
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +++ +LA V +L K EE + + LA +E D L +
Sbjct: 10 LWDDPDLAQKIMQELAYHQNKVKTYDELEGKLEETETLWLLA-IEEDDLSLESEIEQEVR 68
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + E+ LL G D A +T+ AG+ G + W + L +Y+RW ++ GY+
Sbjct: 69 SLRGRFEALELEILLSGQYDRNNAILTLHAGAGGTEAQDWVQMLYRLYIRWGERHGYKVE 128
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KSAT+ F E A+GY E G H L+ + S + A VDV+P
Sbjct: 129 TLDFLPGEEAGIKSATLSFSGENAYGYAKSEKGVHRLVRISPFDSSGRRHTSFASVDVIP 188
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E + ++ I EDL + S G+ + A I H+P+G+ V+
Sbjct: 189 EVTEDN-EITIDTEDLRVDTYRSGGAGGQHVNKTDSAIRITHLPSGVVVQ 237
>gi|375290410|ref|YP_005124950.1| peptide chain release factor 2 [Corynebacterium diphtheriae 241]
gi|376245243|ref|YP_005135482.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC01]
gi|371580081|gb|AEX43748.1| peptide chain release factor 2 [Corynebacterium diphtheriae 241]
gi|372107873|gb|AEX73934.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC01]
Length = 369
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D + A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALVLADEELAE 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 103 LTAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 161 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 221 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|365921384|ref|ZP_09445666.1| peptide chain release factor 2 [Cardiobacterium valvarum F0432]
gi|364576242|gb|EHM53578.1| peptide chain release factor 2 [Cardiobacterium valvarum F0432]
Length = 378
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 123/233 (52%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WD+P ++ ++ + A + VV L ++ ++A + +LAE E D A A
Sbjct: 56 SIWDNPEEATKLGQERAALISVVQGLDAIKQGLQDAFDLIELAEAE--DDEATVNAAIAD 113
Query: 66 LDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+D K ++ E ++ G D A + I+AGS G + WA LL MY+RW + GY+
Sbjct: 114 IDTHEKHIEDLEFRRMFAGELDANNAFLDIQAGSGGTEAQDWASMLLRMYLRWGEARGYK 173
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++++ G+KSATI+F EYA+G+L E G H L+ F +G+ H + A V
Sbjct: 174 TELIEESPGDVAGIKSATIQFSGEYAYGWLRTEIGVHRLVRKSPFDSGNRRH-TSFAAVF 232
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + ++ I+ DL ++ + G+ + + A I HIP+GI V+
Sbjct: 233 VSPE-IDDNIEVDINPADLRTDVYRASGAGGQHVNRTESAVRITHIPSGIVVQ 284
>gi|376253852|ref|YP_005142311.1| peptide chain release factor 2 [Corynebacterium diphtheriae PW8]
gi|372116936|gb|AEX69406.1| peptide chain release factor 2 [Corynebacterium diphtheriae PW8]
Length = 369
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A L
Sbjct: 44 LWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAEL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K ++
Sbjct: 104 TADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDHK 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V
Sbjct: 160 VDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|376284273|ref|YP_005157483.1| peptide chain release factor 2 [Corynebacterium diphtheriae 31A]
gi|371577788|gb|AEX41456.1| peptide chain release factor 2 [Corynebacterium diphtheriae 31A]
Length = 369
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A L
Sbjct: 44 LWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAEL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K ++
Sbjct: 104 TADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDHK 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V
Sbjct: 160 VDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|38233352|ref|NP_939119.1| peptide chain release factor 2 [Corynebacterium diphtheriae NCTC
13129]
gi|375292628|ref|YP_005127167.1| peptide chain release factor 2 [Corynebacterium diphtheriae INCA
402]
gi|376289900|ref|YP_005162147.1| peptide chain release factor 2 [Corynebacterium diphtheriae C7
(beta)]
gi|376292796|ref|YP_005164470.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC02]
gi|76363349|sp|Q6NIM2.1|RF2_CORDI RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|38199612|emb|CAE49268.1| peptide chain release factor 2 [Corynebacterium diphtheriae]
gi|371582299|gb|AEX45965.1| peptide chain release factor 2 [Corynebacterium diphtheriae INCA
402]
gi|372103296|gb|AEX66893.1| peptide chain release factor 2 [Corynebacterium diphtheriae C7
(beta)]
gi|372110119|gb|AEX76179.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC02]
Length = 369
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A L
Sbjct: 44 LWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAEL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K ++
Sbjct: 104 TADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDHK 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V
Sbjct: 160 VDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|345000024|ref|YP_004802878.1| peptide chain release factor 2 [Streptomyces sp. SirexAA-E]
gi|344315650|gb|AEN10338.1| peptide chain release factor 2 [Streptomyces sp. SirexAA-E]
Length = 352
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ V + LR + ++ ++ +LAE E A
Sbjct: 28 SLWDDPEAAQKITSRLSHLQAEVRKTEALRGRIDDLGVLFELAEDEGDAD-ALAEAEAEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 87 VSVRKALDEMEVRTLLSGEYDAREAVVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 147 EIYETSYAEEAGIKSTTFTVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 207 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 255
>gi|422875084|ref|ZP_16921569.1| peptide chain release factor 2 [Clostridium perfringens F262]
gi|380304079|gb|EIA16372.1| peptide chain release factor 2 [Clostridium perfringens F262]
Length = 323
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIEIILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 232
>gi|317968157|ref|ZP_07969547.1| peptide chain release factor 2 [Synechococcus sp. CB0205]
Length = 356
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 115/233 (49%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + +L + + L + +A+ ++ +E D L + A
Sbjct: 26 DFWDDQKLAQSKMRQLDEVKAQLEQLSQWKGAVADAEATVEIYGLEPDDE-LLSESDAAL 84
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ LD++E+ +LL G D EGA ++I AG+ G + WA L+ MY RWA+ G +
Sbjct: 85 KKLRADLDRWELERLLSGTYDKEGAVISINAGAGGTDAQDWALMLMRMYTRWAEDHGMKV 144
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 145 TVDELSDGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGVEVM 204
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P +E L I ++DL + S G+ + + A I HIPTG+ VR T
Sbjct: 205 P-KIEEEVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRILHIPTGLFVRCT 256
>gi|374601529|ref|ZP_09674529.1| peptide chain release factor 2 [Paenibacillus dendritiformis C454]
gi|374392864|gb|EHQ64186.1| peptide chain release factor 2 [Paenibacillus dendritiformis C454]
Length = 340
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 1 MVRNY-------NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI 53
M+ NY + WDD ++ ++ +L +V L+ E+ +++ +LA+ E
Sbjct: 1 MISNYEEKMSAPDFWDDNERAQGIISELNAIKGIVEEYSKLQQDHEDTQMMLELADEEN- 59
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D GL + + + + ++Q+E+ LL P D A + + G+ G + W + LL M
Sbjct: 60 DEGLAQELADSVKQLYERVEQFELQLLLSEPYDKMNAILELHPGAGGTESQDWGQMLLRM 119
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGS 170
Y RWA++ G++ V+D G+KS T+ + A+GYL E G H L+ F +
Sbjct: 120 YTRWAEQRGFKVEVLDYLPGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSG 179
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
H + ++C DVVP + D+++ EDL + + G+ + A I HIPTG
Sbjct: 180 RRHTSFVSC-DVVPEITD-DVDIEVRTEDLKIDTYRASGAGGQHINTTDSAVRITHIPTG 237
Query: 228 IAV 230
I V
Sbjct: 238 IVV 240
>gi|206901574|ref|YP_002251123.1| peptide chain release factor 2 [Dictyoglomus thermophilum H-6-12]
gi|206740677|gb|ACI19735.1| peptide chain release factor 2 [Dictyoglomus thermophilum H-6-12]
Length = 330
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
L ++E+ +L+ P+D A +++ AG+ G + W E LL MY+RWA+++GY+ +++D
Sbjct: 69 LKEFEIEMILQDPHDEANAILSLHAGTGGTDAQDWTEILLRMYIRWAERKGYQVKILDIS 128
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KSAT+ E + A+GYL GE G H L+ + + + A V+V+P E+
Sbjct: 129 PGEEAGIKSATLLIEGDKAYGYLKGEKGVHRLVRISPFDANHRRHTSFALVEVIPELPES 188
Query: 190 SPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ ++I EDL F + G+ + + A I HIPTGI V+
Sbjct: 189 T--IEIRPEDLKIETFRAGGAGGQHVNKVESAVRITHIPTGIVVQ 231
>gi|18311152|ref|NP_563086.1| peptide chain release factor 2 [Clostridium perfringens str. 13]
gi|18145835|dbj|BAB81876.1| peptide chain release factor 2 [Clostridium perfringens str. 13]
Length = 323
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ ++L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFRNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 232
>gi|422427717|ref|ZP_16504628.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA1]
gi|422433544|ref|ZP_16510412.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA2]
gi|422436114|ref|ZP_16512971.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA2]
gi|422444424|ref|ZP_16521218.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA1]
gi|422445123|ref|ZP_16521877.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA1]
gi|422450881|ref|ZP_16527594.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA2]
gi|422453755|ref|ZP_16530442.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA3]
gi|422501687|ref|ZP_16577941.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA2]
gi|422510282|ref|ZP_16586428.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA1]
gi|422543255|ref|ZP_16619105.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA1]
gi|422548178|ref|ZP_16623994.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA3]
gi|422550066|ref|ZP_16625866.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA1]
gi|422562692|ref|ZP_16638369.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA1]
gi|422571720|ref|ZP_16647301.1| peptide chain release factor 2 [Propionibacterium acnes HL067PA1]
gi|313816439|gb|EFS54153.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA1]
gi|313827262|gb|EFS64976.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA2]
gi|314917824|gb|EFS81655.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA1]
gi|314919714|gb|EFS83545.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA3]
gi|314930043|gb|EFS93874.1| peptide chain release factor 2 [Propionibacterium acnes HL067PA1]
gi|314956378|gb|EFT00690.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA1]
gi|314957250|gb|EFT01353.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA1]
gi|314967699|gb|EFT11798.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA1]
gi|315098170|gb|EFT70146.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA2]
gi|315101677|gb|EFT73653.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA1]
gi|315109496|gb|EFT81472.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA2]
gi|327452380|gb|EGE99034.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA3]
gi|327452743|gb|EGE99397.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA2]
gi|328753837|gb|EGF67453.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA1]
Length = 370
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 225 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 273
>gi|1402638|dbj|BAA13170.1| PrfB [Streptomyces coelicolor]
Length = 368
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEED-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|418475196|ref|ZP_13044622.1| peptide chain release factor 2 [Streptomyces coelicoflavus ZG0656]
gi|371544193|gb|EHN72927.1| peptide chain release factor 2 [Streptomyces coelicoflavus ZG0656]
Length = 352
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 28 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEED-DPDTRAEAESEL 86
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 87 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 147 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 206
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 207 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 255
>gi|21221417|ref|NP_627196.1| peptide chain release factor 2 [Streptomyces coelicolor A3(2)]
gi|289771299|ref|ZP_06530677.1| peptide chain release factor 2 [Streptomyces lividans TK24]
gi|19864260|sp|Q53915.2|RF2_STRCO RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|6912002|emb|CAB72218.1| chain release factor 2 [Streptomyces coelicolor A3(2)]
gi|289701498|gb|EFD68927.1| peptide chain release factor 2 [Streptomyces lividans TK24]
Length = 368
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|118444993|ref|YP_878978.1| peptide chain release factor 2 [Clostridium novyi NT]
gi|118135449|gb|ABK62493.1| peptide chain release factor 2 [Clostridium novyi NT]
Length = 337
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 6/173 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++D +++ LL G D A VT+ +G+ G + W E LL MY RWA+K GY+
Sbjct: 76 EIESIIDNFKVEILLSGEYDKNNAIVTLHSGAGGTDAQDWTEMLLRMYTRWAEKRGYKVD 135
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KSA ++ E+A+GYL E G H L+ N + + + A ++V+P
Sbjct: 136 VLDILPGDEAGIKSANLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVIP 195
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
L+ + D++I +DL + + G+ + A I HIPTGI V+ +
Sbjct: 196 E-LKENQDIEIKADDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQS 247
>gi|293375591|ref|ZP_06621865.1| peptide chain release factor 2 [Turicibacter sanguinis PC909]
gi|325836763|ref|ZP_08166230.1| peptide chain release factor 2 [Turicibacter sp. HGF1]
gi|292645808|gb|EFF63844.1| peptide chain release factor 2 [Turicibacter sanguinis PC909]
gi|325491141|gb|EGC93430.1| peptide chain release factor 2 [Turicibacter sp. HGF1]
Length = 365
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD K+ EV + A+++K VN L + EE + +L +E D L
Sbjct: 45 FWDDQRKAQEV-INAANAIKDKVNTFYSLEGEVEELAVAFELI-LEEPDADLQAELESQI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+VS+ L+++E+ LL GP D A + + G+ G + WAE L MY R+A+++G++
Sbjct: 103 EEVSEHLNKFELEILLSGPYDANNAILELHPGAGGTESQDWAEMLYRMYTRYAERKGFKI 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D + G+KS TI+ + AFGY E G H L+ F +G H + +C DV
Sbjct: 163 EVLDYLVGEEAGIKSVTIKIKGTNAFGYFKAERGVHRLVRISPFDSGGRRHTSFCSC-DV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P F D++I EDL + + G+ + A I HIPT V
Sbjct: 222 MPEF-SGDIDIEIRAEDLKIDTYRASGAGGQHINTTDSAVRITHIPTNTIV 271
>gi|270307933|ref|YP_003329991.1| peptide chain release factor 2 [Dehalococcoides sp. VS]
gi|270153825|gb|ACZ61663.1| peptide chain release factor 2 [Dehalococcoides sp. VS]
Length = 357
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 9/234 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D + V+ KLA + + + L + + + +LA + D L
Sbjct: 34 DFWQDQQNAQRVMKKLAANKRTSELWRGLERRVND---LTELAVLSYEDPSLSNEIEHEI 90
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L+ E+ G D A +T+ AG+ G+ + WA LL M++RWA+K+G+
Sbjct: 91 SGLTAELNSLEVGLAFSGQYDNRNALLTVHAGAGGVESQDWAGMLLRMFMRWAEKKGFGM 150
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D+ + GVKSAT++ + EYA+G+L E G H LI + + A V+++
Sbjct: 151 EILDQSPGEEAGVKSATLQIDGEYAYGFLKSEHGVHRLIRLSPFDADHARHTSFALVEIM 210
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E S D+ I ED+ +F S G+ A I HIP+GI V T
Sbjct: 211 PE-AEDSVDIDIKPEDIKIEMFRSSGPGGQNVQKVSTAVRITHIPSGIVVASQT 263
>gi|417931673|ref|ZP_12575038.1| peptide chain release factor 2 [Propionibacterium acnes
SK182B-JCVI]
gi|340775616|gb|EGR97669.1| peptide chain release factor 2 [Propionibacterium acnes
SK182B-JCVI]
Length = 368
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYKI 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 223 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|206890892|ref|YP_002247867.1| peptide chain release factor 2 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742830|gb|ACI21887.1| peptide chain release factor 2 [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 287
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 6/189 (3%)
Query: 47 LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIW 106
+AE E Y L K ++ ++ E+ LL+G +D A V+I G+ G + W
Sbjct: 3 IAETEEDGYLLLKDLEEEVENIKSQIEHLEIKLLLKGEHDKNNAIVSIHPGAGGTESQDW 62
Query: 107 AEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF 166
AE L+ MY+RWA+K+G++ +VD + G+K T E +YA+GYL E+G H L+
Sbjct: 63 AEILMRMYLRWAEKKGFKVEIVDLQLGEEAGIKDVTFTVEGQYAYGYLKCESGVHRLVRV 122
Query: 167 P--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACI 221
+ + + A V V+P +E + ++I DED+ F + G+ + A I
Sbjct: 123 SPFDANKRRHTSFAAVSVLPE-IEDNIQVEIKDEDIRVDTFRASGAGGQHVNKVSSAVRI 181
Query: 222 QHIPTGIAV 230
HIPTGI V
Sbjct: 182 VHIPTGIIV 190
>gi|422539085|ref|ZP_16614958.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA1]
gi|422579243|ref|ZP_16654766.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA4]
gi|313764090|gb|EFS35454.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA1]
gi|314914951|gb|EFS78782.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA4]
Length = 370
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 225 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 273
>gi|345015595|ref|YP_004817949.1| peptide chain release factor 2 [Streptomyces violaceusniger Tu
4113]
gi|344041944|gb|AEM87669.1| Peptide chain release factor 2 [Streptomyces violaceusniger Tu
4113]
Length = 370
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V KL+ + ++LR + ++ +++ +LA E D A
Sbjct: 44 SLWDDPENAQKVTSKLSYLQGHLRRAEELRGRIDDLEVLFELAADEG-DADARAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K +D+ E+ LL G D A V ++A + G+ +AEQL MY+RWA++ GY+
Sbjct: 103 EAVRKAVDEMEVRTLLSGEYDSREALVNVRAEAGGVDAADFAEQLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 QIYETSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|150015324|ref|YP_001307578.1| peptide chain release factor 2 [Clostridium beijerinckii NCIMB
8052]
gi|149901789|gb|ABR32622.1| peptide chain release factor 2 [Clostridium beijerinckii NCIMB
8052]
Length = 324
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ EV K + + L+ + E+ +++ ++ ME D +
Sbjct: 6 FWDNIKKAEEVTKKSKSIKDKIESFDKLKSQIEDIEVLKEI--MEDDDEESANEIIQTLR 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ +D Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 DIQAQIDDYNMKVLLCGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSIE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 124 TLDLLPGDEAGIKSVTLKVTGEYAYGYLKAEKGIHRLVRISPYNANGKRQTSFASMEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L D++I +DL + S G+ + A I HIPTG+ V+
Sbjct: 184 -ELTKEQDIEIRSDDLKIDTYRSGGAGGQHVNKTDSAVRITHIPTGVVVQ 232
>gi|217967791|ref|YP_002353297.1| peptide chain release factor 2 [Dictyoglomus turgidum DSM 6724]
gi|217336890|gb|ACK42683.1| peptide chain release factor 2 [Dictyoglomus turgidum DSM 6724]
Length = 330
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 10/229 (4%)
Query: 8 WDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLD 67
WD+ K +L K K + + + L+ EE L E E +Y ++
Sbjct: 8 WDNSEKVKPILTKFNKLQKEIESWEKLKTDIEELSEWKDLLE-EGDEYKEEFEKKLKEVE 66
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
S L +E+ +L+ P+D A +++ AG+ G + W E LL MY+RWA+++GY+ ++
Sbjct: 67 KS--LKNFEIEMVLQDPHDEANAVLSLHAGTGGTDAQDWTEILLRMYIRWAERKGYQVKI 124
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+D + G+KSAT+ E + A+GYL GE G H L+ + + + A V+V+P
Sbjct: 125 LDISPGEEAGIKSATLLIEGDKAYGYLKGEKGVHRLVRISPFDANHRRHTSFALVEVIPE 184
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E++ ++I EDL F + G+ + + A I HIPTGI V+
Sbjct: 185 LPEST--IEIKPEDLKIETFRAGGAGGQHVNKVESAVRITHIPTGIVVQ 231
>gi|386840528|ref|YP_006245586.1| peptide chain release factor 2 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100829|gb|AEY89713.1| peptide chain release factor 2 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793821|gb|AGF63870.1| peptide chain release factor 2 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 368
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAEEEN-DPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELIETSYAEEAGIKSTTFAVHSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V
Sbjct: 223 PV-VEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|365963048|ref|YP_004944614.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965288|ref|YP_004946853.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974221|ref|YP_004955780.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn33]
gi|365739729|gb|AEW83931.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741969|gb|AEW81663.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744220|gb|AEW79417.1| peptide chain release factor 2 [Propionibacterium acnes TypeIA2
P.acn33]
Length = 367
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 102 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 162 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 222 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 270
>gi|302521474|ref|ZP_07273816.1| peptide chain release factor 2 [Streptomyces sp. SPB78]
gi|318056789|ref|ZP_07975512.1| peptide chain release factor 2 [Streptomyces sp. SA3_actG]
gi|318081122|ref|ZP_07988454.1| peptide chain release factor 2 [Streptomyces sp. SA3_actF]
gi|302430369|gb|EFL02185.1| peptide chain release factor 2 [Streptomyces sp. SPB78]
Length = 371
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA E D + A +
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFELAADEG-DADTQEEAEQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDSREAVVTIRAEAGGVDASDFAERLQRMYLRWAERLGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|333024883|ref|ZP_08452947.1| putative peptide chain release factor 2 [Streptomyces sp. Tu6071]
gi|332744735|gb|EGJ75176.1| putative peptide chain release factor 2 [Streptomyces sp. Tu6071]
Length = 373
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA E D + A +
Sbjct: 46 SLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFELAADEG-DADTQEEAEQEL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 105 AAVRKALDEMEVRTLLSGEYDSREAVVTIRAEAGGVDASDFAERLQRMYLRWAERLGYKT 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 165 ELYETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 225 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 273
>gi|375137430|ref|YP_004998079.1| peptide chain release factor 2 [Mycobacterium rhodesiae NBB3]
gi|359818051|gb|AEV70864.1| peptide chain release factor 2 [Mycobacterium rhodesiae NBB3]
Length = 371
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD +++ +V +L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 43 NLWDDQSRAQKVTSELSHTQGELRRVEELRQRLDDLPVLYELA-AEEDGAGASEAEAEAD 101
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL L+ E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++
Sbjct: 102 AELKKLREDLEAMEVRTLLSGEYDAREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 162 YGVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ ET+ ++I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-TETTDHIEIPESDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|302534760|ref|ZP_07287102.1| peptide chain release factor 2 [Streptomyces sp. C]
gi|302443655|gb|EFL15471.1| peptide chain release factor 2 [Streptomyces sp. C]
Length = 369
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA+ E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLAVLFELAQ-EMDDADTLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 VSVRKALDEMEVRTLLSGEYAEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +ETS ++I + +L ++ + G+ + A I HIPTGI V
Sbjct: 223 PV-VETSDHVEIDESELRVDVYRASGPGGQGVNTTDSAVRITHIPTGIVV 271
>gi|385810075|ref|YP_005846471.1| protein release subunit factor B [Ignavibacterium album JCM 16511]
gi|383802123|gb|AFH49203.1| Protein chain release factor B [Ignavibacterium album JCM 16511]
Length = 351
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 13/231 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKA---EEAKLIAQLAEMEAIDYGLFKRAY 62
+ W D + ++L ++ V K + KA EE L+AQ+ E E+ + + K
Sbjct: 28 DFWTDQKSAQQILQEIKSLQSWVELWKSVHQKASAVEETILLAQMEEDESFEEEIDKEL- 86
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ K +++ E +L G +D + +TI +G+ G + WAE LL MY+RW +K G
Sbjct: 87 ---AELEKAIEEAEFKNMLSGKDDDKNCILTIHSGAGGTEAQDWAEMLLRMYLRWGEKNG 143
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ ++D G+KSAT+E E +A+GYL E G H L+ + + + A V
Sbjct: 144 YKMTIIDMLEGDGAGIKSATVEVEGPFAYGYLKAENGVHRLVRISPFDANKRRHTSFASV 203
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
V+P ++ S +++I+ DL + S G+ + + A I HIPTGI
Sbjct: 204 FVIPE-IDDSIEIEINPADLKIDTYRSGGKGGQNVNKVETAVRITHIPTGI 253
>gi|339499853|ref|YP_004697888.1| peptide chain release factor 2 [Spirochaeta caldaria DSM 7334]
gi|338834202|gb|AEJ19380.1| Peptide chain release factor 2 [Spirochaeta caldaria DSM 7334]
Length = 369
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 28/240 (11%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAK-LIAQLAEMEAIDYGLFKRAYRA 64
+ W+DP+K+ KV+N +K L+ + E K L+A++ ++E + Y L +
Sbjct: 44 DFWNDPSKAE----------KVMNEIKALKTRYEPWKALVAEIEDLEVL-YQLASAEHDE 92
Query: 65 SL---------DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
S D+ K ++ + +L+ G D +T+ AG+ G WA+ L MY+
Sbjct: 93 SHAPEIEATFKDIQKRFEKQNLVELMSGEVDQSSCFLTVHAGAGGTEACDWAQMLYRMYL 152
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA++ G+ VD + GG+KS T++ E +YA+GYL GETG H L+ + +
Sbjct: 153 RWAERRGFSIEEVDMLEAE-GGIKSVTVKIEGDYAYGYLKGETGVHRLVRISPFDANARR 211
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V V P+ L+ S +++I EDL + S G+ + A + H+PTGI V
Sbjct: 212 HTSFASVYVFPV-LDDSIEVEIRPEDLRIDTYRSGGAGGQHVNKTDSAVRLTHLPTGIVV 270
>gi|308271179|emb|CBX27788.1| Peptide chain release factor 2 [uncultured Desulfobacterium sp.]
Length = 344
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 13/239 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++ N W++ K+ +L + V + K L EE +++ LA I+ K
Sbjct: 17 LISKDNFWENHDKATPLLKERTFISGKVESFKSLLKDLEECEILYSLA----IEESDSKT 72
Query: 61 AYRASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
S+ + KL +++ + +L G +D+ A V+I AG+ G + W+E L MY RW
Sbjct: 73 IEEVSVQIQKLKEKINKLSLLLMLDGEDDINNAIVSINAGAGGTEAQDWSEILFRMYSRW 132
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
+K+G++ ++D G+KS TI E +YA+GYL E G H L+ N +
Sbjct: 133 IEKKGFKSTIIDFQPGDEAGIKSVTITVEGDYAYGYLKTEIGVHRLVRISPFNANGKRHT 192
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A V V P L+ S ++ I ++DL +F S G+ + A I H+PTGI V+
Sbjct: 193 SFASVFVYPE-LDNSIEIDIDEKDLRIDIFRSSGAGGQHVNKTSSAIRITHLPTGIVVQ 250
>gi|307243612|ref|ZP_07525755.1| peptide chain release factor 2 [Peptostreptococcus stomatis DSM
17678]
gi|306492981|gb|EFM64991.1| peptide chain release factor 2 [Peptostreptococcus stomatis DSM
17678]
Length = 348
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 22/240 (9%)
Query: 6 NLWDDPTKSNEVL-------VKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI--DYG 56
+ W+D KSN++L V+L +++ +++D+ ++ +L+E ++ D
Sbjct: 24 DFWEDTDKSNKILQENKTIEVRLTQYSQLITSIEDI-------NILLELSEEDSTEEDQE 76
Query: 57 LFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+ D + LD+ M L G D A +++ +G+ G+ + WA+ LL MY+R
Sbjct: 77 IENSIIDQVKDARENLDRMTMEMLFSGQYDSNNAILSVNSGTGGLDAQDWAQMLLRMYIR 136
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHE 174
W++ GY+ +++D G+K+ATI + + A+G+L E G H L+ + S
Sbjct: 137 WSESSGYKVKLIDINSDPEAGIKTATILVQGQNAYGHLKSEKGVHRLVRISPFDSSGKRH 196
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A +DVVP L ++I+ DL + S G+ + A I HIPTGI V+
Sbjct: 197 TSFASIDVVP-ELNEDIKVEINQTDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 255
>gi|168215798|ref|ZP_02641423.1| peptide chain release factor 2 [Clostridium perfringens NCTC 8239]
gi|182382266|gb|EDT79745.1| peptide chain release factor 2 [Clostridium perfringens NCTC 8239]
Length = 323
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D +
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAQEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 232
>gi|292492472|ref|YP_003527911.1| hypothetical protein Nhal_2436 [Nitrosococcus halophilus Nc4]
gi|291581067|gb|ADE15524.1| hypothetical protein Nhal_2436 [Nitrosococcus halophilus Nc4]
Length = 365
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ + + A VV L L EE I +L E+ A++ G A S
Sbjct: 45 SVWNEPERAQRLGQERAQLQAVVGPLAAL---GEEIGQIKELFEL-AVEEGDEDTAREVS 100
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ + L++ E ++ G D A + I+AGS G + WA LL MY+RW +K G
Sbjct: 101 AELETMEQRLEKLEFQRMFAGEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWGEKHG 160
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ + + + G+KSATI FE EYAFG+L ETG H L+ F +G+ H + A
Sbjct: 161 FKTELTEVSAGEVAGIKSATIRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFAS 219
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V V P ++ D++I+ DL + + G+ + A I H+P+ I V+
Sbjct: 220 VFVYPE-VDERIDIEINPADLRIDTYRAAGAGGQHVNRTDSAVRITHLPSNIVVQ 273
>gi|442805591|ref|YP_007373740.1| peptide chain release factor 2 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741441|gb|AGC69130.1| peptide chain release factor 2 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 339
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD S ++L + + ++ L+ E+ + +LA +E D +F
Sbjct: 17 FWDDIENSQKILQRSKNLRDKLDGFNKLKTDCEDLLTLVELA-LEEKDESVFDEVESNFK 75
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++ ++ LL+G D A T+ AG+ G W + LL MY RWA+ Y R
Sbjct: 76 EIKSRFEKLKLQTLLKGEYDKNDAIFTLHAGAGGTEAMDWVQMLLRMYTRWAENNNYETR 135
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KS T+E + E A+G+L E G H L+ + S + A ++V+P
Sbjct: 136 ILDLLEGEEAGIKSVTVEVKGENAYGFLKSEKGVHRLVRISPFDASGRRHTSFASMEVLP 195
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + S ++ I ED+ +F + G+ + A + HIPTGI V
Sbjct: 196 V-MNDSDEIHIDPEDIKMDVFRASGAGGQHVNKTSSAVRLTHIPTGIVV 243
>gi|415883540|ref|ZP_11545569.1| Protein chain release factor B [Bacillus methanolicus MGA3]
gi|387591335|gb|EIJ83652.1| Protein chain release factor B [Bacillus methanolicus MGA3]
Length = 327
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A+ LK +VN D+ E +L +L + E D L + +
Sbjct: 5 DFWDDQQKA-QAIINEANGLKDLVNEFNDMNETLENLELTYELVKEEN-DAELQEELEKE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++K ++Q+E+ LL P D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 63 LKDLTKRVNQFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKKGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGIKSVTLAIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P F +++I EDL + S G+ + A I HIPTGI V
Sbjct: 182 VMPEF-NDEIEIEIRPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVV 232
>gi|108804456|ref|YP_644393.1| peptide chain release factor 2 [Rubrobacter xylanophilus DSM 9941]
gi|108765699|gb|ABG04581.1| bacterial peptide chain release factor 2 (bRF-2) [Rubrobacter
xylanophilus DSM 9941]
Length = 366
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDDP ++ V + + + + +++LR + E++ + +LAE D L + R
Sbjct: 42 GFWDDPDRAKGVAAEFSRTEDRLKLMEELRGRLEDSSELLELAEG---DRELLEEVEREL 98
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +++ E+++L G D A +TI +G+ G+ + WAE L MY RWA++ G+
Sbjct: 99 EGIERRIEEQEVARLFTGEYDEGDAILTINSGAGGVDSQDWAEMLARMYRRWAERRGFGL 158
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V++ + G+KSAT YAFG LS E G H L+ + S + A V V
Sbjct: 159 EVIEYTEGEEAGIKSATFSVSGPYAFGLLSAERGVHRLVRISPFDASSRRHTSFASVAVA 218
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ + +++I ++DL + + G+ + A I H+PTGI V+
Sbjct: 219 PA-IDDAVEVEIDEKDLKVDTYRASGAGGQHVNKTDSAVRITHLPTGIVVQ 268
>gi|455649556|gb|EMF28360.1| peptide chain release factor 2 [Streptomyces gancidicus BKS 13-15]
Length = 368
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRSRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TSVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELIETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|390563062|ref|ZP_10245205.1| Peptide chain release factor 2 (RF-2) [Nitrolancetus hollandicus
Lb]
gi|390172370|emb|CCF84525.1| Peptide chain release factor 2 (RF-2) [Nitrolancetus hollandicus
Lb]
Length = 344
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 15/233 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W+D + V+ +L+ V+ L +A + + +L E+ D L S
Sbjct: 19 NFWNDAQAAQRVMRRLSGLRGQVDRWDGLSRQAAD---LQELTELAGEDESLLAEI---S 72
Query: 66 LDVSKLLDQYEMSKLLR---GPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ +++LD +L GP D A + + AG+ G+ + WAE LL MY+RWA + G
Sbjct: 73 EETARILDSLSQLELELLLTGPYDDSDAILAVHAGTGGVDAQDWAEMLLRMYLRWAGRSG 132
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
++ +V+D + G+KSATIE A+GY E G H L+ + + A V
Sbjct: 133 FQTQVLDVTEGEEAGIKSATIEIRGANAYGYAKAEAGTHRLVRLSPFDAAHRRHTAFALV 192
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P +E D++I D+DL + S G+ + A I H+PTGI V
Sbjct: 193 EVLPQ-VEEGADVEIRDDDLRVDTYRSSGAGGQHVNKTDSAVRITHLPTGIVV 244
>gi|54026461|ref|YP_120703.1| peptide chain release factor 2 [Nocardia farcinica IFM 10152]
gi|76363350|sp|Q5YR52.1|RF2_NOCFA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|54017969|dbj|BAD59339.1| putative peptide chain release factor 2 [Nocardia farcinica IFM
10152]
Length = 372
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI----------AQLAEMEAIDY 55
+LW+D + V +L+ + + ++DLR + E+ ++ A+ A +E D
Sbjct: 43 DLWNDQDHAQRVTSELSHAQGELRRVEDLRRRLEDLPVLYELAEGEEGEARTAALEEAD- 101
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
A RA+L ++ E+ LL G D A V I++G+ G+ WAE L+ MY+
Sbjct: 102 -----AERAALHSD--VEAMEVRTLLSGEYDKREALVNIRSGAGGVDAADWAEMLMRMYI 154
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWAD+ GY V D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 155 RWADRHGYPVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLVRISPFDNQGRR 214
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+V+P+ +ET+ +++ + ++ ++ S G+ + A I HIPTGI V
Sbjct: 215 QTSFAEVEVLPV-VETTDHIEVPETEIRVDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 273
>gi|78485070|ref|YP_390995.1| peptide chain release factor 2 [Thiomicrospira crunogena XCL-2]
gi|78363356|gb|ABB41321.1| bacterial peptide chain release factor 2 (bRF-2) [Thiomicrospira
crunogena XCL-2]
Length = 332
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 117/231 (50%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+DP ++ + + + VV ++DL E A I ++AEM+A D +
Sbjct: 13 VWNDPERAQALGKEKSQLDNVVTTIQDLESSLESAHEILEMAEMDA-DQEMVDEVVSELA 71
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + L+Q E ++ G D + I+AGS G + WA +L MY+RWA+ G++
Sbjct: 72 RLEEKLEQLEFQRMFSGELDANNCYLEIQAGSGGTEAQDWANMILRMYLRWAESHGFKAE 131
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ G+K AT+ + +YAFG+L ETG H L+ F +G+ H + A V +
Sbjct: 132 ILEISAGDVAGIKGATVHVQGDYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVFIS 190
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ S +++I+ DL ++ + G+ + + A I H+PT +
Sbjct: 191 P-EIDDSFEVEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNTVTQ 240
>gi|302544934|ref|ZP_07297276.1| peptide chain release factor 2 [Streptomyces hygroscopicus ATCC
53653]
gi|302462552|gb|EFL25645.1| peptide chain release factor 2 [Streptomyces himastatinicus ATCC
53653]
Length = 370
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V KL+ + ++LR + ++ +++ +LA E + + +
Sbjct: 44 SLWDDPENAQKVTSKLSYLQGHLRRAEELRGRIDDLEVLFELAADEGDEDARAEAEAELN 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K +D+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ GY+
Sbjct: 104 A-VRKAVDEMEVRTLLSGEYDAREAVVNIRAEAGGVDAADFAEQLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|262198721|ref|YP_003269930.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262082068|gb|ACY18037.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
Length = 378
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ + L +L VV + L K +A ++ +LAE +A D A A+
Sbjct: 55 FWDNRQKAEDSLRELKSIKDVVGSYDKLSSKLADAVVLLELAE-DAEDAESAIEARTAAE 113
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ + LD+ E ++L G D GA + I +G+ G+ WA+ LL M +R+AD +G++
Sbjct: 114 EIERSLDELEFRRMLSGEYDQGGAVLQINSGAGGVDAADWAQMLLRMILRYADHKGWKAE 173
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D+ + G+KSAT+ EYA+G L E G H L+ + + + A V V P
Sbjct: 174 VLDEQAAEEAGIKSATLVITGEYAYGLLKAEMGVHRLVRISPFDAQARRQTSFAAVTVSP 233
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ S + I + +L ++ + G+ + + A I H+P+GI V+
Sbjct: 234 -DIDDSVHVDIDEGELRIDVYRAGGAGGQHVNKTESAVRITHLPSGIVVQ 282
>gi|295836903|ref|ZP_06823836.1| peptide chain release factor 2 [Streptomyces sp. SPB74]
gi|295826265|gb|EFG64762.1| peptide chain release factor 2 [Streptomyces sp. SPB74]
Length = 371
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA E D + A +
Sbjct: 44 SLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFELAADEG-DADTQEEAEQEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDSREAVVTIRAEAGGVDASDFAERLQRMYLRWAERLGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFAVHTPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|418047786|ref|ZP_12685874.1| Peptide chain release factor 2 [Mycobacterium rhodesiae JS60]
gi|353193456|gb|EHB58960.1| Peptide chain release factor 2 [Mycobacterium rhodesiae JS60]
Length = 371
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME--AIDYGLFKRAYR 63
NLW+D + + +V +L+ + + +++LR + E+ ++ +LA E A A
Sbjct: 43 NLWNDQSHAQKVTSELSHAQGELRRVEELRQRVEDLPVLYELAAEEDGAGGAEALAEADA 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 103 ELTKLREDVEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQNRRQTSFADVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ +ET+ ++I + DL ++ S G+ + A + HIPTGI V
Sbjct: 223 VLPV-VETTDHIEIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|422555869|ref|ZP_16631631.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA2]
gi|314986213|gb|EFT30305.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA2]
Length = 371
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDASDFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 226 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 274
>gi|153956213|ref|YP_001396978.1| peptide chain release factor 2 [Clostridium kluyveri DSM 555]
gi|219856538|ref|YP_002473660.1| hypothetical protein CKR_3195 [Clostridium kluyveri NBRC 12016]
gi|146349071|gb|EDK35607.1| PrfB [Clostridium kluyveri DSM 555]
gi|219570262|dbj|BAH08246.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 328
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W+D + ++ + + +N L + E+A+++ ++ + E D F+ +
Sbjct: 5 NFWNDIDNAQKIASEEKNLEGRLNRYDLLSHNIEDARILLEIIKEEE-DSMSFQEVMKDI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ ++ + LL G D A + + G G + W E LL MY+RWA+K GY+
Sbjct: 64 KDIEFQVEIFRTEILLCGEYDKNNAILNLHVGVGGTDAQDWTEMLLRMYIRWAEKMGYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D ++ G+KS ++ E+A+GYL E G H L+ N + + + A V+V+
Sbjct: 124 NIIDMLEAEDAGIKSVSLSIIGEFAYGYLKSEKGIHRLVRISPFNANGKRQTSFASVEVL 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L D++I EDL F + G+ + + A I HIPTGI V+
Sbjct: 184 PE-LTGDQDIEIRSEDLKVDTFRAGGAGGQHVNKTESAVRITHIPTGIVVQ 233
>gi|160893549|ref|ZP_02074333.1| hypothetical protein CLOL250_01103 [Clostridium sp. L2-50]
gi|156864534|gb|EDO57965.1| peptide chain release factor 2 [Clostridium sp. L2-50]
Length = 329
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 110/233 (47%), Gaps = 13/233 (5%)
Query: 7 LWDDPTKSNEV---LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD KS V L KL DSL+ + L + + + Q+AE E D + +
Sbjct: 6 FWDDVAKSTSVSRQLKKLQDSLE---EYQKLEQDFSDIETLIQMAEEEG-DSSMIEEIGE 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
K + Y +S LL G D A +T+ AG+ G W L MY RWA+K G+
Sbjct: 62 MLTAFQKEFENYRISLLLSGEFDGYDAVMTLHAGAGGTESCDWTSMLYRMYTRWAEKHGF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ V+D G+KS TI+ + A+GYL E G H L+ N + + + A D
Sbjct: 122 KVEVLDYLEGDEAGIKSVTIQISGQNAYGYLKSEKGVHRLVRISPFNAAGKRQTSFASCD 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P +E ++ I+++DL + S G+ + A I HIPTGI V+
Sbjct: 182 VIPE-IEEDLEVDINEDDLRIDTYRSSGAGGQHINKTSSAVRITHIPTGIVVQ 233
>gi|20807024|ref|NP_622195.1| protein chain release factor B [Thermoanaerobacter tengcongensis
MB4]
gi|20515510|gb|AAM23799.1| Protein chain release factor B [Thermoanaerobacter tengcongensis
MB4]
Length = 347
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D KS E+ K +++ + L + E+ + +L +E D + + R
Sbjct: 24 SFWSDLKKSQELSKKQKALKELLEEYESLLSRCEDLYTLIELG-LEEGDESIAEEVEREY 82
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K ++ ++ LL GP D A ++I AGS G + WAE LL MY RWA+ +G+
Sbjct: 83 KELKKEVENLKIRTLLSGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRWANDKGFEV 142
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT+ + +A+GYL GE G H L+ + + + A V+V+
Sbjct: 143 EILDYLEGEEAGIKSATLLIKGPFAYGYLKGEAGVHRLVRISPFDAAGRRHTSFALVEVI 202
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P LE +++I EDL F + G+ + + A I H+PTGI V
Sbjct: 203 PE-LEDDIEIEIRPEDLKIDTFRASGAGGQHVNKTESAVRITHLPTGIVV 251
>gi|158321505|ref|YP_001514012.1| peptide chain release factor 2 [Alkaliphilus oremlandii OhILAs]
gi|158141704|gb|ABW20016.1| peptide chain release factor 2 [Alkaliphilus oremlandii OhILAs]
Length = 340
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 8/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP + VL K + L E+ +++ ++ +E D K +
Sbjct: 16 DFWNDPENAQSVLKKAKGYRDTIEEYNQLHVDHEDLEMM--ISFIEDGDESFQKDLLKGL 73
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +++ LL+G D A ++I AG+ G+ + WA+ LL MY RWA+ +GY
Sbjct: 74 EALENRVREIKIATLLKGEYDKNNAIISIHAGTGGLDAQDWAKMLLRMYTRWAEDKGYGV 133
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ +D G+KS T+ E A+GYL E G H L+ + S + A VDV+
Sbjct: 134 KTLDILTDTEAGIKSVTLLIEGMNAYGYLKAEKGVHRLVRISPFDSSGKRHTSFASVDVM 193
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ S D+QI+ DL + + G+ + A I HIPTGI V+
Sbjct: 194 P-EIDDSVDIQINPNDLRIDTYRASGSGGQHVNKTDSAVRITHIPTGIVVQ 243
>gi|377572554|ref|ZP_09801639.1| peptide chain release factor 2 [Gordonia terrae NBRC 100016]
gi|377530326|dbj|GAB46804.1| peptide chain release factor 2 [Gordonia terrae NBRC 100016]
Length = 371
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK----RA 61
+LW+D + +V +L+ + + + +LR + E+ ++ +LA+ E D + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVLYELADAEEGDDKVAALADADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R SL + E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 103 ERESLRTD--IQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|288575018|ref|ZP_06393375.1| peptide chain release factor 2 [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570759|gb|EFC92316.1| peptide chain release factor 2 [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 336
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 11/204 (5%)
Query: 35 RYKAEEAKLIAQLAEM--EAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASV 92
R +E L+ LAE+ E D L + S +SK +D + M LL G D A +
Sbjct: 42 RMSSEYQDLVV-LAELLDEEDDQELEAEFFSRSESLSKSMDAFSMELLLNGDYDGNNAIM 100
Query: 93 TIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFG 152
T+ AGS G+ + WAE L MY+RW + Y+ +++D + GG+K+ T+ E ++A+G
Sbjct: 101 TVHAGSGGLDSQDWAEMLYRMYLRWCESNHYKTKILDYQRDEEGGIKTVTLLVEGDFAYG 160
Query: 153 YLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPS 206
YL E G H L+ F H + A VDV P L ++ I EDL F +
Sbjct: 161 YLQSEVGVHRLVRISPFDTAKRRH-TSFASVDVAPE-LPDDVEVDIRTEDLRIDTFRASG 218
Query: 207 LPGERQSIAKPAACIQHIPTGIAV 230
G+ ++ A I HIPTGI V
Sbjct: 219 AGGQHVNMTDSAVRITHIPTGIVV 242
>gi|408501432|ref|YP_006865351.1| peptide chain release factor 2 [Bifidobacterium asteroides PRL2011]
gi|408466256|gb|AFU71785.1| peptide chain release factor 2 [Bifidobacterium asteroides PRL2011]
Length = 377
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD + +V +L+ + L+ + ++ + + +L E D A +
Sbjct: 45 LWDDQENAQKVTSRLSALQSQLKHLESASSRLDDVQALEELGREEH-DQDTLVEARKEID 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L E+ LL G D A VTI++G+ G+ WA+ LL MY+RWA++ G+ +
Sbjct: 104 SLRSDLADMEIQTLLDGEYDERAAVVTIRSGAGGVDAADWAQMLLRMYMRWAERHGFSTK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+V+P
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVIP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
L +E + + I D D+ + S G+ + A I H+PT I V
Sbjct: 224 L-VEPTDHIDIPDSDIRVDTYCSSGPGGQGVNTTYSAVRITHLPTNIVV 271
>gi|376250835|ref|YP_005137716.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC03]
gi|372112339|gb|AEX78398.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC03]
Length = 369
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A L
Sbjct: 44 LWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAEL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
DV L E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 104 TADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHK 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V
Sbjct: 160 VDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|399923642|ref|ZP_10781000.1| hypothetical protein Prhi1_00305 [Peptoniphilus rhinitidis 1-13]
Length = 371
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + +++ + K ++ +L +A+ + +L E+E DY +
Sbjct: 47 FWDDNDSAQKIINETNSYQKKIDQYDELNKLITDAEDLIELMEIEE-DYSSYDDFRNLVE 105
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K +++++ LL G D A ++I AG+ G + WA LL MY R+A+ +G++
Sbjct: 106 EIEKKTTEFKLNTLLNGEYDSHNAILSIHAGAGGTEAQDWASMLLRMYSRYAENKGFKIE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D G+KS T++ + A+GYL GE G H L+ F + H + + VDV
Sbjct: 166 TLDILKEDEAGIKSVTLKISGDNAYGYLKGEKGVHRLVRISPFDSNKRRH-TSFSSVDVF 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ D++I +E+L + S G+ + A I HIPTGI V+
Sbjct: 225 PE-LDDDTDVEIKEEELKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 274
>gi|333980674|ref|YP_004518619.1| peptide chain release factor 2 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333824155|gb|AEG16818.1| peptide chain release factor 2 [Desulfotomaculum kuznetsovii DSM
6115]
Length = 366
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+DP ++ +V KLA V ++L E+ L+ L E + R L
Sbjct: 44 FWNDPEQAQQVTQKLAALKDRVAQYRELARVQED--LVVLLDLGEEEEDETVAREVAGEL 101
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ +++ E+ LL GP D A V++ AG+ G + W E LL MY RWA+++GYR
Sbjct: 102 KKLARRVEKMELEVLLSGPYDRGNAIVSLHAGAGGTEAQDWVEMLLRMYTRWAEEKGYRV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KS T A+GYL E G H L+ + + + A VDV+
Sbjct: 162 TIMDMLPGDEAGIKSVTFSVAGPNAYGYLRAEKGVHRLVRISPFDAAGRRHTSFASVDVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E L+I EDL F S G+ + + A I H+PTGI V+
Sbjct: 222 P-EVEEDVQLEIRPEDLKIDTFRSSGAGGQHVNKTESAVRITHLPTGIVVQ 271
>gi|406998514|gb|EKE16445.1| hypothetical protein ACD_11C00017G0035 [uncultured bacterium]
Length = 331
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 12/230 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D + E + +L V ++L +E + LAE + K+A
Sbjct: 12 FWNDAQSAGETMKELEALKSKVLKFENLEKNIKELGELVDLAESAKDKKDIEKQA----- 66
Query: 67 DV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K +++ E L G D ++I +G+ G+ + WAE LL MY+R+A+K ++
Sbjct: 67 DVLQKEIEELEFQALFSGEYDRNDVILSIHSGAGGVDAQDWAEMLLRMYLRFAEKNNFKT 126
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D+ + G+KSAT+E + YA+G L GE G H L+ N + + A V+++
Sbjct: 127 NVIDQSRGQEAGIKSATVEIKGNYAYGNLKGEAGVHRLVRLSPFNSDNLRQTSFALVEIL 186
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E S +++I ++DL ++ S G+ + A + HIPTG V
Sbjct: 187 PIISEIS-EVKIEEKDLRVDVYRSSGAGGQSVNTTDSAVRVTHIPTGTVV 235
>gi|332295608|ref|YP_004437531.1| peptide chain release factor 2 [Thermodesulfobium narugense DSM
14796]
gi|332178711|gb|AEE14400.1| peptide chain release factor 2 [Thermodesulfobium narugense DSM
14796]
Length = 363
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 13/233 (5%)
Query: 4 NYNLWDDPTKSNEVLVKLADSL-KVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
N +W D KS+ L +LAD+L K ++ +L E+ L E D G
Sbjct: 38 NPEIWQDVQKSSN-LTQLADNLQKSIDEWNNLNSSFEDF-----LFWTEFQDEGAENEIA 91
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ ++ K+L++ E+ LL G D A ++I AG+ G+ + +AE LL MY+RW +K
Sbjct: 92 ESYKNLVKILEELEVKALLSGKYDSYDAMLSISAGAGGVDAQDFAEMLLRMYIRWGEKNK 151
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPH--EATLACV 180
Y +VD+ G++SATI F+ +Y++G+L E G H LI F + + V
Sbjct: 152 YSVELVDQSPGDEAGIRSATIFFKGKYSYGFLKSEQGVHRLIRLSPFDFNNRRHTSFVLV 211
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V PL +E ++ + +E++ F + G+ + A I H+PTGI V
Sbjct: 212 EVTPL-IENVKEINVKNEEIKIETFRASGAGGQHVNKTDSAVRITHLPTGIVV 263
>gi|297620623|ref|YP_003708760.1| Peptide chain release factor 2 [Waddlia chondrophila WSU 86-1044]
gi|297375924|gb|ADI37754.1| Peptide chain release factor 2 [Waddlia chondrophila WSU 86-1044]
gi|337292373|emb|CCB90402.1| peptide chain release factor 2 [Waddlia chondrophila 2032/99]
Length = 326
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + +V+ ++ + K+L+ + E+ K + AE EA D GL +
Sbjct: 6 FWDDPDAAQQVITEINSLKQWTIPCKELKRRLEDVKELQPEAE-EAGDEGLLADLNQELF 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L + E+ ++L G D + ++I AG+ G W E L MY RW DK ++
Sbjct: 65 RIENELGELEIRRMLSGELDNKNCYLSINAGAGGTEACDWVEMLSRMYQRWCDKRKWKCE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
VVD + G KS T++ +AFGY E G H L+ F +GS H + A VDV
Sbjct: 125 VVDMVPGEVAGTKSVTLKMTGNFAFGYSKAEKGVHRLVRISPFDSGSRRH-TSFASVDVT 183
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E + D+Q I+ +D+ F + G+ ++ A + HIPTG+ V
Sbjct: 184 P---EITDDIQIEINPDDIRIDTFRASGAGGQHVNVTDSAVRMTHIPTGVVV 232
>gi|296089769|emb|CBI39588.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + ++ + + + +K+L + E + +LA E D L + +A
Sbjct: 141 DLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREEN-DPELESESLKAL 199
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + + E+ LL G +D + ++AG+ G WA ++ MY WA + GY
Sbjct: 200 LGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGV 259
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ + EY+FGY E G H L+ F +G H + A V V
Sbjct: 260 TVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 318
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+P+ + S +QI++ DL F + G+ + + A I HIPTG+
Sbjct: 319 IPILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGV 367
>gi|376242385|ref|YP_005133237.1| peptide chain release factor 2 [Corynebacterium diphtheriae CDCE
8392]
gi|372105627|gb|AEX71689.1| peptide chain release factor 2 [Corynebacterium diphtheriae CDCE
8392]
Length = 369
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 8/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A L
Sbjct: 44 LWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAEL 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 104 TAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKVD 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+P
Sbjct: 162 IYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVLP 221
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 222 V-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|376287261|ref|YP_005159827.1| peptide chain release factor 2 [Corynebacterium diphtheriae BH8]
gi|371584595|gb|AEX48260.1| peptide chain release factor 2 [Corynebacterium diphtheriae BH8]
Length = 369
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 103 LTAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 161 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 221 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|225450605|ref|XP_002277995.1| PREDICTED: peptide chain release factor 2-like [Vitis vinifera]
Length = 434
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + ++ + + + +K+L + E + +LA E D L + +A
Sbjct: 103 DLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREEN-DPELESESLKAL 161
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + + E+ LL G +D + ++AG+ G WA ++ MY WA + GY
Sbjct: 162 LGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGV 221
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ + EY+FGY E G H L+ F +G H + A V V
Sbjct: 222 TVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 280
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+P+ + S +QI++ DL F + G+ + + A I HIPTG+
Sbjct: 281 IPILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGV 329
>gi|443673635|ref|ZP_21138693.1| Peptide chain release factor 2 [Rhodococcus sp. AW25M09]
gi|443413822|emb|CCQ17031.1| Peptide chain release factor 2 [Rhodococcus sp. AW25M09]
Length = 370
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 16/236 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
+LW+D + +V +L+ + + +++LR + E+ ++ +LAE E + A
Sbjct: 43 DLWNDQEHAQQVTSQLSHAQAELRRVEELRQRLEDMPVMYELAEGEEGEAATAATADADA 102
Query: 63 -RASL--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
RASL D++ + E+ LL G D A V I++G+ GI WAE L+ MY+RWA+
Sbjct: 103 ERASLREDIAAM----EVRTLLSGEYDARDALVNIRSGAGGIDAADWAEMLMRMYIRWAE 158
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
K GY V D + G+KSAT + Y +G LS E G H L+ + + +
Sbjct: 159 KHGYGVEVYDTSYAEEAGIKSATFAVKAPYTYGTLSVEQGTHRLVRISPFDNQGRRQTSF 218
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V+V+P+ +ET+ ++I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 AEVEVLPV-VETTDHIEIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|282853672|ref|ZP_06263009.1| peptide chain release factor 2 [Propionibacterium acnes J139]
gi|386071135|ref|YP_005986031.1| peptide chain release factor 2 [Propionibacterium acnes ATCC 11828]
gi|422465572|ref|ZP_16542165.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA4]
gi|422468031|ref|ZP_16544570.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA3]
gi|282583125|gb|EFB88505.1| peptide chain release factor 2 [Propionibacterium acnes J139]
gi|314983205|gb|EFT27297.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA3]
gi|315092426|gb|EFT64402.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA4]
gi|353455501|gb|AER06020.1| peptide chain release factor 2 [Propionibacterium acnes ATCC 11828]
Length = 368
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 223 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|258517064|ref|YP_003193286.1| peptide chain release factor 2 [Desulfotomaculum acetoxidans DSM
771]
gi|257780769|gb|ACV64663.1| bacterial peptide chain release factor 2 (bRF- 2) [Desulfotomaculum
acetoxidans DSM 771]
Length = 366
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 15/233 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY---R 63
WDD ++ ++ + A V+ +LR E+ +++A+LA+ E D L + A +
Sbjct: 44 FWDDQAQAQKISRQQAVLKDSVSLYGELRQSLEDLEVLAELAQEEDDDIALRETAKDLKQ 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L VS+L E+ LL G D A +++ AG+ G + W E LL M+ RWA+ Y
Sbjct: 104 LELRVSEL----ELDVLLSGEYDRGNAIISLHAGAGGTEAQDWVEMLLRMFTRWAEDHRY 159
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
R V+D G+KS T+E AFGYL E G H L+ F H + A V
Sbjct: 160 RVIVLDMLSGDEAGIKSVTVEIVGPNAFGYLKSEKGVHRLVRISPFDTAGRRH-TSFASV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P ++ D++I EDL F + G+ + A I H+PTGI V
Sbjct: 219 EVLP-EVDEDVDIEIKTEDLKIDTFRAGGAGGQHVNKTDSAVRITHLPTGIVV 270
>gi|414872707|tpg|DAA51264.1| TPA: hypothetical protein ZEAMMB73_478053 [Zea mays]
Length = 289
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 100 GICPEI--WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157
G+C + WA+ LL MYVRW +K+ Y+ RVV+K + G+KSAT+E E YA+GYLSGE
Sbjct: 23 GLCSYLADWADMLLRMYVRWGEKQRYKTRVVEKSPGEQAGIKSATVELEGRYAYGYLSGE 82
Query: 158 TGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSI 214
G H ++ N + + A V+V+PL E S + I +EDL S G+ Q++
Sbjct: 83 KGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNV 142
Query: 215 AKPAACIQ--HIPTGIAVR 231
K ++ HIPTGIAVR
Sbjct: 143 NKVETAVRMVHIPTGIAVR 161
>gi|387130322|ref|YP_006293212.1| peptide chain release factor 2 [Methylophaga sp. JAM7]
gi|386271611|gb|AFJ02525.1| Peptide chain release factor 2 [Methylophaga sp. JAM7]
Length = 348
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ ++ + A+ K+V L R ++AK + ++A +E D F A A
Sbjct: 28 DVWNEPERAQKLGQERANLEKLVQTLSGHRDTLDDAKDLLEMA-VEEGDEATFN-AITAD 85
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K L++ E ++ G D A + I+AGS G + WA LL MY+RW + Y+
Sbjct: 86 LDELEKGLEKLEFQRMFSGKLDASSAYLDIQAGSGGTEAQDWANMLLRMYLRWGEANEYK 145
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ G+KSAT+ E EYAFG L ETG H L+ F +G+ H + A V
Sbjct: 146 VELMEVSAGDVAGIKSATVRLEGEYAFGMLRTETGVHRLVRKSPFDSGARRH-TSFASVF 204
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + ++ I+ DL + S G+ + A I HIPT V+
Sbjct: 205 VYP-EVDDTIEIDINPADLRVDTYRSSGAGGQHVNTTDSAVRITHIPTNTVVQ 256
>gi|50842838|ref|YP_056065.1| peptide chain release factor 2 [Propionibacterium acnes KPA171202]
gi|289426937|ref|ZP_06428661.1| peptide chain release factor 2 [Propionibacterium acnes J165]
gi|295130890|ref|YP_003581553.1| peptide chain release factor 2 [Propionibacterium acnes SK137]
gi|335051297|ref|ZP_08544223.1| peptide chain release factor 2 [Propionibacterium sp. 409-HC1]
gi|335053701|ref|ZP_08546532.1| peptide chain release factor 2 [Propionibacterium sp. 434-HC2]
gi|342213500|ref|ZP_08706225.1| peptide chain release factor 2 [Propionibacterium sp. CC003-HC2]
gi|354607317|ref|ZP_09025287.1| peptide chain release factor 2 [Propionibacterium sp. 5_U_42AFAA]
gi|386024313|ref|YP_005942618.1| peptide chain release factor 2 [Propionibacterium acnes 266]
gi|387503733|ref|YP_005944962.1| peptide chain release factor 2 [Propionibacterium acnes 6609]
gi|407935764|ref|YP_006851406.1| peptide chain release factor 2 [Propionibacterium acnes C1]
gi|417929478|ref|ZP_12572862.1| peptide chain release factor 2 [Propionibacterium acnes SK182]
gi|81611548|sp|Q6A808.1|RF2_PROAC RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|50840440|gb|AAT83107.1| peptide chain release factor 2 [Propionibacterium acnes KPA171202]
gi|289159877|gb|EFD08057.1| peptide chain release factor 2 [Propionibacterium acnes J165]
gi|291375816|gb|ADD99670.1| peptide chain release factor 2 [Propionibacterium acnes SK137]
gi|332675771|gb|AEE72587.1| peptide chain release factor 2 [Propionibacterium acnes 266]
gi|333766370|gb|EGL43676.1| peptide chain release factor 2 [Propionibacterium sp. 434-HC2]
gi|333767186|gb|EGL44444.1| peptide chain release factor 2 [Propionibacterium sp. 409-HC1]
gi|335277778|gb|AEH29683.1| peptide chain release factor 2 [Propionibacterium acnes 6609]
gi|340769044|gb|EGR91569.1| peptide chain release factor 2 [Propionibacterium sp. CC003-HC2]
gi|340773601|gb|EGR96093.1| peptide chain release factor 2 [Propionibacterium acnes SK182]
gi|353557432|gb|EHC26801.1| peptide chain release factor 2 [Propionibacterium sp. 5_U_42AFAA]
gi|407904345|gb|AFU41175.1| peptide chain release factor 2 [Propionibacterium acnes C1]
gi|456738476|gb|EMF63043.1| peptide chain release factor 2 [Propionibacterium acnes FZ1/2/0]
Length = 368
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 223 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|294812911|ref|ZP_06771554.1| Peptide chain release factor 2 [Streptomyces clavuligerus ATCC
27064]
gi|326441313|ref|ZP_08216047.1| peptide chain release factor 2 [Streptomyces clavuligerus ATCC
27064]
gi|294325510|gb|EFG07153.1| Peptide chain release factor 2 [Streptomyces clavuligerus ATCC
27064]
Length = 368
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + ++ ++ +LAE E D A
Sbjct: 44 SLWDDPEAAQKITSRLSHLQAELRKTEALRARIDDLGVLFELAEAED-DADTLAEAETEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDEREALVNIRAEAGGVDASDFAERLQRMYMRWAERHGYAT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S ++I + +L ++ + G+ + A I HIPTGI V
Sbjct: 223 PV-VEQSDHVEIDETELRVDVYRASGPGGQGVNTTDSAVRITHIPTGIVV 271
>gi|376256646|ref|YP_005144537.1| peptide chain release factor 2 [Corynebacterium diphtheriae VA01]
gi|372119163|gb|AEX82897.1| peptide chain release factor 2 [Corynebacterium diphtheriae VA01]
Length = 369
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 12/232 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 43 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
L DV L E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K +
Sbjct: 103 LTADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDH 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ + D + G+KSAT EY +G LS E GAH L+ + + + A ++
Sbjct: 159 KVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIE 218
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 219 VLPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|147834602|emb|CAN69654.1| hypothetical protein VITISV_010541 [Vitis vinifera]
Length = 426
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P + ++ + + + +K+L + E + +LA E D L + +A
Sbjct: 95 DLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREEN-DPELESESLKAL 153
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + + E+ LL G +D + ++AG+ G WA ++ MY WA + GY
Sbjct: 154 LGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGV 213
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ + EY+FGY E G H L+ F +G H + A V V
Sbjct: 214 TVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 272
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+P+ + S +QI++ DL F + G+ + + A I HIPTG+
Sbjct: 273 IPILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGV 321
>gi|163784774|ref|ZP_02179571.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879956|gb|EDP73663.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
Length = 348
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ L++++E+ LL G D + A V+++AGS G+ WAE LL MY+RWA+K GY
Sbjct: 81 NLETLINKFEVESLLSGEYDSKNAIVSVQAGSGGVEACDWAEMLLRMYLRWAEKNGYNVE 140
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+VD G+KSAT + YA+GYL GE G H L+ F + H + A V V+
Sbjct: 141 IVDYQPDDVAGIKSATFIVKGPYAYGYLQGEQGVHRLVRISPFDSNKRRH-TSFAAVSVI 199
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E ++I+++DL F + G+ + A I HIPTGI V
Sbjct: 200 PEIGE-EIKVEINEDDLRIDTFRASGAGGQHVNKTDSAVRITHIPTGIVV 248
>gi|345872419|ref|ZP_08824354.1| peptide chain release factor 2 [Thiorhodococcus drewsii AZ1]
gi|343918967|gb|EGV29724.1| peptide chain release factor 2 [Thiorhodococcus drewsii AZ1]
Length = 365
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 124/232 (53%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+DP+++ + + A VV + ++ +A + ++A EA D L + A L
Sbjct: 46 IWNDPSRAQALGRERATLEAVVLTIDEMTAALTDADELLEMAAEEADDETLT--SLVADL 103
Query: 67 DV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E ++ G D + A V I+AGS G + WAE LL M++RW ++ G++
Sbjct: 104 ETYESRVAELEFRRMFSGEMDSKNAFVDIQAGSGGTEAQDWAEMLLRMFLRWGERRGFKT 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ + G+KSATI FE EYAFG+L ETG H L+ F +G+ H + A + V
Sbjct: 164 ELMEASPGEVAGIKSATIRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASLFV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ S +++I+ DL ++ + G+ + + A I H+PTG+ +
Sbjct: 223 SP-EVDDSVEIEINPADLRIDVYRASGAGGQHVNRTESAVRITHMPTGLVTQ 273
>gi|289425462|ref|ZP_06427239.1| peptide chain release factor 2 [Propionibacterium acnes SK187]
gi|422385819|ref|ZP_16465944.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA3]
gi|422387631|ref|ZP_16467743.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA2]
gi|422392361|ref|ZP_16472431.1| peptide chain release factor 2 [Propionibacterium acnes HL099PA1]
gi|422426188|ref|ZP_16503112.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA1]
gi|422431380|ref|ZP_16508258.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA2]
gi|422449438|ref|ZP_16526163.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA3]
gi|422457000|ref|ZP_16533662.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA1]
gi|422462215|ref|ZP_16538839.1| peptide chain release factor 2 [Propionibacterium acnes HL038PA1]
gi|422475512|ref|ZP_16551959.1| peptide chain release factor 2 [Propionibacterium acnes HL056PA1]
gi|422478600|ref|ZP_16555019.1| peptide chain release factor 2 [Propionibacterium acnes HL007PA1]
gi|422480977|ref|ZP_16557380.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA1]
gi|422483483|ref|ZP_16559872.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA1]
gi|422486233|ref|ZP_16562589.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA2]
gi|422488286|ref|ZP_16564615.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA2]
gi|422490387|ref|ZP_16566702.1| peptide chain release factor 2 [Propionibacterium acnes HL020PA1]
gi|422495434|ref|ZP_16571721.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA1]
gi|422498157|ref|ZP_16574429.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA3]
gi|422501961|ref|ZP_16578206.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA2]
gi|422505918|ref|ZP_16582141.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA2]
gi|422507292|ref|ZP_16583496.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA2]
gi|422513734|ref|ZP_16589857.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA2]
gi|422518949|ref|ZP_16595017.1| peptide chain release factor 2 [Propionibacterium acnes HL074PA1]
gi|422522207|ref|ZP_16598237.1| peptide chain release factor 2 [Propionibacterium acnes HL045PA1]
gi|422527592|ref|ZP_16603582.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA1]
gi|422530188|ref|ZP_16606152.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA1]
gi|422534695|ref|ZP_16610619.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA1]
gi|422537031|ref|ZP_16612919.1| peptide chain release factor 2 [Propionibacterium acnes HL078PA1]
gi|422551888|ref|ZP_16627679.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA3]
gi|422560639|ref|ZP_16636326.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA1]
gi|422568300|ref|ZP_16643918.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA2]
gi|289154440|gb|EFD03128.1| peptide chain release factor 2 [Propionibacterium acnes SK187]
gi|313771879|gb|EFS37845.1| peptide chain release factor 2 [Propionibacterium acnes HL074PA1]
gi|313807112|gb|EFS45607.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA2]
gi|313809604|gb|EFS47340.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA1]
gi|313813321|gb|EFS51035.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA1]
gi|313819308|gb|EFS57022.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA2]
gi|313819957|gb|EFS57671.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA1]
gi|313823250|gb|EFS60964.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA2]
gi|313824962|gb|EFS62676.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA1]
gi|313829923|gb|EFS67637.1| peptide chain release factor 2 [Propionibacterium acnes HL007PA1]
gi|313833072|gb|EFS70786.1| peptide chain release factor 2 [Propionibacterium acnes HL056PA1]
gi|314924796|gb|EFS88627.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA3]
gi|314960646|gb|EFT04748.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA2]
gi|314972908|gb|EFT17005.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA1]
gi|314975668|gb|EFT19763.1| peptide chain release factor 2 [Propionibacterium acnes HL045PA1]
gi|314978052|gb|EFT22146.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA2]
gi|314984148|gb|EFT28240.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA1]
gi|314989571|gb|EFT33662.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA3]
gi|315080944|gb|EFT52920.1| peptide chain release factor 2 [Propionibacterium acnes HL078PA1]
gi|315084867|gb|EFT56843.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA2]
gi|315086040|gb|EFT58016.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA3]
gi|315088241|gb|EFT60217.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA1]
gi|315095727|gb|EFT67703.1| peptide chain release factor 2 [Propionibacterium acnes HL038PA1]
gi|315105991|gb|EFT77967.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA1]
gi|327327935|gb|EGE69709.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA3]
gi|327330072|gb|EGE71825.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA2]
gi|327442693|gb|EGE89347.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA1]
gi|327443908|gb|EGE90562.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA2]
gi|327443976|gb|EGE90630.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA2]
gi|328754956|gb|EGF68572.1| peptide chain release factor 2 [Propionibacterium acnes HL020PA1]
gi|328761406|gb|EGF74932.1| peptide chain release factor 2 [Propionibacterium acnes HL099PA1]
Length = 371
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 226 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 274
>gi|422438432|ref|ZP_16515276.1| peptide chain release factor 2 [Propionibacterium acnes HL092PA1]
gi|422493656|ref|ZP_16569956.1| peptide chain release factor 2 [Propionibacterium acnes HL086PA1]
gi|422516616|ref|ZP_16592725.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA2]
gi|422524027|ref|ZP_16600036.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA2]
gi|422531989|ref|ZP_16607935.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA1]
gi|422545058|ref|ZP_16620888.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA1]
gi|313792395|gb|EFS40490.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA1]
gi|313801469|gb|EFS42718.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA2]
gi|313838232|gb|EFS75946.1| peptide chain release factor 2 [Propionibacterium acnes HL086PA1]
gi|314963179|gb|EFT07279.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA1]
gi|315078242|gb|EFT50285.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA2]
gi|327453496|gb|EGF00151.1| peptide chain release factor 2 [Propionibacterium acnes HL092PA1]
Length = 371
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 226 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 274
>gi|222056175|ref|YP_002538537.1| hypothetical protein Geob_3093 [Geobacter daltonii FRC-32]
gi|221565464|gb|ACM21436.1| hypothetical protein Geob_3093 [Geobacter daltonii FRC-32]
Length = 370
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + +VL + K + + L + E+ +++ +L EA D + +
Sbjct: 44 FWDDNEAAQKVLKERTVMEKTLASWDRLNRQVEDIRVLIELGS-EAEDEATLAEVHDLND 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K L E K+L GP+D +I +G+ G + WAE LL MY+R+ +++G++
Sbjct: 103 QLEKGLVDAEFQKMLSGPHDASSCFFSINSGAGGTESQDWAEMLLRMYLRYCERKGWKTE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D GVK T EYA+GYL E G H L+ F + + H + A V V
Sbjct: 163 ITDYQSGDEAGVKGVTFSVSGEYAYGYLKAEVGIHRLVRISPFDSNARRH-TSFASVFVF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E D++I + DL F S G+ + A I HIPTGI V
Sbjct: 222 PE-IEDDIDVKIVETDLRVDTFRSSGAGGQHVNTTDSAIRITHIPTGIVV 270
>gi|441523265|ref|ZP_21004893.1| peptide chain release factor 2 [Gordonia sihwensis NBRC 108236]
gi|441457115|dbj|GAC62854.1| peptide chain release factor 2 [Gordonia sihwensis NBRC 108236]
Length = 370
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL--FKRAYR 63
+LW+D + V +L+ + + + +LR + ++ ++ +LAE E D + + A
Sbjct: 43 DLWNDQEHAQSVTSELSHAQSELRRVSELRSRLDDLPVLYELAEAEEGDSAVAALEDAET 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
D+ + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++ G+
Sbjct: 103 ERADLRRDIEAMEVKTMLAGEYDPREALVNIRSGAGGVDAADWAQMLMRMYIRWAEQHGH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + Y +G LS E G H L+ + + + A V+
Sbjct: 163 PVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 223 VLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 273
>gi|379714854|ref|YP_005303191.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 316]
gi|377653560|gb|AFB71909.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 316]
Length = 366
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDIPDSEVRMDVYRSSRPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|422390308|ref|ZP_16470403.1| peptide chain release factor 2 [Propionibacterium acnes HL103PA1]
gi|422459156|ref|ZP_16535804.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA2]
gi|422465250|ref|ZP_16541857.1| peptide chain release factor 2 [Propionibacterium acnes HL060PA1]
gi|422564398|ref|ZP_16640049.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA2]
gi|422575575|ref|ZP_16651113.1| peptide chain release factor 2 [Propionibacterium acnes HL001PA1]
gi|314923649|gb|EFS87480.1| peptide chain release factor 2 [Propionibacterium acnes HL001PA1]
gi|314967087|gb|EFT11186.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA2]
gi|315092708|gb|EFT64684.1| peptide chain release factor 2 [Propionibacterium acnes HL060PA1]
gi|315103819|gb|EFT75795.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA2]
gi|327327221|gb|EGE68997.1| peptide chain release factor 2 [Propionibacterium acnes HL103PA1]
Length = 371
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 106 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 226 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 274
>gi|33860740|ref|NP_892301.1| peptide chain release factor 2 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633682|emb|CAE18639.1| peptide chain release factor RF-2 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 373
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D E A V+I AG+ G + W E LL MY RW D G + D
Sbjct: 110 LDKWEFQRLLCGEYDKEAAIVSINAGAGGTDAQDWVEILLRMYSRWVDNNGMSLEITDLS 169
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 170 DGEEAGIKSVTFEVNGKYAYGYLQNEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDQ 228
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
S L I D+DL + S G+ + + A I H+P+GIAVR T
Sbjct: 229 SISLDIPDKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGIAVRCT 275
>gi|386739917|ref|YP_006213097.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 31]
gi|384476611|gb|AFH90407.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 31]
Length = 366
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|379795225|ref|YP_005325223.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872215|emb|CCE58554.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 369
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ ++ + +L + E D +
Sbjct: 39 MMSEPNFWDNQTKAQDIIDKNNALKSIVNGYKKLQQDVDDMEATWELLQ-EEFDEEMKVD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +D +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQDVIDFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>gi|422396770|ref|ZP_16476801.1| peptide chain release factor 2 [Propionibacterium acnes HL097PA1]
gi|327329965|gb|EGE71719.1| peptide chain release factor 2 [Propionibacterium acnes HL097PA1]
Length = 370
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+K+AT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKAATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 225 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 273
>gi|402304420|ref|ZP_10823490.1| peptide chain release factor 2 [Haemophilus sputorum HK 2154]
gi|400378008|gb|EJP30873.1| peptide chain release factor 2 [Haemophilus sputorum HK 2154]
Length = 329
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 15/234 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+ P K+ + + A VVN +KDL E+ + + +LA +EA D F+ A +
Sbjct: 10 IWNTPEKAQALGKERASLELVVNTIKDLDQGIEDVEGLIELA-VEAEDIDTFQEAQAEAD 68
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 69 QLEEKLAKLEFQRMFSGAHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTE 128
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ G+KSATI+ EYAFG+L ETG H L+ F + + H + A V
Sbjct: 129 LIEVSDGDVAGLKSATIKISGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFVY 187
Query: 184 PLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 188 PEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 237
>gi|387138177|ref|YP_005694156.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|389849923|ref|YP_006352158.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 258]
gi|349734655|gb|AEQ06133.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|388247229|gb|AFK16220.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis 258]
Length = 366
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDIPDSEVRMDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|315655086|ref|ZP_07907988.1| peptide chain release factor RF2 [Mobiluncus curtisii ATCC 51333]
gi|315490567|gb|EFU80190.1| peptide chain release factor RF2 [Mobiluncus curtisii ATCC 51333]
Length = 376
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDY--GLFKRAYR 63
+LWDD + +V L+ + + L+ +R + ++ + + +L EA + + A +
Sbjct: 45 DLWDDQEHAQKVTQSLSAAQVDMQRLQKMRARIDDMEALVELGAEEAGEDRDAILADAEQ 104
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ Y
Sbjct: 105 TYETLKQDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADFAQMLLRMYLRYCERHHY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T + + YA+G LS E G H L N + + + A V+
Sbjct: 165 ATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARVSPFNAAGKRQTSFAAVE 224
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +ET+ +++ + D+ +F S G+ + A + H+PTGI +
Sbjct: 225 VIPL-IETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVI 275
>gi|421858651|ref|ZP_16290915.1| protein chain release factor B [Paenibacillus popilliae ATCC 14706]
gi|410831824|dbj|GAC41352.1| protein chain release factor B [Paenibacillus popilliae ATCC 14706]
Length = 340
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 16/243 (6%)
Query: 1 MVRNY-------NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI 53
M+ NY + WDD ++ ++ +L +V L+ E+ +++ +LA+ E
Sbjct: 1 MIANYEEKMSAPDFWDDNERAQGMISELNAIKGIVEEYSSLQQDYEDTQMMLELADEEH- 59
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
D GL + + ++Q+E+ LL P D A + + G+ G + W + LL M
Sbjct: 60 DEGLAQELGEGVKQLYGRVEQFELQLLLSEPYDKMNAILELHPGAGGTESQDWGQMLLRM 119
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGS 170
Y RWA++ G++ V+D G+KS T+ + A+GYL E G H L+ F +
Sbjct: 120 YTRWAEQRGFKVEVLDYLPGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSG 179
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
H + ++C DVVP + D+++ +EDL + + G+ + A I HIPTG
Sbjct: 180 RRHTSFVSC-DVVPEITD-DVDIEVRNEDLKIDTYRASGAGGQHINTTDSAVRITHIPTG 237
Query: 228 IAV 230
I V
Sbjct: 238 IVV 240
>gi|376248040|ref|YP_005139984.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC04]
gi|372114608|gb|AEX80666.1| peptide chain release factor 2 [Corynebacterium diphtheriae HC04]
Length = 405
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A
Sbjct: 63 TLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAE 122
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 123 LAAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKV 180
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 181 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 240
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 241 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 289
>gi|419860362|ref|ZP_14383006.1| peptide chain release factor 2 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387983171|gb|EIK56662.1| peptide chain release factor 2 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 369
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 8/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A L
Sbjct: 44 LWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAEL 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K ++
Sbjct: 104 AAD--IEALEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNDHKVD 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+P
Sbjct: 162 IYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVLP 221
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 222 V-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>gi|392400126|ref|YP_006436726.1| peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis Cp162]
gi|390531204|gb|AFM06933.1| Peptide chain release factor 2 (RF-2) [Corynebacterium
pseudotuberculosis Cp162]
Length = 366
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTSEIESLEVKAMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|456385063|gb|EMF50641.1| prfB protein [Streptomyces bottropensis ATCC 25435]
Length = 368
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TSVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|387928642|ref|ZP_10131320.1| peptide chain release factor 2 [Bacillus methanolicus PB1]
gi|387588228|gb|EIJ80550.1| peptide chain release factor 2 [Bacillus methanolicus PB1]
Length = 327
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A+ LK +VN DL E L +L + E D L +
Sbjct: 5 DFWDDQQKA-QTIINEANGLKDLVNEFNDLNETLENLDLTYELVKEEN-DAELKEELENE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D +K ++Q+E+ LL P D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 63 LKDFTKRVNQFELQLLLNEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKKGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGDEAGIKSVTLAIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P F +++I EDL + S G+ + A I HIPTG+ V
Sbjct: 182 VMPEF-NDEIEIEIRPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVV 232
>gi|268316864|ref|YP_003290583.1| LigA protein [Rhodothermus marinus DSM 4252]
gi|262334398|gb|ACY48195.1| LigA [Rhodothermus marinus DSM 4252]
Length = 371
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 3/180 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P ++ EV ++A+ V A + LR +A++ + + +L + E D L + R
Sbjct: 40 FWDNPERAREVEKQIAEEESWVAAWEQLRRQADDVQTLLELQQEEP-DANLEEEIAREVA 98
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + LD+ E+ LL P+D A +TI G+ G + WAE LL MY RW ++ GY
Sbjct: 99 RLEQQLDELELRSLLTDPDDHRNAILTIHPGAGGTESQDWAEMLLRMYTRWGERHGYDVE 158
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+++ G+KSAT+ YA+GYL GE+G H L+ + S + A V V P
Sbjct: 159 LLEYQAGDVAGIKSATLRIAGPYAYGYLKGESGVHRLVRISPFDASGRRHTSFASVFVYP 218
>gi|152967725|ref|YP_001363509.1| peptide chain release factor 2 [Kineococcus radiotolerans SRS30216]
gi|226726318|sp|A6WEK6.1|RF2_KINRD RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|151362242|gb|ABS05245.1| peptide chain release factor 2 [Kineococcus radiotolerans SRS30216]
Length = 367
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V +L+ ++ ++ + + ++ +++ +L+E E D A
Sbjct: 43 SLWDDPEHAQTVTSRLSAVQAELDRIEKMGGRIDDLEVLVELSEDEH-DADSLAEAETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V + L Q E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ GY+
Sbjct: 102 NEVKEQLAQLEVRTLLSGEYDSREAIVTIRSEAGGVDAADFAEMLMRMYLRWAERRGYKS 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGIKSATFKVAAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET P+ ++ + S P G+ + A + H+PTGI V
Sbjct: 222 PVVAETDHVDVPENEVRVDVYRSSGPG--GQSVNTTDSAVRLTHLPTGIVV 270
>gi|72162878|ref|YP_290535.1| peptide chain release factor 2 [Thermobifida fusca YX]
gi|71916610|gb|AAZ56512.1| bacterial peptide chain release factor 2 (bRF-2) [Thermobifida
fusca YX]
Length = 375
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ V+ ++++R + ++ ++ +LA E D A R
Sbjct: 45 LWNDQANAQKVTRRLSFLESEVSKVENIRSRIDDLGVLFELAAAEN-DAETLAEARRELA 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + E+ LL GP D A ++I A + G+ W + L MY+RWA++ GY
Sbjct: 104 ALRKDISDLEVRTLLSGPYDEREALISINAQAGGVDAADWTQMLQRMYLRWAERHGYPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G L GE G H L+ F N S + + A VDVV
Sbjct: 164 IYETSYAEEAGIKSTTFVVKAPYAYGMLRGEHGTHRLVRISPFDNQS-RRQTSFAGVDVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E S ++I + +L ++ S G+ + A I H+PTGI V
Sbjct: 223 PV-VEQSDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|419421503|ref|ZP_13961731.1| peptide chain release factor 2 [Propionibacterium acnes PRP-38]
gi|379977994|gb|EIA11319.1| peptide chain release factor 2 [Propionibacterium acnes PRP-38]
Length = 367
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 102 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+K+AT +A+G LS E G H L+ + + + A V+V+
Sbjct: 162 EILDTSYAEEAGIKAATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 222 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 270
>gi|404257492|ref|ZP_10960817.1| peptide chain release factor 2 [Gordonia namibiensis NBRC 108229]
gi|403403887|dbj|GAB99226.1| peptide chain release factor 2 [Gordonia namibiensis NBRC 108229]
Length = 373
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 16/236 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + E+ + +LA+ E G K A A
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVHYELADAEE---GEDKTAALAD 101
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++
Sbjct: 102 ADEERASLRADIEAMEVKTMLAGEYDSREAVVNIRSGAGGVDAADWAQMLMRMYIRWAER 161
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+GY V D + G+KSAT + Y +G LS E G H L+ F N S + +
Sbjct: 162 KGYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSF 220
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 221 AEVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 275
>gi|335044433|ref|ZP_08537458.1| protein chain release factor B [Methylophaga aminisulfidivorans MP]
gi|333787679|gb|EGL53563.1| protein chain release factor B [Methylophaga aminisulfidivorans MP]
Length = 348
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P + ++ + A K+V L R ++AK + +LA +E D F A +A
Sbjct: 28 SVWENPETAQKLGQERASLEKIVTTLSGHRDMLDDAKELLELA-VEDNDQATFD-AIQAD 85
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L ++ K L++ E ++ G D A + I++GS G + WA +L MY+RW + + Y+
Sbjct: 86 LNELEKGLEKLEFQRMFSGKLDKNNAYLDIQSGSGGTEAQDWANMILRMYLRWGESQDYK 145
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ + G+KSAT+ FE EYAFG L ETG H L+ F +G+ H + A V
Sbjct: 146 VELMEVSAGEVAGIKSATVRFEGEYAFGMLRTETGVHRLVRKSPFDSGARRH-TSFASVF 204
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + ++ I+ DL + S G+ + A I H+PT V+
Sbjct: 205 VYPE-VDDTIEIDINPADLRTDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVQ 256
>gi|284029674|ref|YP_003379605.1| peptide chain release factor 2 [Kribbella flavida DSM 17836]
gi|283808967|gb|ADB30806.1| peptide chain release factor 2 [Kribbella flavida DSM 17836]
Length = 373
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V +L+ V + +LR + ++ ++ +L+ E D + +
Sbjct: 44 DLWDDQANAQKVTSRLSSLQADVERVTNLRSRIDDLGVMIELSREEN-DADSLAESEKEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K + E+ LL G D A VTI++G+ G+ +AE L MY+RWA++ GY
Sbjct: 103 AALAKSIQSLEVRTLLSGEYDEREALVTIRSGAGGVDAADFAEMLQRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KS T + YA+G LS E+G H L+ + + + A V+VV
Sbjct: 163 EVYDTSYAEEAGLKSTTFGVKAPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAAVEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ LE + ++ + +E+L ++ S G+ + A I H+PTG V
Sbjct: 223 PV-LEQTDEIDVPEEELRIDVYRSSGPGGQSVNTTDSAVRITHLPTGTVV 271
>gi|290959957|ref|YP_003491139.1| peptide chain release factor 2 [Streptomyces scabiei 87.22]
gi|260649483|emb|CBG72598.1| peptide chain release factor 2 [Streptomyces scabiei 87.22]
Length = 368
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 ASVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|312142853|ref|YP_003994299.1| peptide chain release factor 2 [Halanaerobium hydrogeniformans]
gi|311903504|gb|ADQ13945.1| peptide chain release factor 2 [Halanaerobium hydrogeniformans]
Length = 346
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 14/233 (6%)
Query: 7 LWDDPTKS---NEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD + ++ L KL LKV++ L++ K +E ++ QLA E + L + +
Sbjct: 25 FWDDKENARHKSQRLDKLKKRLKVISELEE---KFDEIEIYQQLAAEEGEN--LREELEQ 79
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + K LD E+ L P D A ++I G+ G + WAE LL MY RWA+ GY
Sbjct: 80 SFSQLEKKLDNLELKLRLNEPYDDHNAILSIHPGAGGTESQDWAEMLLRMYRRWAESSGY 139
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ ++ GVKS T+ +YAFGYL GE G H L+ + S + A VD
Sbjct: 140 QLETLEFSAGDEAGVKSVTLLISGDYAFGYLKGERGVHRLVRISPFDSSGRRHTSFASVD 199
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P L+ ++ I + DL + + G+ + A I H PTG+ V+
Sbjct: 200 VLPE-LDDELEVDIDENDLRIETYRASGAGGQHVNKTDSAVRITHQPTGVVVQ 251
>gi|315657060|ref|ZP_07909945.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492452|gb|EFU82058.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 376
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDY--GLFKRAYR 63
+LWDD + +V L+ + + L+ +R + ++ + + +L E+ + + A +
Sbjct: 45 DLWDDQEHAQKVTQSLSAAQADMQRLQKMRARIDDMEALVELGAEESGEDRDAILADAEQ 104
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ Y
Sbjct: 105 TYETLKQDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADFAQMLLRMYLRYCERHHY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T + + YA+G LS E G H L N + + + A V+
Sbjct: 165 ATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARVSPFNAAGKRQTSFAAVE 224
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +ET+ +++ + D+ +F S G+ + A + H+PTGI +
Sbjct: 225 VIPL-IETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVI 275
>gi|182438348|ref|YP_001826067.1| peptide chain release factor 2 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778999|ref|ZP_08238264.1| Peptide chain release factor 2 [Streptomyces griseus XylebKG-1]
gi|238688991|sp|B1VV08.1|RF2_STRGG RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|178466864|dbj|BAG21384.1| putative peptide chain release factor 2 [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326659332|gb|EGE44178.1| Peptide chain release factor 2 [Streptomyces griseus XylebKG-1]
Length = 368
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LA E A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLEVLFELAADEGDAD-AQAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVRKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|337290240|ref|YP_004629261.1| peptide chain release factor RF-2 [Corynebacterium ulcerans
BR-AD22]
gi|397653481|ref|YP_006494164.1| peptide chain release factor 2 [Corynebacterium ulcerans 0102]
gi|334698546|gb|AEG83342.1| peptide chain release factor RF-2 [Corynebacterium ulcerans
BR-AD22]
gi|393402437|dbj|BAM26929.1| peptide chain release factor 2 [Corynebacterium ulcerans 0102]
Length = 367
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTGLRQRIDDIPVMYELAEEEGDGTELADEELAA- 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 102 --LTAEIESLEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|304389757|ref|ZP_07371716.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326933|gb|EFL94172.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 376
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDY-GLFKRAYR 63
+LWDD + +V L+ + + L+ +R + ++ + + +L AE D + A +
Sbjct: 45 DLWDDQEHAQKVTQSLSAAQADLQRLQKMRARIDDMEALVELGAEESGEDRDAILADAEQ 104
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ Y
Sbjct: 105 TYETLKQDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADFAQMLLRMYLRYCERHHY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T + + YA+G LS E G H L N + + + A V+
Sbjct: 165 ATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARVSPFNAAGKRQTSFAAVE 224
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +ET+ +++ + D+ +F S G+ + A + H+PTGI +
Sbjct: 225 VIPL-IETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVI 275
>gi|253701853|ref|YP_003023042.1| hypothetical protein GM21_3258 [Geobacter sp. M21]
gi|251776703|gb|ACT19284.1| conserved hypothetical protein [Geobacter sp. M21]
Length = 371
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 8/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK-RAYRA 64
+ W+D + +VL K V + L +A + + + +L E + L + A A
Sbjct: 43 DFWNDAENAQKVLRSRTAMEKDVTIWESLDKQARDIQELIELGSEEQDEATLAEVAAMNA 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + Q E ++L GP+D GA V+I +G+ G + WAE LL MY+R+ +K+G++
Sbjct: 103 QLETG--VSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDWAEMLLRMYLRYCEKKGWK 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D GVK T E+A+GYL E G H L+ + S + A V
Sbjct: 161 TEITDYQEGDGAGVKGVTFAVTGEFAYGYLKAEAGIHRLVRISPFDSSARRHTSFASAFV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E +++I++ DL + S G+ + A I HIPTG V
Sbjct: 221 FPVIEEDDIEIKIAESDLRIDTYRSSGAGGQHVNTTDSAIRITHIPTGTVV 271
>gi|413948643|gb|AFW81292.1| hypothetical protein ZEAMMB73_079544 [Zea mays]
Length = 377
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 100 GICPEI--WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157
G+C + WA+ LL MYVRW +K+ Y+ RVV+K + G+KSAT+E E YA+GYLSGE
Sbjct: 111 GLCSYLADWADMLLRMYVRWGEKQRYKTRVVEKSPGEQAGIKSATVELEGRYAYGYLSGE 170
Query: 158 TGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSI 214
G H ++ N + + A V+V+PL E S + I +EDL S G+ Q++
Sbjct: 171 KGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNV 230
Query: 215 AKPAACIQ--HIPTGIAVR 231
K ++ HIPTGIAVR
Sbjct: 231 NKVETAVRMVHIPTGIAVR 249
>gi|406983802|gb|EKE04960.1| peptide chain release factor 2 [uncultured bacterium]
Length = 350
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 23/235 (9%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD K+ VL L+ ++ +KD+ ++ +++ ++ ++E ++
Sbjct: 43 LWDDQNKAKAVLQNLSGLKAELDEIKDV---SDTLEILNEVEDVEELN------------ 87
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +L+ + E+ L +D + +TI AG G WA+ L MY+R+ +++G+
Sbjct: 88 KLGRLIAKLELKSYLSATHDSKNTIITIHAGQGGTEAMDWAQMLFRMYIRYCERKGFATE 147
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+K+ T E + YA+GYL GE G H L+ N + + + A V+V+P
Sbjct: 148 TIDSTSGEEAGLKTVTFEIKGRYAYGYLKGEAGTHRLVRQSPFNANDLRQTSFALVEVLP 207
Query: 185 LFLETS--PDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGTT 234
LE S PD+QI DE+L + G Q++ K + ++ H+PTGI + T
Sbjct: 208 -DLEASDLPDIQIKDEELDWQFTRAGGHGGQNVNKVSTAVRLTHLPTGIVITART 261
>gi|359426085|ref|ZP_09217172.1| peptide chain release factor 2 [Gordonia amarae NBRC 15530]
gi|358238562|dbj|GAB06754.1| peptide chain release factor 2 [Gordonia amarae NBRC 15530]
Length = 371
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 16/235 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW++ + +V +L+ + + +LR + E+ ++ +LAE E G + A A
Sbjct: 44 LWNNQDHAQKVTSELSHAQAEFRKVSELRQRLEDMPVLYELAESEE---GEDRTAALADA 100
Query: 67 DVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
D + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+K
Sbjct: 101 DEERAALRTDIEAMEVKTMLAGEYDARDALVNIRSGAGGVDAADWAQMLMRMYIRWAEKH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 HYGVEVYDTSYAEEAGIKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I++ DL ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIDIAETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|302551795|ref|ZP_07304137.1| peptide chain release factor 2 [Streptomyces viridochromogenes DSM
40736]
gi|302469413|gb|EFL32506.1| peptide chain release factor 2 [Streptomyces viridochromogenes DSM
40736]
Length = 368
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|289549137|ref|YP_003474125.1| peptide chain release factor 2 [Thermocrinis albus DSM 14484]
gi|289182754|gb|ADC89998.1| peptide chain release factor 2 [Thermocrinis albus DSM 14484]
Length = 372
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 28/240 (11%)
Query: 6 NLWDDPTKSNEVLVK----------LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
++W+ K+ ++L + L + KV++ +++L + EE L Q E ++
Sbjct: 43 HIWNQQEKAKKILQRRKWLEENIQQLEATEKVLSDIRELLHITEEEDLETQTLLKEELE- 101
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+++ E+ L G D + A +TI+AG+ G+ WA+ LL MY
Sbjct: 102 -----------KAEQMIKDMEIRAFLSGEMDAKNAYLTIQAGAGGVEACDWAQMLLRMYR 150
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA+K GY VVD G+KSAT+ + YA+GYL GE+G H L+ + +
Sbjct: 151 RWAEKHGYEVEVVDITPDDVAGIKSATLLIKGPYAYGYLKGESGVHRLVRISPFDANARR 210
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V VVP ++ S +++I +ED+ F + G+ + A I+H PTGI V
Sbjct: 211 HTSFASVTVVPQ-IDESINIEIREEDIEMETFRASGAGGQYVNKTDTAVRIRHKPTGIVV 269
>gi|449485390|ref|XP_004157153.1| PREDICTED: peptide chain release factor 2-like, partial [Cucumis
sativus]
Length = 237
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 5/133 (3%)
Query: 106 WAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN 165
WA+ LL MYVRW +K+ Y+ RVV+K + G+KSATIE E YA+GY+SGE G H ++
Sbjct: 6 WADMLLRMYVRWGEKQRYKTRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVR 65
Query: 166 FP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAAC 220
N + + + V+V+PL + S ++++ +EDL S G+ Q++ K A
Sbjct: 66 QSPFNSKGLRQTSFSGVEVMPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVR 125
Query: 221 IQHIPTGIAVRGT 233
I HIPTG+ VR T
Sbjct: 126 ITHIPTGVTVRCT 138
>gi|257054828|ref|YP_003132660.1| peptide chain release factor 2 [Saccharomonospora viridis DSM
43017]
gi|256584700|gb|ACU95833.1| bacterial peptide chain release factor 2 (bRF-2) [Saccharomonospora
viridis DSM 43017]
Length = 368
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDPEVAQRVTSQLSHKQASLRKVSELRQRVDDLGVLHELAEAEG-DKASLAEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K ++ E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AQLTKDVNALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G++SAT + Y +G LS E G H L+ + + + A V+V+
Sbjct: 162 EIYDISYAEEAGIRSATFKISGPYLYGTLSVEQGTHRLVRISPFDNQNRRQTSFAHVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E ++I ++D+ ++ S G+ + A I H+PTGI V
Sbjct: 222 P-EVEEIDHVEIPEKDIRVDVYRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>gi|15606882|ref|NP_214263.1| peptide chain release factor 2 [Aquifex aeolicus VF5]
gi|6225943|sp|O67695.1|RF2_AQUAE RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|2984119|gb|AAC07656.1| peptide chain release factor RF-2 [Aquifex aeolicus VF5]
Length = 373
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 10/231 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEE-AKLIAQLAEMEAIDYGLFKRAYRA 64
N W+D K+ +V+ + + +N LK+L ++ +L+ +E + + + +
Sbjct: 44 NFWEDQEKAKQVIQRRKWVEETLNKLKNLEKSVKDLEELVEITSEEDTETWAMMDEEIK- 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+V + L + E+ L G D + A +TI+AG+ G WA+ L MY RWA+K+GY
Sbjct: 103 --EVERTLRELELKTYLSGEMDAKNAYLTIQAGAGGTEACDWADMLFRMYKRWAEKKGYE 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
++D G+KS T+ + YA+GYL GE G H L+ + + + A V V
Sbjct: 161 VELIDITPDDVAGIKSVTVLVKGPYAYGYLKGEQGVHRLVRISPFDANARRHTSFAAVSV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P ++ ++I EDL F + G+ + A I HIPTGI V
Sbjct: 221 MPQ-IDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRITHIPTGITV 270
>gi|373457567|ref|ZP_09549334.1| Peptide chain release factor 2 [Caldithrix abyssi DSM 13497]
gi|371719231|gb|EHO41002.1| Peptide chain release factor 2 [Caldithrix abyssi DSM 13497]
Length = 367
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 13/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAK-LIAQLAE--MEAIDYGLFKRAYR 63
W+D K+ +VL ++ + V+A + + EEAK LI LAE EA+ L +
Sbjct: 44 FWNDQEKAQKVLKQINRHKEWVDAWQSVNNLLEEAKILIEMLAEDESEALKDELVSHFKK 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++ L E ++L G +D + A +TI G+ G + WA L+ MY+R+A+++G+
Sbjct: 104 MEKEINAL----EFKRMLSGRDDPKNAILTIHPGAGGTESQDWASMLMRMYLRFAERQGF 159
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
++D + G+KS TIE + YA+GYL E G H L+ + + + A V
Sbjct: 160 ETEIMDYQPGEEAGIKSVTIEVKGNYAYGYLKAENGVHRLVRISPFDANKRRHTSFASVF 219
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P ++ + D++I+ DL + + G+ + A I H+PTGI V+
Sbjct: 220 VIPE-IDENIDVEINPSDLRIDTYRASGAGGQHVNKTDSAIRITHLPTGIVVQ 271
>gi|440783102|ref|ZP_20960913.1| peptide chain release factor 2 [Clostridium pasteurianum DSM 525]
gi|440219677|gb|ELP58888.1| peptide chain release factor 2 [Clostridium pasteurianum DSM 525]
Length = 327
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 13/233 (5%)
Query: 7 LWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WD+ K+ E+ K L D +++VN+L + + E+ + + ++++ E D +
Sbjct: 6 FWDNMKKAQEITQKSKMLKDRVELVNSLDE---RLEDTRSLIEMSKEEE-DEDILNEIVS 61
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++ ++ + + LL G D A + + G+ G + W E LL MY RWA+ + +
Sbjct: 62 EINELTVRIENFRIELLLSGEYDRNNAILDLHTGAGGTDAQDWTEMLLRMYTRWAESKNF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ +D GVKSA ++ E+A+GYL E G H L+ N + + + A V+
Sbjct: 122 KVETIDLLPGDEAGVKSAALKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVE 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P E + D+ I EDL + + G+ + + A I HIPTGI V+
Sbjct: 182 VIPELTE-NQDINIKAEDLRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQ 233
>gi|348029692|ref|YP_004872378.1| protein chain release factor B, RF-2 [Glaciecola nitratireducens
FR1064]
gi|347947035|gb|AEP30385.1| protein chain release factor B, RF-2 [Glaciecola nitratireducens
FR1064]
Length = 351
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 13/238 (5%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+ N ++W++P ++ + + +VV ++ L E+ + + +LA +EA D A
Sbjct: 27 LENPDIWNNPEQAQALGKEKVALEEVVLTIQKLTQGTEDVEGLLELA-VEAEDEDTLNDA 85
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
D++ L++ E ++ GPND + I++GS G + WA LL MY+RW +
Sbjct: 86 EAELKDLTLALEKLEFRRMFSGPNDANDGYLDIQSGSGGTEAQDWANMLLRMYLRWGEAH 145
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
G++ +++ G+KSATI F EYAFG+L ETG H L+ F +GS H + A
Sbjct: 146 GFKTELIELSDGDVAGIKSATIRFGGEYAFGWLRTETGVHRLVRKSPFDSGSRRH-TSFA 204
Query: 179 CVDVVPLFLETSPD--LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E S D ++I+ DL + + G+ + A I H+PT I V+
Sbjct: 205 SAFAYP---EVSDDIEIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHLPTNIVVQ 259
>gi|387126791|ref|YP_006295396.1| peptide chain release factor 2 [Methylophaga sp. JAM1]
gi|386273853|gb|AFI83751.1| Peptide chain release factor 2 [Methylophaga sp. JAM1]
Length = 351
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N+W++P + ++ + + ++V L ++AK + +LA +E D F A A
Sbjct: 31 NVWNEPENAQKLGQERSSLERIVKTLSSHSEVLDDAKDLLELA-VEENDEDTFN-AVNAD 88
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + K L++ E ++ G D A + I++GS G + WA +L MY+RW + +GY+
Sbjct: 89 LDALEKGLEKLEFQRMFSGKLDANSAYLDIQSGSGGTEAQDWANIILRMYLRWGEAQGYK 148
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ + G+KSAT+ FE EYAFG L ETG H L+ F +G+ H + A V
Sbjct: 149 VTLMEVSEGEVAGIKSATVRFEGEYAFGMLRTETGVHRLVRKSPFDSGARRH-TSFASVF 207
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + ++ I+ DL + S G+ + A I H+PT V+
Sbjct: 208 VYPE-VDDTIEIDINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVQ 259
>gi|294629650|ref|ZP_06708210.1| peptide chain release factor 2 [Streptomyces sp. e14]
gi|292832983|gb|EFF91332.1| peptide chain release factor 2 [Streptomyces sp. e14]
Length = 371
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|170755895|ref|YP_001779801.1| peptide chain release factor 2 [Clostridium botulinum B1 str. Okra]
gi|429243946|ref|ZP_19207428.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001628]
gi|169121107|gb|ACA44943.1| peptide chain release factor 2 [Clostridium botulinum B1 str. Okra]
gi|428758866|gb|EKX81257.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001628]
Length = 325
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 119/239 (49%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLIKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + +D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEEIDKFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++++P E +++I EDL + + G+ + + A I HIPTGI V+
Sbjct: 175 SFASIEILPELTE-DQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQ 232
>gi|149374726|ref|ZP_01892500.1| peptide chain release factor 2 [Marinobacter algicola DG893]
gi|149361429|gb|EDM49879.1| peptide chain release factor 2 [Marinobacter algicola DG893]
Length = 351
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP ++ + + +D +V + +L E+A+ + ++A+ E D G
Sbjct: 31 SVWEDPERAQALGKERSDLELIVRTIDNLTSGLEDAEGLLEIADEEE-DEGTAAEIEADL 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L++ E ++ G D A + I+AGS G + W LL MY+RWA++ G++
Sbjct: 90 AGLDKELEKLEFRRMFSGEMDANNAYLDIQAGSGGTEAQDWGNMLLRMYLRWAERRGFKA 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+V+ G+KSATI + +YAFG+L ETG H L+ F +G+ H + + V V
Sbjct: 150 EIVELQEGDVAGIKSATIHIQGDYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFSSVFV 208
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ S +++I+ DL ++ + G+ + + A + H PTGI V
Sbjct: 209 SPE-VDDSFEIEINPADLRVDVYRASGAGGQHVNRTESAVRLTHNPTGIVV 258
>gi|225572941|ref|ZP_03781696.1| hypothetical protein RUMHYD_01132 [Blautia hydrogenotrophica DSM
10507]
gi|225039699|gb|EEG49945.1| peptide chain release factor 2 [Blautia hydrogenotrophica DSM
10507]
Length = 348
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD +S + + +L + ++LR + E+ + + ++ E D L
Sbjct: 19 DFWDDAEESQKKMKELKYMKDDLQTYENLRTQMEDMETLIEMG-YEENDPDLIPEIQEML 77
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K D + LL G D A VT+ AG+ G WA L MY RWADK+G+
Sbjct: 78 DEFQKSFDDIRVKTLLSGEYDSNDAIVTLHAGAGGTESCDWASMLYRMYTRWADKKGFSL 137
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T E E A+GYL E G H L+ N + + + DV+
Sbjct: 138 EVLDYLDGDEAGIKSVTFEVRGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 197
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D++I D+D+ + S G+ + A I H+PTGI V+
Sbjct: 198 P-DIEEDVDVEIRDDDIRVDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQ 247
>gi|297194069|ref|ZP_06911467.1| peptide chain release factor 2 [Streptomyces pristinaespiralis ATCC
25486]
gi|297152097|gb|EDY64812.2| peptide chain release factor 2 [Streptomyces pristinaespiralis ATCC
25486]
Length = 340
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LAE E D A
Sbjct: 16 SLWDDPEAAQKITSKLSHLQAEVRKTEALRGRIDDLEILFELAEAED-DPDARAEAEAEL 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ Y
Sbjct: 75 ESVRKALDEMEVRTLLSGEYDEREALVNIRAEAGGVDAADFAEQLQRMYLRWAERHNYGT 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 135 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 194
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ + G+ + A + HIPTGI V
Sbjct: 195 PV-VEKTDHIEIDESELRVDVYRASGPGGQGVNTTDSAVRLTHIPTGIVV 243
>gi|298346504|ref|YP_003719191.1| peptide subunit release factor RF2 [Mobiluncus curtisii ATCC 43063]
gi|298236565|gb|ADI67697.1| peptide chain release factor RF2 [Mobiluncus curtisii ATCC 43063]
Length = 376
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL-AEMEAIDY-GLFKRAYR 63
+LWDD + +V L+ + + L+ +R + ++ + + +L AE D + A +
Sbjct: 45 DLWDDQEHAQKVTQSLSAAQADLQRLQKMRARIDDMEALVELGAEESGEDRDAILVDAEQ 104
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + LD E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ Y
Sbjct: 105 TYETLKRDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADFAQMLLRMYLRYCERHHY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T + + YA+G LS E G H L N + + + A V+
Sbjct: 165 ATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARVSPFNAAGKRQTSFAAVE 224
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +ET+ +++ + D+ +F S G+ + A + H+PTGI +
Sbjct: 225 VIPL-IETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLTHLPTGIVI 275
>gi|210620542|ref|ZP_03292090.1| hypothetical protein CLOHIR_00033 [Clostridium hiranonis DSM 13275]
gi|210155256|gb|EEA86262.1| hypothetical protein CLOHIR_00033 [Clostridium hiranonis DSM 13275]
Length = 349
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D +++VL + + V + L+ E+ +++ +L E + K +
Sbjct: 24 DFWEDNENAHKVLQENKKLCETVEKFEQLQKNLEDIEVLIELGLEEDDSEDIEKEVSDSI 83
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++D+ + LL G D A V+I AG+ G+ + WA+ LL MY+RWA+ Y+
Sbjct: 84 NQLKDVIDEMTIQTLLSGEYDKNNAIVSINAGTGGLDAQDWAQMLLRMYIRWAEGRDYKV 143
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLACVD 181
+++D G+K+A + + + A+GYL GE G H ++ P+G + A VD
Sbjct: 144 KLLDLISDPEAGIKTAVMLIQGDNAYGYLKGEKGVHRIVRISPFDPSG--KRHTSFASVD 201
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+P L+ + +++I+ DL + + G+ + A I H+PTGI V+
Sbjct: 202 VIP-ELDENIEVEINQSDLKIDTYRASGAGGQHVNTTDSAVRITHLPTGITVQ 253
>gi|384515159|ref|YP_005710251.1| peptide chain release factor RF-2 [Corynebacterium ulcerans 809]
gi|334696360|gb|AEG81157.1| peptide chain release factor RF-2 [Corynebacterium ulcerans 809]
Length = 367
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWD+P + +V +L+ + L LR + ++ ++ +LAE E L A
Sbjct: 43 TLWDNPDHAQKVTTELSSVQAQLKKLTGLRQRIDDIPVMYELAEEEGDGTEL---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ +L G D A + I++G+ G+ WAE L+ MYVRWA+K +
Sbjct: 100 AELTAEIESLEVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYVRWAEKNDRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|329936498|ref|ZP_08286234.1| peptide chain release factor 2 [Streptomyces griseoaurantiacus
M045]
gi|329304013|gb|EGG47895.1| peptide chain release factor 2 [Streptomyces griseoaurantiacus
M045]
Length = 368
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRLVRISPYDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|315445399|ref|YP_004078278.1| peptide chain release factor 2 (bRF-2) [Mycobacterium gilvum Spyr1]
gi|315263702|gb|ADU00444.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
gilvum Spyr1]
Length = 372
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD ++ +V L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 44 LWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYELAAEEE-GAGSSEAFAEADA 102
Query: 67 DVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++KL + E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELAKLREDIAGMEVRTLLSGEYDEREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT YA+G LS E G H L+ F N S + + A V
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQS-RRQTSFADV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|145225030|ref|YP_001135708.1| peptide chain release factor 2 [Mycobacterium gilvum PYR-GCK]
gi|189040001|sp|A4TDE5.1|RF2_MYCGI RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|145217516|gb|ABP46920.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
gilvum PYR-GCK]
Length = 372
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD ++ +V L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 44 LWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYELAAEEE-GAGSSEAFAEADA 102
Query: 67 DVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++KL + E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELAKLREDIAGMEVRTLLSGEYDEREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT YA+G LS E G H L+ F N S + + A V
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQS-RRQTSFADV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|383767967|ref|YP_005446950.1| peptide chain release factor 2 [Phycisphaera mikurensis NBRC
102666]
gi|381388237|dbj|BAM05053.1| peptide chain release factor 2 [Phycisphaera mikurensis NBRC
102666]
Length = 364
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 12/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDDP ++N +L ++ V+ K K E+A L+ ++A EA D K
Sbjct: 43 TFWDDPDQANRMLAEMKAVKVVLEPWKAAAAKVEDAVLLWEMA-GEAGDQE-SKEEVDQQ 100
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD + LD+ E++ LL G +D + A +TI++G+ G + WAE L+ MY+ + +K+G+
Sbjct: 101 LDAIEADLDKLEITSLLSGKHDAKAAYLTIQSGAGGTEADDWAEMLMRMYMYYFEKQGFD 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V GVK T+ +A+GYLS E G H L N + + A VDV
Sbjct: 161 ASEVSLTHGTEAGVKEVTLHVTGPFAYGYLSAERGTHRLARVSPYNAEGKRQTSFATVDV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQ--HIPTGIAV 230
VP F E L+I + +L F+ S PG Q++ K A+ ++ H PT I V
Sbjct: 221 VPEF-EDDGKLEIDENELEVTAFARSSGPG-GQNVNKVASAVRIVHKPTQIMV 271
>gi|441516620|ref|ZP_20998368.1| peptide chain release factor 2 [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441456673|dbj|GAC56329.1| peptide chain release factor 2 [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 372
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA----Y 62
LW+D + +V +L+ + + + +LR + ++ ++ +L EME + + +A
Sbjct: 44 LWNDQDHAQQVTSRLSHAQSEMRRVTELRERLDDLPVLYELVEMEEGEAQVQAQADADAE 103
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RA L ++ E+ +L G D A V I++G+ GI WA+ L+ MY+RWA++ G
Sbjct: 104 RAGLRAD--VEAMEVKTMLAGEYDAREAVVNIRSGAGGIDAADWAQMLMRMYIRWAEQHG 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT + Y +G LS E G H L+ + + + A V
Sbjct: 162 YPVEVYDTSYAEEAGIKSATFVVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + I + ++ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-VETTDRIDIDENEVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|256824891|ref|YP_003148851.1| peptide chain release factor 2 [Kytococcus sedentarius DSM 20547]
gi|256688284|gb|ACV06086.1| bacterial peptide chain release factor 2 (bRF-2) [Kytococcus
sedentarius DSM 20547]
Length = 370
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP +V ++ V ++ + + ++ +++ ++ E D A +
Sbjct: 43 DLWDDPENGQKVSAAMSRVRGEVERIESMDSRIDDLEVLVEMGTEEG-DAETLAEATKEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +++ E+ LL G D A +TI+AG+ G+ +AE L+ MY+RWA++ Y
Sbjct: 102 AAIQAAVEKLEVRTLLSGEYDEREAVITIRAGAGGVDAADFAEMLMRMYLRWAERHEYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS T E YA+G L E G H L+ + + + A V+VV
Sbjct: 162 KVLDTSYAEEAGLKSVTFEVNVPYAYGNLVVEGGTHRLVRISPYDNQGRRQTSFAAVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + ++ +F S G+ + A + HIPTGI V
Sbjct: 222 PV-IEQTDSIEIPENEIKVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 270
>gi|345303210|ref|YP_004825112.1| peptide chain release factor 2 [Rhodothermus marinus SG0.5JP17-172]
gi|345112443|gb|AEN73275.1| Peptide chain release factor 2 [Rhodothermus marinus SG0.5JP17-172]
Length = 371
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 3/180 (1%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P ++ E+ ++A+ V A + LR +A++ + + +L + E D L + R
Sbjct: 40 FWDNPERAREIEKQIAEEEAWVAAWEQLRRQADDVQTLLELQQEEP-DANLEEEIAREVA 98
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + LD+ E+ LL P+D A +TI G+ G + WAE LL MY RW ++ GY
Sbjct: 99 RLEQQLDELELRSLLTDPDDHRNAILTIHPGAGGTESQDWAEMLLRMYTRWGERHGYDVE 158
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+++ G+KSAT+ YA+GYL GE+G H L+ + S + A V V P
Sbjct: 159 LLEYQAGDVAGIKSATLRIAGPYAYGYLKGESGVHRLVRISPFDASGRRHTSFASVFVYP 218
>gi|302560365|ref|ZP_07312707.1| peptide chain release factor 2 [Streptomyces griseoflavus Tu4000]
gi|302477983|gb|EFL41076.1| peptide chain release factor 2 [Streptomyces griseoflavus Tu4000]
Length = 368
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPEEAQKITSKLSHLQAEVRKAEGLRGRIDDLAVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TLVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 ELIETSYAEEAGIKSTTFSVQAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|228474266|ref|ZP_04059001.1| peptide chain release factor 2 [Staphylococcus hominis SK119]
gi|314936947|ref|ZP_07844294.1| peptide chain release factor 2 [Staphylococcus hominis subsp.
hominis C80]
gi|228271625|gb|EEK12972.1| peptide chain release factor 2 [Staphylococcus hominis SK119]
gi|313655566|gb|EFS19311.1| peptide chain release factor 2 [Staphylococcus hominis subsp.
hominis C80]
Length = 332
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K +VN +L +K E+ +L + E D + +
Sbjct: 1 MMTEPDFWDNQNKAQDVIDKNNALKSIVNGYYELNHKLEDMDATWELLQ-EEYDDEIKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEQDIVSFREQIDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ +D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 QGFKIETIDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPEFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|172041186|ref|YP_001800900.1| peptide chain release factor 2 [Corynebacterium urealyticum DSM
7109]
gi|171852490|emb|CAQ05466.1| peptide chain release factor RF-2 [Corynebacterium urealyticum DSM
7109]
Length = 377
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 15/237 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-------DYGLF 58
+LWDDP + +V +L+ + +++LR + E+ ++ +AE EA D
Sbjct: 43 SLWDDPDHAQQVTSELSRVQAKLKKIRELRQRLEDLPVLYNMAEEEAAEDPAASEDAVAM 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
R++L + ++ E++ +L G D A V I++G+ G+ WAE LL MY RWA
Sbjct: 103 AEEERSALRAA--IESLEITTMLSGEYDQREALVNIRSGAGGVDAADWAEMLLRMYTRWA 160
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ G++ + D + G+KSAT +Y +G LS E GAH L+ + + +
Sbjct: 161 EQHGHKVDIYDISYAEEAGIKSATFVIHGDYMYGTLSVEQGAHRLVRISPFDNQGRRQTS 220
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V+V+P+ +E + +++ D D+ ++ S G+ + A + HIPTGI V
Sbjct: 221 FAEVEVLPV-VEQTDSIEVPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 276
>gi|256821963|ref|YP_003145926.1| peptide chain release factor 2 [Kangiella koreensis DSM 16069]
gi|256795502|gb|ACV26158.1| bacterial peptide chain release factor 2 (bRF- 2) [Kangiella
koreensis DSM 16069]
Length = 365
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 9/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D ++ + + A VVN +KDL ++ + + +L+ +E D
Sbjct: 45 DVWNDQERAQSLGQERAKLETVVNTIKDLEAGIDDNQELLELS-VEEDDAESVAEIENEV 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L++ E ++ G D A + I+AGS G + WA LL MY+RW + G++
Sbjct: 104 KQLNTSLEKLEFRRMFSGEMDENNAYLDIQAGSGGTEAQDWASILLRMYLRWCESRGFKA 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V ++ G+KSATI E EYA+G+L ETG H L+ F +G+ H + A V V
Sbjct: 164 EVTEESDGDVAGIKSATIRVEGEYAYGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVFV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ S D++++ DL + + G+ + A + HIPTGI V+
Sbjct: 223 YP-EVDDSIDIEVNPADLRVDTYRASGAGGQHVNKTDSAIRLTHIPTGIVVQ 273
>gi|414161420|ref|ZP_11417680.1| peptide chain release factor 2 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876316|gb|EKS24227.1| peptide chain release factor 2 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 332
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ E++ K VV +DL + E+ +L + E D L ++
Sbjct: 6 FWDDQNKAQEIIDKNNALKSVVQGYRDLEAEIEDMNATHELLQ-EEYDEDLKADLEEETV 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD++E+ LL GP D A + + G+ G + WA LL MY R+A+ + ++
Sbjct: 65 NFKSKLDEFELQLLLNGPYDDNNAILELHPGAGGTESQDWASMLLRMYQRYAEDKNFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V D GVKS T+ + A+GYL E G H L+ F + H + ++C DV+
Sbjct: 125 VADYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F ++ I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PEFNNNEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|333896506|ref|YP_004470380.1| hypothetical protein Thexy_0660 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111771|gb|AEF16708.1| hypothetical protein Thexy_0660 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 365
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 11/236 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K E+ K D ++++ + L + E+ + +L +E D L + +
Sbjct: 43 DFWNDLEKFQELSKKQKDLKEIISEYEALEKQWEDLHTLIELG-LEEGDESLSQEVHEEY 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK ++ ++ LL GP D A ++I AG+ G + W E LL MY+RWA + Y
Sbjct: 102 KALSKKINDMKIKTLLSGPYDKNNAILSIHAGAGGTEAQDWTEMLLRMYMRWASSKNYDV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD + GVKS TI + +A+GYL E G H L+ + + + A V+V+
Sbjct: 162 ETVDYLPGDDAGVKSVTIMVKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVL 221
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E D++ I EDL + S G+ + + A I HIPTGI V+ T
Sbjct: 222 P---EIDDDIKVDIRPEDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGIIVQCQT 274
>gi|225027512|ref|ZP_03716704.1| hypothetical protein EUBHAL_01768 [Eubacterium hallii DSM 3353]
gi|224955151|gb|EEG36360.1| peptide chain release factor 2 [Eubacterium hallii DSM 3353]
Length = 371
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+R W+DP K+ EV K+ + V+A L ++ + +L E
Sbjct: 41 MREEGFWNDPDKAQEVTRKVKNLKDTVSAYHALELTLDDVSTMIELGNEEN--------- 91
Query: 62 YRASL--DVSKLLDQYEM-------SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
AS+ D+ +LL ++E+ LL G D A VT+ AG+ G WA L
Sbjct: 92 -DASVIPDIEELLGEFEIEFDNLKIQTLLSGEYDKNNAIVTLHAGAGGTESCDWAGMLYR 150
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY +WAD G++ V+D G+KS T E E A+GYL E G H L+ N +
Sbjct: 151 MYSKWADSHGFKTEVLDYLDGDEAGIKSITFEVNGENAYGYLKSERGVHRLVRISPFNAA 210
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+ + A DV+P +E ++I+DED+ + + G+ + A I HIPTG
Sbjct: 211 GKRQTSFASCDVMP-DIEEDLSVEIADEDIRIDTYRASGAGGQHINKTDSAIRITHIPTG 269
Query: 228 IAVR 231
+ V+
Sbjct: 270 VVVQ 273
>gi|363419407|ref|ZP_09307508.1| peptide chain release factor 2 [Rhodococcus pyridinivorans AK37]
gi|359737492|gb|EHK86424.1| peptide chain release factor 2 [Rhodococcus pyridinivorans AK37]
Length = 372
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 30/242 (12%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------------AQLAEMEAI 53
LW+D + +V +L+ + + ++ LR + E+ ++ A LA+ EA
Sbjct: 44 LWNDQDHAQKVTSELSHAQGELRRVEGLRQRLEDLPVLYELAEGEEGEARTAALADAEA- 102
Query: 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNM 113
+ + RA ++ E+ LL G D A V I+AG+ G+ WAE L+ M
Sbjct: 103 ----ERESLRADIEA------MEVRTLLSGEYDQRDALVNIRAGAGGVDAADWAEMLMRM 152
Query: 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSF 171
Y+RWADK GY V D + G+KSAT + Y +G LS E G H L+ +
Sbjct: 153 YIRWADKHGYGVEVYDTSYAEEAGIKSATFAVKAPYTYGTLSVEMGTHRLVRISPFDNQG 212
Query: 172 PHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+ + A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI
Sbjct: 213 RRQTSFAEVEVLPV-VETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGI 271
Query: 229 AV 230
V
Sbjct: 272 VV 273
>gi|182624026|ref|ZP_02951814.1| peptide chain release factor 2 [Clostridium perfringens D str.
JGS1721]
gi|177910919|gb|EDT73273.1| peptide chain release factor 2 [Clostridium perfringens D str.
JGS1721]
Length = 323
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 6 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+ Y
Sbjct: 64 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKEYSLE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 124 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 184 E-LTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 232
>gi|410729113|ref|ZP_11367197.1| peptide chain release factor 2 [Clostridium sp. Maddingley
MBC34-26]
gi|410596236|gb|EKQ50918.1| peptide chain release factor 2 [Clostridium sp. Maddingley
MBC34-26]
Length = 324
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ EV K ++ L+ + E+ +++ ++ ME D
Sbjct: 6 FWDDTKRAEEVTKKSKVIKSKIDNYDKLKLQVEDVEVLKEI--MEEDDEESANEIIDTIR 63
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++ Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 64 NIETQIEDYNMKVLLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSVE 123
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 124 TLDLLPGDEAGIKSVTLKVNGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFASMEVLP 183
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L D+ I +DL + S G+ + A I H+PTGI V+
Sbjct: 184 -ELTKEQDIDIKADDLKIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQ 232
>gi|163783151|ref|ZP_02178145.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881485|gb|EDP74995.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1]
Length = 367
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +V+ K + VN+++ L + + ++Q E D SL
Sbjct: 43 FWDDQEKAKKVIQKRKWLEETVNSIETLEKSLRDVEELSQTTPEEDTDTWAILEEEMESL 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L + E+ L G D + A +TI+AG+ G WA+ L MY RWA+++GY
Sbjct: 103 EDK--LKELELKTYLSGEMDSKNAYLTIQAGAGGTEACDWADMLYRMYRRWAERKGYDVE 160
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
VVD G+KS T+ + YA+GYL GE G H L+ F + + H + A V V+
Sbjct: 161 VVDITPDDVAGIKSVTLLVKGPYAYGYLRGEQGVHRLVRISPFDSNARRH-TSFAAVSVM 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ ++++ DEDL F + G+ + A + HIPTGI V
Sbjct: 220 PQ-IDEDINIEVRDEDLKIETFRASGAGGQYVNKTDTAVRLTHIPTGIVV 268
>gi|317497043|ref|ZP_07955371.1| peptide chain release factor 2 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895703|gb|EFV17857.1| peptide chain release factor 2 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 333
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ +S V+ ++ VV DL+ K E+ + + +AE E D L + A
Sbjct: 6 FWDNVEESQNVMKEVKSLKGVVEEYDDLKTKYEDIETLIDMAE-EDEDADLIEEATALMD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K ++ +S LL G D + A +T+ AG+ G WA L M+ RWA K+GY
Sbjct: 65 EFEKTYEELRISTLLTGEYDKDDAILTLHAGAGGTESCDWAGMLYRMFTRWAGKKGYGTE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS T++ A+GYL E G H L+ N + + + A DV+P
Sbjct: 125 VLDYLDGDEAGIKSVTVKITGMNAYGYLRSEKGVHRLVRISPFNAAGKRQTSFASCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ +++I+DED+ + + G+ + A I H+PTGI V+
Sbjct: 185 -DIKDDIEVEIADEDIRIDTYRASGAGGQHINKTDSAIRITHLPTGIVVQ 233
>gi|448824121|ref|YP_007417290.1| peptide chain release factor RF-2 [Corynebacterium urealyticum DSM
7111]
gi|448277618|gb|AGE37042.1| peptide chain release factor RF-2 [Corynebacterium urealyticum DSM
7111]
Length = 378
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 15/237 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-------DYGLF 58
+LWDDP + +V +L+ + +++LR + E+ ++ +AE EA D
Sbjct: 43 SLWDDPDHAQQVTSELSRVQAKLKKIRELRQRLEDLPVLYNMAEEEAAEDPAASEDAVAM 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
R++L + ++ E++ +L G D A V I++G+ G+ WAE LL MY RWA
Sbjct: 103 AEEERSALRAA--IESLEITTMLSGEYDQREALVNIRSGAGGVDAADWAEMLLRMYTRWA 160
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ G++ + D + G+KSAT +Y +G LS E GAH L+ + + +
Sbjct: 161 EQHGHKVDIYDISYAEEAGIKSATFVIHGDYMYGTLSVEQGAHRLVRISPFDNQGRRQTS 220
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V+V+P+ +E + +++ D D+ ++ S G+ + A + HIPTGI V
Sbjct: 221 FAEVEVLPV-VEQTDSIEVPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 276
>gi|418329734|ref|ZP_12940787.1| peptide chain release factor 2 [Staphylococcus epidermidis
14.1.R1.SE]
gi|418614095|ref|ZP_13177082.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU118]
gi|418632618|ref|ZP_13195048.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU128]
gi|418633748|ref|ZP_13196154.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU129]
gi|420176685|ref|ZP_14683092.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM057]
gi|420180368|ref|ZP_14686603.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM053]
gi|420189997|ref|ZP_14695945.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM037]
gi|420193118|ref|ZP_14698973.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM023]
gi|420203758|ref|ZP_14709319.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM015]
gi|365229857|gb|EHM70985.1| peptide chain release factor 2 [Staphylococcus epidermidis
14.1.R1.SE]
gi|374821668|gb|EHR85720.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU118]
gi|374832188|gb|EHR95908.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU128]
gi|374838695|gb|EHS02233.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU129]
gi|394250813|gb|EJD95974.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM053]
gi|394252251|gb|EJD97289.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM057]
gi|394259290|gb|EJE04148.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM037]
gi|394260241|gb|EJE05056.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM023]
gi|394274340|gb|EJE18761.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM015]
Length = 333
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D + K
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKKE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|406986791|gb|EKE07300.1| hypothetical protein ACD_18C00125G0004 [uncultured bacterium]
Length = 366
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 10/199 (5%)
Query: 40 EAKLIAQLAEMEAIDYGLFKRA--YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAG 97
E K + ++A+M+ D + R + + + K + + E L G +D E A V I +G
Sbjct: 75 ETKDLLEIAQMDEADKDVNMREDIEKQYVVLEKNILKLEFKTLFDGKHDKESAIVAIHSG 134
Query: 98 SNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157
S G + WAE LL MY+R+AD++G++ ++D+ + G KS T + E +A+G+L E
Sbjct: 135 SGGTEAQDWAEMLLRMYLRYADQKGWKTTILDETKGQEAGFKSVTFQVEGNFAYGHLKSE 194
Query: 158 TGAHCLIN---FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGER 211
G H L+ F H + A V+V+P LE S D++I D+D+ F + G+
Sbjct: 195 HGTHRLVRISPFDAEKMRH-TSFALVEVIPE-LEESEDVKIDDKDIRIDTFMAGGNGGQS 252
Query: 212 QSIAKPAACIQHIPTGIAV 230
+ A + HIPTGI V
Sbjct: 253 VNTTYSAVRLVHIPTGITV 271
>gi|359772386|ref|ZP_09275815.1| peptide chain release factor 2 [Gordonia effusa NBRC 100432]
gi|359310486|dbj|GAB18593.1| peptide chain release factor 2 [Gordonia effusa NBRC 100432]
Length = 371
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 119/234 (50%), Gaps = 12/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK----RA 61
+LW+D + +V +L+ + + + +LR + ++ + +LA+ E D A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLDDLPVHYELADAEEGDDRTAAIADADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RASL ++ E+ +L G D A V I++G+ GI WA+ L+ MY+RWA++
Sbjct: 103 ERASLRAD--IEAMEVKTMLAGEYDPRDALVNIRSGAGGIDAADWAQMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 161 GYGVEVYDTSYAEEAGIKSATFTVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ ++T+ + I++ DL ++ S G+ + A + HIPTGI V
Sbjct: 221 VEVLPV-VDTTDHIDINENDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|356571075|ref|XP_003553706.1| PREDICTED: peptide chain release factor 2-like [Glycine max]
Length = 466
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 14/232 (6%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDP ++ ++ + L +K VNA + + E +I +LA E D L +
Sbjct: 138 DLWDDPVRAGKISREHGSLLGKMKEVNAFE--QELLEHIDMI-KLAREEN-DADLESESL 193
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+A L++ + + E+ LL G D + ++AG+ G WA ++ MY WA + G
Sbjct: 194 KALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQQRG 253
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y+ VVD+ + G+K ATI+ + E+AFGY E G H L+ F + H + A
Sbjct: 254 YKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRH-TSFAA 312
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
V V+P+ + S +QI++ DL F + G+ + + A I HIPTG+
Sbjct: 313 VAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGV 364
>gi|441507575|ref|ZP_20989501.1| peptide chain release factor 2 [Gordonia aichiensis NBRC 108223]
gi|441448651|dbj|GAC47462.1| peptide chain release factor 2 [Gordonia aichiensis NBRC 108223]
Length = 371
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + ++ + +LAE E G + A A
Sbjct: 43 DLWNDQEHAQKVTSELSHAQSELRRVTELRQRLDDMPVHYELAEAEE---GEDRSAALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + + E+ +L G D A V I++G+ G+ WA+ L+ MYVRWA+K
Sbjct: 100 ADAERESLRSDIQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYVRWAEK 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 160 HGYGVEVYDTSYAEEAGLKSATFAVKSPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|168182216|ref|ZP_02616880.1| peptide chain release factor 2 [Clostridium botulinum Bf]
gi|237793493|ref|YP_002861045.1| peptide chain release factor 2 [Clostridium botulinum Ba4 str. 657]
gi|182674541|gb|EDT86502.1| peptide chain release factor 2 [Clostridium botulinum Bf]
gi|229262967|gb|ACQ54000.1| peptide chain release factor 2 [Clostridium botulinum Ba4 str. 657]
Length = 325
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFTVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++V+P L +++I EDL + + G+ + + A I HIPTGI V+
Sbjct: 175 SFASIEVLPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQ 232
>gi|390935721|ref|YP_006393226.1| Peptide chain release factor 2 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389571222|gb|AFK87627.1| Peptide chain release factor 2 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 327
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 11/236 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D KS E+ K D ++++ + L + E+ + +L +E D L + +
Sbjct: 5 DFWSDLEKSQELSKKQKDLKEIISEYEALEKQWEDLHTLIELG-LEEGDESLSQEVHDEY 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK ++ ++ LL GP D A ++I AG+ G + W E LL MY+RWA + Y
Sbjct: 64 KALSKKVNDMKIKTLLSGPYDKNNAILSIHAGAGGTEAQDWTEMLLRMYMRWASSKNYDV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD + GVKS TI + +A+GYL E G H L+ + + + A V+V+
Sbjct: 124 ETVDYLPGDDAGVKSVTIMVKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHTSFALVEVL 183
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P E D++ I EDL + S G+ + + A I H+PTGI V+ T
Sbjct: 184 P---EIDDDIKVDIRPEDLKIDTYRSSGAGGQHVNKTESAIRITHLPTGIIVQCQT 236
>gi|336429368|ref|ZP_08609334.1| peptide chain release factor 2 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336002679|gb|EGN32781.1| peptide chain release factor 2 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 334
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P SN+ + +L + V ++ L + E+ + + ++ E D R+ L
Sbjct: 6 FWDNPEYSNKKMKELKNLKDTVEQIEHLSTQYEDIETLIEMGNEE--DDESMAEEIRSEL 63
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + L+ +S LL G D GA + + AG+ G W L MY RWA+++G+
Sbjct: 64 DSFTDELETLRISTLLTGEYDKNGAILKLNAGAGGTESCDWCSMLYRMYTRWAERKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + +DV+
Sbjct: 124 EVLDYLDGDEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAQGKRQTSFVSLDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D++I++EDL + S G+ + A I H+PTGI V+
Sbjct: 184 P-DIEEDLDIEINEEDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQ 233
>gi|418322606|ref|ZP_12933924.1| peptide chain release factor 2 [Staphylococcus pettenkoferi VCU012]
gi|365231322|gb|EHM72373.1| peptide chain release factor 2 [Staphylococcus pettenkoferi VCU012]
Length = 332
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + WDD K+ E++ K VVN +DL E+ +L E D + +
Sbjct: 1 MMADPSFWDDQNKAQEIIDKNNALKSVVNGFRDLESTLEDMDATRELL-AEEYDEDMKQD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D LD +E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LESDVEDYQSKLDSFELQLLLDGPYDANNAILELHPGAGGTESQDWTSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ V D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVEVADYLPGDEAGVKSVTLIIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPEFDNNEIEIEINPDDISVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|194337758|ref|YP_002019552.1| peptide chain release factor 2 [Pelodictyon phaeoclathratiforme
BU-1]
gi|194310235|gb|ACF44935.1| peptide chain release factor 2 [Pelodictyon phaeoclathratiforme
BU-1]
Length = 363
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 19/235 (8%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRAS 65
W+D +N+VL +L + +A + + KA + +A E++ +G A AS
Sbjct: 43 FWNDQKAANKVLKELNEHKSWTDAYEKIILKARSCQDEFDIAIELDDESFGEELTALIAS 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ D+S + E +L G +D A +TI AG+ G + WAE L MY+RWA+++G+
Sbjct: 103 IEHDISAI----EFKNMLSGKDDAGNAMITIHAGAGGTEAQDWAEMLYRMYMRWAERKGF 158
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ D G+K+AT+E E YA+GYL E G H L+ F + + H + A V
Sbjct: 159 KIYTDDYQEGDGAGIKTATLEIEGPYAYGYLKAENGVHRLVRVSPFDSNARRH-TSFASV 217
Query: 181 DVVPLFLETSPDLQIS--DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E PD++I EDL F S G+ + + A I+H+PTGI V
Sbjct: 218 FTYP---EAPPDVEIDVRKEDLELSTFRSGGKGGQNVNKVETAVRIKHLPTGIVV 269
>gi|338814372|ref|ZP_08626393.1| peptide chain release factor 2 [Acetonema longum DSM 6540]
gi|337273694|gb|EGO62310.1| peptide chain release factor 2 [Acetonema longum DSM 6540]
Length = 335
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P + +V+ +L +R + E+ + + +L M+ D ++ A
Sbjct: 10 FWDEPVGAQKVMQELTGLKDTAADYYAMRRRYEDMETLWRLG-MDEKDESVYSDVTEAMQ 68
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++ E++ +L G D A VT+ AG+ G + WA+ LL MYVRWA+K+G+
Sbjct: 69 QLQAEIEHLELTLMLSGEYDANNAIVTLHAGAGGTEAQDWAQMLLRMYVRWAEKQGFTVD 128
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKSAT+ A+GYL E G H L+ + S + A VD++P
Sbjct: 129 TLDFLAGDEAGVKSATLLISGRNAYGYLRSEKGVHRLVRISPFDASGRRHTSFAAVDIMP 188
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ + ++ I+ DL + + G+ + A + HIPTGI V+
Sbjct: 189 E-IDENVEIAINPADLKVDTYRASGAGGQHINKTDSAVRMTHIPTGIIVQ 237
>gi|167767702|ref|ZP_02439755.1| hypothetical protein CLOSS21_02237 [Clostridium sp. SS2/1]
gi|429761689|ref|ZP_19294105.1| peptide chain release factor 2 [Anaerostipes hadrus DSM 3319]
gi|167710441|gb|EDS21020.1| peptide chain release factor 2 [Clostridium sp. SS2/1]
gi|291558928|emb|CBL37728.1| bacterial peptide chain release factor 2 (bRF-2)
[butyrate-producing bacterium SSC/2]
gi|429183124|gb|EKY24193.1| peptide chain release factor 2 [Anaerostipes hadrus DSM 3319]
Length = 373
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ +S V+ ++ VV DL+ K E+ + + +AE E D L + A
Sbjct: 46 FWDNVEESQNVMKEVKSLKGVVEEYDDLKTKYEDIETLIDMAE-EDEDADLIEEATALMD 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K ++ +S LL G D + A +T+ AG+ G WA L M+ RWA K+GY
Sbjct: 105 EFEKTYEELRISTLLTGEYDKDDAILTLHAGAGGTESCDWAGMLYRMFTRWAGKKGYGTE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS T++ A+GYL E G H L+ N + + + A DV+P
Sbjct: 165 VLDYLDGDEAGIKSVTVKITGMNAYGYLRSEKGVHRLVRISPFNAAGKRQTSFASCDVMP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ +++I+DED+ + + G+ + A I H+PTGI V+
Sbjct: 225 -DIKDDIEVEIADEDIRIDTYRASGAGGQHINKTDSAIRITHLPTGIVVQ 273
>gi|344344357|ref|ZP_08775220.1| peptide chain release factor 2 [Marichromatium purpuratum 984]
gi|343804027|gb|EGV21930.1| peptide chain release factor 2 [Marichromatium purpuratum 984]
Length = 365
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 74 QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCC 133
+ E ++ G D A V I+AGS G + W+E LL MY+RW ++ G++ +++
Sbjct: 112 ELEFRRMFSGEMDANNAFVDIQAGSGGTEAQDWSEMLLRMYLRWGERRGFKTELMEASAG 171
Query: 134 KNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETS 190
+ G+KSATI+FE EYAFG+L ETG H L+ F +G+ H + A V V P ++ +
Sbjct: 172 EVAGIKSATIKFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVFVSP-EIDDT 229
Query: 191 PDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
D++I+ DL ++ + G+ + + A I H PTGI +
Sbjct: 230 VDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHNPTGIVTQ 273
>gi|347750934|ref|YP_004858499.1| peptide chain release factor 2 [Bacillus coagulans 36D1]
gi|347583452|gb|AEO99718.1| peptide chain release factor 2 [Bacillus coagulans 36D1]
Length = 327
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD ++ +++ + ++VN ++L + E+ ++ +LA+ E D L +
Sbjct: 5 NFWDDQQEAQKIINESNALKEMVNGYRELESQQEDLEVTHELAKEEN-DSELKEELEAEL 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L++YE+ LL GP D A + + G+ G + W LL MY RW +K+G++
Sbjct: 64 EAFTEKLNEYELQLLLNGPYDANNAILELHPGAGGTESQDWCSMLLRMYTRWGEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D GVKS T+ F+ A+GYL E G H L+ F H + ++C +V
Sbjct: 124 ETLDYLPGDEAGVKSVTLLFKGHNAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P ++ + ++++ EDL + + G+ + A I HIPTGI V
Sbjct: 183 MPE-IDDNIEVEVRPEDLRVDTYRASGAGGQHINKTSSAVRITHIPTGIVV 232
>gi|256375089|ref|YP_003098749.1| peptide chain release factor 2 [Actinosynnema mirum DSM 43827]
gi|255919392|gb|ACU34903.1| peptide chain release factor 2 [Actinosynnema mirum DSM 43827]
Length = 367
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD K+ V +L+ + + LR + ++ ++ +LAE E D G A
Sbjct: 43 DLWDDQEKAQRVTSQLSHKQGELRRVTALRGRLDDLGVLYELAEDEG-DEGSAAEADTER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A VT++A + G+ +AE LL MY RWA++ Y
Sbjct: 102 AKLREEISSLEVRTLLSGEYDARDALVTVRAEAGGVDAADFAEMLLRMYSRWAERHNYAV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+VV
Sbjct: 162 DVFDTSYAEEAGIKSATFRVTAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVV 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I +++L ++ S G+ + A + HIPTGI V
Sbjct: 222 PV-VEQTDHVEIDEKELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 270
>gi|119505213|ref|ZP_01627288.1| tRNA pseudouridine synthase D, TruD [marine gamma proteobacterium
HTCC2080]
gi|119458904|gb|EAW40004.1| tRNA pseudouridine synthase D, TruD [marine gamma proteobacterium
HTCC2080]
Length = 347
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WD+P ++ + + A VV + DL + ++ + ++A E D +
Sbjct: 27 SVWDEPERAQALGKERASLELVVKTIDDLDRGSTDSHDLLEMAVAED-DIDTADMVASDT 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L++ E ++ G D A + +++GS G + W E LL MY+RW + +G++
Sbjct: 86 SDLIAQLEKLEFRRMFSGEMDPNNAYLDVQSGSGGTEAQDWTEMLLRMYLRWGESKGFKA 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
RVV+ + G+KSAT++FE EYAFG+L ETG H L+ F +G H + A + V
Sbjct: 146 RVVEASAGEVAGLKSATVQFEGEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFASIFV 204
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + ++ I+ DL + S G+ + A I H PT V
Sbjct: 205 SPE-IDDNIEIDINPADLRVDTYRSSGAGGQHVNTTDSAVRITHEPTNTVV 254
>gi|117924338|ref|YP_864955.1| peptide chain release factor 2 [Magnetococcus marinus MC-1]
gi|117608094|gb|ABK43549.1| bacterial peptide chain release factor 2 (bRF-2) [Magnetococcus
marinus MC-1]
Length = 379
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 7/236 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+ ++ NLW D ++ V+ + K + L ++ +A+ + ++A+ E D G+
Sbjct: 46 LAQDPNLWGDSERARTVMTEKNRLEKTIGEWDALNSESTDARDLLEMAQEEG-DSGMIAE 104
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ K L+ E++++L G D + I G+ G + WA LL MY+R+ +K
Sbjct: 105 VTAQVAAILKRLEGLELARMLSGEADANNCFIEIHPGAGGTESQDWASILLRMYLRYCEK 164
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD G+KS TI+ E +YA+GYL E+G H L+ + S +
Sbjct: 165 SGFKTEEVDYLAGDEAGIKSVTIKVEGDYAYGYLKVESGVHRLVRISPFDSSARRHTSFT 224
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V+V P ++ S +++I D+DL F + G+ + A I H PTGI V+
Sbjct: 225 SVNVYP-EIDDSIEIEILDKDLRVDTFRASGAGGQHVNKTDSAIRITHQPTGIVVQ 279
>gi|49483011|ref|YP_040235.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|56749421|sp|Q6GIN7.1|RF2_STAAR RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|49241140|emb|CAG39818.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 369
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ + VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVKTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>gi|375093798|ref|ZP_09740063.1| peptide chain release factor 2 [Saccharomonospora marina XMU15]
gi|374654531|gb|EHR49364.1| peptide chain release factor 2 [Saccharomonospora marina XMU15]
Length = 384
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V +L+ + + DLR + ++ ++ +LA E D A
Sbjct: 59 NLWDDPEAAQKVTSQLSYRQAELRRVTDLRQRVDDLGVLYELAVAEG-DEASRSEAETEL 117
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ +D E+ LL G DV A VTI++ + G+ WAE LL MY+RWA++ GY
Sbjct: 118 SQLTRDVDALEVRTLLSGEYDVRNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHGYPT 177
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 178 EVYDISYAEEAGIRSATFKVSGPYIYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 237
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+ V D+++ ++ S G+ + A I H+PTGI V
Sbjct: 238 PEVEEVDHVDVPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVV 286
>gi|420199740|ref|ZP_14705411.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM031]
gi|394271490|gb|EJE15983.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM031]
Length = 333
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D + K
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDDDMKKE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|291515566|emb|CBK64776.1| bacterial peptide chain release factor 2 (bRF-2) [Alistipes shahii
WAL 8301]
Length = 370
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 5/186 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+P K+ E L K+A V +R AE+ +L+ + + Y A+
Sbjct: 41 NFWDNPDKAREQLRKVAGIKAWVEDYDAIRKDAEDLQLMPDFVKEGVVSEEEMDAHYAAT 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L+ +++ EM +LR D GA + I AG+ G WA L+ MY RW + GY+
Sbjct: 101 LEK---IEKLEMRNMLRRDEDKLGAILDINAGAGGTEALDWASMLMRMYTRWGEAHGYKV 157
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D GVKS T+EFE EYA+GYL E G H ++ N + + T A V V
Sbjct: 158 KVLDFQAGDEVGVKSCTLEFEGEYAYGYLKSENGVHRMVRLSPFNANNKRQTTFASVFVS 217
Query: 184 PLFLET 189
P +T
Sbjct: 218 PAVDDT 223
>gi|418619449|ref|ZP_13182277.1| peptide chain release factor 2 [Staphylococcus hominis VCU122]
gi|374824495|gb|EHR88453.1| peptide chain release factor 2 [Staphylococcus hominis VCU122]
Length = 331
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ K+ +V+ K +VN +L +K E+ +L + E D + + +
Sbjct: 5 DFWDNQNKAQDVIDKNNALKSIVNGYYELNHKLEDMDATWELLQ-EEYDDEIKEDLEQDI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ +++G++
Sbjct: 64 VSFREQIDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQQGFKI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETIDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PEFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|357421204|ref|YP_004928653.1| peptide chain release factor 2 [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803714|gb|AER40828.1| peptide chain release factor 2 [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 363
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 13/239 (5%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
+ N N W + K ++ +K +S+K + +L+ EE ++I L++ E ++ K
Sbjct: 39 ISNPNFWKNSKKESKNFIKRFNSMKTCMQNFFELKNSLEELEIIFSLSKEENLE----KE 94
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ KLLD E+ L + D A + I +G+ G W L+ MY WA+K
Sbjct: 95 LKIQFIKTKKLLDDIELKNLFQDNEDYYNAILQISSGAGGTESCDWTSMLMRMYTMWAEK 154
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
+ Y + + G+K+ T+EF YAFGYL GE G H LI F N S H +
Sbjct: 155 KKYSVKNIHLIHGDITGIKTVTLEFNGIYAFGYLKGENGVHRLIRISPFDNNSKRH-TSF 213
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
+ V V PL ++ ++++ D+ F S G+ + + ++HIPTGI + T
Sbjct: 214 SSVYVYPL-VDKKVEVEVKSSDIHWETFRSSGAGGQNVNKVETGVRLRHIPTGIVIENT 271
>gi|417905767|ref|ZP_12549566.1| peptide chain release factor 2 [Staphylococcus capitis VCU116]
gi|341598661|gb|EGS41161.1| peptide chain release factor 2 [Staphylococcus capitis VCU116]
Length = 333
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + N W+D K+ E++ K +VN DL + ++ +L + E D + +
Sbjct: 1 MMADPNFWNDQNKAQEIIDKNNALKSIVNGYHDLANEVDDMSATRELLQ-EEYDEDMKEE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LENTVIQFKDKMDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G+ VD GVKS + + A+GYL E G H L+ + S + A
Sbjct: 120 NGFNVETVDYLPGDEAGVKSVKLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|395203753|ref|ZP_10394846.1| peptide chain release factor 2 [Propionibacterium humerusii P08]
gi|422439222|ref|ZP_16516045.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA3]
gi|422470709|ref|ZP_16547209.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA2]
gi|422574464|ref|ZP_16650018.1| peptide chain release factor 2 [Propionibacterium acnes HL044PA1]
gi|313837551|gb|EFS75265.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA2]
gi|314927570|gb|EFS91401.1| peptide chain release factor 2 [Propionibacterium acnes HL044PA1]
gi|314972490|gb|EFT16587.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA3]
gi|328907839|gb|EGG27602.1| peptide chain release factor 2 [Propionibacterium humerusii P08]
Length = 371
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 47 NLWDDQENAQWVTSRLSALQAEIERLERLRARIEDVHVLLEFATADD-DKESLTEATSET 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++ GY+
Sbjct: 106 VKLREEIDALEVRILLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWAERHGYKV 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +++G LS E G H L+ + + + A V+V+
Sbjct: 166 EILDTSYAEEAGIKSATFVVHAPFSYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 226 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 274
>gi|379335403|gb|AFD03384.1| protein chain release factor B [uncultured bacterium W5-51b]
Length = 330
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 113/236 (47%), Gaps = 21/236 (8%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME---AIDYGLFKRAYR 63
WDD + + ++ K V L + EA +A L + I+ GL
Sbjct: 6 FWDDADSARATVEEIRQIKKWVEPFTRLEQRTVEALELADLVSEDPDPEIESGL------ 59
Query: 64 ASLDVSKLL---DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +V LL E+ +LRG +D A +TI G+ G + WAE L+ MY RWA++
Sbjct: 60 -ADEVPSLLAGVQHLELMNMLRGSDDHRSAILTIHPGAGGTESQDWAEMLMRMYTRWAER 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
GY V+D + G+KS +E EYA+GYL E G H L+ F S H +
Sbjct: 119 RGYVISVMDLLAGEEAGLKSVALEIGGEYAYGYLKAEKGVHRLVRISPFDAQSRRH-TSF 177
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V V PL ++ S ++ + DED+ +F + G+ + A ++H P+GIAV
Sbjct: 178 ASVFVYPL-VDDSIEIDVRDEDIEMEVFRASGAGGQHVNKTSSAVRLRHTPSGIAV 232
>gi|90409172|ref|ZP_01217287.1| putative peptide chain release factor 2 [Psychromonas sp. CNPT3]
gi|90309717|gb|EAS37887.1| putative peptide chain release factor 2 [Psychromonas sp. CNPT3]
Length = 349
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W+DP ++ + L K +L+ +V +K L +E ++ +LA ++ D F A +
Sbjct: 30 VWNDPERA-QALGKERSALELIVETIKALEIGCDEILMLVELA-VDEQDQDTFDEAANET 87
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L++ K L+ E ++ G ND + I++GS G + WA LL MY+RW + GY+
Sbjct: 88 LELEKKLEVLEFRRMFSGKNDSCSCYLDIQSGSGGTEAQDWANMLLRMYLRWGEANGYKT 147
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ G+K ATI F EYA+G+L ETG H L+ + S + A V
Sbjct: 148 ELMEVSAGDVAGIKGATIRFSGEYAYGWLRTETGVHRLVRKSPFDSSGKRHTSFASAFVY 207
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E + D+ I+ +L ++ + G+ + + A I H+PT I V+
Sbjct: 208 PE-VEDNIDIVINPAELRIDVYRASGAGGQHVNTTESAVRITHLPTNIVVQ 257
>gi|336113350|ref|YP_004568117.1| peptide chain release factor 2 [Bacillus coagulans 2-6]
gi|335366780|gb|AEH52731.1| peptide chain release factor 2 [Bacillus coagulans 2-6]
Length = 331
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD ++ +++ + ++VN ++L + E+ ++ +LA+ E D L +
Sbjct: 9 NFWDDQQEAQKIINESNALKEMVNGYRELESQQEDLEVTYELAKEEN-DQELKEELEAEL 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L++YE+ LL GP D A + + G+ G + W LL MY RW +K+G++
Sbjct: 68 EGFTEKLNEYELQLLLNGPYDANNAILELHPGAGGTESQDWCSMLLRMYTRWGEKKGFKV 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D GVKS T+ F+ A+GYL E G H L+ F H + ++C +V
Sbjct: 128 ETLDYLPGDEAGVKSVTLLFKGHNAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EV 186
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P ++ + ++++ EDL + + G+ + A I HIPTGI V
Sbjct: 187 MPE-IDDNIEVEVRPEDLRVDTYRASGAGGQHINKTSSAVRITHIPTGIVV 236
>gi|403382580|ref|ZP_10924637.1| protein PrfB [Paenibacillus sp. JC66]
Length = 334
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ +++ +L VV L + E+ +++ LAE E D L
Sbjct: 5 DFWDDNDRAQKMIAELNAVKDVVAEFASLNQEYEDLEVMLMLAEEEG-DESLESELQEGV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ L YE+ LL P D A + + G+ G + WAE LL MY RWA+K Y+
Sbjct: 64 AKLTEKLKSYELQLLLSEPYDRMNAILELHPGAGGTESQDWAEMLLRMYRRWAEKRDYKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D GVKS T+ + A+GYL E G H L+ F + H + ++C DV
Sbjct: 124 EVLDYLPGDEAGVKSVTLLIKGFNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VP ++ D++I EDL + + G+ + A I HIPT + V
Sbjct: 183 VP-EIDDDVDIEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHIPTNVVV 232
>gi|379734499|ref|YP_005328005.1| peptide chain release factor 2 [Blastococcus saxobsidens DD2]
gi|378782306|emb|CCG01966.1| Peptide chain release factor 2 [Blastococcus saxobsidens DD2]
Length = 370
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + + KL+ + +++LR + E+ L+ ++A E D A R
Sbjct: 43 DLWDDVEAAQALTSKLSYMQGDLRRVEELRGRLEDVGLLHEMA-AEENDEATTAEAEREL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K++ + E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ Y
Sbjct: 102 ENLQKVIAELEVRTLLSGEYDSREALVTIRSEAGGVDAADFAEMLMRMYLRWAERHKYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDVSYAEEAGIKSATFTVKVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + ++ +F S G+ + A + HIPTGI V
Sbjct: 222 PV-VEQTDHVEIPENEIRVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 270
>gi|375099193|ref|ZP_09745456.1| peptide chain release factor 2 [Saccharomonospora cyanea NA-134]
gi|374659925|gb|EHR59803.1| peptide chain release factor 2 [Saccharomonospora cyanea NA-134]
Length = 368
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDPEVAQKVTSQLSHKQASLRRVTELRQRVDDLAVLHELAEAEG-DAASRSEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+++ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 TDITRDVDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHDYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
+V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 162 QVYDISYAEEAGIRSATFKVSGPYLYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 221
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+ V D+++ ++ S G+ + A I H+PTGI V
Sbjct: 222 PEVEEVDHVEVPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>gi|404497221|ref|YP_006721327.1| peptide chain release factor 2 [Geobacter metallireducens GS-15]
gi|403378100|gb|ABB32591.2| peptide chain release factor 2 [Geobacter metallireducens GS-15]
Length = 372
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ ++L + K++ L +A++ +++ +L E EA D G +
Sbjct: 44 FWDDNEKAQQLLRERTRIEKILELWDRLTRQADDIRVLIELGE-EAGDEGTLDEVRALND 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K ++ E ++L G +D +I AG+ G + WAE LL MY+R+ +++G++
Sbjct: 103 QLEKDVEGAEFQRMLSGTHDKNACYFSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKTE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D GVKSAT + EYA+GYL E G H L+ F + + H + A V
Sbjct: 163 ITDYQGGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFAF 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
P +E ++ I++ DL + S G+ + A I HIPTG+
Sbjct: 222 PE-IEDDIEVTINEADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGL 268
>gi|149177843|ref|ZP_01856442.1| peptide chain release factor 2 (RF-2) [Planctomyces maris DSM 8797]
gi|148843333|gb|EDL57697.1| peptide chain release factor 2 (RF-2) [Planctomyces maris DSM 8797]
Length = 331
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 10/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ ++ ++ VV L L AE+ +++ + E E + + + + A
Sbjct: 6 FWDNQEKAQGLVNEMQQIQLVVKPLTQLVEGAEDLEVLIEFIEEEGSEDSIPELSATAER 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +L+ E+ ++ P D A ++I+AG G WAE LL MY+RW ++ G+
Sbjct: 66 -LESILEHLELQAMMSAPEDGSAAYLSIQAGEGGTDSSDWAEMLLRMYLRWCERRGFNVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++D+ + G++SATI E +YA+GYL GETG H LI F + H + A VDV
Sbjct: 125 LLDRSDAEEAGIRSATIRIEGDYAYGYLKGETGNHRLIRISPFDSAGRRH-TSFAAVDVS 183
Query: 184 PLFLETSPDLQIS-DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E + +++IS D+D+ + + G+ + A + H+ + + V+
Sbjct: 184 PDMGEVA-EIEISWDQDVREDTYRASGAGGQHINKTDSAIRLTHLESNVVVQ 234
>gi|409390739|ref|ZP_11242451.1| peptide chain release factor 2 [Gordonia rubripertincta NBRC
101908]
gi|403199116|dbj|GAB85685.1| peptide chain release factor 2 [Gordonia rubripertincta NBRC
101908]
Length = 373
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
+LW+D + +V +L+ + + + +LR + E+ + +LAE E
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLEDLPVHYELAESEEGEDKAAALADADE 104
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R+SL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 105 ERSSLRAD--IEAMEVKTMLAGEYDSREAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 162
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 163 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 221
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 275
>gi|417896571|ref|ZP_12540517.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21235]
gi|341840537|gb|EGS82040.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21235]
Length = 331
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQVEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|418066617|ref|ZP_12703977.1| peptide chain release factor 2 [Geobacter metallireducens RCH3]
gi|373560110|gb|EHP86382.1| peptide chain release factor 2 [Geobacter metallireducens RCH3]
Length = 338
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ ++L + K++ L +A++ +++ +L E EA D G +
Sbjct: 10 FWDDNEKAQQLLRERTRIEKILELWDRLTRQADDIRVLIELGE-EAGDEGTLDEVRALND 68
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K ++ E ++L G +D +I AG+ G + WAE LL MY+R+ +++G++
Sbjct: 69 QLEKDVEGAEFQRMLSGTHDKNACYFSINAGAGGTEAQDWAEMLLRMYLRYCERKGWKTE 128
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ D GVKSAT + EYA+GYL E G H L+ F + + H + A V
Sbjct: 129 ITDYQGGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVRISPFDSNARRH-TSFASVFAF 187
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
P +E ++ I++ DL + S G+ + A I HIPTG+
Sbjct: 188 PE-IEDDIEVTINEADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGL 234
>gi|418567878|ref|ZP_13132239.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21272]
gi|371981376|gb|EHO98557.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21272]
Length = 330
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 8/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + A+GYL E G H L+ F + H + ++C DV
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 183 IPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|323359619|ref|YP_004226015.1| protein chain release factor B [Microbacterium testaceum StLB037]
gi|323275990|dbj|BAJ76135.1| protein chain release factor B [Microbacterium testaceum StLB037]
Length = 370
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRA 64
+LWDD + +V +L+ + + ++ + ++ +++ +LA EM+ D R A
Sbjct: 44 DLWDDVDNAQKVTSRLSHRQAELKRITEIEQRLDDLEVLVELAIEMDDEDSADEARRELA 103
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
SL ++ Q E+ LL G D A VTI++G+ G +AE LL MY+RWA++ Y
Sbjct: 104 SL--KDVIGQLEVQTLLDGEYDSRSAVVTIRSGAGGDDATDFAEMLLRMYLRWAERHKYP 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L G+ + + A V+V
Sbjct: 162 VKVMDTSYAEGAGIKSATFEVDVPYAYGTLSVEAGTHRLARISPFGGADKRQTSFAAVEV 221
Query: 183 VPLFLETSP------DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ E D+++ +F S G+ + A I HIPTG+ V
Sbjct: 222 IPVMEEAVEVEVPEGDIRVD----VFRSSGPGGQSVNTTDSAVRITHIPTGLVV 271
>gi|386814651|ref|ZP_10101869.1| bacterial peptide chain release factor 2 (bRF-2) [Thiothrix nivea
DSM 5205]
gi|386419227|gb|EIJ33062.1| bacterial peptide chain release factor 2 (bRF-2) [Thiothrix nivea
DSM 5205]
Length = 364
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP ++ E+ + + +V + + +AK + +LAEME D A A
Sbjct: 44 DVWNDPKRAQELGKERSVLDGIVGGIDKITSGLADAKELLELAEME--DDEASANAVIAD 101
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+D + + E ++ G D+ A + I+AGS G + WAE LL MY+RW + +G++
Sbjct: 102 VDSIENEVKTLEFQRMFCGEMDMNNAFLDIQAGSGGTEAQDWAEMLLRMYLRWGEAKGFK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ G+K ATI FE YAFG+L ETG H L+ F +G+ H + V
Sbjct: 162 TELIEATAGDVAGIKGATISFEGPYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFTGVF 220
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + D+ I+ DL ++ + G+ + + A I HIPT V+
Sbjct: 221 VSP-EVDDNIDIDINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTNTVVQ 272
>gi|418576816|ref|ZP_13140948.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379324481|gb|EHY91627.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 335
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K VVNA + L + E+ L +E D + +
Sbjct: 1 MMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQD 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEQSVQDFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ + D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F T ++ I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|148652647|ref|YP_001279740.1| peptide chain release factor 2 [Psychrobacter sp. PRwf-1]
gi|148571731|gb|ABQ93790.1| bacterial peptide chain release factor 2 (bRF-2) [Psychrobacter sp.
PRwf-1]
Length = 325
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+DP ++ ++ + + V+ + L E+A + +LA +EA D GL +
Sbjct: 6 LWNDPERATKISKEKSQLDAVITTITGLDTTLEDAAAMLELA-VEADDEGLLEEVQNELN 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
L++ E ++ G D V I++GS G + WAE LL MY RW + G++
Sbjct: 65 AAQALVEDLEFKRMFDGEMDANNCFVDIQSGSGGTEAQDWAEMLLRMYTRWCESHGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ GVKSA+ + +YAFG+L ETG H L+ F + + H + A V V
Sbjct: 125 IIEVSAGSVAGVKSASFKVSGDYAFGWLRTETGVHRLVRKSPFDSNNGRH-TSFAAVFVS 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ ++ I+ DL + S G+ + A I H+PTG V+
Sbjct: 184 PE-IDDDFEIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTGTVVQ 233
>gi|424828125|ref|ZP_18252866.1| peptide chain release factor 2 [Clostridium sporogenes PA 3679]
gi|365979608|gb|EHN15661.1| peptide chain release factor 2 [Clostridium sporogenes PA 3679]
Length = 327
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 119/238 (50%), Gaps = 14/238 (5%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
++N N WDD ++ ++ + L D L N DL+ E+ + ++ + D G
Sbjct: 1 MQNPNFWDDIKEAQKITSEEKYLKDKLIKYN---DLKSTIEDIISLCEMLSDDDDDMG-- 55
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K ++ + +D++++ LL G D +T+ +G G + W + L MY RWA
Sbjct: 56 KEILSEYKNIKEEIDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRWA 115
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + + +
Sbjct: 116 EKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQTS 175
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
A ++V+P L +++I EDL + + G+ + + A I HIPTGI V+
Sbjct: 176 FASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQ 232
>gi|225020766|ref|ZP_03709958.1| hypothetical protein CORMATOL_00773 [Corynebacterium matruchotii
ATCC 33806]
gi|224946468|gb|EEG27677.1| hypothetical protein CORMATOL_00773 [Corynebacterium matruchotii
ATCC 33806]
Length = 368
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L+ LR + + ++ +LAE E + A
Sbjct: 43 SLWDDPEHAQQVTSELSQVQVQLKRLQSLRSRLTDLPIMYELAEEEGEGADI---ADEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ +D E++ +L G D A + I++G+ G+ WAE L+ MY+RWA+K+G +
Sbjct: 100 ADLRADIDALEVTTMLSGEYDSREALINIRSGAGGVDAADWAEMLMRMYIRWAEKQGRKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E G H L+ + + + A V+V+
Sbjct: 160 EVYDISYAEEAGIKSATFIVHGEYMYGTLSVEQGVHRLVRISPFDNQARRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I D +L ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEITDHIDIPDSELRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|404406148|ref|ZP_10997732.1| peptide chain release factor 2 [Alistipes sp. JC136]
Length = 370
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 5/186 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+P K+ E L K+A V+ +R AE+ L+ + + Y A+
Sbjct: 41 NFWDEPDKAREQLRKVAAIKAWVDDYDAVRKDAEDLALMPDFVKEGVVTEAEMDAHYTAT 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L+ ++ EM +LR D GA + I AG+ G WA L+ MY RW + GY+
Sbjct: 101 LEK---IEDLEMRNMLRREEDKLGAILDINAGAGGTEALDWASMLMRMYTRWGEAHGYKV 157
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D GVKS T+EFE EYA+GYL E G H ++ N + + T A V V
Sbjct: 158 KVLDYQAGDEVGVKSCTMEFEGEYAYGYLKSENGVHRMVRLSPFNANNKRQTTFASVFVS 217
Query: 184 PLFLET 189
P +T
Sbjct: 218 PAVDDT 223
>gi|148270343|ref|YP_001244803.1| peptide chain release factor 2 [Thermotoga petrophila RKU-1]
gi|166225119|sp|A5IM04.1|RF2_THEP1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|147735887|gb|ABQ47227.1| bacterial peptide chain release factor 2 (bRF-2) [Thermotoga
petrophila RKU-1]
Length = 367
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVV 269
>gi|313672869|ref|YP_004050980.1| peptide chain release factor 2 [Calditerrivibrio nitroreducens DSM
19672]
gi|312939625|gb|ADR18817.1| bacterial peptide chain release factor 2 (bRF-2) [Calditerrivibrio
nitroreducens DSM 19672]
Length = 371
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ ++++ +E+ +L G ND+ A +TI +G+ G WA LL MY+RWA+ ++
Sbjct: 101 ELKQIVNDFELKLILNGENDINNAILTIHSGAGGTEANDWANMLLRMYIRWAENRKFKYE 160
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D G+KSAT+ YA+GYL GETG H L+ + + + A V V+P
Sbjct: 161 MLDYQAGDEAGIKSATLNIIGPYAYGYLKGETGVHRLVRLSPFDANNKRHTSFASVFVLP 220
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+E D+ I++ DL F + G+ + A I H+PTGI V
Sbjct: 221 E-IEDDVDIVINESDLKIDTFRAGGAGGQHVNTTDSAVRITHLPTGIVV 268
>gi|441513034|ref|ZP_20994866.1| peptide chain release factor 2 [Gordonia amicalis NBRC 100051]
gi|441452015|dbj|GAC52827.1| peptide chain release factor 2 [Gordonia amicalis NBRC 100051]
Length = 371
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK----RA 61
+LW+D + +V +L+ + + + +LR + ++ + +LA+ E D A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLDDLPVHYELADAEEGDDKTAALADADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RASL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 103 ERASLRAD--IEAMEVKTMLAGEYDSREALVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|217077931|ref|YP_002335649.1| peptide chain release factor 2 [Thermosipho africanus TCF52B]
gi|419760522|ref|ZP_14286797.1| peptide chain release factor 2 [Thermosipho africanus H17ap60334]
gi|226739131|sp|B7IE81.1|RF2_THEAB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|217037786|gb|ACJ76308.1| peptide chain release factor 2 [Thermosipho africanus TCF52B]
gi|407514360|gb|EKF49187.1| peptide chain release factor 2 [Thermosipho africanus H17ap60334]
Length = 369
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D K+ E+ K K+++ +KD+ K E+ +L++ D +
Sbjct: 44 DFWSDQRKAREISQKAQRIRKIIDDMKDIEAKFEDLDAAIELSDE---DQSFVETIKEMV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K + +E+ +L G D A +TI G+ G + WA LL MY+RWA+++G+
Sbjct: 101 EEIEKKVKTFELELILNGKFDASNAYLTIHPGAGGTESQDWASMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++VD + G+KSA I + +YA+GYL E G H L+ + + + A V+V+
Sbjct: 161 QIVDYQPGEEAGIKSAMIYIKGDYAYGYLKYERGVHRLVRISPFDANKRRHTSFASVNVI 220
Query: 184 PLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P + DL+I + + G+ + + A I HIPTGI V
Sbjct: 221 PEIDDDIDIEINPEDLRID----TYRASGAGGQYVNKTESAVRITHIPTGIVV 269
>gi|403508387|ref|YP_006640025.1| peptide chain release factor 2 [Nocardiopsis alba ATCC BAA-2165]
gi|402801847|gb|AFR09257.1| peptide chain release factor 2 [Nocardiopsis alba ATCC BAA-2165]
Length = 370
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW D + +V +L+ +VN + + + ++ ++ +LAE E D A R
Sbjct: 45 LWADQDNAQKVTRRLSTLESMVNKVGGIGRRLDDLGVLYELAEAED-DPDTRAEADRELE 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + + E+ LL GP+D A VTI + + G+ WA+ L MY+RWA++ G+
Sbjct: 104 QLRKEIGELEVRTLLNGPHDEREAIVTINSQAGGVDAADWAQMLQRMYLRWAERHGHPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ + + G+KS + + +A+G L GE G H L+ + + + A VDVVP
Sbjct: 164 IYETSYAEEAGIKSTSFAVKSAFAYGTLRGEHGTHRLVRISPFDNQNRRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E S ++I + +L ++ S G+ + A I H+PTGI V
Sbjct: 224 M-VEQSDHIEIDETELRVDVYRSSGPGGQGVNTTDSAVRITHMPTGIVV 271
>gi|15644327|ref|NP_229379.1| peptide chain release factor 2 [Thermotoga maritima MSB8]
gi|7388057|sp|Q9X1R5.1|RF2_THEMA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|4982148|gb|AAD36646.1|AE001802_15 peptide chain release factor RF-2 [Thermotoga maritima MSB8]
Length = 369
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 46 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 103 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 163 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 223 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVV 271
>gi|299144433|ref|ZP_07037513.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518918|gb|EFI42657.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 348
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ + +V+ + ++ L EA+ + L EME DY +
Sbjct: 26 FWDNAENAQKVIREQNHYQSKIDKYDKLIKSINEAEDLIDLMEMED-DYSFYGDLKLDLE 84
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ KL + +++ LL G D ++I AG+ G + WA L MYVR+A+K G+R
Sbjct: 85 NIEKLSNDFKLETLLNGEYDSNNCIISIHAGAGGTEAQDWASMLNRMYVRYAEKRGFRVE 144
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + G+KS T+ + A+GYL GE G H L+ + + + A +DV P
Sbjct: 145 TLDMLKEEEAGIKSVTLLITGDNAYGYLKGEKGVHRLVRISPFDANKRRHTSFASLDVYP 204
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L+ +++I EDL + S G+ + A I HIPTGI V+
Sbjct: 205 Q-LDDDNEVEIKAEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 253
>gi|418581468|ref|ZP_13145549.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418891396|ref|ZP_13445513.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418897171|ref|ZP_13451244.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418900141|ref|ZP_13454200.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418908547|ref|ZP_13462555.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG149]
gi|418916619|ref|ZP_13470580.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418922423|ref|ZP_13476340.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418981657|ref|ZP_13529372.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985295|ref|ZP_13532984.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377705223|gb|EHT29531.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377707137|gb|EHT31431.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377707477|gb|EHT31770.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377711695|gb|EHT35924.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377732353|gb|EHT56404.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377735746|gb|EHT59776.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377751124|gb|EHT75058.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377755886|gb|EHT79784.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG149]
gi|377761950|gb|EHT85819.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 330
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 KTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|400535590|ref|ZP_10799126.1| peptide chain release factor 2 [Mycobacterium colombiense CECT
3035]
gi|400330633|gb|EJO88130.1| peptide chain release factor 2 [Mycobacterium colombiense CECT
3035]
Length = 370
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 21/238 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-------IDYGLF 58
LWDD ++ V +L+ + + +++LR + ++ ++ +LA E +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRVEELRGRLDDLPVLYELAAEEGEGAADALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGDYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 272
>gi|422558585|ref|ZP_16634325.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA2]
gi|328752610|gb|EGF66226.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA2]
Length = 370
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 8/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLW D + V +L+ + L+ LR + E+ ++ + A A D A +
Sbjct: 47 NLWGDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAA--ADDKESLAEATTET 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 105 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 165 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 225 PVVEETD-HVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 273
>gi|115311855|sp|Q49VV3.2|RF2_STAS1 RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 373
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K VVNA + L + E+ L +E D + +
Sbjct: 39 MMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 98 LEQSVQDFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ + D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F T ++ I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 218 SCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
>gi|332983173|ref|YP_004464614.1| peptide chain release factor 2 (bRF-2) [Mahella australiensis 50-1
BON]
gi|332700851|gb|AEE97792.1| bacterial peptide chain release factor 2 (bRF-2) [Mahella
australiensis 50-1 BON]
Length = 353
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D +S +V ++ + L+ + K E+ + +A L E D +
Sbjct: 27 SFWSDMERSQKVNQRIKALKDKLQNLRAVEQKWEDLRTLADLGR-EEDDASIVGEVAAEL 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K +++ + LL GP D A VT+ AG+ G + W + L MY RWA+ +GY+
Sbjct: 86 ASLRKEVERLRIETLLSGPYDRNNAIVTLHAGAGGTEAQDWVQMLYRMYTRWAEDKGYKV 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T E E A+GYL E G H L+ + + + A VDV+
Sbjct: 146 EVLDLLEGDEAGIKSVTFLVEGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFASVDVM 205
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ ++I+ EDL + S G+ + + A I HIPTGI V+
Sbjct: 206 P-ELDDDEGVEINPEDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGIVVQ 255
>gi|284023776|ref|ZP_06378174.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
132]
Length = 331
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|226947396|ref|YP_002802487.1| peptide chain release factor 2 [Clostridium botulinum A2 str.
Kyoto]
gi|226842678|gb|ACO85344.1| peptide chain release factor 2 [Clostridium botulinum A2 str.
Kyoto]
Length = 325
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++++P L +++I EDL + + G+ + + A I HIPTGI V+
Sbjct: 175 SFASIEILPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQ 232
>gi|170289031|ref|YP_001739269.1| peptide chain release factor 2 [Thermotoga sp. RQ2]
gi|281412649|ref|YP_003346728.1| peptide chain release factor 2 [Thermotoga naphthophila RKU-10]
gi|418045638|ref|ZP_12683733.1| peptide chain release factor 2 [Thermotoga maritima MSB8]
gi|238688848|sp|B1LB88.1|RF2_THESQ RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|170176534|gb|ACB09586.1| peptide chain release factor 2 [Thermotoga sp. RQ2]
gi|281373752|gb|ADA67314.1| peptide chain release factor 2 [Thermotoga naphthophila RKU-10]
gi|351676523|gb|EHA59676.1| peptide chain release factor 2 [Thermotoga maritima MSB8]
Length = 367
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVV 269
>gi|338707960|ref|YP_004662161.1| peptide chain release factor 2 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294764|gb|AEI37871.1| peptide chain release factor 2 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 375
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 15/238 (6%)
Query: 2 VRNYNLWDDPTKSNEVLV---KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
V + +LWDD + EV+ +L +S+ A++ R E LI E D +
Sbjct: 39 VEDPHLWDDARAAQEVMRERGRLDESIAATRAIE--RELQENIDLIEMAEAEEEED--MV 94
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
K A A +++ ++ ++ LL G D + + AG+ G + WAE L MY RWA
Sbjct: 95 KDAIAALAHLAERANRDKVKALLSGEADSNDTYIEVNAGAGGTESQDWAEMLSRMYQRWA 154
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++EG+R +VD + G+KSAT+ + E A+GY E G H L+ F + + H
Sbjct: 155 EREGFRVELVDYHAGEQAGIKSATLLIKGESAYGYAKTENGVHRLVRISPFDSNARRH-T 213
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V V P+ ++ D+++ D+DL + S G+ + A I H+PTGI V
Sbjct: 214 SFASVAVYPV-VDDDIDIEVLDKDLKIDTYRSSGAGGQHVNTTDSAVRITHMPTGIVV 270
>gi|417796172|ref|ZP_12443388.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21305]
gi|334270036|gb|EGL88444.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21305]
Length = 331
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|86739504|ref|YP_479904.1| peptide chain release factor 2 [Frankia sp. CcI3]
gi|123751448|sp|Q2JEW7.1|RF2_FRASC RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|86566366|gb|ABD10175.1| bacterial peptide chain release factor 2 (bRF-2) [Frankia sp. CcI3]
Length = 366
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 19/234 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
+LW D ++ V +L+ + + ++ LR + ++ A L D L A
Sbjct: 43 DLWSDQDRAQAVTRRLSSTRGDIARVEGLRRRLDDIAAAADLG-----DEDLLAEAAADL 97
Query: 63 -RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R S D++ L E+ LL G D A V + AG+ G+ W LL MY+RWA++
Sbjct: 98 PRLSSDIAGL----EVRTLLSGEYDERDAIVQLSAGAGGVDAADWTAMLLRMYLRWAERH 153
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + + YA+G L E G H L+ + + + A
Sbjct: 154 GYATEVFDTSEAEEAGLKSATFQVKAPYAYGTLRSEHGVHRLVRISPFDNQNRRQTSFAG 213
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V P+ +E S + I D+DL +F S G+ + A I H+PTGI V
Sbjct: 214 VEVTPV-VELSDHVDIDDKDLRIDIFRSSGPGGQGVNTTDSAVRITHLPTGIVV 266
>gi|227872846|ref|ZP_03991157.1| peptide chain release factor RF2 [Oribacterium sinus F0268]
gi|227841316|gb|EEJ51635.1| peptide chain release factor RF2 [Oribacterium sinus F0268]
Length = 378
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 15/237 (6%)
Query: 1 MVRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL 57
M+ + W DP K+N++ + L D L+ ALK E+ + + Q+ + E D +
Sbjct: 40 MMEEPDFWGDPEKANKLSTEARHLKDELEGFTALKG---NYEDIEALIQMGKEENDDSVI 96
Query: 58 FKRAYRASLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
+ R LD S+ LDQ + LL G D + + AG+ G WA L MY R
Sbjct: 97 PE--IRELLDSFSERLDQMNTTLLLSGEYDSMNVILRLNAGAGGTEANDWAGILYRMYTR 154
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHE 174
WA++ G+ +++D G+KS T+E EYA+GYL E+G H L+ N +
Sbjct: 155 WAERHGFTVKILDYLDGDEAGIKSVTMEVVGEYAYGYLRSESGIHRLVRISPFNAQGKRQ 214
Query: 175 ATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+ DV+P +ET D++I +ED+ +F + G+ + A + HIPTG
Sbjct: 215 TSFVSCDVMP-DIETDIDIEIREEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGF 270
>gi|409358684|ref|ZP_11237043.1| peptide chain release factor 2 [Dietzia alimentaria 72]
Length = 369
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 8/235 (3%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M + +LW+D ++ +V +L+ + + LR + E+ L+ +LAE E D
Sbjct: 38 MAADPDLWNDQERAQKVTSELSYVQADLRRCRALRQRVEDLPLMYELAEEEGEDAVAEAD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
RA+L + ++ E+ +L G D A V I+AG+ GI +A+ L+ MY+RWA+K
Sbjct: 98 LERANL--REDVEAMEVKTMLSGEYDQREAVVNIRAGAGGIDAADFADMLMRMYIRWAEK 155
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSAT Y +G LS E G H L+ + + + A
Sbjct: 156 AGHKVEVYDTSYAEEAGIKSATFVVRDPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 215
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 216 EVEVLPV-VETVDSIDIPENDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 269
>gi|148267214|ref|YP_001246157.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JH9]
gi|151220935|ref|YP_001331757.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|221141228|ref|ZP_03565721.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315812|ref|ZP_04839025.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253732798|ref|ZP_04866963.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TCH130]
gi|258418241|ref|ZP_05682506.1| peptide chain release factor 2 [Staphylococcus aureus A9763]
gi|258430733|ref|ZP_05688445.1| peptide chain release factor 2 [Staphylococcus aureus A9299]
gi|258440954|ref|ZP_05690789.1| peptide chain release factor 2 [Staphylococcus aureus A8115]
gi|258445784|ref|ZP_05693961.1| peptide chain release factor 2 [Staphylococcus aureus A6300]
gi|258449595|ref|ZP_05697697.1| peptide chain release factor 2 [Staphylococcus aureus A6224]
gi|258452962|ref|ZP_05700956.1| peptide chain release factor 2 [Staphylococcus aureus A5948]
gi|258453995|ref|ZP_05701967.1| peptide chain release factor 2 [Staphylococcus aureus A5937]
gi|269202375|ref|YP_003281644.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED98]
gi|282895050|ref|ZP_06303271.1| peptide chain release factor 2 [Staphylococcus aureus A8117]
gi|282916096|ref|ZP_06323859.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
D139]
gi|282922051|ref|ZP_06329748.1| peptide chain release factor 2 [Staphylococcus aureus A9765]
gi|282926620|ref|ZP_06334250.1| peptide chain release factor 2 [Staphylococcus aureus A10102]
gi|283769917|ref|ZP_06342809.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
H19]
gi|297208519|ref|ZP_06924948.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300912611|ref|ZP_07130054.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381625|ref|ZP_07364275.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014042|ref|YP_005290278.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VC40]
gi|384549614|ref|YP_005738866.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384861422|ref|YP_005744142.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|386728520|ref|YP_006194903.1| peptide chain release factor 2 (RF-2) [Staphylococcus aureus subsp.
aureus 71193]
gi|404478154|ref|YP_006709584.1| peptide chain release factor 2 [Staphylococcus aureus 08BA02176]
gi|415689250|ref|ZP_11452649.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS01]
gi|415693279|ref|ZP_11455112.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS03]
gi|416842496|ref|ZP_11905045.1| peptide chain release factor 2 [Staphylococcus aureus O11]
gi|417650425|ref|ZP_12300196.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21189]
gi|417652465|ref|ZP_12302212.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21172]
gi|417655111|ref|ZP_12304825.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21193]
gi|417802439|ref|ZP_12449497.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21318]
gi|417890507|ref|ZP_12534580.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21200]
gi|417892399|ref|ZP_12536449.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21201]
gi|417900179|ref|ZP_12544074.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21259]
gi|418979251|ref|ZP_13527048.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Staphylococcus
aureus subsp. aureus DR10]
gi|422746643|ref|ZP_16800574.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|147740283|gb|ABQ48581.1| bacterial peptide chain release factor 2 (bRF-2) [Staphylococcus
aureus subsp. aureus JH9]
gi|150373735|dbj|BAF66995.1| peptide chain release factor 2, programmed frameshift
[Staphylococcus aureus subsp. aureus str. Newman]
gi|253729163|gb|EES97892.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TCH130]
gi|257839034|gb|EEV63513.1| peptide chain release factor 2 [Staphylococcus aureus A9763]
gi|257849405|gb|EEV73375.1| peptide chain release factor 2 [Staphylococcus aureus A9299]
gi|257852468|gb|EEV76389.1| peptide chain release factor 2 [Staphylococcus aureus A8115]
gi|257855360|gb|EEV78298.1| peptide chain release factor 2 [Staphylococcus aureus A6300]
gi|257857103|gb|EEV80002.1| peptide chain release factor 2 [Staphylococcus aureus A6224]
gi|257859473|gb|EEV82327.1| peptide chain release factor 2 [Staphylococcus aureus A5948]
gi|257863860|gb|EEV86616.1| peptide chain release factor 2 [Staphylococcus aureus A5937]
gi|262074665|gb|ACY10638.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED98]
gi|282320044|gb|EFB50391.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
D139]
gi|282591513|gb|EFB96585.1| peptide chain release factor 2 [Staphylococcus aureus A10102]
gi|282593709|gb|EFB98701.1| peptide chain release factor 2 [Staphylococcus aureus A9765]
gi|282762546|gb|EFC02685.1| peptide chain release factor 2 [Staphylococcus aureus A8117]
gi|283460064|gb|EFC07154.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
H19]
gi|296886774|gb|EFH25678.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300886857|gb|EFK82059.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH70]
gi|302332463|gb|ADL22656.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302750651|gb|ADL64828.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304339988|gb|EFM05932.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315129439|gb|EFT85432.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS03]
gi|315196430|gb|EFU26781.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS01]
gi|320139911|gb|EFW31772.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|323438713|gb|EGA96454.1| peptide chain release factor 2 [Staphylococcus aureus O11]
gi|329723780|gb|EGG60308.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21189]
gi|329724575|gb|EGG61082.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21172]
gi|329729572|gb|EGG65973.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21193]
gi|334274439|gb|EGL92757.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21318]
gi|341842951|gb|EGS84184.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21259]
gi|341854642|gb|EGS95508.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21200]
gi|341857861|gb|EGS98671.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21201]
gi|374362739|gb|AEZ36844.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VC40]
gi|379992930|gb|EIA14379.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Staphylococcus
aureus subsp. aureus DR10]
gi|384229813|gb|AFH69060.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Staphylococcus
aureus subsp. aureus 71193]
gi|404439643|gb|AFR72836.1| peptide chain release factor 2 [Staphylococcus aureus 08BA02176]
gi|408423142|emb|CCJ10553.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408425132|emb|CCJ12519.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408427120|emb|CCJ14483.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408429107|emb|CCJ26272.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408431095|emb|CCJ18410.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408433089|emb|CCJ20374.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408435080|emb|CCJ22340.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
gi|408437065|emb|CCJ24308.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST228]
Length = 331
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|254386617|ref|ZP_05001914.1| peptide chain release factor 2 [Streptomyces sp. Mg1]
gi|194345459|gb|EDX26425.1| peptide chain release factor 2 [Streptomyces sp. Mg1]
Length = 369
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ +LA+ E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLAVLFELAQ-EMDDADTLAEAENEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G A V I+A + G+ +AE+L MY+RWA++ GY
Sbjct: 103 TSVRKALDEMEVRTLLSGEYAEREALVNIRAEAGGVDASDFAERLQRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E+S ++I + +L ++ + G+ + A I H+PTGI V
Sbjct: 223 PV-VESSDHVEIDEGELRIDVYRASGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|418283228|ref|ZP_12895982.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21202]
gi|365168015|gb|EHM59374.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21202]
Length = 330
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|258421538|ref|ZP_05684463.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9719]
gi|258423403|ref|ZP_05686294.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9635]
gi|257842464|gb|EEV66888.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9719]
gi|257846464|gb|EEV70487.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus A9635]
Length = 352
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 22 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 80
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 81 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 140
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 141 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 200
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 201 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 255
>gi|12323033|gb|AAG51510.1|AC058785_13 peptide chain release factor 2, putative [Arabidopsis thaliana]
Length = 426
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDPT + ++ + + + + E + +LA+ E D L +A
Sbjct: 97 DLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKEEN-DSELESETLKAL 155
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+D+ ++ + E+ LL ND + ++AG+ G WA ++ MY WA + +
Sbjct: 156 IDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSV 215
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ EYA+GY E G H L+ F +G H + A V V
Sbjct: 216 TVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 274
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+P+ + S ++I+D DL F S G+ + A I HIPTGI
Sbjct: 275 IPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGI 323
>gi|49485626|ref|YP_042847.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650094|ref|YP_185692.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
COL]
gi|150393263|ref|YP_001315938.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
JH1]
gi|387142448|ref|YP_005730841.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TW20]
gi|56749392|sp|Q6GB76.1|RF2_STAAS RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|56749443|sp|Q7A6R4.2|RF2_STAAN RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|56749454|sp|Q99VM1.2|RF2_STAAM RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|71153100|sp|Q5HHR5.1|RF2_STAAC RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|115311853|sp|Q2YSH5.2|RF2_STAAB RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|189040005|sp|A6TZN3.1|RF2_STAA2 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|49244069|emb|CAG42495.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284280|gb|AAW36374.1| peptide chain release factor 2, programmed frameshift
[Staphylococcus aureus subsp. aureus COL]
gi|149945715|gb|ABR51651.1| hypothetical protein SaurJH1_0795 [Staphylococcus aureus subsp.
aureus JH1]
gi|269940331|emb|CBI48708.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
TW20]
Length = 369
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>gi|377562090|ref|ZP_09791505.1| peptide chain release factor 2 [Gordonia otitidis NBRC 100426]
gi|377520760|dbj|GAB36670.1| peptide chain release factor 2 [Gordonia otitidis NBRC 100426]
Length = 371
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 12/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA---- 61
+LW+D + +V +L+ + + + +LR + ++ + +LAE E + A
Sbjct: 43 DLWNDQEHAQKVTSELSHAQSELRRVTELRQRLDDMPVHYELAESEEGEARTSALADADD 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RASL + E+ +L G D A V I++G+ G+ WA+ L+ MYVRWA+K
Sbjct: 103 ERASLRAD--IQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYVRWAEKH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 161 GYGVEVYDTSYAEEAGLKSATFAVKSPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 221 VEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|430760730|ref|YP_007216587.1| Peptide chain release factor 2; programmed frameshift-containing
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430010354|gb|AGA33106.1| Peptide chain release factor 2; programmed frameshift-containing
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 328
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 126/231 (54%), Gaps = 11/231 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+DP ++ + + A +V ++++ + ++++ + +LAE A D A L
Sbjct: 9 VWNDPERAQALGRERAQLEAIVLNIREIEAQLDDSRDLLELAE--ADDDPSTVDAVATDL 66
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D +++ ++ E ++ G D A + I+AGS G + WAE LL MY+RWA++ G++
Sbjct: 67 DQLNRRVEDLEFRRMFSGEMDSANAFLDIQAGSGGTEAQDWAEMLLRMYLRWAERRGFKT 126
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSAT++F+ EYAFG+L E G H L+ + +G+ H + A V V
Sbjct: 127 EIIELSEGDVAGIKSATVKFDGEYAFGWLRTEIGVHRLVRKSPYDSGNRRH-TSFAAVFV 185
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ S +++I+ DL + + G+ + + A I H+P+G+ V
Sbjct: 186 SPE-VDDSFEIEINPADLKVDTYRASGAGGQHVNRTESAIRITHMPSGVVV 235
>gi|350560872|ref|ZP_08929711.1| peptide chain release factor 2 [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780979|gb|EGZ35287.1| peptide chain release factor 2 [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 329
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 124/231 (53%), Gaps = 11/231 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+DP ++ + + A VV ++++ + ++ + +LAE A D A L
Sbjct: 10 IWNDPERAQALGRERAQLEAVVLNIREIEAQLSDSHDLLELAE--ADDDTSTVDAVATDL 67
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +++ +++ E ++ G D A + I+AGS G + WAE LL MY+RW ++ G+R
Sbjct: 68 EQLNRRVEELEFRRMFSGEMDSANAFLDIQAGSGGTEAQDWAEMLLRMYLRWGERRGFRT 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSAT++F+ EYAFG+L E G H L+ + +G+ H + A V V
Sbjct: 128 EIIELSEGDVAGIKSATVKFDGEYAFGWLRTEIGVHRLVRKSPYDSGNRRH-TSFAAVFV 186
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ S +++I+ DL + + G+ + + A I H+P+GI V
Sbjct: 187 SP-EIDDSIEIEINPADLKVDTYRASGAGGQHVNRTESAIRITHMPSGIVV 236
>gi|297568438|ref|YP_003689782.1| hypothetical protein DaAHT2_0457 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924353|gb|ADH85163.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2]
Length = 368
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 9/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+P + V + +D ++ + + E+A+++ +LA E D+ + RA
Sbjct: 47 NFWDNPEAAAGVQKEQSDLQDTIDNWQQVIDSFEDAEVLLELAIAEN-DHETEQEVSRAL 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V + L E+ + G +D A +TI AG+ G + W + LL MY+RWA+K+G+
Sbjct: 106 NSVEQRLAAMELECMFNGEHDASNAMLTIHAGAGGTEAQDWTDILLRMYLRWAEKKGFST 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++D G KS T+ + +A+GYL E G H L+ F G H + A V +
Sbjct: 166 EILDHLPGDEAGTKSVTVLVKGRWAYGYLRSEMGIHRLVRISPFDTGGRRH-TSFASVFI 224
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ + +++I+D+DL + + G+ + A I H+P+GI V+
Sbjct: 225 FP-ELDDNIEVEINDKDLRIDTYRASGAGGQHVNKTSSAIRITHLPSGIVVQ 275
>gi|149183327|ref|ZP_01861766.1| peptide chain release factor 2 [Bacillus sp. SG-1]
gi|148848954|gb|EDL63165.1| peptide chain release factor 2 [Bacillus sp. SG-1]
Length = 327
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ V+ + ++VN KD++ E ++ +L + E D L + +
Sbjct: 5 DFWNDQQQAQGVINEANGLKELVNEYKDMQEMQENLEVTLELVKEEN-DAELQEELVEET 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D++K L++YE+ LL P+D A + + G+ G + W LL MY RWA+K+G++
Sbjct: 64 KDLNKRLNEYELQLLLSEPHDKNNAILELHPGAGGTESQDWGSMLLRMYQRWAEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D G+KS T+ + A+GYL E G H L+ F + H + ++C +V
Sbjct: 124 ETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-EV 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P F E ++ I EDL + + G+ + A I H PTG+ V
Sbjct: 183 MPEFNE-EIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHQPTGVVV 232
>gi|42562784|ref|NP_176032.2| Peptide chain release factor 2 [Arabidopsis thaliana]
gi|332195261|gb|AEE33382.1| Peptide chain release factor 2 [Arabidopsis thaliana]
Length = 482
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDPT + ++ + + + + E + +LA+ E D L +A
Sbjct: 153 DLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKEEN-DSELESETLKAL 211
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+D+ ++ + E+ LL ND + ++AG+ G WA ++ MY WA + +
Sbjct: 212 IDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSV 271
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ EYA+GY E G H L+ F +G H + A V V
Sbjct: 272 TVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 330
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+P+ + S ++I+D DL F S G+ + A I HIPTGI
Sbjct: 331 IPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGI 379
>gi|403724386|ref|ZP_10946024.1| peptide chain release factor 2 [Gordonia rhizosphera NBRC 16068]
gi|403205596|dbj|GAB90355.1| peptide chain release factor 2 [Gordonia rhizosphera NBRC 16068]
Length = 371
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + V +L+ + + + +LR + ++ + +LAE E G + A A
Sbjct: 43 DLWNDQEHAQRVTSELSHAQSELRRVSELRQRLDDLPVHYELAEAEE---GEDRTAALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+K
Sbjct: 100 ADGERASLRADVEAMEVKTMLAGEYDPRDALVNIRSGAGGVDAADWAQMLMRMYIRWAEK 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
Y V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 160 HNYSVEVYDTSYAEEAGIKSATFAIKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I++ DL ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIDIAETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|345863106|ref|ZP_08815319.1| peptide chain release factor 2 [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345877278|ref|ZP_08829030.1| peptide chain release factor 2, programmed frameshift [endosymbiont
of Riftia pachyptila (vent Ph05)]
gi|344225666|gb|EGV52017.1| peptide chain release factor 2, programmed frameshift [endosymbiont
of Riftia pachyptila (vent Ph05)]
gi|345125989|gb|EGW55856.1| peptide chain release factor 2 [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 348
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W D ++ + + A VV + L +A + ++A EA D L A A L
Sbjct: 29 VWSDQARAQALGRERASLEAVVETIDALDVGLADAVDLLEMAVEEADDEAL--DAVVADL 86
Query: 67 DV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + + + E ++ G D A + I+AGS G + WAE LL MY+RW + G++
Sbjct: 87 DAFEQRIAELEFRRMFSGEMDPSNAFLDIQAGSGGTEAQDWAEMLLRMYLRWGEAHGFKT 146
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ + G+KSATI FE EYAFG+L ETG H L+ F +G+ H + + V V
Sbjct: 147 ELMEASPGEVAGIKSATIRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFSAVFV 205
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ S +++I+ DL ++ + G+ + + A I H PTGI V+
Sbjct: 206 SPE-IDDSIEIEINPADLRIDVYRASGAGGQHVNRTESAVRITHNPTGIVVQ 256
>gi|259419215|ref|ZP_05743132.1| peptide chain release factor 2 [Silicibacter sp. TrichCH4B]
gi|259345437|gb|EEW57291.1| peptide chain release factor 2 [Silicibacter sp. TrichCH4B]
Length = 374
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
V + NLWDDP + +++ + ++ K +R +++ + +L EME D + K A
Sbjct: 39 VEDPNLWDDPAAAQKLMRDRQSLVDAIDTYKGIRQDLDDSVELIELGEMEEDDE-VVKDA 97
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
+ + Q E+ LL G D A + IKAG+ G WA L MYVRWA+
Sbjct: 98 EETLKALKEKAAQKELEALLDGETDPNDAFLEIKAGAGGTEACDWASMLARMYVRWAESR 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLACV 180
G+ + ++ G+KSAT + + A+G+L E+G H L+ P G E + A V
Sbjct: 158 GFSVDLQEEQAGAEAGIKSATYQIKGHNAYGWLKSESGTHRLVRISPFGKGTRETSFAAV 217
Query: 181 DVVPLF-----LETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E +P D++I + S G+ + A I H PTGI V
Sbjct: 218 GAYPVIDDNIEIEVNPADIRID----TYRSSGAGGQHVNTTDSAVRITHEPTGIVV 269
>gi|89094633|ref|ZP_01167570.1| peptide chain release factor 2, programmed frameshift
[Neptuniibacter caesariensis]
gi|89081103|gb|EAR60338.1| peptide chain release factor 2, programmed frameshift
[Neptuniibacter caesariensis]
Length = 364
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 15/234 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+WDDP + ++ + + VV + DL + + + +A E + + +
Sbjct: 45 VWDDPENAQKLGKERSTLEAVVGTIDDLTAGVADTRDLLDMAVEEDDEDTVAE----VES 100
Query: 67 DVSKLLD---QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
DV+ +LD Q E ++ G D A + I+AGS G + WAE +L MY+RW + +G+
Sbjct: 101 DVTAMLDRLQQLEFRRMFAGEADPNNAFLDIQAGSGGTEAQDWAEMMLRMYLRWGEDKGF 160
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +++ G+KSATI F+ EYAFG+L ETG H L+ F +G H + + V
Sbjct: 161 KTELLECSAGDVAGIKSATISFQGEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSV 219
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + D++I+ DL ++ + G+ + + A I H P+GI V+
Sbjct: 220 FVSPE-IDDNIDIEINPADLRVDVYRASGAGGQHVNRTESAVRITHEPSGIVVQ 272
>gi|99080709|ref|YP_612863.1| peptide chain release factor 2 [Ruegeria sp. TM1040]
gi|122984362|sp|Q1GIB5.1|RF2_SILST RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|99036989|gb|ABF63601.1| bacterial peptide chain release factor 2 (bRF-2) [Ruegeria sp.
TM1040]
Length = 374
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
V + NLWDDP + +++ + ++ K +R +++ + +L EME D + K A
Sbjct: 39 VEDPNLWDDPAAAQKLMRDRQSLVDAMDTYKSIRQDLQDSVELIELGEMEE-DAEVVKDA 97
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
+ + Q E+ LL G D A + IKAG+ G WA L MYVRWA+
Sbjct: 98 EDTLKALKEKAAQKELEALLDGETDPNDAFLEIKAGAGGTEACDWASMLARMYVRWAESR 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLACV 180
G+ + ++ G+KSAT + + A+G+L E+G H L+ P G E + A V
Sbjct: 158 GFSVELQEEQAGAEAGIKSATYQIKGHNAYGWLKSESGTHRLVRISPFGKGTRETSFAAV 217
Query: 181 DVVPLF-----LETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E +P D++I + S G+ + A I H PTGI V
Sbjct: 218 GAYPVIDDNIEIEVNPADIRID----TYRSSGAGGQHVNTTDSAVRITHEPTGIVV 269
>gi|433646380|ref|YP_007291382.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
smegmatis JS623]
gi|433296157|gb|AGB21977.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium
smegmatis JS623]
Length = 368
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V +L+ + + +++LR + ++ ++ +LA E + A
Sbjct: 43 NLWDDQTRAQKVTSELSHTQGELRRVEELRQRLDDLPVMYELAAEEGG----AEEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ KL ++ E+ LL G D A V I++G+ G+ WAE L+ MY+RWA+
Sbjct: 99 AELRKLREDIEAMEVRTLLSGEYDAREALVNIRSGAGGVDAADWAEMLMRMYIRWAEAHK 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 159 YSVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 EVLPV-TETTDHIDIPESDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>gi|417749179|ref|ZP_12397585.1| peptide chain release factor 2 [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459371|gb|EGO38314.1| peptide chain release factor 2 [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 370
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 21/238 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK------ 59
LWDD ++ V +L+ + + +++LR + ++ ++ +LA +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEDGEGAAEALAEADAE 102
Query: 60 -RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 272
>gi|371776696|ref|ZP_09483018.1| hypothetical protein AnHS1_04750 [Anaerophaga sp. HS1]
Length = 316
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Query: 28 VNALKDLRYKAEEAKLIAQ-LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPND 86
V+A ++++ EE ++ + L E EA + + K+ Y ++ KL++ E+ +LR D
Sbjct: 11 VSAYEEIKNAIEETSVLLEFLKEGEADESDVMKQ-YETAV---KLVENLELRNMLRKEED 66
Query: 87 VEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFE 146
GA + I AG+ G + WAE L+ MY+RW ++ GY+ + G+K+ T++FE
Sbjct: 67 KLGAILKINAGAGGTESQDWAEMLMRMYIRWGERHGYKITETNFLEGDEAGIKTVTLQFE 126
Query: 147 FEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---L 201
+YA+GYL E G H L+ N + + V V+PL ++ + +++I+ D+
Sbjct: 127 GDYAYGYLKSENGVHRLVRLSPFNAANKRMTSFTSVFVIPL-IDDTIEVEINPADITWET 185
Query: 202 FSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
F S G+ + + ++H PTGI + T
Sbjct: 186 FRSSGAGGQNVNKVETGVRLRHAPTGIVIENT 217
>gi|326771885|ref|ZP_08231170.1| peptide chain release factor 2 [Actinomyces viscosus C505]
gi|326638018|gb|EGE38919.1| peptide chain release factor 2 [Actinomyces viscosus C505]
Length = 373
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V L+ + + ++ L + E+ + + +LA E + A A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGEDAAEILA-EAE 101
Query: 66 LD---VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+D +SK L E+ LL G D A +TI++G+ G+ +AE LL MY RWA++
Sbjct: 102 MDLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADFAEMLLRMYTRWAERHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V++ + G+KS T E YA+G LS E G H L+ + + + A V
Sbjct: 162 YPVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 222 EVIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 273
>gi|257424874|ref|ZP_05601301.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427542|ref|ZP_05603941.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430173|ref|ZP_05606557.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
68-397]
gi|257432874|ref|ZP_05609234.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
E1410]
gi|257435778|ref|ZP_05611826.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M876]
gi|282913594|ref|ZP_06321383.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M899]
gi|282918547|ref|ZP_06326284.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C427]
gi|282923513|ref|ZP_06331193.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C101]
gi|283957586|ref|ZP_06375039.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293500640|ref|ZP_06666491.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
58-424]
gi|293509587|ref|ZP_06668298.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M809]
gi|293524173|ref|ZP_06670860.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M1015]
gi|297590314|ref|ZP_06948953.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus MN8]
gi|384868314|ref|YP_005748510.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH60]
gi|417887266|ref|ZP_12531399.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21195]
gi|257272444|gb|EEV04567.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275735|gb|EEV07208.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279370|gb|EEV09971.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
68-397]
gi|257282289|gb|EEV12424.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
E1410]
gi|257284969|gb|EEV15088.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M876]
gi|282314381|gb|EFB44771.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C101]
gi|282317681|gb|EFB48053.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C427]
gi|282322626|gb|EFB52948.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M899]
gi|283791037|gb|EFC29852.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290921136|gb|EFD98197.1| peptide chain release factor 2, programmed [Staphylococcus aureus
subsp. aureus M1015]
gi|291095645|gb|EFE25906.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
58-424]
gi|291467684|gb|EFF10199.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M809]
gi|297576613|gb|EFH95328.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus MN8]
gi|312438819|gb|ADQ77890.1| peptide chain release factor RF2 [Staphylococcus aureus subsp.
aureus TCH60]
gi|341858319|gb|EGS99116.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21195]
Length = 331
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|41409273|ref|NP_962109.1| peptide chain release factor 2 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398093|gb|AAS05723.1| PrfB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 373
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 21/238 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK------ 59
LWDD ++ V +L+ + + +++LR + ++ ++ +LA +
Sbjct: 46 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEDGEGAAEALAEADAE 105
Query: 60 -RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 106 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 159
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 160 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQT 218
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 275
>gi|316934390|ref|YP_004109372.1| peptide chain release factor 2 [Rhodopseudomonas palustris DX-1]
gi|315602104|gb|ADU44639.1| peptide chain release factor 2 [Rhodopseudomonas palustris DX-1]
Length = 376
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
NLW+DP K+ +++ L D+L + ++ R + +I +L E E D G+ K A
Sbjct: 43 NLWNDPQKAQKLMQERTSLEDALTGIGKVE--RELTDNIDMI-ELGEAEG-DEGIVKEAE 98
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A + K + + E+ LL G D + + AG+ G + WA LL MYVRWA+K G
Sbjct: 99 EALKALKKEVARRELEALLSGEADRFDTYLEVHAGAGGTESQDWASMLLRMYVRWAEKHG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +++ + G+KSATI+ A+G+L E G H L+ F + + H + +
Sbjct: 159 FKIEYLEESDGEEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRH-TSFSS 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V + P+ ++ S + I + D+ S G+ + + A + HIPTG+AV
Sbjct: 218 VQIFPV-IDDSIKIDIKESDVRTDTMRSGGAGGQHVNKTESAVRLTHIPTGVAV 270
>gi|398800080|ref|ZP_10559356.1| peptide chain release factor 2 [Pantoea sp. GM01]
gi|398096284|gb|EJL86609.1| peptide chain release factor 2 [Pantoea sp. GM01]
Length = 351
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ + + A VV L +R E+ + + LA +EA D F A A
Sbjct: 31 DVWNEPERAQALGKERASLEAVVETLDHMRQGLEDVQGLLDLA-VEADDEETFNEAV-AE 88
Query: 66 LDVSKL-LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD ++ L + E ++ G D + I+AGS G + WA LL MY+RWA+ +GY+
Sbjct: 89 LDALEVKLGELEFRRMFSGEYDSADCYMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGYK 148
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++++ + G KSATI+ +YAFG+L ETG H L+ F +G H + + V
Sbjct: 149 TEIIEESDGEVAGTKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSVF 207
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P ++ + D+ I+ DL ++ + G+ + + A I H+PT I V+
Sbjct: 208 IYPE-VDDNIDIDINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQ 259
>gi|357038237|ref|ZP_09100035.1| Peptide chain release factor 2 [Desulfotomaculum gibsoniae DSM
7213]
gi|355359812|gb|EHG07572.1| Peptide chain release factor 2 [Desulfotomaculum gibsoniae DSM
7213]
Length = 329
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++ +++ EV + + + + A +L E+ +++ L E E D L A A
Sbjct: 6 FWEEQSRAQEVTQTVTNLKERITAFSELYGAMEDLEVLIDLGEEEN-DDSLADEAEAALA 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++ + EM +L GP D A V + AG+ G + W LL M+ RWA+ G+R
Sbjct: 65 QLNRRVAGLEMQVMLSGPYDAGNAIVAMHAGAGGTEAQDWVAMLLRMFTRWAENRGFRVN 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D GVKS T AFGYL E G H L+ + + + A VDV+P
Sbjct: 125 IMDMLPGDEAGVKSVTFSVAGHNAFGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDVLP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ D+QI EDL + S G+ + A I H+PTGI V+
Sbjct: 185 E-VQDDIDVQIDPEDLKIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQ 233
>gi|354603174|ref|ZP_09021173.1| peptide chain release factor 2 [Alistipes indistinctus YIT 12060]
gi|353349051|gb|EHB93317.1| peptide chain release factor 2 [Alistipes indistinctus YIT 12060]
Length = 360
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQL--------AEMEAIDYGL 57
+ WDDP K+ E L K+A + A + EE L+ + E++A YG
Sbjct: 41 DFWDDPAKAEEQLKKVAGIKYWITAYDAIASAMEELHLLPEFIREGVSAPEELDA-QYGR 99
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
V ++++ EM +L G D GA + I +G+ G WA L+ MY+RW
Sbjct: 100 ----------VLEMIEALEMRNMLGGEEDRLGAIMEINSGAGGTESLDWASMLMRMYMRW 149
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
+ GY+ +VVD + G+KSAT+EF E+A+GYL E+G H L+ N + +
Sbjct: 150 GEANGYQVKVVDVQDGEEVGIKSATLEFVGEFAYGYLKSESGVHRLVRPSPFNANNKRQT 209
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRG 232
T A V V P ++ + ++ I+ D+ + S G+ + + ++H+P+GI V
Sbjct: 210 TFASVFVSPA-VDDTIEITINPADIEWDTYRSGGKGGQNVNKVETGVRLRHLPSGIMVEN 268
Query: 233 T 233
T
Sbjct: 269 T 269
>gi|340359594|ref|ZP_08682074.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 448
str. F0400]
gi|339884348|gb|EGQ74144.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 448
str. F0400]
Length = 373
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V L+ + + ++D+ + ++ + + ++A E+ + A A
Sbjct: 43 DLWDDPDAAQAVTSALSHAQADLKRVEDMGGRIDDLEAMVEMAGEESGEDAEELLAEAAL 102
Query: 66 LDVS--KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
VS + L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLVSICEDLGDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + + + D+ +F S G+ + A I HIPTG+ V
Sbjct: 223 VIPL-IESTDHIDVPETDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGLVV 273
>gi|307718929|ref|YP_003874461.1| peptide chain release factor 2 [Spirochaeta thermophila DSM 6192]
gi|306532654|gb|ADN02188.1| peptide chain release factor 2 [Spirochaeta thermophila DSM 6192]
Length = 361
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 121/249 (48%), Gaps = 44/249 (17%)
Query: 6 NLWDDPTKSNEVLVKLADSLKV--------------VNALKDLRYK----AEEAKLIAQL 47
+LW+D + EVL +L LKV ++ L DL + ++E +L QL
Sbjct: 32 DLWNDRKHAEEVLSRLR-RLKVRYEGWASLVQEVEDIHTLYDLAAEENDPSQEEELRQQL 90
Query: 48 AEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWA 107
AE E R +R + + +LL D + A +TI AG+ G+ WA
Sbjct: 91 AEAE--------RKFR----------ELRLRELLNEEYDQKDAYLTIHAGAGGMEACDWA 132
Query: 108 EQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167
LL MY+RW +++G+ ++VD GG+KS T+E + +YAFGYL GE G H L+
Sbjct: 133 SMLLRMYLRWLERKGFSTQIVD-MVEDEGGIKSVTVEVKGDYAFGYLKGEAGVHRLVRIS 191
Query: 168 --NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQ 222
+ S + A V V P+ +E ++ I EDL + S G+ + + A I
Sbjct: 192 PFDASGRRHTSFASVYVSPI-IEDDIEVDIRPEDLRIDTYRSQGAGGQHVNKTESAVRIT 250
Query: 223 HIPTGIAVR 231
H+PTGI V+
Sbjct: 251 HLPTGIVVQ 259
>gi|251799706|ref|YP_003014437.1| hypothetical protein Pjdr2_5745 [Paenibacillus sp. JDR-2]
gi|247547332|gb|ACT04351.1| hypothetical protein Pjdr2_5745 [Paenibacillus sp. JDR-2]
Length = 368
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD TK+ ++ +L VV + L E+ + + +LA+ E+ D L
Sbjct: 44 DFWDDNTKAQGIISELNAIKSVVEHYERLNADCEDLQTLIELADEESDD-SLEAEVIGGI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ +E+ LL P D A + + G+ G + WA+ L MY RWA+K G++
Sbjct: 103 ASLNEKVNGFELQLLLNQPYDKLNAILELHPGAGGTESQDWAQMLYRMYTRWAEKRGFKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D G+KS TI + A+GYL E G H L+ F + H + ++C DV
Sbjct: 163 EVLDYLDGDEAGIKSVTIAVKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VP E +++I EDL + + G+ + + A I HIPTGI V
Sbjct: 222 VPEITE-DIEVEIRTEDLKVDTYRASGAGGQHVNKTESAIRITHIPTGIVV 271
>gi|282903384|ref|ZP_06311275.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C160]
gi|282596339|gb|EFC01300.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
C160]
Length = 331
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|374301042|ref|YP_005052681.1| peptide chain release factor 2 [Desulfovibrio africanus str. Walvis
Bay]
gi|332553978|gb|EGJ51022.1| peptide chain release factor 2 [Desulfovibrio africanus str. Walvis
Bay]
Length = 368
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 15/233 (6%)
Query: 8 WDDPTKSNEVLV---KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
WD P + +L ++++ L+ + L R + EE +A+ + + + L ++
Sbjct: 47 WDKPDRLTPMLQEKRQISEKLERLTVLHKTRQEVEEWLDLAREDQTQEVLAILSEQ---- 102
Query: 65 SLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LDV + L E+ ++L GP D A + I +G+ G + WAE LL MY RW++++GY
Sbjct: 103 -LDVLQERLKDVELREMLAGPEDQNSAIMEIHSGAGGTEAQDWAEMLLRMYRRWSERQGY 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+ ++D + G KS T++ E YA+G L GE+G H LI + S + A V
Sbjct: 162 KVSILDFLEGEEAGFKSVTVQVEGLYAYGMLKGESGIHRLIRISPFDTSGRRHTSFASVA 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P + T D+ + +EDL +F + G+ + + A I H+PTG+ +
Sbjct: 222 VYP-DVGTDIDIDVREEDLRIDVFRASGAGGQHVNKTESAVRITHLPTGVVAQ 273
>gi|262049538|ref|ZP_06022408.1| peptide chain release factor 2 [Staphylococcus aureus D30]
gi|259162374|gb|EEW46946.1| peptide chain release factor 2 [Staphylococcus aureus D30]
Length = 330
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEYLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|282908140|ref|ZP_06315971.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910399|ref|ZP_06318203.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282325791|gb|EFB56099.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327805|gb|EFB58087.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus
aureus subsp. aureus WW2703/97]
Length = 352
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 22 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 80
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 81 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 140
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 141 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 200
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 201 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 255
>gi|404330086|ref|ZP_10970534.1| peptide chain release factor 2 [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 325
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +V+ + + + V+ L L K E+ ++ +L + E D K ASL
Sbjct: 4 FWDDNGKAQKVIDESNELKEKVDNLGKLEEKFEDLQVAYELVKEE--DDADLKTELEASL 61
Query: 67 -DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ SK ++YE LL GP+D A + + G+ G + WA LL MY RWA+ GY+
Sbjct: 62 GEASKAFNRYENRLLLSGPHDKSNAILELHPGAGGTEAQDWASMLLRMYTRWAESHGYQV 121
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D GVKS T+ + A+GYL E G H L+ F H + ++C +V
Sbjct: 122 ETLDYLPGDEAGVKSVTLLIKGLDAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EV 180
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + D+++ ED+ +F S G+ + A + HIPTGI V
Sbjct: 181 TPE-IDDTIDIEVRPEDVKMEVFRSSGAGGQHINKTSSAVRLIHIPTGIVV 230
>gi|386266089|ref|YP_005829581.1| Peptide chain release factor 2 (RF-2) [Haemophilus influenzae
R2846]
gi|309973325|gb|ADO96526.1| Peptide chain release factor 2 (RF-2) [Haemophilus influenzae
R2846]
Length = 365
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP K+ + + +VVN +K+L E+ + +LA +EA D F A
Sbjct: 45 DVWNDPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA-IEAEDEDTFNEAVAEL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L++ E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 104 DELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI+ EYAFG+L ETG H L+ F + + H + + V
Sbjct: 164 ELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFSAAFV 222
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 223 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 273
>gi|15923744|ref|NP_371278.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926431|ref|NP_373964.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
N315]
gi|82750458|ref|YP_416199.1| peptide chain release factor 2 [Staphylococcus aureus RF122]
gi|156979082|ref|YP_001441341.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253731382|ref|ZP_04865547.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|255005545|ref|ZP_05144146.2| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794925|ref|ZP_05643904.1| peptide chain release factor 2 [Staphylococcus aureus A9781]
gi|262052329|ref|ZP_06024532.1| peptide chain release factor 2 [Staphylococcus aureus 930918-3]
gi|296275163|ref|ZP_06857670.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MR1]
gi|379020525|ref|YP_005297187.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M013]
gi|384547036|ref|YP_005736289.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED133]
gi|384864079|ref|YP_005749438.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384869340|ref|YP_005752054.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
T0131]
gi|385781080|ref|YP_005757251.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
11819-97]
gi|387149917|ref|YP_005741481.1| Peptide chain release factor 2 [Staphylococcus aureus 04-02981]
gi|387602109|ref|YP_005733630.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST398]
gi|418280783|ref|ZP_12893608.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21178]
gi|418285829|ref|ZP_12898496.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21209]
gi|418308216|ref|ZP_12919859.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21194]
gi|418309566|ref|ZP_12921120.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21331]
gi|418313637|ref|ZP_12925122.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21334]
gi|418315392|ref|ZP_12926856.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21340]
gi|418318355|ref|ZP_12929760.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21232]
gi|418322194|ref|ZP_12933531.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VCU006]
gi|418423897|ref|ZP_12997039.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418426874|ref|ZP_12999895.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418429804|ref|ZP_13002730.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418432700|ref|ZP_13005493.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436415|ref|ZP_13008225.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439312|ref|ZP_13011028.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442290|ref|ZP_13013902.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445418|ref|ZP_13016904.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448357|ref|ZP_13019757.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451178|ref|ZP_13022517.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454200|ref|ZP_13025468.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457104|ref|ZP_13028314.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418560578|ref|ZP_13125091.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21252]
gi|418569746|ref|ZP_13134060.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21283]
gi|418574180|ref|ZP_13138357.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21333]
gi|418578653|ref|ZP_13142748.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418600554|ref|ZP_13164010.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21343]
gi|418639427|ref|ZP_13201674.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-3]
gi|418640930|ref|ZP_13203146.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-24]
gi|418647137|ref|ZP_13209216.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651038|ref|ZP_13213049.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-91]
gi|418654275|ref|ZP_13216188.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-99]
gi|418659140|ref|ZP_13220830.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-111]
gi|418660976|ref|ZP_13222582.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-122]
gi|418872469|ref|ZP_13426808.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-125]
gi|418874775|ref|ZP_13429041.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418877599|ref|ZP_13431838.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418880458|ref|ZP_13434678.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418883384|ref|ZP_13437583.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418886046|ref|ZP_13440196.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418888652|ref|ZP_13442788.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418894210|ref|ZP_13448311.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418903029|ref|ZP_13457070.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418904873|ref|ZP_13458902.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418911431|ref|ZP_13465414.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG547]
gi|418913943|ref|ZP_13467915.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418919626|ref|ZP_13473569.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418924992|ref|ZP_13478895.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418928077|ref|ZP_13481963.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418930787|ref|ZP_13484635.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418933689|ref|ZP_13487513.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418948884|ref|ZP_13501164.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-157]
gi|418952399|ref|ZP_13504429.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-160]
gi|418952673|ref|ZP_13504689.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-189]
gi|418987657|ref|ZP_13535330.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418990644|ref|ZP_13538305.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418993467|ref|ZP_13541104.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG290]
gi|419775539|ref|ZP_14301478.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CO-23]
gi|419784550|ref|ZP_14310314.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-M]
gi|422744898|ref|ZP_16798853.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424775720|ref|ZP_18202711.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CM05]
gi|424784611|ref|ZP_18211421.1| Peptide chain release factor 2 [Staphylococcus aureus CN79]
gi|440706819|ref|ZP_20887541.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21282]
gi|440734234|ref|ZP_20913846.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|443637554|ref|ZP_21121630.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21236]
gi|448741992|ref|ZP_21723948.1| peptide chain release factor 2 [Staphylococcus aureus KT/314250]
gi|448744324|ref|ZP_21726218.1| peptide chain release factor 2 [Staphylococcus aureus KT/Y21]
gi|13700645|dbj|BAB41942.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
N315]
gi|14246523|dbj|BAB56916.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu50]
gi|82655989|emb|CAI80394.1| peptide chain release factor 2 [Staphylococcus aureus RF122]
gi|156721217|dbj|BAF77634.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253724907|gb|EES93636.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257788897|gb|EEV27237.1| peptide chain release factor 2 [Staphylococcus aureus A9781]
gi|259159769|gb|EEW44810.1| peptide chain release factor 2 [Staphylococcus aureus 930918-3]
gi|283470047|emb|CAQ49258.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ST398]
gi|285816456|gb|ADC36943.1| Peptide chain release factor 2 [Staphylococcus aureus 04-02981]
gi|298694086|gb|ADI97308.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ED133]
gi|312829246|emb|CBX34088.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|320141998|gb|EFW33826.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329313475|gb|AEB87888.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
T0131]
gi|359829834|gb|AEV77812.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
M013]
gi|364522069|gb|AEW64819.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365167354|gb|EHM58819.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21178]
gi|365169390|gb|EHM60643.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21209]
gi|365223803|gb|EHM65078.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VCU006]
gi|365235336|gb|EHM76255.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21334]
gi|365238899|gb|EHM79727.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21331]
gi|365240804|gb|EHM81567.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21194]
gi|365243224|gb|EHM83910.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21232]
gi|365244022|gb|EHM84690.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21340]
gi|371971642|gb|EHO89039.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21252]
gi|371980277|gb|EHO97491.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21333]
gi|371985352|gb|EHP02425.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21283]
gi|374393361|gb|EHQ64674.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21343]
gi|375016561|gb|EHS10200.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-99]
gi|375017453|gb|EHS11067.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-3]
gi|375020127|gb|EHS13668.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-24]
gi|375026850|gb|EHS20228.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-91]
gi|375030960|gb|EHS24255.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-88]
gi|375036385|gb|EHS29458.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-111]
gi|375039751|gb|EHS32669.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-122]
gi|375367219|gb|EHS71187.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-125]
gi|375368874|gb|EHS72772.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-160]
gi|375370391|gb|EHS74200.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-157]
gi|375376387|gb|EHS79922.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-189]
gi|377696307|gb|EHT20663.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696680|gb|EHT21035.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377698558|gb|EHT22906.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377716050|gb|EHT40235.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377716654|gb|EHT40836.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377719445|gb|EHT43615.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377722766|gb|EHT46891.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377724809|gb|EHT48924.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG547]
gi|377727344|gb|EHT51451.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377732896|gb|EHT56946.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377737989|gb|EHT61998.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377742044|gb|EHT66029.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377746287|gb|EHT70258.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377746626|gb|EHT70596.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG290]
gi|377754162|gb|EHT78071.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377757445|gb|EHT81333.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766413|gb|EHT90246.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377767151|gb|EHT90964.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377771469|gb|EHT95223.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|377772115|gb|EHT95868.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383363994|gb|EID41319.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-M]
gi|383970762|gb|EID86855.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CO-23]
gi|387720235|gb|EIK08148.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387720486|gb|EIK08396.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387722260|gb|EIK10085.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387726884|gb|EIK14424.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387729085|gb|EIK16551.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS5]
gi|387731393|gb|EIK18701.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS6]
gi|387737592|gb|EIK24657.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS8]
gi|387738825|gb|EIK25842.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS9]
gi|387739267|gb|EIK26275.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387746342|gb|EIK33074.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS10]
gi|387747174|gb|EIK33884.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387748704|gb|EIK35373.1| prfB- peptide chain release factor RF-2 [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402346795|gb|EJU81871.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CM05]
gi|421957210|gb|EKU09534.1| Peptide chain release factor 2 [Staphylococcus aureus CN79]
gi|436431262|gb|ELP28615.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436506693|gb|ELP42464.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21282]
gi|443405545|gb|ELS64147.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21236]
gi|445547384|gb|ELY15654.1| peptide chain release factor 2 [Staphylococcus aureus KT/314250]
gi|445562327|gb|ELY18503.1| peptide chain release factor 2 [Staphylococcus aureus KT/Y21]
Length = 330
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|417904612|ref|ZP_12548434.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21269]
gi|341846518|gb|EGS87710.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21269]
Length = 331
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKALQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|300114892|ref|YP_003761467.1| peptide chain release factor 2 [Nitrosococcus watsonii C-113]
gi|299540829|gb|ADJ29146.1| peptide chain release factor 2 [Nitrosococcus watsonii C-113]
Length = 331
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WD+P ++ ++ + A VV+ L +L + +AK + +LA +E D G + A
Sbjct: 11 SVWDEPERAQQLGQERAQLQSVVSPLAELGEEIMQAKELFELA-VEEDDEGTAQEMI-AE 68
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD V + L + E ++ G D A + I+AGS G + WA LL MY+RW +K ++
Sbjct: 69 LDAVEQRLAKLEFQRMFAGEMDPNNAYLDIQAGSGGTEAQDWASMLLRMYLRWGEKHDFK 128
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+ + + G+KSATI FE EYAFG+L ETG H L+ F +G+ H + A V
Sbjct: 129 TGLTEVSEGEVAGIKSATIHFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVF 187
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL + + G+ + A I H+ + + V+
Sbjct: 188 VYPE-VDERIDIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHLSSNLVVQ 239
>gi|436841995|ref|YP_007326373.1| Peptide chain release factor 2 [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432170901|emb|CCO24272.1| Peptide chain release factor 2 [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 311
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 10/171 (5%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
++KL++Q E++ LL GP D A + I G+ GI + WAE LL MY+RW DK ++
Sbjct: 45 LAKLVEQTELATLLSGPEDKSTAILEIHPGAGGIESQDWAEMLLRMYLRWCDKRNWKTSY 104
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+D G+KS T+ + YA+G+L GE G H LI + S + A VDV P
Sbjct: 105 LDYQPDDEAGIKSVTLRIQGMYAYGFLKGEAGIHRLIRISPFDASGRRHTSFASVDVYP- 163
Query: 186 FLETSPDLQIS--DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E S D++I DED+ +F + G+ + A I H+ T I V+
Sbjct: 164 --EISQDIEIEIKDEDIRLDVFRASGPGGQHVNKTNSAVRITHLATNIVVQ 212
>gi|1172913|sp|P43918.1|RF2_HAEIN RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|309751145|gb|ADO81129.1| Peptide chain release factor 2 (RF-2) [Haemophilus influenzae
R2866]
Length = 365
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP K+ + + +VVN +K+L E+ + +LA +EA D F A
Sbjct: 45 DVWNDPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA-IEAEDEDTFNEAVAEL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L++ E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 104 DELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI+ EYAFG+L ETG H L+ F + + H + + V
Sbjct: 164 ELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFSAAFV 222
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 223 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 273
>gi|314933063|ref|ZP_07840429.1| peptide chain release factor 2 [Staphylococcus caprae C87]
gi|313654382|gb|EFS18138.1| peptide chain release factor 2 [Staphylococcus caprae C87]
Length = 333
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D +K+ E++ K +VN +DL + ++ +L + E D + +
Sbjct: 1 MMADPDFWNDQSKAQEIIDKNNALKSIVNGYRDLANEVDDMSATRELLQ-EEYDEDMKEE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQ+E+ LL GP+D A + G+ G + WA LL MY R+ ++
Sbjct: 60 LESDVIQFKDKMDQFELQLLLDGPHDANNAIFELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G+ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFNVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|159898428|ref|YP_001544675.1| peptide chain release factor 2 [Herpetosiphon aurantiacus DSM 785]
gi|159891467|gb|ABX04547.1| peptide chain release factor 2 [Herpetosiphon aurantiacus DSM 785]
Length = 337
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
Query: 6 NLWDDPTKSNEVLVKLA---DSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWD+P ++ +L +LA + LK+ ++L A + + L ++ A D +
Sbjct: 12 SLWDNPQQAQSILQRLARMQEELKMWDSL------AVDLATLRDLLQLSADDADSLSQIE 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
R ++K +DQ E+S LL D A ++I++G+ G+ + WA+ LL MY RW + +G
Sbjct: 66 REVNGLTKSVDQLELSILLGEKYDSTNAFISIQSGAGGVESQDWAQMLLRMYSRWGESQG 125
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
+R +VD + G+KSAT+E YA+GY E G H L+ + + + A V
Sbjct: 126 FRTTIVDMMDGEEAGIKSATLELRGPYAYGYAKAEAGIHRLVRLSPFDANHRRHTSFARV 185
Query: 181 DVVPLFLETSPDLQISDEDL 200
+V+P ++ + +++I+ EDL
Sbjct: 186 EVLP-EVDDAAEVKINPEDL 204
>gi|387779889|ref|YP_005754687.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
LGA251]
gi|344176991|emb|CCC87455.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
LGA251]
Length = 369
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKALQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>gi|377563641|ref|ZP_09792980.1| peptide chain release factor 2 [Gordonia sputi NBRC 100414]
gi|377529088|dbj|GAB38145.1| peptide chain release factor 2 [Gordonia sputi NBRC 100414]
Length = 371
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + ++ + +LAE E G + + A
Sbjct: 43 DLWNDQDHAQKVTSELSHAQAELRRVTELRQRLDDMPVHYELAESEE---GEARTSALAD 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + + E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+K
Sbjct: 100 ADAERESLRSDIQAMEVKTMLAGEYDSRDAVVNIRSGAGGVDAADWAQMLMRMYIRWAEK 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ + + + A
Sbjct: 160 HGYGVEVYDTSYAEEAGLKSATFAVKSPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 EVEVLPV-VETTDHIDVDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>gi|291522080|emb|CBK80373.1| bacterial peptide chain release factor 2 (bRF-2) [Coprococcus catus
GD/7]
Length = 336
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 7/236 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ WD+ K+N + +L + V L E+ + + ++ E D L
Sbjct: 1 MMEEPGFWDNADKANNSMKELKNLKDTVEEYHRLETAWEDVETLLEMG-YEENDASLIPE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A D K + + LL D + A VT+ AG+ G W L MY RWA+K
Sbjct: 60 VQEAMADFEKRFEHLRIKTLLSEEYDGDNAIVTLHAGAGGTEACDWVSMLFRMYTRWAEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G+ V+D + G+KS T+E E A+GY+ E G H L+ N + + + A
Sbjct: 120 HGFTTTVLDYLDGEEAGIKSVTVEIAGENAYGYMKSEKGIHRLVRISPFNAAGKRQTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
DV+P +E D++I+++DL + S G+ + A I H+PT I V+
Sbjct: 180 SCDVMP-DIEEDLDIEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTNIVVQ 234
>gi|73663271|ref|YP_302052.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495786|dbj|BAE19107.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 334
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 6/229 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ +V+ K VVNA + L + E+ L +E D + + ++
Sbjct: 6 FWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQDLEQSVQ 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ +++G+
Sbjct: 65 DFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQKGFNVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D GVKS T+ + A+GYL E G H L+ + S + A DV+P
Sbjct: 125 IADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
F T ++ I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 185 QFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|260581088|ref|ZP_05848909.1| peptide chain release factor 2 [Haemophilus influenzae RdAW]
gi|260092217|gb|EEW76159.1| peptide chain release factor 2 [Haemophilus influenzae RdAW]
Length = 351
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP K+ + + +VVN +K+L E+ + +LA +EA D F A
Sbjct: 31 DVWNDPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA-IEAEDEDTFNEAVAEL 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L++ E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 90 DELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI+ EYAFG+L ETG H L+ F + + H + + V
Sbjct: 150 ELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFSAAFV 208
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 209 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 259
>gi|415683581|ref|ZP_11448797.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS00]
gi|418565434|ref|ZP_13129838.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21264]
gi|418595814|ref|ZP_13159409.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21342]
gi|418601772|ref|ZP_13165188.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21345]
gi|315194373|gb|EFU24765.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
CGS00]
gi|371973363|gb|EHO90713.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21264]
gi|374397583|gb|EHQ68792.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21345]
gi|374400422|gb|EHQ71536.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21342]
Length = 330
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|384564721|ref|ZP_10011825.1| peptide chain release factor 2 [Saccharomonospora glauca K62]
gi|384520575|gb|EIE97770.1| peptide chain release factor 2 [Saccharomonospora glauca K62]
Length = 368
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + L +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDPEAAQKVTSQLSHKQASLRRLTELRQRVDDLAVLHELAEAEG-DAASRSEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+VS+ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AEVSREVDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 162 EVYDISYAEEAGIRSATFKVSGPYLYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 221
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+ V D+++ ++ S G+ + A I H+PTGI V
Sbjct: 222 PEVEEVDHVEIPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>gi|325066934|ref|ZP_08125607.1| peptide chain release factor 2 [Actinomyces oris K20]
Length = 373
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDDP + V L+ + + ++ L + E+ + + +LA E + + A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGEDAAEILAEAET 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A +TI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADFAEMLLRMYTRWAERHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 223 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 273
>gi|114565810|ref|YP_752964.1| peptide chain release factor 2 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114336745|gb|ABI67593.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 334
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W + ++ E+L +++ + +N K+L A+ I ++AE E D L++ + R
Sbjct: 9 NFWSERKEAQEILKQISKLQENLNLYKELMGTAQYLNDILEMAEEEN-DETLWQESVREL 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + K ++E+ L GP+D A V++ AG+ G + W E L MY RWA+ Y
Sbjct: 68 LALQKRFREFELLVLFSGPHDYSNAIVSLHAGAGGTEAQDWVEILFRMYSRWAENSSYSI 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T YAFG L E G H LI + S + A + V+
Sbjct: 128 EVLDFLDGDEAGIKSVTFLVRGPYAFGKLKCEEGVHRLIRISPFDSSGRRHTSFASLSVL 187
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E + D++ I+ EDL + S G+ + A I H+P+GI V+
Sbjct: 188 P---EINEDIEVLINVEDLRVDTYRSSGAGGQHINKTDSAVRITHLPSGIVVQ 237
>gi|381400038|ref|ZP_09925050.1| peptide chain release factor 2 [Microbacterium laevaniformans
OR221]
gi|380772656|gb|EIC06348.1| peptide chain release factor 2 [Microbacterium laevaniformans
OR221]
Length = 369
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLA-EMEAIDYGLFKRAYRA 64
+LWDD K+ +V L+ + + D+ + ++ +++ ++A EM+ D R A
Sbjct: 44 DLWDDVEKAQKVTSALSHRQADLKRVTDVEQRLDDLEVLVEMAHEMDDEDTAAEARREIA 103
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+L ++ Q E+ LL G D A VTI++G+ G +AE LL MY+RWA++ Y
Sbjct: 104 AL--QDVIGQLEVQTLLDGEYDDRPAVVTIRSGAGGDDATDFAEMLLRMYLRWAERHKYT 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+V+D + G+KSAT E + YA+G LS E G H L G+ + + A V+V
Sbjct: 162 VKVMDTSYAEGAGIKSATFEVDAPYAYGTLSVEAGTHRLARISPFGGADKRQTSFAAVEV 221
Query: 183 VPLFLETSP------DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P E D+++ +F S G+ + A I H+PTG+ V
Sbjct: 222 IPALEEAVEVEVPEGDIRVD----VFRSSGPGGQSVNTTDSAVRITHLPTGLVV 271
>gi|325291337|ref|YP_004267518.1| peptide chain release factor 2 (bRF-2) [Syntrophobotulus glycolicus
DSM 8271]
gi|324966738|gb|ADY57517.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophobotulus
glycolicus DSM 8271]
Length = 371
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + +++ +L + V +L+ + E+ +++ Q+A ME D L +
Sbjct: 43 DFWDDRSNAQKIMQELTGNKDKVALFGELKTETEDLEVLWQMA-MEEDDSSLEDEIVKDI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ D+ E+ LL G D A +T+ +G+ G + W + L MY+RW ++ Y+
Sbjct: 102 HRIRAQYDELELEILLSGEYDRNNAIITLHSGAGGTEAQDWVQMLYRMYLRWGERRRYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KS T E AFGY E G H L+ + S + A VDV+
Sbjct: 162 ETLDLLPGEEAGIKSVTFSLAGENAFGYAKCEKGVHRLVRISPFDSSGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQIS--DEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E + D++I+ EDL + S G+ + A I HIP+GI V+
Sbjct: 222 P---EVNEDMEINIDSEDLKVDTYRSGGAGGQHVNKTDSAVRITHIPSGIIVQ 271
>gi|416849065|ref|ZP_11908008.1| peptide chain release factor 2 [Staphylococcus aureus O46]
gi|323441389|gb|EGA99047.1| peptide chain release factor 2 [Staphylococcus aureus O46]
Length = 331
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFEVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|418561330|ref|ZP_13125822.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21262]
gi|371977675|gb|EHO94938.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21262]
Length = 330
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N W++ TK+ E++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWENQTKAQEIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 INFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|421466491|ref|ZP_15915170.1| peptide chain release factor 2 [Acinetobacter radioresistens
WC-A-157]
gi|400203271|gb|EJO34264.1| peptide chain release factor 2 [Acinetobacter radioresistens
WC-A-157]
Length = 351
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D T++ + + + V+N L+ L + E+A+ + LA +EA D L
Sbjct: 31 SIWNDQTRAQAMAKEKGELENVINVLEGLSTQLEDAQAMLDLA-VEADDESLLADVQAEL 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L + E ++ P D V I+AGS G + WA LL MY+RW ++ G++
Sbjct: 90 SSAEEALAKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKA 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++++ G+KSATI E EYA+G+L E+G H L+ F +G+ H + + V V
Sbjct: 150 ELMEESDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRH-TSFSAVFV 208
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + ++ I+ D+ + + G+ + A + H+PTGI V
Sbjct: 209 SP-EVDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHMPTGIVV 258
>gi|348027317|ref|YP_004767122.1| peptide chain release factor 2 [Megasphaera elsdenii DSM 20460]
gi|341823371|emb|CCC74295.1| peptide chain release factor 2 [Megasphaera elsdenii DSM 20460]
Length = 337
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKV-VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+DP K+ ++ + A LK V ++L KA++ ++A ME D + +
Sbjct: 8 FWNDPDKAKKI-SQEATLLKTEVEGHEELVRKADDLSEYLEMA-MEDGDASFAEDIEKQY 65
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ K +++ E+ LL G D A +T AG+ G + WA+ L+ MY RWA++ GY+
Sbjct: 66 HDLLKDIEKREVRLLLSGEYDKCNALITFHAGAGGTEAQDWAQMLIRMYTRWAERNGYKL 125
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G+KSA E EYA+GYL E G H L+ + + + VDV+
Sbjct: 126 TILDMQPGDEAGIKSAAFRVEGEYAYGYLKSEKGVHRLVRISPFDAAARRHTSFTAVDVM 185
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L D++I+ +D+ F + G+ + A + H+PTGI V+
Sbjct: 186 PE-LPDDVDVEINMDDVRVDYFRASGAGGQHVNKTSSAVRMTHMPTGIVVQ 235
>gi|238897260|ref|YP_002922937.1| peptide chain release factor RF-2 [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465015|gb|ACQ66789.1| peptide chain release factor RF-2 [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 348
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 24/223 (10%)
Query: 16 EVLVKLADSLKVVNALKDLRYKAEEAKLIAQ-LAEMEAIDYGLFKRAYRASLDVSKLLDQ 74
E L +L LK V+ L DL +A++ + + + E+EAID K L++
Sbjct: 51 ETLSQLEKELKDVSTLLDLAIEAQDRETFNEAVFELEAID---------------KKLNR 95
Query: 75 YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK 134
E ++ G ND + +++GS G + WA LL MY+RWAD +G++ +++ +
Sbjct: 96 LEFRRMFSGKNDFADCYLDLQSGSGGTEAQDWANMLLRMYLRWADSKGFKTEIIEISDGE 155
Query: 135 NGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETSP 191
G+KSAT++ ++AFG+L ETG H L+ F +G+ H + A V P LE +
Sbjct: 156 VAGIKSATLKITGDHAFGWLRTETGVHRLVRKSPFDSGARRH-TSFASAFVYPE-LEDNI 213
Query: 192 DLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
D+ I+ DL ++ + G+ + + A I H+PT I +
Sbjct: 214 DIDINPADLRIDVYRASGAGGQHINKTESAVRITHLPTNIVTQ 256
>gi|325109320|ref|YP_004270388.1| peptide chain release factor 2 (bRF-2) [Planctomyces brasiliensis
DSM 5305]
gi|324969588|gb|ADY60366.1| bacterial peptide chain release factor 2 (bRF-2) [Planctomyces
brasiliensis DSM 5305]
Length = 373
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ K+ E + +L +V L++L ++ +++ + AE A D + ++
Sbjct: 44 FWDNQEKAQETMAELRRLKSLVTPLEELVQGRDDLEVLLEFAE--ADDSEETVQEITSTC 101
Query: 67 D-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D + ++D+ E LL P D A VTI+AG G WAE LL MY+RWA+KE
Sbjct: 102 DRLGSIVDKVEFQLLLGQPEDALNAYVTIQAGEGGTDAADWAEMLLRMYIRWAEKEEMAT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++++ + G++ AT+ + +YAFGYL GE+G H L+ N + + A VDV
Sbjct: 162 ELLERTDAEEAGIRHATLLIKGDYAFGYLKGESGNHRLVRMSPFNSAGKRQTAFAAVDVT 221
Query: 184 PLFLETSPDLQIS-----DEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ S ++ I DED + + + G+ + + A + H +G+ VR
Sbjct: 222 P-EVDDSFEIDIDWDNDVDEDTMRAGGA-GGQHVNKTESAVRLTHKESGLVVR 272
>gi|374989282|ref|YP_004964777.1| peptide chain release factor 2 [Streptomyces bingchenggensis BCW-1]
gi|297159934|gb|ADI09646.1| peptide chain release factor 2 [Streptomyces bingchenggensis BCW-1]
Length = 383
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + ++LR + ++ +++ +A D + A
Sbjct: 57 SLWDDPENAQKITSRLSYLQGQLRKAEELRSRIDDLEVL--FELADAEDDADARAEAVAE 114
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD V K +D+ E+ LL G D A V I+A + G+ +AEQL MY+RWA++ GY+
Sbjct: 115 LDSVRKAVDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEQLQRMYLRWAERHGYK 174
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KS T + YA+G LS E G H L+ + + + A V+V
Sbjct: 175 TEVYDTSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEV 234
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 235 LPV-VEKTDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 284
>gi|240143320|ref|ZP_04741921.1| peptide chain release factor 2 [Roseburia intestinalis L1-82]
gi|257204691|gb|EEV02976.1| peptide chain release factor 2 [Roseburia intestinalis L1-82]
gi|291536819|emb|CBL09931.1| bacterial peptide chain release factor 2 (bRF-2) [Roseburia
intestinalis M50/1]
gi|291539122|emb|CBL12233.1| bacterial peptide chain release factor 2 (bRF-2) [Roseburia
intestinalis XB6B4]
Length = 338
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDDP S + + +L V L+ + E+ + + ++ E D L
Sbjct: 5 NFWDDPVVSQKKMKELKSMKDDVATYASLKTEFEDIETLIEMG-YEENDASLIPEIQEML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +K + + LL G D +GA V++ AG+ G WA L MY RWA +G+
Sbjct: 64 DEFTKTYEGIRIKTLLSGEYDSDGAIVSLHAGAGGTESCDWAAMLYRMYTRWASDKGFSV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T + E A+GY+ E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGEEAGIKSITFQINGENAYGYMKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D++I+++DL + S G+ + A I HIPTGI V+
Sbjct: 184 P-DIEEDLDVEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGIVVQ 233
>gi|451341196|ref|ZP_21911663.1| Peptide chain release factor 2 [Amycolatopsis azurea DSM 43854]
gi|449415922|gb|EMD21722.1| Peptide chain release factor 2 [Amycolatopsis azurea DSM 43854]
Length = 370
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + +V +L+ + + +LR + ++ ++ +LAE E D +
Sbjct: 46 NLWDDPEAAQKVTSQLSHRQSELRRISELRQRLDDLGVLYELAEAEG-DSASVAESETEL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 105 TALTKDIDGLEVRTLLSGEYDPRNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPT 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
V D + G+KSAT + Y +G LS E G H L+ F N SF H +
Sbjct: 165 DVYDISYAEEAGIKSATFKVSAPYVYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVM 224
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+ V D+++ ++ S G+ + A I HIPTG+ V
Sbjct: 225 PEVEEVDHVDIPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHIPTGVVV 273
>gi|381180503|ref|ZP_09889342.1| bacterial peptide chain release factor 2 (bRF-2) [Treponema
saccharophilum DSM 2985]
gi|380767491|gb|EIC01491.1| bacterial peptide chain release factor 2 (bRF-2) [Treponema
saccharophilum DSM 2985]
Length = 380
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 8/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ +V+ L + +DL +A++ + +LA + D G + R +L
Sbjct: 44 FWNDTEKAQKVMNDLKLLKGRIEPWRDLISQADDISTLYELAIEDGDDDGSLEAEVRTNL 103
Query: 67 DVS-KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K ++ + LL G D G +TI AG+ G WA L MY+RWA++ GY+
Sbjct: 104 EAAQKRFEELSILNLLSGEADKNGCFLTIHAGAGGTEACDWAYMLSRMYIRWAERHGYKL 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GG+KS TI+ E +Y +G+L GE G H L+ + + + + V +
Sbjct: 164 ETVD-LQEDEGGIKSTTIQIEGDYVYGHLKGEAGVHRLVRISPFDANARRHTSFSSVFIF 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P+ L+ + ++ I EDL + S G+ + A H+PTGI V+
Sbjct: 223 PI-LDDTIEVNIRPEDLRVDTYRSGGKGGQHVNKTDSAVRFTHLPTGIVVQ 272
>gi|366164665|ref|ZP_09464420.1| peptide chain release factor 2 [Acetivibrio cellulolyticus CD2]
Length = 340
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D S +VL K+ + + L + E+AK + +L +E D +F +
Sbjct: 16 DFWNDIENSQKVLQKIKTMKEKLERYNRLTQEWEDAKTLCELG-LEEDDESVFTEVEDSF 74
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K ++ + LL GP D A +T+ AG+ G + W + LL M+ RW + +G+
Sbjct: 75 KKFKKDFEELRLETLLIGPYDKNNAILTLHAGAGGTEAQDWVQMLLRMFTRWGESKGFTV 134
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
R++D + G+KS TI E A+GYL E G H L+ + S + A DV+
Sbjct: 135 RILDYLDGEEAGIKSVTINVIGENAYGYLKSEKGVHRLVRISPFDASGRRHTSFASCDVM 194
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E S D++ I+ +DL + + G+ + + A I HIPTG+ V
Sbjct: 195 P---ELSDDVEVNINPDDLRIDTYRASGAGGQHINKTESAIRITHIPTGVVV 243
>gi|168185950|ref|ZP_02620585.1| peptide chain release factor 2 [Clostridium botulinum C str.
Eklund]
gi|169295927|gb|EDS78060.1| peptide chain release factor 2 [Clostridium botulinum C str.
Eklund]
Length = 326
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Query: 73 DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCC 132
D +++ LL G D A V++ +G+ G + W E LL MY RWA+K+GY+ +D
Sbjct: 71 DDFKVQILLSGEYDKNNAIVSLHSGAGGTDAQDWTEMLLRMYTRWAEKKGYKVDTIDILP 130
Query: 133 CKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETS 190
G+KSA+++ E+A+GYL E G H L+ N + + + A ++V+P E +
Sbjct: 131 GDEAGIKSASLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASLEVIPELRE-N 189
Query: 191 PDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
D++I +DL + + G+ + A I HIPTGI V+ +
Sbjct: 190 QDIEIKADDLRVDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQS 236
>gi|294142345|ref|YP_003558323.1| peptide chain release factor 2 [Shewanella violacea DSS12]
gi|293328814|dbj|BAJ03545.1| peptide chain release factor 2 [Shewanella violacea DSS12]
Length = 352
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 5/234 (2%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+ N ++W+DP + + + A +V + D+ E+ + + LA +E D F A
Sbjct: 28 LENSDVWNDPDNAQALGKERAALELIVKTIDDMDTGLEDVEGLLDLA-IEEGDEDTFNDA 86
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
D+ K L+ E ++ GP+D+ + + I++GS G + WA +L MY+RW +
Sbjct: 87 SAELDDLEKRLEDLEFRRMFSGPHDIANSYLDIQSGSGGTEAQDWANMVLRMYLRWGEAH 146
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATLACV 180
Y+ +++ G+K ATI+F EYAFG L ETG H L+ P S T C
Sbjct: 147 DYKPELIEVTAGDVAGIKGATIKFNGEYAFGSLRTETGVHRLVRKSPFDSSGKRHTSFCS 206
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V ++ S ++ I+ DL + + G+ + + A I H+PT V+
Sbjct: 207 VFVYPEIDDSIEIDINPSDLRIDTYRASGAGGQHINKTESAIRITHVPTNTVVQ 260
>gi|291442144|ref|ZP_06581534.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
gi|291345039|gb|EFE71995.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672]
Length = 375
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 14/231 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ +L+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFEMAE-EEDDPDTRAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ADVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDLLF-----SSPSL-PGERQSIAKPAACIQHIPTGI 228
P+ +E S + I + DL S PS P + + + I H+PTGI
Sbjct: 223 PV-VEQSDHVDIDESDLRVDVYRSSGPSCNPRDSDFMVR----ITHLPTGI 268
>gi|453049954|gb|EME97515.1| peptide chain release factor 2 [Streptomyces mobaraensis NBRC 13819
= DSM 40847]
Length = 368
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + + LR + ++ ++ +LAE E A
Sbjct: 44 SLWDDPEAAQKITSQLSHLQAELRKAETLRGRIDDLGVLFELAEAEDDAD-ALAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 VSVRKALDEMEVRTLLSGEYDAREAVVNIRAEAGGVDASDFAERLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +ET+ ++I + DL ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VETTDHVEIDESDLRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|229916623|ref|YP_002885269.1| peptide chain release factor 2 [Exiguobacterium sp. AT1b]
gi|259585245|sp|C4L5K9.1|RF2_EXISA RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|229468052|gb|ACQ69824.1| peptide chain release factor 2 [Exiguobacterium sp. AT1b]
Length = 366
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ K+ +V+ + +V+ +DL + E+ ++ +L + E D + + +
Sbjct: 44 DFWDNQEKAQKVIDESNGLKAMVDKYQDLANQHEDGEVTLELIKEEP-DAEMQEELGESI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K D +E+ LL GP D A + + G+ G + WA LL MY R+ADK+G++
Sbjct: 103 QALKKEFDDFELEILLNGPYDANNAILELHPGAGGTESQDWASMLLRMYQRFADKQGWKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD + GVKS T+ A+GYL E G H L+ F + H + ++C DV
Sbjct: 163 ETVDYLPGEEAGVKSVTLRIVGHNAYGYLKAEKGIHRLVRISPFDSSGRRHTSFVSC-DV 221
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P F + ++++ EDL + + G+ + A I H+PTG+ V
Sbjct: 222 MPEF-DDDIEIEVRTEDLRIDTYRASGAGGQHINTTDSAVRITHVPTGVVV 271
>gi|116051698|ref|YP_789463.1| peptide chain release factor 2 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115586919|gb|ABJ12934.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 332
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N+W++P + + + A +VV L DL +++ + +A +E D G
Sbjct: 12 NVWNNPEYAQNLGRERAQLAQVVETLDDLTSGLADSRDLLDMA-VEEDDEGAVDDVANEV 70
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++L++ E ++ G D A + I+AGS G + WA LL MY+RWADK G+
Sbjct: 71 ERLREILEKLEFRRMFSGEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWADKHGFDA 130
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ + G+K AT+ + EYAFG+L E G H L+ F +G+ H + V V
Sbjct: 131 TIIELSEGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRH-TSFTAVFV 189
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + +++I+ DL + S G+ + A I H+PT V
Sbjct: 190 SP-EIDDNIEIEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVV 239
>gi|420175418|ref|ZP_14681856.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM061]
gi|394243353|gb|EJD88719.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM061]
Length = 333
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +V+ L ++ +L + E D + K
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQ-EEYDEDMKKE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|308198348|ref|YP_003933612.1| peptide chain release factor 1 [Pseudomonas aeruginosa PAO1]
gi|307752087|gb|ADN93061.1| peptide chain release factor I [Pseudomonas aeruginosa PAO1]
Length = 364
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N+W++P + + + A +VV L DL +++ + +A +E D G
Sbjct: 44 NVWNNPEYAQNLGRERAQLAQVVETLDDLTSGLADSRDLLDMA-VEEDDEGAVDDVANEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++L++ E ++ G D A + I+AGS G + WA LL MY+RWADK G+
Sbjct: 103 ERLREILEKLEFRRMFSGEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWADKHGFDA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ + G+K AT+ + EYAFG+L E G H L+ F +G+ H + V V
Sbjct: 163 TIIELSEGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRH-TSFTAVFV 221
Query: 183 VP-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P + +E +P DL+I + S G+ + A I H+PT V
Sbjct: 222 SPEIDDNIEIEINPADLRID----TYRSSGAGGQHVNTTDSAVRITHVPTNTVV 271
>gi|374856895|dbj|BAL59748.1| peptide chain release factor RF-2 [uncultured candidate division
OP1 bacterium]
Length = 260
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 8/228 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
W+D ++ V ++ +++ K L + ++ +++ +L + E D + + +
Sbjct: 5 GFWEDKRRAKLVAQQVEQKRRILQKYKALETQLDDLEVLEELGKSEG-DPSVEREVQLGA 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K L E+ L P D ++I+AG+ G + WAE LL MY+R+ ++ G+R
Sbjct: 64 QELEKRLAALELEAFLNEPYDPNDCYLSIQAGAGGTDAQDWAEMLLRMYLRYIERRGWRA 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KSAT+E + YA+GYL E G H L+ + + + A V VV
Sbjct: 124 SIIEASPGEVAGIKSATVEVQGPYAYGYLKAERGVHRLVRISPFDANARRHTSFAAVTVV 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
P E +++I+ EDL F + G+ + + A I H+PTGI
Sbjct: 184 PKVEEA--EVEINPEDLKIDTFRAGGAGGQYVNKTESAVRITHLPTGI 229
>gi|336118944|ref|YP_004573716.1| peptide chain release factor 2 [Microlunatus phosphovorus NM-1]
gi|334686728|dbj|BAK36313.1| peptide chain release factor 2 [Microlunatus phosphovorus NM-1]
Length = 368
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + + +L+ ++ + DLR + ++ ++ +LA E+ D A
Sbjct: 44 DLWDDVDNAQRITSRLSALQSEIDRVADLRSRLDDLSVLIELATEES-DAASLAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++ E+ LL G D A VTI++ + G+ +A LL MY+RWA++ GY
Sbjct: 103 SSLQHAVESLEVRTLLSGEYDPREALVTIRSEAGGVDAADFAAMLLRMYLRWAERHGYPA 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYDTSYAEEAGIKSATFQVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E + + I + D+ +F S G+ + A I H+PTGI V
Sbjct: 223 PV-TEEADHIDIPEADIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 271
>gi|297848140|ref|XP_002891951.1| hypothetical protein ARALYDRAFT_474798 [Arabidopsis lyrata subsp.
lyrata]
gi|297337793|gb|EFH68210.1| hypothetical protein ARALYDRAFT_474798 [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + ++ + + + + E + +LA+ E D L +A
Sbjct: 141 DLWNDPIHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKEEN-DTELESETLKAM 199
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+D+ ++ + E+ LL ND + ++AG+ G WA ++ MY WA + +
Sbjct: 200 MDMRRVSKEKELEALLSAENDPCSCYIEVQAGAGGTESNDWASMVMEMYKTWAQRRKFSV 259
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ EY++GY E G H L+ F +G H + A V V
Sbjct: 260 TVVDEAAGEIAGIKRATIKVNGEYSYGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAV 318
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+P+ + S +QI+D DL F S G+ + A I HIPTGI
Sbjct: 319 IPILGDGSTRVQINDSDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGI 367
>gi|374852036|dbj|BAL54979.1| peptide chain release factor RF-2 [uncultured Chloroflexi
bacterium]
Length = 311
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 10/218 (4%)
Query: 18 LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM 77
+ +LAD + V + + + +A + QL E E++ L K + + + +Q
Sbjct: 1 MRRLADLRETVETWQAFQQRLHDALELCQL-EDESLREELEKEVH----SLEEEFEQKSF 55
Query: 78 SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGG 137
+ +L GP D A + I AG+ G + WA L+ MY+RWA++ GY ++D + G
Sbjct: 56 AAMLSGPYDAGDALLAIHAGAGGTDSQDWAAMLMRMYLRWAERRGYETEILDMTEGEEAG 115
Query: 138 VKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQI 195
+KS TI +YA+GYL E G H L+ + + + A V+V+P P + I
Sbjct: 116 IKSVTIAVNGKYAYGYLRSEKGVHRLVRLSPFDAAHRRHTSFAMVEVLPQIAMDDPVVVI 175
Query: 196 SDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+DL ++ + S G+ A I HIPTGI V
Sbjct: 176 DPKDLKIDVYRASSAGGQNVQKNATAVRITHIPTGIVV 213
>gi|416051802|ref|ZP_11577825.1| peptide chain release factor 2 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992614|gb|EGY33999.1| peptide chain release factor 2 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 335
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D K+ + + ++VVN +K+L+ E+ + +LA +EA D F A
Sbjct: 15 DVWNDADKAQALGKERVSLVQVVNTIKNLKQGLEDVDGLLELA-VEAEDEDTFNEAVAEL 73
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L++ E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 74 DELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 133
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI+ EYAFG+L ETG H L+ F + + H + + V
Sbjct: 134 ELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFSAAFV 192
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 193 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 243
>gi|374297349|ref|YP_005047540.1| peptide chain release factor 2 [Clostridium clariflavum DSM 19732]
gi|359826843|gb|AEV69616.1| peptide chain release factor 2 [Clostridium clariflavum DSM 19732]
Length = 328
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D S ++L ++ V L + E+ + + +L ME D + +
Sbjct: 4 DFWNDVENSQKILQRIKTLKDKVERYNKLTQEWEDVRTLCELG-MEEEDDSVLSEVEESF 62
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K + + LL GP D A +T+ AG+ G + W + LL M+ RWA+K+G+
Sbjct: 63 KKFKKDFETLRLETLLTGPYDKNNAILTLHAGAGGTEAQDWVQMLLRMFTRWAEKKGFTV 122
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++D + G+KS TI E A+GYL E G H L+ + S + A DV+
Sbjct: 123 KILDILDGEEAGIKSVTINVIGENAYGYLKSEKGIHRLVRISPFDASGRRHTSFASCDVM 182
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E S D++ I+ EDL + + G+ + + A I HIPTGI V
Sbjct: 183 P---ELSDDIEININPEDLKIDTYRASGAGGQHINKTESAVRITHIPTGIVV 231
>gi|297626158|ref|YP_003687921.1| peptide chain release factor 2 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921923|emb|CBL56483.1| Peptide chain release factor 2 (RF-2) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 369
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + V +L+ V ++ LR + ++A + +LA E+ D + A +
Sbjct: 44 DLWNDQEHAQSVTSRLSRLQSSVEKVQTLRSRLDDASTLLELASEES-DADTAQEAEKEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D E+ LL G D A VTI++ + G+ +A LL MY RWA++ Y
Sbjct: 103 ATLADEIDTLEVQTLLSGEYDERDALVTIRSEAGGVDAADFAAMLLRMYERWAERHAYSY 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYDISYAEEAGIKSATFTVKSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET ++ I ++D+ +F + G+ + A I H+PTGI V
Sbjct: 223 PVVEETD-NIDIPEKDIRVDVFHASGPGGQGVNTTDSAVRITHLPTGIVV 271
>gi|417902351|ref|ZP_12546218.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21266]
gi|341843441|gb|EGS84668.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21266]
Length = 331
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + +GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNVYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|410866577|ref|YP_006981188.1| Peptide chain release factor 2 [Propionibacterium acidipropionici
ATCC 4875]
gi|410823218|gb|AFV89833.1| Peptide chain release factor 2 [Propionibacterium acidipropionici
ATCC 4875]
Length = 368
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + +V +L+ V L+ LR + E+ ++ + A + G A A
Sbjct: 44 DLWDDQEHAQQVTSRLSALQSQVEKLEQLRSRIEDVGVLLEFAG----EGGDADSAAEAE 99
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++S L +D E+ LL G D A VTI++ + G+ +AE LL MY+RWA++
Sbjct: 100 GEISSLRTEIDALEVRTLLSGKYDEREALVTIRSEAGGVDAADFAEMLLRMYLRWAERHQ 159
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y+ V+D + G+KSAT +A+G LS E G H L+ + + + A V
Sbjct: 160 YKVEVLDTSYAEEAGIKSATFIVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGV 219
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 220 EVLPVVEETDH-VDIPEADLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|410635618|ref|ZP_11346226.1| peptide chain release factor 2 [Glaciecola lipolytica E3]
gi|410144701|dbj|GAC13431.1| peptide chain release factor 2 [Glaciecola lipolytica E3]
Length = 325
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 13/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W++P ++ + + +VV ++ L AE+ + + +LA +EA D F A
Sbjct: 6 VWNEPERAQALGKEKVALEQVVETIEQLDQGAEDVEGLLELA-IEAEDQETFDEAQTELN 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ + L+ E ++ GPND + I++GS G + WA LL M++RW + G++
Sbjct: 65 QLVEKLELLEFRRMFSGPNDTNDCYLDIQSGSGGTEAQDWANMLLRMFLRWGEAHGFKPE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ G+KSAT+ F EYAFG+L ETG H L+ F +G+ H + A V
Sbjct: 125 LIEVSDGDVAGIKSATVRFTGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASAFVY 183
Query: 184 PLFLETSPDLQ--ISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E + D++ I+ DL + + G+ + A I H+PT I V+
Sbjct: 184 P---EINDDIEIDINPSDLRIDTYRASGAGGQHVNRTDSAVRITHLPTNIVVQ 233
>gi|296394151|ref|YP_003659035.1| peptide subunit release factor 2 [Segniliparus rotundus DSM 44985]
gi|296181298|gb|ADG98204.1| peptide chain release factor 2 [Segniliparus rotundus DSM 44985]
Length = 372
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LW+D + EV LA + A+ LR + ++ ++ +LAE E G + A
Sbjct: 43 SLWEDQERGQEVTSGLARKQATLRAVTGLRSRLDDLHVLYELAEDEEGAQGQEALEEADT 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ E+ LL G D A VTI++G+ GI WA+ L+ MY+RWA++ +
Sbjct: 103 ERKTLRAEIESLEVRTLLNGEYDEREALVTIRSGAGGIDAADWAQMLMRMYIRWAERHKH 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
V D + G+KSAT + YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVEVYDISYAEEAGIKSATFAVKSAYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFADVE 222
Query: 182 VVPLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P+ T P+ +I + S P G+ + A I H+PTGI V
Sbjct: 223 VLPVVGTTDHIDVPEAEIRVDVYRSSGPG--GQSVNTTDSAVRITHLPTGIVV 273
>gi|333372654|ref|ZP_08464578.1| peptide chain release factor RF2 [Desmospora sp. 8437]
gi|332971716|gb|EGK10664.1| peptide chain release factor RF2 [Desmospora sp. 8437]
Length = 331
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 13/232 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ +V+ + +V +K+L EE ++IA+L E D + A
Sbjct: 6 FWNDQGKAQKVIDENNHLKGIVQGVKELEEAHEELQVIAELI-AEEDDESMLPEAEEGLK 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LD++E+S LL P D A + + G+ G + WA+ LL MY RWA+ GY+
Sbjct: 65 DLKRKLDEFELSLLLSDPYDKNSAILELHPGAGGTESQDWAQILLRMYTRWAEHRGYKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D + GVKS T+ + A+GYL E G H L+ + S + +V+P
Sbjct: 125 TLDFLPGEEAGVKSVTLLIKGHNAYGYLRAEKGVHRLVRISPFDSSGRRHTSFVSANVMP 184
Query: 185 LFLET------SPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ S D++I + S G+ + A I H+PT I V
Sbjct: 185 EIEDDDEIEIRSEDIKID----TYRSSGAGGQHVNTTDSAVRITHLPTNIVV 232
>gi|343523632|ref|ZP_08760593.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 175 str.
F0384]
gi|343399849|gb|EGV12370.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 373
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADS---LKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDP + V L+ + LK V +L + R + EA + E + A
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGE-RIEDLEAMVELGGEEEGEDAAEILAEAE 101
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+SK L E+ LL G D A +TI++G+ G+ +AE LL MY RWA++
Sbjct: 102 TDLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADFAEMLLRMYTRWAERHD 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y +V++ + G+KS T E YA+G LS E G H L+ + + + A V
Sbjct: 162 YPVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 222 EVIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 273
>gi|418622556|ref|ZP_13185301.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU123]
gi|374826312|gb|EHR90211.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU123]
Length = 333
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+L+DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEEEVQQFEELIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|389578252|ref|ZP_10168279.1| peptide chain release factor 2 [Desulfobacter postgatei 2ac9]
gi|389399887|gb|EIM62109.1| peptide chain release factor 2 [Desulfobacter postgatei 2ac9]
Length = 366
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 7/236 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
++ + W+DP K+ E+L + +++ + + E+ ++ +LA E+ D +
Sbjct: 37 LIAKEDFWNDPDKATEMLKERTTIAALIDTCNAIFSEIEDVDVLLELAREES-DKAAEEE 95
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A + D+ K + ++ + L G +D A V+I AG+ G + WAE L MY RW DK
Sbjct: 96 AAQMLADLEKKVKRFSLEITLDGEDDARDAIVSINAGAGGTDSQDWAEMLFRMYTRWIDK 155
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+GY R++D G+K T+ +G++ E+G H L+ N S + + A
Sbjct: 156 KGYNCRIIDYQEGDEAGIKGVTLYVSGPNCYGFMKAESGVHRLVRISPFNASGKRQTSFA 215
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V V P ++ ++ I + DL ++ + G+ + A I H PTG+ V+
Sbjct: 216 AVFVYPE-IKDEINIDIDEGDLRIDVYRASGAGGQHVNKTSSAVRITHFPTGVVVQ 270
>gi|387816401|ref|YP_005676745.1| peptide chain release factor 2 [Clostridium botulinum H04402 065]
gi|322804442|emb|CBZ01992.1| peptide chain release factor 2 [Clostridium botulinum H04402 065]
Length = 325
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D A +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNAIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++V+P L +++I EDL + + G+ + + A I H+PTGI V+
Sbjct: 175 SFASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQ 232
>gi|187734757|ref|YP_001876869.1| peptide chain release factor 2 [Akkermansia muciniphila ATCC
BAA-835]
gi|187424809|gb|ACD04088.1| peptide chain release factor 2 [Akkermansia muciniphila ATCC
BAA-835]
Length = 329
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + ++ ++ + A L+ + E+ +LA+ EA D L + A
Sbjct: 5 DFWDDQNAARALMAEVNPLKHRMEAFSALKSRLEDIDAAIELAQ-EADDDDLGREAVEEF 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K L +E+ LL GP D VTI AG+ G WA LL MY+RW ++ G+
Sbjct: 64 ARWQKSLADFELLTLLNGPQDQASCYVTIHAGAGGTEACDWASMLLRMYIRWCERRGFSV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++ + G++S T++ + EYA+GYL E G H L+ + + + A +D
Sbjct: 124 TYLESTDGDDAGIRSVTLKVDGEYAYGYLKNERGIHRLVRISPFDSAGKRHTSFASLDAT 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P + S +++I D+DL + S G+ + + A I HIP+G+ V
Sbjct: 184 PE-VSDSINIEILDKDLKVDTYRSGGKGGQNVNKVETAVRITHIPSGVIV 232
>gi|227486641|ref|ZP_03916957.1| peptide chain release factor RF2 [Anaerococcus lactolyticus ATCC
51172]
gi|227235353|gb|EEI85368.1| peptide chain release factor RF2 [Anaerococcus lactolyticus ATCC
51172]
Length = 329
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ K+ V+ L+D + + A D+ ++ K + L E+ D ++
Sbjct: 4 NFWDNSDKAQTVMADLSDKKEDLKAYTDIEDAIKDNKDLIDLVELSDEDESKTLEEVDSN 63
Query: 66 L-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + K L ++ L G D A ++I AG+ G+ WA+ L MY R+ +K G++
Sbjct: 64 LKQIKKSLASLKLKTQLNGEYDKNNAYLSINAGAGGLEATDWADMLFRMYTRYCEKRGFK 123
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
V D + GG+KS T+ + YA+GYL GE G H L+ F + S H + + VD
Sbjct: 124 VEVKDLNNEEAGGIKSVTLHVKGPYAYGYLKGEKGVHRLVRISPFDSQSRRH-TSFSSVD 182
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
V P L+ ++I DL + + G+ + A I HIPTG+
Sbjct: 183 VFPE-LDEDTSIEIDPSDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGV 231
>gi|23335364|ref|ZP_00120601.1| COG1186: Protein chain release factor B [Bifidobacterium longum
DJO10A]
Length = 240
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 4/197 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + ++ +L+ + + L + ++ + + +L E D A
Sbjct: 45 LWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVELGHEEG-DQDSLDEAQSEIG 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LDQ E+ LL G D A VTI++G+ G+ +A+ LL MY+R+ ++ G++ +
Sbjct: 104 EIQKDLDQMEIQTLLDGEYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAK 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D + G+KSAT + + YA+G LS E G H L+ + + + A V+VVP
Sbjct: 164 VMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVP 223
Query: 185 LFLETSP-DLQISDEDL 200
L T D+ +D++L
Sbjct: 224 LVEATDHIDIPYTDDEL 240
>gi|365826152|ref|ZP_09368099.1| peptide chain release factor 2 [Actinomyces graevenitzii C83]
gi|365257301|gb|EHM87356.1| peptide chain release factor 2 [Actinomyces graevenitzii C83]
Length = 372
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAE--EAKLIAQLAEMEAIDYGLFKRAYR 63
+LWDDP + V L+ + + ++ L + E +A + E + A
Sbjct: 43 DLWDDPEAAQVVTSALSHAQAELARVEKLGERIEDLQAMVELAEEEEGDEREAILDEAGA 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +A+ LL MY+RWA++ Y
Sbjct: 103 DLEAISKDLADLEIRTLLSGEYDQRDAVVTIRSGAGGVDAADFAQMLLRMYLRWAERHEY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLDTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ ++I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 223 VIPL-IESTDHIEIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 273
>gi|296134253|ref|YP_003641500.1| hypothetical protein TherJR_2767 [Thermincola potens JR]
gi|296032831|gb|ADG83599.1| hypothetical protein TherJR_2767 [Thermincola potens JR]
Length = 371
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 6/230 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+P ++ +V+ ++ D + L+ + ++ + +L + + K R
Sbjct: 44 FWDNPVEAQKVMREINDLKDTIGLYNTLKRQYDDVYTLWELGMEDDDPDEIEKEVARDIR 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++Q E++ LL D A +++ AG+ G + W + LL MY RWA+++GY+
Sbjct: 104 HLRHNVEQAELTLLLGDKYDKGNAIISLHAGAGGTEAQDWVQMLLRMYTRWAEEKGYKID 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KSA+I E YA+GYL E G H L+ + S + A VDV+P
Sbjct: 164 TLDLLPGDEAGIKSASISIEGPYAYGYLKSEKGVHRLVRISPFDASGRRHTSFASVDVLP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ ++ I DL F S G+ + A I HIPTGI V+
Sbjct: 224 -EVDDETEIVIDPADLRIDTFRSGGAGGQHVNKTDSAVRITHIPTGIVVQ 272
>gi|190149600|ref|YP_001968125.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307245141|ref|ZP_07527233.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307249543|ref|ZP_07531530.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307255961|ref|ZP_07537758.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258552|ref|ZP_07540288.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260795|ref|ZP_07542482.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307262921|ref|ZP_07544544.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914731|gb|ACE60983.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306853921|gb|EFM86134.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306858398|gb|EFM90467.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306861075|gb|EFM93072.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867346|gb|EFM99198.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869521|gb|EFN01311.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871739|gb|EFN03460.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 347
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W+ P K+ + L K +L+ VVN ++ L E+ + + +LA +EA D F A +
Sbjct: 28 IWNTPEKA-QALGKERSALEMVVNTIRTLDQGVEDVEGLIELA-VEAEDEDTFNEAQAEA 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 86 NELEEKLAKLEFQRMFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSAT++ EYAFG+L ETG H L+ F + + H + A V
Sbjct: 146 ELIEVSDGDVAGLKSATVKITGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 204
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I HIP+GI V+
Sbjct: 205 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHIPSGIVVQ 255
>gi|383825061|ref|ZP_09980212.1| peptide chain release factor 2 [Mycobacterium xenopi RIVM700367]
gi|383335463|gb|EID13893.1| peptide chain release factor 2 [Mycobacterium xenopi RIVM700367]
Length = 368
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK-----RA 61
LW+D T++ +V +L+ + + +++LR + ++ ++ +LAE E L + +A
Sbjct: 44 LWEDQTRAQQVTSELSHAQGELRRVEELRRRLDDLPVLYELAEEEGGADTLAEADAELKA 103
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RA ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 104 LRADIEA------MEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
Y V D + G+KSAT YA+G LS E G H L+ + + + A
Sbjct: 158 NYPVEVFDTSYAEEAGIKSATFAIHAPYAYGTLSVEQGTHRLVRLSPFDNQHRRQTSFAE 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 218 VEVLPV-VETTDHIDIPEGDIRVDVYRSSGPGGQSVNTTDSAVRLTHLPTGIVV 270
>gi|347756472|ref|YP_004864035.1| peptide chain release factor 2 (bRF-2) [Candidatus
Chloracidobacterium thermophilum B]
gi|347588989|gb|AEP13518.1| bacterial peptide chain release factor 2 (bRF-2) [Candidatus
Chloracidobacterium thermophilum B]
Length = 344
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 76 EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN 135
E LL GPND A V I++G+ G + WAE LL MY+RW ++ G++ ++D K
Sbjct: 79 ETQMLLSGPNDANNAIVRIQSGAGGTDAQDWAEMLLRMYLRWCERRGFKTSLLDVQPGKE 138
Query: 136 GGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDL 193
G+ SA E +YA+G LS E+G H L+ + S E + A + V P +E ++
Sbjct: 139 AGITSAEFTVEGDYAYGLLSCESGVHRLVRISPFSSSGTRETSFASIFVTPE-VEDDIEI 197
Query: 194 QISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+I+++DL + S G+ ++ A I H+PTGI V
Sbjct: 198 EINEKDLRIDTYRSSGAGGQHVNVTDSAIRITHLPTGIVV 237
>gi|311743767|ref|ZP_07717573.1| peptide chain release factor RF2 [Aeromicrobium marinum DSM 15272]
gi|311312897|gb|EFQ82808.1| peptide chain release factor RF2 [Aeromicrobium marinum DSM 15272]
Length = 371
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L+ V+ + LR + ++ +L+ ++A +E D A
Sbjct: 44 DLWDDQANAQRVTGRLSVLQAEVDKVTGLRQRLDDLELLHEMA-LEEGDDASVADAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ V K ++ E+ LL G D+ A V+I++G+ G+ +A L MY+RWA++ GY
Sbjct: 103 VRVHKSIEALEVRTLLSGEYDMRDALVSIRSGAGGVDAADFALMLQRMYIRWAERHGYTV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KS T + YA+G LS E+G H L+ + + + A ++VV
Sbjct: 163 EIYDVSYAEEAGLKSTTFAVKAPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAAIEVV 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ LE + ++ + DE++ ++ S G+ + A + HIPTG V
Sbjct: 223 PV-LEQTDEIDVPDEEIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGTVV 271
>gi|332297634|ref|YP_004439556.1| Peptide chain release factor 2 [Treponema brennaborense DSM 12168]
gi|332180737|gb|AEE16425.1| Peptide chain release factor 2 [Treponema brennaborense DSM 12168]
Length = 378
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W++P K+ +V+ + + +DL ++A+ + +L ME+ D L A
Sbjct: 44 FWENPAKAEKVMTDIKQLKNRIEPWRDLIAAVDDAEALYELG-MESGDESLEAELKAAYD 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LL G D GA +TI AG+ G WA+ L MYVRWA++ G++
Sbjct: 103 QAQAEYDRLSILNLLSGEVDRNGAFLTIHAGAGGTEACDWAQMLCRMYVRWAERRGFKVE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
VD + GG+KS T++ EYA+GYL E G H L+ F + + H + + V V
Sbjct: 163 TVDMLEAE-GGIKSVTLQISGEYAYGYLKSEAGIHRLVRISPFDSNARRH-TSFSSVYVF 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ L+ + ++ I EDL + + G+ + A H+PTGI V
Sbjct: 221 PV-LDDTIEVDIRPEDLRVDTYRAGGAGGQHVNKTDSAVRFTHLPTGIVV 269
>gi|449435599|ref|XP_004135582.1| PREDICTED: peptide chain release factor 2-like [Cucumis sativus]
Length = 467
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 14/233 (6%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDP + ++ + + +K +NA + R E +I +LA E D L +
Sbjct: 138 DLWDDPAHAGKISREHGSIMSKIKEINAFE--RELLEHIDMI-KLAREEN-DTELESESL 193
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A L + + + E+ LL G ND + ++AG+ G WA ++ MY+ WA + G
Sbjct: 194 NALLTMRRNSREKELEALLSGENDSCSCYIEVQAGAGGTESMDWAAMVMQMYILWAQRRG 253
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+++ + G+K ATI+ + EYAFGY E G H L+ F + H + A
Sbjct: 254 FKVTVMEEMPGEIAGIKRATIKLDGEYAFGYAKSEVGVHRLVRISPFDSNKRRH-TSFAA 312
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
V V+P+ + S +QI++ DL + S G+ + A I HIPTGI
Sbjct: 313 VAVIPITGDGSTHVQINESDLRIERYRSGGAGGQSVNTTDSAVRIVHIPTGIT 365
>gi|320531255|ref|ZP_08032234.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320136522|gb|EFW28491.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 373
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V L+ + + ++ L + E+ + + +LA E + A +
Sbjct: 43 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGEDAAEILAEAEA 102
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L + E+ LL G D A +TI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 103 DLSAISKDLSELEIRTLLSGEYDPRDAVITIRSGAGGVDAADFAEMLLRMYTRWAERHEY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 163 PVKVLNTSYAEEAGLKSVTFEIHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 222
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 223 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 273
>gi|87200328|ref|YP_497585.1| peptide chain release factor 2 [Novosphingobium aromaticivorans DSM
12444]
gi|87136009|gb|ABD26751.1| bacterial peptide chain release factor 2 (bRF-2) [Novosphingobium
aromaticivorans DSM 12444]
Length = 375
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 21/241 (8%)
Query: 2 VRNYNLWDDPTKSNEVLV---KLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA----ID 54
V + LWDDP K+ EV+ +L S+ VN + A E +L EME I+
Sbjct: 39 VEDPKLWDDPKKAEEVMRERRRLEASIGTVNQIGQEMADAIE---FVELGEMEGDEDTIN 95
Query: 55 YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
GL A A+L ++ D ++ LL G D A + + AG+ G + WAE L MY
Sbjct: 96 EGL---ATLAAL--AERADNDKVQALLAGEADANNAFLEVHAGAGGTESQDWAEMLQRMY 150
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
RWA++ GY+ +VD + G+KSAT+ + E A+GY E+G H L+ + S
Sbjct: 151 TRWAERHGYKVELVDYHAGEAAGIKSATLLIKGENAYGYAKTESGVHRLVRISPYDSSAR 210
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ + V V P ++ + +++I+ DL + + G+ + A I H+PTGI
Sbjct: 211 RHTSFSSVWVYP-EIDDNIEVEINPADLKIDTYRASGAGGQHVNTTDSAVRITHVPTGII 269
Query: 230 V 230
V
Sbjct: 270 V 270
>gi|387773968|ref|ZP_10129248.1| peptide chain release factor 2 [Haemophilus parahaemolyticus HK385]
gi|386903055|gb|EIJ67875.1| peptide chain release factor 2 [Haemophilus parahaemolyticus HK385]
Length = 355
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W+ P K+ + L K +L+ VVN +K L E+ + + +LA +EA D F A +
Sbjct: 36 IWNTPEKA-QALGKERSALEMVVNTIKALDQGIEDVEGLIELA-VEAEDEDTFNEAQAEA 93
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 94 VELEAKLAKLEFQRMFSGQHDAPDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKA 153
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A V
Sbjct: 154 ELIEVSDGDVAGLKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 212
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 213 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 263
>gi|343924877|ref|ZP_08764414.1| peptide chain release factor 2 [Gordonia alkanivorans NBRC 16433]
gi|343765223|dbj|GAA11340.1| peptide chain release factor 2 [Gordonia alkanivorans NBRC 16433]
Length = 373
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
+LW+D + +V +L+ + + + +LR + ++ + +LAE E + A
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVSELRQRLDDLPVHYELAESEEGEDRAAALADADQ 104
Query: 63 -RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RA L ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA+++
Sbjct: 105 ERAGLRAD--IEAMEVKTMLAGEYDSREAVVNIRSGAGGVDAADWAQMLMRMYIRWAEQK 162
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
GY V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 163 GYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFA 221
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVEVLPV-VETTDHIDVDENDIKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 275
>gi|90020863|ref|YP_526690.1| peptide chain release factor 2 [Saccharophagus degradans 2-40]
gi|89950463|gb|ABD80478.1| bacterial peptide chain release factor 2 (bRF-2) [Saccharophagus
degradans 2-40]
Length = 347
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 9/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDDP ++ + + + VV ++ L + + + ++A +E D F +
Sbjct: 27 DVWDDPARAQALGSERSSLELVVETIETLENGVADCRELLEMA-IEESDEDSFLEICSEA 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L E ++ G D A + I+AGS G + WAE LL MY+RW + +G++
Sbjct: 86 DRLEAHLATLEFRRMFSGEMDPNNAYLDIQAGSGGTEAQDWAEMLLRMYLRWGEDKGFKT 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+ + G+KSATI FE EYAFG+L ETG H L+ F +G+ H + + V V
Sbjct: 146 TLEEASAGDVAGIKSATIRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFSSVFV 204
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ + D++I+ D+ + + G+ + A + H PTGI V+
Sbjct: 205 SPE-IDDNIDIEINKADVREDTYRASGAGGQHVNKTDSAVRLTHAPTGIVVQ 255
>gi|451943524|ref|YP_007464160.1| peptide chain release factor 2 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902911|gb|AGF71798.1| peptide chain release factor 2 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 369
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L DLR + + ++ +LAE E RA
Sbjct: 43 SLWDDPDHAQKVTSELSSVQGRLRKLSDLRQRLSDLPVMYELAEEEEG-GEELAEEERA- 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ ++ E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 101 -DLRAEIEALEVKTMLSGDYDPREALINIRSGAGGVDAADWAEMLMRMYTRWAEKHGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DVYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + + D D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEQTDHIDVPDNDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>gi|337288092|ref|YP_004627564.1| hypothetical protein TOPB45_0534 [Thermodesulfobacterium sp. OPB45]
gi|334901830|gb|AEH22636.1| hypothetical protein TOPB45_0534 [Thermodesulfobacterium geofontis
OPF15]
Length = 378
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 76 EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN 135
E LL G D A ++I AG+ G + WA LL MYV+WA+K+GY+ ++VD +
Sbjct: 119 ETKLLLSGEYDSSSAILSIHAGTGGTDAQDWASILLRMYVKWAEKKGYKVKIVDILPGEE 178
Query: 136 GGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDL 193
G+K+A + E E A+GYL GE G H LI N + + A V V+P +E ++
Sbjct: 179 AGIKNAVLLIEGEKAYGYLKGEKGIHRLIRISPFNANSKRHTSFASVTVIPQ-IEEDIEV 237
Query: 194 QISDEDLLFSSPSLP---GERQSIAKPAACIQHIPTGIAV 230
+I EDL + G+ + + A I HIPTGI V
Sbjct: 238 EIRPEDLKIETMRASGHGGQHVNKTETAVRITHIPTGITV 277
>gi|298528152|ref|ZP_07015556.1| hypothetical protein Dthio_PD3135 [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511804|gb|EFI35706.1| hypothetical protein Dthio_PD3135 [Desulfonatronospira
thiodismutans ASO3-1]
Length = 368
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 8 WDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLD 67
WD P K +L + + + V+ + L EE + + A+ + G +A SL+
Sbjct: 48 WDSPEKLTPILKEKSGLEESVSKYEQLHSLQEEVREWLEFADNDQ--SGEVLQALEDSLE 105
Query: 68 -VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+S+ L++ E+ LL G +D A V+I G+ G + W E LL MY RWA+ +G++
Sbjct: 106 TLSRQLEKVELEALLSGKDDNNPAIVSIHPGAGGTEAQDWVEMLLRMYTRWAESKGFKLD 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ EYA+G L E G H LI + S + A VDV P
Sbjct: 166 YLDYLPGDEAGVKSVTLQVTGEYAYGLLKSERGIHRLIRISPFDASGRRHTSFASVDVYP 225
Query: 185 LFLETSPD--LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ S D +++ +ED+ +F + G+ + A I H+PTGI V+
Sbjct: 226 ---QVSDDINIEVKEEDMRVDVFKASGPGGQHVNKTSSAIRITHMPTGIVVQ 274
>gi|420206815|ref|ZP_14712320.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM008]
gi|394276918|gb|EJE21251.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM008]
Length = 333
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|225851497|ref|YP_002731731.1| peptide chain release factor 2 [Persephonella marina EX-H1]
gi|225646418|gb|ACO04604.1| peptide chain release factor 2 [Persephonella marina EX-H1]
Length = 370
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D K+ E+ K + ++ + K + K +L E+E D R
Sbjct: 43 DFWNDTKKAQEISSKRNAIANKIQEIESVEKKINDIKEFIELLELE-YDKETEDEIKREI 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K + + E + LL D++ A VT++AGS G+ W E LL MY+RWA+K G+
Sbjct: 102 EALDKEITKLETASLLSEEYDMKNAIVTLQAGSGGVEACDWTEMLLRMYLRWAEKNGFDV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD G+KSAT + YA+GYL GE G H L+ + + + + V V+
Sbjct: 162 EMVDYQPDDVAGIKSATFIVKGPYAYGYLKGEQGVHRLVRISPFDANKRRHTSFSAVSVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P + ++I +EDL F + G+ + A I HIPTGI V
Sbjct: 222 PE-IGDEVKVEIKEEDLRIDTFRASGAGGQHVNTTDSAVRIVHIPTGITV 270
>gi|418326027|ref|ZP_12937223.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU071]
gi|420162884|ref|ZP_14669639.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM095]
gi|420167326|ref|ZP_14673987.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM087]
gi|420185951|ref|ZP_14692027.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM040]
gi|365226938|gb|EHM68149.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU071]
gi|394235881|gb|EJD81431.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM095]
gi|394238955|gb|EJD84412.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM087]
gi|394253043|gb|EJD98059.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM040]
Length = 333
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|417798692|ref|ZP_12445852.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21310]
gi|421149526|ref|ZP_15609184.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|334275553|gb|EGL93842.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21310]
gi|394330443|gb|EJE56535.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
Length = 331
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVIYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|145297980|ref|YP_001140821.1| peptide chain release factor 2 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|166223622|sp|A4SJK1.1|RF2_AERS4 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|142850752|gb|ABO89073.1| peptide chain release factor 2 [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 365
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ + + VV + L AE+ +++ LA +E D F A A
Sbjct: 45 DVWNEPERAQALGKERVSLENVVGTIDVLTQGAEDVEMLVSLA-VEGEDEDTFNEAV-AE 102
Query: 66 LDV--SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
DV +KL+D E ++ G +D + I++GS G + WA +L MY+RW D GY
Sbjct: 103 ADVLETKLVD-LEFRRMFSGQHDGSDCYIDIQSGSGGTEAQDWANMVLRMYLRWGDAHGY 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +++ G+KSAT++F EYAFG+L ETG H L+ F +G H + V
Sbjct: 162 KPELIELSDGDVAGIKSATVKFTGEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFCSV 220
Query: 181 DVVPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P + DL+I ++ + G+ + + A I HIPTG+ V+
Sbjct: 221 FVYPEIDDDIDIEINPADLRID----VYRASGAGGQHVNRTESAVRITHIPTGVVVQ 273
>gi|383764407|ref|YP_005443389.1| peptide chain release factor 2 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384675|dbj|BAM01492.1| peptide chain release factor 2 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 350
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP + +++ +L+ V + L +A +A + Q+AE D L +
Sbjct: 28 FWDDPQSAQKIMQELSALRDKVEVWEGLARRAHDALELYQMAE---DDPALLTELEAEAE 84
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ LD+ E + L GP D A ++I AG+ G + WA+ LL MY+RWA+K G++
Sbjct: 85 ALEAELDEREFTLALSGPYDSGSAILSIHAGAGGTEAQDWAQMLLRMYLRWAEKHGFKTF 144
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D+ + G+KS T+E A+G L E G H L+ + + + A V+V+P
Sbjct: 145 ITDETEGEEAGIKSVTVEVNGPNAYGLLKAEKGVHRLVRLSPFDANNRRHTSFAKVEVMP 204
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ L+ ++QI +D+ +F S G+ + A I+H+PTGI V
Sbjct: 205 V-LDEDIEIQIDPKDIEVEVFLSSGAGGQNVQKNQTAVRIRHLPTGIVV 252
>gi|359420531|ref|ZP_09212466.1| peptide chain release factor 2 [Gordonia araii NBRC 100433]
gi|358243528|dbj|GAB10535.1| peptide chain release factor 2 [Gordonia araii NBRC 100433]
Length = 374
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA----Y 62
LW+D + +V +L+ + + + +LR + ++ + +LAE E D A
Sbjct: 44 LWNDQDHAQKVTSELSHAQAEMRRVSELRQRLDDLPVHYELAEAEEGDDRASALADADTE 103
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RASL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY RWA+ G
Sbjct: 104 RASLRAD--IEAMEVKTMLAGEYDQRDALVNIRSGAGGVDAADWAQMLMRMYTRWAEAHG 161
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT + Y +G LS E G H L+ + + + A V
Sbjct: 162 YGVEVYDTSYAEEAGIKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + I + DL ++ S G+ + A + H+PTGI V
Sbjct: 222 EVLPV-VETTDHIDIDENDLKVDVYRSSGPGGQSVNTTDSAVRLTHLPTGIVV 273
>gi|334139368|ref|ZP_08512760.1| peptide chain release factor 2 [Paenibacillus sp. HGF7]
gi|333602181|gb|EGL13612.1| peptide chain release factor 2 [Paenibacillus sp. HGF7]
Length = 333
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +++ +L VV+ + L + E+ ++AQLA+ E D +
Sbjct: 7 DFWDDNEKAQKIIGELNAIKSVVDQFQALNNEYEDLDVMAQLADEEN-DEDMAAELADGL 65
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V + L+ +++ LL P D A + + G+ G + WAE LL MY RWA+K ++
Sbjct: 66 KGVLRKLEDFQLQLLLNQPYDRLNAILELHPGAGGTESQDWAEMLLRMYRRWAEKRDFKV 125
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D GVKS T+ + A+GYL E G H L+ F H + ++C DV
Sbjct: 126 EVLDYLPGDEAGVKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-DV 184
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VP +E ++ I EDL + + G+ + A I H+PTG+ V
Sbjct: 185 VP-EIEDDVEVDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGVVV 234
>gi|387618163|ref|YP_006121185.1| peptide chain release factor 2 [Escherichia coli O83:H1 str. NRG
857C]
gi|312947424|gb|ADR28251.1| peptide chain release factor 2 [Escherichia coli O83:H1 str. NRG
857C]
Length = 357
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 37 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 93
Query: 65 SLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LDV + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 94 ELDVLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 153
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 154 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 212
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 213 FVYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 265
>gi|400293518|ref|ZP_10795386.1| peptide chain release factor 2 [Actinomyces naeslundii str. Howell
279]
gi|399901387|gb|EJN84274.1| peptide chain release factor 2 [Actinomyces naeslundii str. Howell
279]
Length = 405
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V L+ + + ++ L + E+ + + +LA E + A +
Sbjct: 75 DLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELAGEEEGEDAAEILAEAEA 134
Query: 66 L--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+SK L E+ LL G D A VTI++G+ G+ +AE LL MY RWA++ Y
Sbjct: 135 DLSAISKDLSDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADFAEMLLRMYTRWAERHEY 194
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V++ + G+KS T E YA+G LS E G H L+ + + + A V+
Sbjct: 195 SVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRISPFDNQGRRQTSFAAVE 254
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E++ + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 255 VIPL-IESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVV 305
>gi|386830396|ref|YP_006237050.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|385195788|emb|CCG15397.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 369
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ + +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVIYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>gi|449523704|ref|XP_004168863.1| PREDICTED: peptide chain release factor 2-like [Cucumis sativus]
Length = 472
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 14/233 (6%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LWDDP + ++ + + +K +NA + R E +I +LA E D L +
Sbjct: 143 DLWDDPAHAGKISREHGSIMSKIKEINAFE--RELLEHIDMI-KLAREEN-DTELESESL 198
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A L + + + E+ LL G ND + ++AG+ G WA ++ MY+ WA + G
Sbjct: 199 NALLTMRRNSREKELEALLSGENDSCSCYIEVQAGAGGTESMDWAAMVMQMYILWAQRRG 258
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+++ + G+K ATI+ + EYAFGY E G H L+ F + H + A
Sbjct: 259 FKVTVMEEMPGEIAGIKRATIKLDGEYAFGYAKSEVGVHRLVRISPFDSNKRRH-TSFAA 317
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
V V+P+ + S +QI++ DL + S G+ + A I HIPTGI
Sbjct: 318 VAVIPITGDGSTHVQINESDLRIERYRSGGAGGQSVNTTDSAVRIVHIPTGIT 370
>gi|418623705|ref|ZP_13186407.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU125]
gi|374830015|gb|EHR93806.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU125]
Length = 333
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|294102045|ref|YP_003553903.1| hypothetical protein [Aminobacterium colombiense DSM 12261]
gi|293617025|gb|ADE57179.1| hypothetical protein Amico_1055 [Aminobacterium colombiense DSM
12261]
Length = 368
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 14/233 (6%)
Query: 6 NLW--DDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
+ W D+ K + L + D L ++ K + E+ ++I ++ + E D L K +
Sbjct: 44 DFWGSDEARKVTQELARYQDKL---DSWKKIAEDYEDLEIIEEMLKEEE-DRELQKDFEQ 99
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ + K +++ ++ +LL D A V++ AGS G+ + WAE L MY RW ++ +
Sbjct: 100 KAFSLKKEIERQQLIELLSEDYDQGNAIVSVHAGSGGLDSQDWAEMLYRMYARWMEQNDF 159
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
R +V+D GG+ + T+ E YA+GYL E G H L+ F + H + A V
Sbjct: 160 RVKVLDLIKDSEGGISNVTLLVEGSYAYGYLKSEKGVHRLVRISPFDSAGRRH-TSFASV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
D+VP E D++I EDL + S G+ ++ A I H P+GI V
Sbjct: 219 DIVPELPE-DEDIEIRTEDLRIDTYRSSGAGGQHVNMTDSAVRITHFPSGIVV 270
>gi|357235903|ref|ZP_09123246.1| peptide chain release factor 2 [Streptococcus criceti HS-6]
gi|356883885|gb|EHI74085.1| peptide chain release factor 2 [Streptococcus criceti HS-6]
Length = 326
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 17/237 (7%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ WDD K+++ L +L + N +++L +EE +L ++ E +A +
Sbjct: 5 DFWDDNVAAQKTSQELNELKQTYDTFNQMEEL---SEETELYLEMLEEDASVQEDLEDTL 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -AKLD--KMMASYEMTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYQRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE +A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+V+P L+ + D+ I DED+ F S G+ + + HIPTGI V T
Sbjct: 178 VEVMPE-LDDTIDVDIRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVAST 233
>gi|403253475|ref|ZP_10919776.1| peptide chain release factor 2 [Thermotoga sp. EMP]
gi|402811009|gb|EJX25497.1| peptide chain release factor 2 [Thermotoga sp. EMP]
Length = 367
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWNDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVELQPGEEAGIKDATILIKGEYAYGYLKYESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 221 PE-IDDDVDIEIKPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVV 269
>gi|418629644|ref|ZP_13192140.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU127]
gi|420195445|ref|ZP_14701237.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM021]
gi|374833175|gb|EHR96870.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU127]
gi|394263240|gb|EJE07979.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM021]
Length = 333
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|226328243|ref|ZP_03803761.1| hypothetical protein PROPEN_02136 [Proteus penneri ATCC 35198]
gi|225202976|gb|EEG85330.1| peptide chain release factor 2 [Proteus penneri ATCC 35198]
Length = 347
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 125/234 (53%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ +V + L E+ + +LA +EA D F A A
Sbjct: 27 DVWNEPERA-QALGKERSSLEAIVETIDQLDQGLEDVSGLLELA-VEADDEETFNEAI-A 83
Query: 65 SLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LDV +K L+Q E ++ G D + ++AGS G + WA L+ MY+RWA+ G+
Sbjct: 84 ELDVLNKKLEQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQDWASMLMRMYLRWAESRGF 143
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ G+KSATI+ EYA+G+L ETG H L+ F +G H + +
Sbjct: 144 KTEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 202
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P ++ + D++I+ DL ++ + G+ + + A I H+PTG+ +
Sbjct: 203 FIYPE-VDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHVPTGLVTQ 255
>gi|381394768|ref|ZP_09920480.1| peptide chain release factor 2 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329735|dbj|GAB55613.1| peptide chain release factor 2 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 299
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 28 VNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87
+N +++L +++ + + +LA +EA D F A + + K L+ E ++ GPND
Sbjct: 1 MNTIQNLHQGSQDIEGLLELA-IEADDQETFDEAQQELNSLIKDLEALEFRRMFSGPNDA 59
Query: 88 EGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147
+ I++GS G + WA+ LL MY+RW +++G++ +++ G+KSATI+F
Sbjct: 60 NNGYIDIQSGSGGTEAQDWADMLLRMYLRWGERQGFKTELIELSDGDVAGIKSATIKFTG 119
Query: 148 EYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETS------PDLQISDE 198
+YAFG+L ETG H L+ F +GS H + A P + DL+I
Sbjct: 120 DYAFGWLRTETGVHRLVRKSPFDSGSRRH-TSFASAFAYPEIDDDIEIDINPADLRID-- 176
Query: 199 DLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ + G+ + A I H+PT V+
Sbjct: 177 --TYRASGAGGQHVNRTDSAVRITHLPTNTVVQ 207
>gi|255320321|ref|ZP_05361506.1| peptide chain release factor 2 [Acinetobacter radioresistens SK82]
gi|421856199|ref|ZP_16288568.1| peptide chain release factor 2 [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|255302760|gb|EET81992.1| peptide chain release factor 2 [Acinetobacter radioresistens SK82]
gi|403188449|dbj|GAB74769.1| peptide chain release factor 2 [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 351
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D +++ + + + V+N L+ L + E+A+ + LA +EA D L
Sbjct: 31 SIWNDQSRAQAMAKEKGELENVINVLEGLSTQLEDAQAMLDLA-VEADDESLLADVQAEL 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ L + E ++ P D V I+AGS G + WA LL MY+RW ++ G++
Sbjct: 90 SSAEEALAKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKA 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++++ G+KSATI E EYA+G+L E+G H L+ F +G+ H + + V V
Sbjct: 150 ELMEESDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRH-TSFSAVFV 208
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + ++ I+ D+ + + G+ + A + H+PTGI V
Sbjct: 209 SP-EVDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHMPTGIVV 258
>gi|282905164|ref|ZP_06313021.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282331571|gb|EFB61083.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
Btn1260]
Length = 331
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E + + +
Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFEGEMKED 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 60 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 234
>gi|46580270|ref|YP_011078.1| peptide chain release factor 2, programmed frameshift, partial
[Desulfovibrio vulgaris str. Hildenborough]
gi|387153304|ref|YP_005702240.1| hypothetical protein Deval_1446 [Desulfovibrio vulgaris RCH1]
gi|46449687|gb|AAS96337.1| peptide chain release factor 2, programmed frameshift
[Desulfovibrio vulgaris str. Hildenborough]
gi|311233748|gb|ADP86602.1| hypothetical protein Deval_1446 [Desulfovibrio vulgaris RCH1]
Length = 371
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 110/234 (47%), Gaps = 17/234 (7%)
Query: 8 WDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
W++P K VL + L + + AL+ R E L+A+ E L ++ R
Sbjct: 47 WNNPEKLTPVLQEKSMLEGEINRLEALETCRNDVSEWLLLAEEDESAEALESLEEQIIR- 105
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ +L+++ EM+ LL G D A + I G+ G + WAE LL MY+RWAD GY+
Sbjct: 106 ---LEQLIEETEMNLLLSGKEDRFAALLEIHPGAGGTEAQDWAEMLLRMYLRWADTHGYK 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+D G+KS T+ A+G L GE G H LI + S + A VDV
Sbjct: 163 TEYLDYLDGDEAGIKSVTLRIAGPNAYGLLKGERGIHRLIRISPFDASGRRHTSFASVDV 222
Query: 183 VPLFLETSPD--LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+P + D ++I D DL +F S G+ + A + HIPTGI +
Sbjct: 223 IP---DVGQDIKIEIKDTDLRIDVFRSSGPGGQSVNTTSSAVRVTHIPTGIVAQ 273
>gi|291459037|ref|ZP_06598427.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418291|gb|EFE92010.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 078
str. F0262]
Length = 378
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 11/237 (4%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLF 58
M+ + W DP ++N + ++ + N L+ + + I L EM E D +
Sbjct: 40 MMEEPDFWTDPERANRLST---ENHHLKNELESYQSLKQSYDDIGALIEMGVEEGDESVI 96
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ S+ LD LL G D A + + AG+ G WA L MY RWA
Sbjct: 97 PEIRELLSEFSEKLDSMSTQLLLSGEYDAMNAILRLNAGAGGTEANDWAGMLYRMYTRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ G+ +++D + G+KS T+E + +YA+GYL E+G H L+ N + +
Sbjct: 157 ERRGFGIKILDYLEGEEAGIKSVTMEIDGDYAYGYLRSESGIHRLVRISPFNAQGKRQTS 216
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P +ET D+ I +ED+ +F S G+ + A + HIPTG V
Sbjct: 217 FVSCDVMP-DIETDIDVDIREEDIKMEVFRSSGAGGQHINKTSSAVRLIHIPTGFVV 272
>gi|170759975|ref|YP_001785502.1| peptide chain release factor 2 [Clostridium botulinum A3 str. Loch
Maree]
gi|169406964|gb|ACA55375.1| peptide chain release factor 2 [Clostridium botulinum A3 str. Loch
Maree]
Length = 327
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W++ ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNNIKEAQKITSEEKYLKDKLIKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL GE G H L+ N + +
Sbjct: 115 AEKEGFSIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++V+P L +++I EDL + + G+ + + A I HIPTGI V+
Sbjct: 175 SFASIEVLPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQ 232
>gi|158425248|ref|YP_001526540.1| peptide chain release factor 2 [Azorhizobium caulinodans ORS 571]
gi|158332137|dbj|BAF89622.1| peptide chain release factor 2 [Azorhizobium caulinodans ORS 571]
Length = 376
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 15/233 (6%)
Query: 7 LWDDPTKSNEVL---VKLADSLKVVNAL-KDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
LWDDP ++ +++ L D+L ++ + +DL E + +L E E D + A
Sbjct: 44 LWDDPERAQKIMQERTSLEDALNAIDRITRDLTDNIE----LIELGEAEG-DESVITEAA 98
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A + L + E+ LL G D + + AG+ G + WAE LL MY RW ++ G
Sbjct: 99 GALDALKAELARRELDALLSGEADSNDTYLEVHAGAGGTDSQDWAEMLLRMYRRWCERHG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
++ +VD+ + G+KSATI + A+G+L E G H L+ + + + + A +
Sbjct: 159 FKVELVDESAGEQAGLKSATIIVKGHNAYGWLKTEAGVHRLVRISPFDSNARRQTSFASI 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV P+ ++ ++I++ D+ S G+ + + A + HIPTGIAV
Sbjct: 219 DVYPV-IDDRIVVEINESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGIAV 270
>gi|418656280|ref|ZP_13218094.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-105]
gi|443640229|ref|ZP_21124220.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21196]
gi|375034002|gb|EHS27180.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-105]
gi|443405370|gb|ELS63973.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
21196]
Length = 330
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 IYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|357022173|ref|ZP_09084402.1| peptide chain release factor 2 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356478095|gb|EHI11234.1| peptide chain release factor 2 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 375
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + V +L+ + + +++LR + ++ ++ +LA EA + G L
Sbjct: 44 LWNDQANAQRVTSELSHAQGELRRVEELRRRVDDLPVLYELAAEEAGEDGDSLAEADEEL 103
Query: 67 DVSKL-LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K ++ E+ LL G D A VTI+AG+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 EALKAEIEALEVRTLLSGEYDEREALVTIRAGAGGVDAADWAEMLMRMYIRWAEKHGYPV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT + +A+G LS E G H L+ F N S + + A V+V
Sbjct: 164 EVYDISYAEEAGIKSATFAVKAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAEVEV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 223 LPV-VETTDHIDIPESDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 272
>gi|406977382|gb|EKD99553.1| hypothetical protein ACD_22C00234G0012 [uncultured bacterium]
Length = 334
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 6/173 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D K L + E L GP+D A V+I AG G W + LL MYV +A+++G++
Sbjct: 75 DFEKELKKLEQKTFLGGPHDKSNALVSIHAGQGGTEAMDWTQMLLRMYVMYAERKGWKTY 134
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ K + G+K+ TIE E YA+G+L E G H L+ N + + + A V+V+P
Sbjct: 135 EISKTPGEEAGLKTITIEVEGYYAYGFLKNEAGVHRLVRQSPFNANDLRQTSFALVEVIP 194
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
ET +++I DED+ F S G+ + A I+H PTGI V T
Sbjct: 195 EVDETV-NIEIKDEDIEFEAFRSGGHGGQNVNKVSTAVRIKHKPTGIVVENQT 246
>gi|416124887|ref|ZP_11595682.1| peptide chain release factor 2 [Staphylococcus epidermidis FRI909]
gi|319401169|gb|EFV89384.1| peptide chain release factor 2 [Staphylococcus epidermidis FRI909]
Length = 332
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +V+ L ++ +L + E D + K
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQ-EEYDEDMKKELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|385811987|ref|YP_005848378.1| peptide chain release factor RF2 [Lactobacillus fermentum CECT
5716]
gi|299782886|gb|ADJ40884.1| Peptide chain release factor RF2 [Lactobacillus fermentum CECT
5716]
Length = 332
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 19/236 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 5 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 58
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 59 LDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 119 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 177
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI
Sbjct: 178 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVT 232
>gi|33151768|ref|NP_873121.1| peptide chain release factor 2 [Haemophilus ducreyi 35000HP]
gi|33147989|gb|AAP95510.1| peptide chain release factor 2 [Haemophilus ducreyi 35000HP]
Length = 351
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W+ P K+ + L K +L+ VVN + L E+ + + +LA +EA D A +
Sbjct: 32 IWNTPEKA-QTLGKERSTLEMVVNTINALIQGIEDVEALIELA-VEAEDEQTLYEAQIEA 89
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ L + E ++ GP D + ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 90 DELATKLAKLEFQRMFSGPYDATDCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 149
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A V
Sbjct: 150 ELIEVSDGDVAGLKSATIRITGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 208
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ D++I+ DL ++ + G+ + + A I H+P+GI V+
Sbjct: 209 YPE-VDDDVDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQ 259
>gi|157363562|ref|YP_001470329.1| peptide chain release factor 2 [Thermotoga lettingae TMO]
gi|166977374|sp|A8F531.1|RF2_THELT RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|157314166|gb|ABV33265.1| peptide chain release factor 2 [Thermotoga lettingae TMO]
Length = 367
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 9/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W D K+ E+ K+ ++++ + ++ E+ + +L+E D G+ + +
Sbjct: 45 IWKDQRKAGEISKKVRRIKELLSDISEIERNFEDIDVGIELSEE---DPGIAQDIEKIVQ 101
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+V K + ++++ +L P D A ++I G+ G WA+ LL MY+RWA+++G+
Sbjct: 102 EVEKNIRRFQLELILNDPLDQNNAYLSIHPGAGGTESHDWAQMLLRMYMRWAERKGFIVE 161
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSATI + EYA+GYL E G H L+ + + + A V+VVP
Sbjct: 162 LLDFQPGEEAGLKSATILVKGEYAYGYLKHERGVHRLVRISPFDAAKRRHTSFASVNVVP 221
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ D++I ED+ F + G+ + A I H+PTGI V
Sbjct: 222 E-ISDDIDVEIKPEDIRIDTFRASGHGGQYVNRTDSAVRITHLPTGIVV 269
>gi|83814103|ref|YP_445897.1| peptide chain release factor 2 [Salinibacter ruber DSM 13855]
gi|83755497|gb|ABC43610.1| peptide chain release factor 2 [Salinibacter ruber DSM 13855]
Length = 378
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 12/239 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ E+ ++A + + A +D++ +AE+ + + L+E E D A
Sbjct: 43 DFWDDPDRAREIEKRIAREEEWIEAWEDVKEQAEDIETLQLLSEEEGEDMSDEIDAEARK 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L+ + LD+ E+ LL P+D A V I G+ G + WAE LL MY+RWA+ + Y
Sbjct: 103 LE--QKLDRLELESLLDDPDDERDAIVEINPGAGGTESQDWAEMLLRMYMRWAEDQDYDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+V + + G+KSAT+ + +A+G L ETG H L+ F S H + A V V
Sbjct: 161 ELVHQQPGEEAGIKSATLNVQGRHAYGRLKSETGVHRLVRISPFDADSRRH-TSFASVFV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTTLQIR 238
P ++ S + +S+ ++ F S G Q + K ++ I TG G +R
Sbjct: 220 YP-EVDDSIGVDLSEGEIELQTFRSGGKGG--QHVNKVETGVRLIWTGTLSNGEETTVR 275
>gi|383828737|ref|ZP_09983826.1| peptide chain release factor 2 [Saccharomonospora xinjiangensis
XJ-54]
gi|383461390|gb|EID53480.1| peptide chain release factor 2 [Saccharomonospora xinjiangensis
XJ-54]
Length = 368
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+DP + +V +L+ + + +LR + ++ ++ +LAE E D
Sbjct: 43 DLWNDPETAQKVTSQLSHKQASLRKVTELRQRVDDLTVLHELAEAEG-DAASRSEVETEF 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+S+ +D E+ LL G D A VTI++ + G+ WAE LL MY+RWA++ Y
Sbjct: 102 AGLSRDIDALEVRTLLSGEYDERNAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHDYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPN-----GSFPHEATL 177
+V D + G++SAT + Y +G LS E G H L+ F N SF H L
Sbjct: 162 QVYDISYAEEAGIRSATFKVSGPYLYGTLSVEQGTHRLVRISPFDNQSRRQTSFAHVEVL 221
Query: 178 ACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+ V D+++ ++ S G+ + A I H+PTGI V
Sbjct: 222 PEVEEVDHVEVPEKDIRVD----VYRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>gi|258507895|ref|YP_003170646.1| peptide chain release factor 2 [Lactobacillus rhamnosus GG]
gi|385827576|ref|YP_005865348.1| protein chain release factor B [Lactobacillus rhamnosus GG]
gi|257147822|emb|CAR86795.1| Peptide chain release factor 2 [Lactobacillus rhamnosus GG]
gi|259649221|dbj|BAI41383.1| protein chain release factor B [Lactobacillus rhamnosus GG]
Length = 332
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 110/241 (45%), Gaps = 31/241 (12%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL--------- 57
WDD + KV++A L+ K + + A E+E ++ GL
Sbjct: 6 FWDDSEAAQ----------KVIDANNKLKEKHD--RFYALENELEDLEAGLELLQDEPDP 53
Query: 58 -FKRAYRASL-DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
+R L D+ + LDQYEM LL GP D A + I G+ G + W L+ MY
Sbjct: 54 DLQREEETKLKDLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQ 113
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFP 172
RWAD+ G++ V D G+KS T+ E A+G L E G H L+ F +
Sbjct: 114 RWADQNGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRR 173
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
H + A VDV+P L+ S ++ I ED+ +F S G+ + A + H+PTGI
Sbjct: 174 H-TSFASVDVMPE-LDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIV 231
Query: 230 V 230
Sbjct: 232 T 232
>gi|445461523|ref|ZP_21448782.1| peptide chain release factor 2 [Acinetobacter baumannii OIFC047]
gi|444771247|gb|ELW95378.1| peptide chain release factor 2 [Acinetobacter baumannii OIFC047]
Length = 328
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+D ++ + + + V+N L L + E+AK + LA +EA D L +
Sbjct: 9 IWNDQNRAQAMAKEKGELENVINVLDGLSTQLEDAKAMLDLA-VEADDESLLEDVQSELS 67
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L + E ++ P D V I+AGS G + WA LL MY+RW ++ G++
Sbjct: 68 TAEEELAKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAE 127
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ G+KSATI E EYA+G+L E+G H L+ F +G+ H + + V +
Sbjct: 128 LMEVSDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRH-TSFSAVFIS 186
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + ++ I+ D+ + + G+ + A + HIPTGI V
Sbjct: 187 P-EVDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVV 235
>gi|260663162|ref|ZP_05864054.1| peptide chain release factor 2 [Lactobacillus fermentum 28-3-CHN]
gi|260552354|gb|EEX25405.1| peptide chain release factor 2 [Lactobacillus fermentum 28-3-CHN]
Length = 332
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 19/236 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 5 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 58
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 59 LDNNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 118
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 119 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 177
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI
Sbjct: 178 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVT 232
>gi|379710390|ref|YP_005265595.1| Peptide chain release factor 2 (RF-2) [Nocardia cyriacigeorgica
GUH-2]
gi|374847889|emb|CCF64961.1| Peptide chain release factor 2 (RF-2) [Nocardia cyriacigeorgica
GUH-2]
Length = 374
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 30/243 (12%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEE-------------AKLIAQLAEMEA 52
+LW+D + +V +L+ + + +++LR + E+ + A LAE +A
Sbjct: 46 DLWNDQDHAQQVTSELSHAQGELRRVEELRQRLEDLPVLYELAEGEEGEAMTAALAEADA 105
Query: 53 IDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
RA+L ++ E+ LL G D A V I++G+ G+ WAE L+
Sbjct: 106 ---------ERAALHAD--VEAMEVRTLLSGEYDKREALVNIRSGAGGVDAADWAEMLMR 154
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGS 170
MY+RWAD+ Y V D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 155 MYIRWADRHKYPVEVYDTSYAEEAGIKSATFAVKSPYAYGTLSVEMGTHRLVRISPFDNQ 214
Query: 171 FPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTG 227
+ + A V+V+P+ +ET+ ++I + ++ ++ S G+ + A + HIPTG
Sbjct: 215 GRRQTSFAEVEVLPV-VETTDHIEIPEGEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTG 273
Query: 228 IAV 230
I V
Sbjct: 274 IVV 276
>gi|188590075|ref|YP_001919915.1| peptide chain release factor 2 [Clostridium botulinum E3 str.
Alaska E43]
gi|188500356|gb|ACD53492.1| peptide chain release factor 2 [Clostridium botulinum E3 str.
Alaska E43]
Length = 344
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 18/235 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEMEAIDYGLFKRAYRA 64
W+D ++ E+ +S ++ + ++ R ++ ++KL I L EM +D + AY
Sbjct: 25 FWNDTKRAEEIT---KESKRIKDKIQ--RVESVQSKLDDIEVLKEM--MDDDDEESAYEI 77
Query: 65 SLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
++ ++ +D Y M LL G D A +T+ G G W E LL MY RW +K+
Sbjct: 78 INNIKEIEEEIDNYNMEILLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKK 137
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
Y+ V+D G+KS T++ EYA+GYL E G H L+ N + + + A
Sbjct: 138 NYKVEVIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFAS 197
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++V+P L D+ I ED+ + + G+ + A I HIPTG+ V+
Sbjct: 198 MEVLP-ELTKEQDIDIRSEDIKVDTYRASGAGGQHINKTDSAVRITHIPTGVVVQ 251
>gi|189499218|ref|YP_001958688.1| peptide chain release factor 2 [Chlorobium phaeobacteroides BS1]
gi|189494659|gb|ACE03207.1| peptide chain release factor 2 [Chlorobium phaeobacteroides BS1]
Length = 363
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 27/240 (11%)
Query: 6 NLWDDPTKSNEVLVKLADS-------LKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
N W++ ++N+++ ++ D L + DLR + E A+ + + + E ID +
Sbjct: 42 NFWENQQEANKIVKEINDHKLWTEGFLALEKQTADLREELEIAEELGEESLAEEIDSRIG 101
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+ + + + E +L G +D A +TI AG+ G + WAE L MY+RWA
Sbjct: 102 S--------IEQKIAEIEFKNMLSGKDDPGNALLTINAGAGGTEAQDWAEMLYRMYLRWA 153
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
+++G++ D G+K+AT+E + YA+GYL E G H L+ F + + H
Sbjct: 154 ERKGFKIFTDDYQEGDGAGIKTATLEIQGPYAYGYLKAENGVHRLVRVSPFDSNARRH-T 212
Query: 176 TLACVDVVPLFLETSPD--LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V P E PD ++I EDL F S G+ + + A I+HIP+GI V
Sbjct: 213 SFASVYSYP---EAPPDAEIEIRKEDLELSTFRSGGKGGQNVNKVETAVRIKHIPSGIVV 269
>gi|418644339|ref|ZP_13206485.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-55]
gi|375025884|gb|EHS19277.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-55]
Length = 330
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ TK+ +++ K +VN K L+ + ++ L + E D + + +
Sbjct: 5 NFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKEDLEQEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K+G++
Sbjct: 64 IYFKAKVDEYELQLLLDGPHDANNAILELHPGAGGAESQDWANMLFRMYQRYCEKKGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD G+KS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 233
>gi|344341314|ref|ZP_08772235.1| Peptide chain release factor 2 [Thiocapsa marina 5811]
gi|343798894|gb|EGV16847.1| Peptide chain release factor 2 [Thiocapsa marina 5811]
Length = 365
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 76 EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN 135
E ++ G D + A V I+AGS G + WAE LL MY+RW ++ G++ +++ +
Sbjct: 114 EFRRMFAGEMDAKNAYVDIQAGSGGTEAQDWAEMLLRMYLRWGERRGFKTELLEVSPGEV 173
Query: 136 GGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETSPD 192
G+KSATI+F +YAFG+L ETG H L+ F +G+ H + A V V P ++ S +
Sbjct: 174 AGIKSATIQFSGDYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFAAVFVSP-EVDDSVN 231
Query: 193 LQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
++I+ DL ++ + G+ + + A I H PTGI V+ T
Sbjct: 232 IEINPADLRIDVYRASGAGGQHVNRTESAVRITHNPTGIVVQCQT 276
>gi|224125026|ref|XP_002319484.1| predicted protein [Populus trichocarpa]
gi|222857860|gb|EEE95407.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 8/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ + + + ++ L + E + +LA E D L +A
Sbjct: 155 DLWDDPVHAGKISREHGSLMAKMKKVRTLEQELLEHIDMIKLAR-EEDDNELESEMLKAL 213
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L + + ++ E LL G D + ++AG+ G WA+ ++ MY WA + GY
Sbjct: 214 LQMRRNSNEKEQEALLSGEQDSCPCYIEVQAGAGGTESMDWAKMVMQMYKSWAQRHGYGV 273
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VVD+ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V V
Sbjct: 274 TVVDEMPGEIAGIKRATIKVDGEYAFGYAKAEAGVHRLVRISPFDSGKRRH-TSFAAVAV 332
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+P+ + + I++ DL F + G+ + + A I HIPTGI
Sbjct: 333 IPILRDGFTHVPINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGI 381
>gi|71153099|sp|Q7VNG1.2|RF2_HAEDU RecName: Full=Peptide chain release factor 2; Short=RF-2
Length = 365
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W+ P K+ + L K +L+ VVN + L E+ + + +LA +EA D A +
Sbjct: 46 IWNTPEKA-QTLGKERSTLEMVVNTINALIQGIEDVEALIELA-VEAEDEQTLYEAQIEA 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ L + E ++ GP D + ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 104 DELATKLAKLEFQRMFSGPYDATDCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A V
Sbjct: 164 ELIEVSDGDVAGLKSATIRITGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 222
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ D++I+ DL ++ + G+ + + A I H+P+GI V+
Sbjct: 223 YP-EVDDDVDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQ 273
>gi|383188744|ref|YP_005198872.1| peptide chain release factor 2 [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371587002|gb|AEX50732.1| peptide chain release factor 2 [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 365
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 19/237 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ +V + +L AE+ + +LA +EA D F A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAIVETIDELLQGAEDVTGLLELA-VEADDEDTFNETV-A 101
Query: 65 SLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LDV + L+Q E ++ G D + I+AGS G + WA LL MY+RWA+ +G+
Sbjct: 102 ELDVLTAKLEQLEFRRMFSGEYDSASCYLDIQAGSGGTEAQDWASMLLRMYLRWAEAKGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ V+++ + G+KSATI+ +YAFG+L ETG H L+ F +G H + +
Sbjct: 162 KTEVIEESDGEVAGLKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVP-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P + +E +P DL+I ++ + G+ + + A I H+PT I +
Sbjct: 221 FVYPEVDDDIEIEINPADLRID----VYRASGAGGQHVNKTESAVRITHLPTNIVTQ 273
>gi|329896805|ref|ZP_08271721.1| peptide chain release factor 2 [gamma proteobacterium IMCC3088]
gi|328921560|gb|EGG28940.1| peptide chain release factor 2 [gamma proteobacterium IMCC3088]
Length = 321
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 9/234 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+WDDP ++ + + A +V +++ L A + + L E D +
Sbjct: 1 MWDDPERAQALGKERAALEAIVVSIETLTEGANDTADLLDLVVAEN-DVDSLEDIKSEIQ 59
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +LD+ E ++ G D A + I++GS G + WAE LL MY+RW + +G++
Sbjct: 60 KLLAILDELEFRRMFSGEVDENNAYLDIQSGSGGTEAQDWAEMLLRMYLRWGEAKGFKTE 119
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ + G+KSATI+F+ +YAFG+L ETG H L+ F +G+ H + A V V
Sbjct: 120 LIECSAGEVAGIKSATIKFDGDYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVFVS 178
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
P ++ + +++I+ DL + + G+ + A + H+PTG+ V+ T
Sbjct: 179 P-EIDDNIEIEINPADLRVDTYRASGAGGQHVNKTDSAVRLTHLPTGVVVQCQT 231
>gi|322831509|ref|YP_004211536.1| Peptide chain release factor 2 [Rahnella sp. Y9602]
gi|321166710|gb|ADW72409.1| Peptide chain release factor 2 [Rahnella sp. Y9602]
Length = 365
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 19/237 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ +V + +L AE+ + +LA +EA D F A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAIVETIDELLQGAEDVTGLLELA-VEADDEDTFNETV-A 101
Query: 65 SLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LDV + L+Q E ++ G D + I+AGS G + WA LL MY+RWA+ +G+
Sbjct: 102 ELDVLTAKLEQLEFRRMFSGEYDSASCYLDIQAGSGGTEAQDWASMLLRMYLRWAEAKGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ V+++ + G+KSATI+ +YAFG+L ETG H L+ F +G H + +
Sbjct: 162 KTEVIEESDGEVAGLKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVP-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P + +E +P DL+I ++ + G+ + + A I H+PT I +
Sbjct: 221 FVYPEVDDDIEIEINPADLRID----VYRASGAGGQHVNKTESAVRITHLPTNIVTQ 273
>gi|251780395|ref|ZP_04823315.1| peptide chain release factor 2 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084710|gb|EES50600.1| peptide chain release factor 2 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 325
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 18/235 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKL--IAQLAEMEAIDYGLFKRAYRA 64
W+D ++ E+ +S ++ + ++ R ++ ++KL I L EM +D + AY
Sbjct: 6 FWNDTKRAEEIT---KESKRIKDKIQ--RVESVQSKLDDIEVLKEM--MDDDDEESAYEI 58
Query: 65 SLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
++ ++ +D Y M LL G D A +T+ G G W E LL MY RW +K+
Sbjct: 59 INNIKEIEEEIDNYNMEILLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKK 118
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
Y+ V+D G+KS T++ EYA+GYL E G H L+ N + + + A
Sbjct: 119 NYKVEVIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPFNANGKRQTSFAS 178
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++V+P L D+ I ED+ + + G+ + A I HIPTG+ V+
Sbjct: 179 MEVLP-ELTKEQDIDIRSEDIKVDTYRASGAGGQHINKTDSAVRITHIPTGVVVQ 232
>gi|227356361|ref|ZP_03840749.1| peptide chain release factor 2 [Proteus mirabilis ATCC 29906]
gi|227163471|gb|EEI48392.1| peptide chain release factor 2 [Proteus mirabilis ATCC 29906]
Length = 320
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W++P K+ + L K SL+ +V + L E+ + LA +EA D F A
Sbjct: 1 MWNEPEKA-QALGKERSSLEAIVETIDQLEQGLEDVSGLLDLA-VEADDEETFNEAVAEL 58
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K L+Q E ++ G D + ++AGS G + WA L+ MY+RWA+ G++
Sbjct: 59 EGLNKKLEQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQDWASMLMRMYLRWAESRGFKT 118
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
++++ G+KSATI+ EYA+G+L ETG H L+ F +G H + + V
Sbjct: 119 EIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSAFV 177
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ + D++I+ DL ++ + G+ + + A I H+PTG+ +
Sbjct: 178 YP-EVDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHVPTGLVTQ 228
>gi|313888002|ref|ZP_07821680.1| peptide chain release factor 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845957|gb|EFR33340.1| peptide chain release factor 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 371
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 15/234 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNA---LKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYR 63
WDD + +V+ + + ++ L DL AE+ LIA L E+E DY +
Sbjct: 47 FWDDNESAQKVIRETNSYQRKIDQYDKLIDLITDAED--LIA-LMEIEE-DYSSYSDFQE 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ K +++++ LL G D A ++I AG+ G + WA LL MY R+A+ +G+
Sbjct: 103 LVDEIEKDTAEFKLNTLLNGEYDSHDAILSIHAGAGGTEAQDWASMLLRMYTRYAENKGF 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T++ + A+GYL GE G H L+ F + H + + V
Sbjct: 163 KVETLDLLKEDEAGIKSVTLKISGDNAYGYLKGEKGVHRLVRISPFDSNKRRH-TSFSSV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
DV P ++ +++I DE+L + S G+ + A I HIPTGI V+
Sbjct: 222 DVFPE-IDDDTEVEIKDEELKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQ 274
>gi|227514375|ref|ZP_03944424.1| peptide chain release factor RF2 [Lactobacillus fermentum ATCC
14931]
gi|227087241|gb|EEI22553.1| peptide chain release factor RF2 [Lactobacillus fermentum ATCC
14931]
Length = 355
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 19/234 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 28 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 81
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 82 LDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 141
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 142 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 200
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI
Sbjct: 201 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGI 253
>gi|123967735|ref|YP_001008593.1| peptide chain release factor 2 [Prochlorococcus marinus str.
AS9601]
gi|123197845|gb|ABM69486.1| peptide chain release factor RF-2 [Prochlorococcus marinus str.
AS9601]
Length = 354
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMSLVINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E E +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIEGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
+ L I ++DL + S G+ + + A I H+P+GI+VR T
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCT 256
>gi|197285860|ref|YP_002151732.1| peptide chain release factor 2 [Proteus mirabilis HI4320]
gi|238693208|sp|B4F0M7.1|RF2_PROMH RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|194683347|emb|CAR44054.1| peptide chain release factor 2 [Proteus mirabilis HI4320]
Length = 365
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P K+ + L K SL+ +V + L E+ + LA +EA D F A
Sbjct: 45 DVWNEPEKA-QALGKERSSLEAIVETIDQLEQGLEDVSGLLDLA-VEADDEETFNEAVAE 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++K L+Q E ++ G D + ++AGS G + WA L+ MY+RWA+ G++
Sbjct: 103 LEGLNKKLEQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQDWASMLMRMYLRWAESRGFK 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++++ G+KSATI+ EYA+G+L ETG H L+ F +G H + +
Sbjct: 163 TEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSAF 221
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + D++I+ DL ++ + G+ + + A I H+PTG+ +
Sbjct: 222 VYP-EVDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHVPTGLVTQ 273
>gi|453383221|dbj|GAC82508.1| peptide chain release factor 2 [Gordonia paraffinivorans NBRC
108238]
Length = 373
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + +V +L+ + + + +LR + E+ + +LAE E + A +
Sbjct: 45 DLWNDQDHAQKVTSELSHAQSELRKVTELRQRLEDLPVHYELAEAEEGEDRAAALADADA 104
Query: 66 LDVSKLLD--QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
S D E+ +L G D A V I+AG+ G+ WA+ L+ MY+RWA+K Y
Sbjct: 105 ERASLRADIEAMEVKTMLAGEYDSREAVVNIRAGAGGVDAADWAQMLMRMYIRWAEKHDY 164
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT + Y +G LS E G H L+ F N S + + A V
Sbjct: 165 GVEVYDTSYAEEAGLKSATFAIKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAEV 223
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +E + + I + DL ++ S G+ + A + HIPTGI V
Sbjct: 224 EVLPV-VEQTDHIDIDENDLKVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 275
>gi|294507807|ref|YP_003571865.1| peptide chain release factor RF-2 [Salinibacter ruber M8]
gi|294344135|emb|CBH24913.1| peptide chain release factor RF-2 [Salinibacter ruber M8]
Length = 349
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 12/239 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP ++ E+ ++A + + A +D++ +AE+ + + L+E E D A
Sbjct: 14 DFWDDPDRAREIEKRIAREEEWIEAWEDVKEQAEDIETLQLLSEEEGEDMSDEIDAEARR 73
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
L+ + LD+ E+ LL P+D A V I G+ G + WAE LL MY+RWA+ + Y
Sbjct: 74 LE--QKLDRLELESLLDDPDDERDAIVEINPGAGGTESQDWAEMLLRMYMRWAEDQDYDV 131
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+V + + G+KSAT+ + +A+G L ETG H L+ F S H + A V V
Sbjct: 132 ELVHQQPGEEAGIKSATLNVQGRHAYGRLKSETGVHRLVRISPFDADSRRH-TSFASVFV 190
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTTLQIR 238
P ++ S + +S+ ++ F S G Q + K ++ I TG G +R
Sbjct: 191 YP-EVDDSIGVDLSEGEIELQTFRSGGKGG--QHVNKVETGVRLIWTGTLSNGEETTVR 246
>gi|425068761|ref|ZP_18471877.1| peptide chain release factor 2 [Proteus mirabilis WGLW6]
gi|425071703|ref|ZP_18474809.1| peptide chain release factor 2 [Proteus mirabilis WGLW4]
gi|404598561|gb|EKA99031.1| peptide chain release factor 2 [Proteus mirabilis WGLW4]
gi|404598661|gb|EKA99129.1| peptide chain release factor 2 [Proteus mirabilis WGLW6]
Length = 355
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P K+ + L K SL+ +V + L E+ + LA +EA D F A
Sbjct: 35 DVWNEPEKA-QALGKERSSLEAIVETIDQLEQGLEDVSGLLDLA-VEADDEETFNEAVAE 92
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++K L+Q E ++ G D + ++AGS G + WA L+ MY+RWA+ G++
Sbjct: 93 LEGLNKKLEQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQDWASMLMRMYLRWAESRGFK 152
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++++ G+KSATI+ EYA+G+L ETG H L+ F +G H + +
Sbjct: 153 TEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSAF 211
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ + D++I+ DL ++ + G+ + + A I H+PTG+ +
Sbjct: 212 VYPE-VDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHVPTGLVTQ 263
>gi|311278189|ref|YP_003940420.1| peptide chain release factor 2 [Enterobacter cloacae SCF1]
gi|308747384|gb|ADO47136.1| Peptide chain release factor 2 [Enterobacter cloacae SCF1]
Length = 365
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ +V+ L + E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAIVDTLNQMAQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LDV + L Q E ++ G D + I+AGS G + WA LL MY+RWA+ G+
Sbjct: 102 ELDVLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ V+++ + G+KSATI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEVIEESEGEVAGLKSATIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIP+G+ +
Sbjct: 221 FVYP-EVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPSGLVTQ 273
>gi|237786018|ref|YP_002906723.1| peptide chain release factor 2 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758930|gb|ACR18180.1| peptide chain release factor RF-2 [Corynebacterium kroppenstedtii
DSM 44385]
Length = 379
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 12/236 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAE--MEAIDYGLFKRAYR 63
+LWDDP + +V KL+ + + LR + ++ ++ +LA+ EA D A
Sbjct: 43 SLWDDPDHAQQVTSKLSHVQAQIKKVTTLRQRVDDMPVMYELADDATEAGDTDAADEARE 102
Query: 64 ASLDVSKLL----DQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ + L + E+ +L G D A V I++ + G+ WAE L+ MY RW +
Sbjct: 103 MADSERETLRHEIESLEVQTMLSGEYDEREAVVNIRSAAGGVDAADWAEMLMRMYTRWTE 162
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
+ G++ V D + G+KSAT +Y +G LS E G H L+ + + +
Sbjct: 163 QHGHKIDVFDISYAEEAGIKSATFIVHGDYMYGQLSVEQGTHRLVRISPFDNQGRRQTSF 222
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V+V+P+ +E + + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 223 AEVEVLPV-VEKTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 277
>gi|388257925|ref|ZP_10135103.1| peptide chain release factor 2 [Cellvibrio sp. BR]
gi|387938046|gb|EIK44599.1| peptide chain release factor 2 [Cellvibrio sp. BR]
Length = 320
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 37/245 (15%)
Query: 7 LWDDPTKSN---------EVLVKLADSLKV----VNALKDLRYKAEEAKLIAQL-AEMEA 52
+WD+P ++ E++VK D L V L D+ + ++ ++A++ AE++
Sbjct: 1 MWDNPERAQALGRERSALEMVVKTIDDLDVGVRDSRELLDMAVEEDDESMVAEVQAEVDR 60
Query: 53 IDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLN 112
+D K L + E ++ G D A + I++GS G + WAE +L
Sbjct: 61 LD---------------KQLAELEFRRMFSGETDANNAYLDIQSGSGGTEAQDWAEIVLR 105
Query: 113 MYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNG 169
MY+RW + +G++ + + G+KSATI FE EYAFG+L ETG H L+ F +G
Sbjct: 106 MYLRWGEAKGFKVTLEEVSAGDVAGIKSATIYFEGEYAFGWLRTETGVHRLVRKSPFDSG 165
Query: 170 SFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPT 226
+ H T C V ++ + ++ I+ DL + + G+ + A I HIPT
Sbjct: 166 NRRH--TSFCSVFVSPEIDDNIEIDINPADLRIDTYRASGAGGQHINKTDSAVRITHIPT 223
Query: 227 GIAVR 231
I V+
Sbjct: 224 NIVVQ 228
>gi|385834799|ref|YP_005872573.1| peptide chain release factor 2 [Lactobacillus rhamnosus ATCC 8530]
gi|355394290|gb|AER63720.1| peptide chain release factor 2 [Lactobacillus rhamnosus ATCC 8530]
Length = 332
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LDQYEM LL GP D A + I G+ G + W L+ MY RWAD+ G++
Sbjct: 65 DLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQNGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V D G+KS T+ E A+G L E GAH L+ F + H + A VDV+
Sbjct: 125 VADYQPGDEAGIKSVTLLINGENAYGLLKSEKGAHRLVRISPFDSAGRRH-TSFASVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P L+ S ++ I ED+ +F S G+ + A + H+PTGI
Sbjct: 184 PE-LDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVT 232
>gi|292487146|ref|YP_003530016.1| peptide chain release factor 1 [Erwinia amylovora CFBP1430]
gi|428784074|ref|ZP_19001567.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora ACW56400]
gi|291552563|emb|CBA19608.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora CFBP1430]
gi|312171251|emb|CBX79510.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora ATCC
BAA-2158]
gi|426277789|gb|EKV55514.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora ACW56400]
Length = 332
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K +L+ VV L + E+ + +LA +EA D F A A
Sbjct: 12 DVWNEPDRA-QALGKERSALEAVVETLDQMTQGLEDVSGLLELA-VEAEDEDTFNEAV-A 68
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + K L + E ++ G D + I+AGS G + WA LL MY+RWA+ +G+
Sbjct: 69 ELDGLDKKLGELEFRRMFSGEYDSADCYMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGF 128
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G KSATI+ +YAFG+L ETG H L+ F +G H + + V
Sbjct: 129 KTEIIEESDGEVAGTKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSV 187
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P ++ + D++I+ DL ++ + G+ + + A I H+PT I V+
Sbjct: 188 FIYPE-VDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQ 240
>gi|78778568|ref|YP_396680.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9312]
gi|78712067|gb|ABB49244.1| bacterial peptide chain release factor 2 (bRF-2) [Prochlorococcus
marinus str. MIT 9312]
Length = 354
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+IKAG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSIKAGAGGTDAQDWVEILLRMYSRWADNNQMSLIINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQYEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
+ L I ++DL + S G+ + + A I H+P+GI+VR T
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCT 256
>gi|410634722|ref|ZP_11345355.1| peptide chain release factor 2 [Glaciecola arctica BSs20135]
gi|410145765|dbj|GAC22222.1| peptide chain release factor 2 [Glaciecola arctica BSs20135]
Length = 349
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W+ P ++ + L K +L+ VV ++ L ++ + + +LA +EA D F A
Sbjct: 29 DVWNLPERA-QALGKEKVALELVVQTIEILAQGTDDVEGLVELA-VEAEDQDTFDEAESE 86
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++ K L+ E ++ GPND + I++GS G + WA LL MY+RW + G++
Sbjct: 87 LAELMKKLEILEFRRMFSGPNDANHGYIDIQSGSGGTEAQDWANMLLRMYLRWGEAHGFK 146
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ G+KSATI+F +YAFG++ ETG H L+ F +GS H + A V
Sbjct: 147 TELIEVSDGDVAGIKSATIKFSGDYAFGWIRTETGVHRLVRKSPFDSGSRRH-TSFASVF 205
Query: 182 VVP-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + +E P DL+I + + G+ + A I H PT I V+
Sbjct: 206 AYPEVDDDIEIEIDPSDLRID----TYRASGAGGQHVNRTDSAVRITHEPTNIVVQ 257
>gi|254479978|ref|ZP_05093226.1| peptide chain release factor 2 [marine gamma proteobacterium
HTCC2148]
gi|214039540|gb|EEB80199.1| peptide chain release factor 2 [marine gamma proteobacterium
HTCC2148]
Length = 310
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
L++ E ++ G D A + I++GS G + WAE +L MY+RW + +G++ ++++
Sbjct: 55 LERLEFRRMFDGEMDANNAFLDIQSGSGGTEAQDWAEMMLRMYLRWGEAKGFKTQLMEAS 114
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLE 188
G+KSATI+FE EYAFG+L ETG H L+ F +G+ H + + V V P ++
Sbjct: 115 AGDVAGIKSATIKFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFSSVFVSPE-ID 172
Query: 189 TSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ +++I+ DL + + G+ + A + H PTGIAV+
Sbjct: 173 DNIEIEINPADLRVDTYRASGAGGQHVNKTDSAVRLTHNPTGIAVQ 218
>gi|184154810|ref|YP_001843150.1| peptide chain release factor 2 [Lactobacillus fermentum IFO 3956]
gi|183226154|dbj|BAG26670.1| peptide chain release factor 2 [Lactobacillus fermentum IFO 3956]
Length = 355
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 19/234 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ E + L + K + L+ + EE L A++ + E +A
Sbjct: 28 DFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEP------DPELKAE 81
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
LD V + L Y + +LL GP D A + I G+ G + W E LL MY+RWA++
Sbjct: 82 LDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 141
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G+ + + G+KS T+ + A+GYL E G H L+ F + + H +
Sbjct: 142 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRH-TSF 200
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
A VDV+P+ L+ S +++I DL F + G+ + + A I H+PTGI
Sbjct: 201 ASVDVMPI-LDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGI 253
>gi|445060263|ref|YP_007385667.1| peptide chain release factor 2 [Staphylococcus warneri SG1]
gi|443426320|gb|AGC91223.1| peptide chain release factor 2 [Staphylococcus warneri SG1]
Length = 329
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD ++ +++ K +VN +L E+ +L + E D + +
Sbjct: 5 NFWDDQNRAQDIIDKNNALKSMVNGYYELEETVEDMSATVELLQ-EEFDEDMKQELENNV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +D +E+ LL GP D A + + G+ G + W LL MY R+ ++ G++
Sbjct: 64 IEFKSEIDHFELQLLLDGPYDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQSGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PDFDNDEIEIEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|420219569|ref|ZP_14724584.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04008]
gi|394288827|gb|EJE32727.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04008]
Length = 333
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLLGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|116620705|ref|YP_822861.1| peptide chain release factor 2 [Candidatus Solibacter usitatus
Ellin6076]
gi|116223867|gb|ABJ82576.1| bacterial peptide chain release factor 2 (bRF-2) [Candidatus
Solibacter usitatus Ellin6076]
Length = 322
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 69 SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVV 128
S+LL++ E + LL G ND A VTI G+ G + WAE LL MY+RWA++E + +
Sbjct: 49 SELLERLETAMLLSGENDARSAIVTIHPGAGGTESQDWAEMLLRMYLRWAEREKFATVIT 108
Query: 129 DKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLF 186
D+ + G+KS T E E A+G L E G H L+ + + + A V V P
Sbjct: 109 DRLEGEGAGIKSVTFEVNGENAYGLLQSEIGVHRLVRISPFDANARRHTSFASVFVFPQ- 167
Query: 187 LETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ + I D+DL F + G+ ++ A I H PTGI V+
Sbjct: 168 VDDEIKIDIQDKDLRIDTFRASGAGGQHVNMTDSAVRITHFPTGIVVQ 215
>gi|261491637|ref|ZP_05988220.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261494996|ref|ZP_05991465.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309405|gb|EEY10639.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312763|gb|EEY13883.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 304
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 111/212 (52%), Gaps = 9/212 (4%)
Query: 26 KVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPN 85
++VN +K L E+ + + +LA +EA D F A + ++ K L E ++ GP+
Sbjct: 4 QIVNTIKALEQGIEDVEGLIELA-VEAEDQDTFNEAQVEADELEKKLADLEFKRMFSGPH 62
Query: 86 DVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEF 145
D + ++AGS G + W E LL MY+RWA+ +G++ +++ G+KSAT++
Sbjct: 63 DSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKAELMEASDGDVAGIKSATVKI 122
Query: 146 EFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL-- 200
+YA+G+ ETG H L+ F + H + + V P ++ D++I+ DL
Sbjct: 123 SGDYAYGWFRTETGIHRLVRKSPFDANNGRH-TSFSAAFVYPE-VDDDIDIEINPADLRI 180
Query: 201 -LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ + G+ + + A I HIP+GI V+
Sbjct: 181 DVYRASGAGGQHVNKTESAVRITHIPSGIVVQ 212
>gi|333991485|ref|YP_004524099.1| peptide chain release factor 2 [Mycobacterium sp. JDM601]
gi|333487453|gb|AEF36845.1| peptide chain release factor 2 PrfB [Mycobacterium sp. JDM601]
Length = 371
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ V +L+ + + ++ LR + ++ ++ +LA E +A +
Sbjct: 43 NLWDDQTRAQRVTSELSHAQGELRRVEGLRSRLDDLPVLYELAAEEEGQAAADAQAEADA 102
Query: 66 LDVSKLLD--QYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
VS D E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELVSLRADIEAMEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHNY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT +A+G LS E G H L+ F N S + + A V
Sbjct: 163 GVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 273
>gi|406884797|gb|EKD32138.1| hypothetical protein ACD_77C00170G0004 [uncultured bacterium]
Length = 311
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K LD E+ +L D GA + I +G+ G W+ L+ MYVRW ++ GY+
Sbjct: 49 ELVKKLDNLELRSMLGSEGDNLGAILKINSGAGGTESNDWSSMLMRMYVRWGERNGYKVH 108
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D G+KS T+EFE +YA+GYL E G H L+ N + T + V V P
Sbjct: 109 IYDLLEGDEAGIKSVTVEFEGDYAYGYLKAENGVHRLVRISPFNSQGKRQTTFSSVYVYP 168
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
++ + ++I+ DL F S G+ + + ++H+PTGI V T
Sbjct: 169 A-VDDTITIEINPGDLEWDTFRSGGAGGQNVNKVETGVRVRHLPTGITVENT 219
>gi|239636633|ref|ZP_04677635.1| peptide chain release factor 2 [Staphylococcus warneri L37603]
gi|239597988|gb|EEQ80483.1| peptide chain release factor 2 [Staphylococcus warneri L37603]
Length = 330
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WDD ++ +++ K +VN +L E+ +L + E D + +
Sbjct: 1 MMTEPNFWDDQNRAQDIIDKNNALKSMVNGYYELEESVEDMSATVELLQ-EEFDEDMKQE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ +D +E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LENNVVEFKAEIDHFELQLLLDGPYDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 SGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFDNDEIEIEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|85712973|ref|ZP_01044012.1| Protein chain release factor B [Idiomarina baltica OS145]
gi|85693211|gb|EAQ31170.1| Protein chain release factor B [Idiomarina baltica OS145]
Length = 348
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 15/234 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+WDDP K+ + + A +V+ L +L E+ + + LA +EA D F A +
Sbjct: 29 VWDDPPKAQSLGKERAALEQVIETLDNLEQGLEDIEGLVDLA-VEAEDETTFDEAEQELK 87
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ L+ E ++ ND V I++GS G + WA LL MY+RWA+ ++
Sbjct: 88 ELLTQLEALEFRRMFSRDNDSSDCYVDIQSGSGGTEAQDWANMLLRMYLRWAEAHEFKTE 147
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+ + + G+KSAT+ EYA+G+L ETG H L+ F +G+ H + A V +
Sbjct: 148 ITELSEGEVAGIKSATVRIAGEYAYGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVFIY 206
Query: 184 P-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + +E +P DL+I + + G+ + A I H PTGI V+
Sbjct: 207 PEVDDDIEIEINPSDLRID----TYRASGAGGQHVNRTDSAVRITHEPTGIVVQ 256
>gi|340793648|ref|YP_004759111.1| peptide chain release factor RF-2 [Corynebacterium variabile DSM
44702]
gi|340533558|gb|AEK36038.1| peptide chain release factor RF-2 [Corynebacterium variabile DSM
44702]
Length = 377
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 11/235 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + ++ LR + ++ ++ ++A+ A++ +
Sbjct: 43 SLWDDPDHAQQVTSQLSHVQSRLKKVRGLRSRLDDLPVMYEMADEAAVEDAAEGAEAKEL 102
Query: 66 LD-----VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E++ +L G D A V I++ + G+ WAE L+ MY RWA+K
Sbjct: 103 ADAELADLRADIESLEVTTMLSGEYDDREAVVNIRSAAGGVDAADWAEMLMRMYTRWAEK 162
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ V D + G+KSAT +Y +G LS E G H L+ + + + A
Sbjct: 163 NGHKVEVYDISYAEEAGIKSATFVVHGDYMYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 222
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ETS + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 223 EVEVLPV-VETSDHVDIDENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 276
>gi|337744478|ref|YP_004638640.1| protein PrfB [Paenibacillus mucilaginosus KNP414]
gi|379718117|ref|YP_005310248.1| protein PrfB [Paenibacillus mucilaginosus 3016]
gi|386720677|ref|YP_006187002.1| protein PrfB [Paenibacillus mucilaginosus K02]
gi|336295667|gb|AEI38770.1| PrfB [Paenibacillus mucilaginosus KNP414]
gi|378566789|gb|AFC27099.1| PrfB [Paenibacillus mucilaginosus 3016]
gi|384087801|gb|AFH59237.1| protein PrfB [Paenibacillus mucilaginosus K02]
Length = 333
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD K+ +++ ++ ++ L+ L + E+ +L+ +L + E D L
Sbjct: 5 DFWDDNEKAQKLIAEMNAIKGSIDQLQALTAEYEDLELMMELVQEEN-DESLASELTSGI 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ +E+ LL P D A + + G+ G + WAE LL MY RWA+K G++
Sbjct: 64 TALVKKLEGFELQLLLSQPYDKLNAILELHPGAGGTESQDWAEMLLRMYRRWAEKRGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V+D GVKS T+ + A+GYL E G H L+ F + H + ++C D+
Sbjct: 124 EVLDYLPGDEAGVKSVTLLIQGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-DI 182
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P ++ +++I EDL + + G+ + A I H+PTG+ V
Sbjct: 183 MP-EIDDDVEIEIRTEDLKVDTYRASGAGGQHINTTDSAVRITHMPTGVVV 232
>gi|410612434|ref|ZP_11323512.1| peptide chain release factor 2 [Glaciecola psychrophila 170]
gi|410167976|dbj|GAC37401.1| peptide chain release factor 2 [Glaciecola psychrophila 170]
Length = 349
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+ P ++ + + A VV+ + L E+ + + LA +EA D F A
Sbjct: 29 DVWNQPERAQALGKEKAALELVVDTIVLLEQGTEDVEGLVDLA-VEAEDQYTFDEAESEL 87
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K L+ E ++ GPND + I++GS G + WA LL MY+RW + G++
Sbjct: 88 AELIKKLELLEFRRMFSGPNDANHGYIDIQSGSGGTEAQDWANMLLRMYLRWGEAHGFKT 147
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI+F +YAFG++ ETG H L+ F +GS H + A
Sbjct: 148 ELIEVSDGDVAGIKSATIKFSGDYAFGWIRTETGVHRLVRKSPFDSGSRRH-TSFASAFA 206
Query: 183 VP-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + +E P DL+I + + G+ + A I H PT I V+
Sbjct: 207 YPEVDDDIEIEIDPSDLRID----TYRASGAGGQHVNRTDSAVRITHEPTNIVVQ 257
>gi|374997883|ref|YP_004973382.1| peptide chain release factor 2 [Desulfosporosinus orientis DSM 765]
gi|357216249|gb|AET70867.1| peptide chain release factor 2 [Desulfosporosinus orientis DSM 765]
Length = 367
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +++ +LA V ++L + EE + QLA ME D L +
Sbjct: 43 DLWDDPENAQKIMQELALHQNKVKLFQELEEELEETATLWQLA-MEEDDVSLEGDVAQGV 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A +T+ AG+ G + W + L +YVRW ++ GY+
Sbjct: 102 KALYQRFEALELELLLSGQYDRNNAILTLHAGAGGTEAQDWVQMLYRLYVRWGERHGYKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D + G+KSAT+ F E A+GY E G H L+ + S + A VDV+
Sbjct: 162 ETLDFLPGEEAGIKSATLSFSGENAYGYAKSEKGVHRLVRISPFDASGRRHTSFASVDVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P E + ++ I EDL + S G+ + A I H+PTGI V+
Sbjct: 222 PEVTEDN-EITIDTEDLRIDTYRSGGAGGQHVNKTDSAIRITHLPTGIVVQ 271
>gi|292900474|ref|YP_003539843.1| peptide chain release factor 2 [Erwinia amylovora ATCC 49946]
gi|291200322|emb|CBJ47450.1| peptide chain release factor 2 [Erwinia amylovora ATCC 49946]
Length = 365
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K +L+ VV L + E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPDRA-QALGKERSALEAVVETLDQMTQGLEDVSGLLELA-VEAEDEDTFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + K L + E ++ G D + I+AGS G + WA LL MY+RWA+ +G+
Sbjct: 102 ELDGLDKKLGELEFRRMFSGEYDSADCYMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G KSATI+ +YAFG+L ETG H L+ F +G H + + V
Sbjct: 162 KTEIIEESDGEVAGTKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSV 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P ++ + D++I+ DL ++ + G+ + + A I H+PT I V+
Sbjct: 221 FIYPE-VDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQ 273
>gi|333928926|ref|YP_004502505.1| peptide chain release factor 2 [Serratia sp. AS12]
gi|333933879|ref|YP_004507457.1| peptide chain release factor 2 [Serratia plymuthica AS9]
gi|386330749|ref|YP_006026919.1| Peptide chain release factor 2 [Serratia sp. AS13]
gi|333475486|gb|AEF47196.1| Peptide chain release factor 2 [Serratia plymuthica AS9]
gi|333492986|gb|AEF52148.1| Peptide chain release factor 2 [Serratia sp. AS12]
gi|333963082|gb|AEG29855.1| Peptide chain release factor 2 [Serratia sp. AS13]
Length = 365
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP ++ + + A +V + L E+ + +LA +EA D F A A
Sbjct: 45 DVWNDPERAQALGKERAALEAIVETIDQLEQGGEDVTGLLELA-VEADDEETFNEAV-AE 102
Query: 66 LD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD +S L+Q E ++ G D + I+AGS G + WA LL MY+RWA+ +G++
Sbjct: 103 LDQLSAKLEQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAESKGFK 162
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
V+++ G+KSATI+ +YAFG+L ETG H L+ F +G H + + V
Sbjct: 163 TEVIEESDGDVAGLKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSVF 221
Query: 182 VVP------LFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P DL+I ++ + G+ + + A I H+PT I V+
Sbjct: 222 IYPEVDDDIDIDINPADLRID----VYRASGAGGQHVNKTESAVRITHLPTNIVVQ 273
>gi|212640382|ref|YP_002316902.1| protein chain release factor B [Anoxybacillus flavithermus WK1]
gi|212561862|gb|ACJ34917.1| Protein chain release factor B [Anoxybacillus flavithermus WK1]
Length = 329
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A++LK +V + L + E ++ +L + E D L K
Sbjct: 5 DFWDD-QKAAQSVISEANALKDLVGEFRSLEERFENLEVTYELVKEEP-DEELQKELVAE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ +SK ++E+ LL P D A + + G+ G + WA LL MY RWA+K+GY+
Sbjct: 63 AKKLSKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGYK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + GVKS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLF-----LETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VVP F ++ PD D + S G+ + A I HIPTGI V
Sbjct: 182 VVPEFDDNIEIDVRPDEIKVD---TYRSSGAGGQHVNTTDSAVRITHIPTGIVV 232
>gi|255654235|ref|ZP_05399644.1| peptide chain release factor 2 [Clostridium difficile QCD-23m63]
Length = 339
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D + VL + L ++L+ +LK L E+ +++ ++ +E D + +
Sbjct: 16 DFWNDNEVAQRVLQENKSLKETLEEYESLKSL---LEDIEVLIEIG-LEEEDDSVERDIE 71
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ + + L + ++ LL G D A ++I AG+ G+ + WA+ LL MY+RW++ +G
Sbjct: 72 KSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRWSESKG 131
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLA 178
Y+ +++D G+K+ATI E A+GYL E G H L+ P+G + A
Sbjct: 132 YKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSG--KRHTSFA 189
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+DV P L+ + +++I+ DL + + G+ + A I HIPTG+ V+
Sbjct: 190 SIDVTP-ELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQ 244
>gi|192291110|ref|YP_001991715.1| hypothetical protein Rpal_2731 [Rhodopseudomonas palustris TIE-1]
gi|192284859|gb|ACF01240.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
Length = 376
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+LW+DP K+ +++ L DSL + ++ R + ++I +L E E D G+ K A
Sbjct: 43 DLWNDPQKAQKLMQERTSLEDSLTGIGKVE--RELTDNIEMI-ELGEAEG-DEGIVKEAE 98
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A + K + + E+ LL G D + + AG+ G + WA LL MYVRWA+K G
Sbjct: 99 DALKALKKEVARRELEALLSGEADRFDTYLEVHAGAGGTESQDWASMLLRMYVRWAEKHG 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ +++ + G+KSATI+ A+G+L E G H L+ F + + H + +
Sbjct: 159 FKIEYLEESEGEEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRH-TSFSS 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V + P+ ++ S + I++ D+ S G+ + + A + HIPTG+AV
Sbjct: 218 VQIFPV-IDNSIKIDIAESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAV 270
>gi|433447236|ref|ZP_20410869.1| peptide chain release factor B [Anoxybacillus flavithermus
TNO-09.006]
gi|432000070|gb|ELK20976.1| peptide chain release factor B [Anoxybacillus flavithermus
TNO-09.006]
Length = 329
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ WDD K+ + ++ A++LK +V + L + E ++ +L + E D L K
Sbjct: 5 DFWDD-QKAAQAVISEANALKDLVGEFRSLEERFENLEVTYELVKEEP-DEELQKELVAE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ +SK ++E+ LL P D A + + G+ G + WA LL MY RWA+K+GY+
Sbjct: 63 AKKLSKDFSEFELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAEKKGYK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D + G+KS T+ + A+GYL E G H L+ F H + ++C +
Sbjct: 123 VETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFVSC-E 181
Query: 182 VVPLF-----LETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
VVP F ++ PD D + S G+ + A I HIPTGI V
Sbjct: 182 VVPEFDDNIEIDVRPDEIKVD---TYRSSGAGGQHVNTTDSAVRITHIPTGIVV 232
>gi|307546434|ref|YP_003898913.1| peptide chain release factor 2 [Halomonas elongata DSM 2581]
gi|307218458|emb|CBV43728.1| peptide chain release factor 2 [Halomonas elongata DSM 2581]
Length = 301
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 9/210 (4%)
Query: 27 VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPND 86
VV+ + L + + + +LAEME D R + L++ E ++ G D
Sbjct: 2 VVDTIDTLERGLNDNRDLLELAEMEE-DADTVDEVSRELESLRADLEKLEFRRMFAGEMD 60
Query: 87 VEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFE 146
A + I+AGS G + WA LL MY+RWA+ G++ +++ + G+KSAT+ +
Sbjct: 61 PNNAYLDIQAGSGGTEAQDWANMLLRMYLRWAEHHGFKADLIELSAGEVAGIKSATVHIQ 120
Query: 147 FEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL--- 200
EYAFG+L ETG H L+ F +G H + A V + P ++ S +++I+ DL
Sbjct: 121 GEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFASVFLSPE-VDDSFEVEINPSDLRVD 178
Query: 201 LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ S G+ + A I H PTGI V
Sbjct: 179 TYRSSGAGGQHVNTTDSAVRITHEPTGIVV 208
>gi|117617639|ref|YP_857857.1| peptide chain release factor 2 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166223621|sp|A0KNK6.1|RF2_AERHH RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|117559046|gb|ABK35994.1| peptide chain release factor 2 (programmed frameshift) [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 365
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ + + VV + L A++ ++ +LA +E D F A A
Sbjct: 45 DVWNEPERAQALGKERVALENVVGTIDTLTQGADDVAMLVELA-VEGEDEDTFNEAV-AE 102
Query: 66 LDV--SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
DV +KL+D E ++ G +D + I++GS G + WA +L MY+RW D GY
Sbjct: 103 ADVLETKLVD-LEFRRMFSGQHDPSDCYIDIQSGSGGTEAQDWANMVLRMYLRWGDAHGY 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +++ G+KSATI+F EYAFG+L ETG H L+ F +G H + V
Sbjct: 162 KPELIECSEGDVAGIKSATIKFTGEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFCSV 220
Query: 181 DVVPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P + DL+I ++ + G+ + + A I HIPTG+ V+
Sbjct: 221 FVYPEIDDDIDIEINPADLRID----VYRASGAGGQHVNRTESAVRITHIPTGVVVQ 273
>gi|238923127|ref|YP_002936640.1| peptide chain release factor 2 in translation [Eubacterium rectale
ATCC 33656]
gi|238874799|gb|ACR74506.1| peptide chain release factor 2 in translation [Eubacterium rectale
ATCC 33656]
Length = 330
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP KS + +L V L+ + E+ + + ++ E D L +
Sbjct: 5 DFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEMG-YEENDESLIPEIQQML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D D M LL G D A + + AG+ G WA L MY +WADK+G+
Sbjct: 64 DDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWASMLFRMYSKWADKKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D+++ DED+ + S G+ + A I H P+GI V+
Sbjct: 184 P-DIEEDLDIEVKDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQ 233
>gi|255091190|ref|ZP_05320668.1| peptide chain release factor 2 [Clostridium difficile CIP 107932]
gi|255099304|ref|ZP_05328281.1| peptide chain release factor 2 [Clostridium difficile QCD-63q42]
gi|255305089|ref|ZP_05349261.1| peptide chain release factor 2 [Clostridium difficile ATCC 43255]
gi|255312847|ref|ZP_05354430.1| peptide chain release factor 2 [Clostridium difficile QCD-76w55]
gi|255515606|ref|ZP_05383282.1| peptide chain release factor 2 [Clostridium difficile QCD-97b34]
gi|255648700|ref|ZP_05395602.1| peptide chain release factor 2 [Clostridium difficile QCD-37x79]
gi|306518820|ref|ZP_07405167.1| peptide chain release factor 2 [Clostridium difficile QCD-32g58]
Length = 339
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D + VL + L ++L+ +LK L E+ +++ ++ +E D + +
Sbjct: 16 DFWNDNEVAQRVLQENKSLKETLEEYESLKSL---LEDIEVLIEIG-LEEDDDSVERDIE 71
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ + + L + ++ LL G D A ++I AG+ G+ + WA+ LL MY+RW++ +G
Sbjct: 72 KSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRWSESKG 131
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLA 178
Y+ +++D G+K+ATI E A+GYL E G H L+ P+G + A
Sbjct: 132 YKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSG--KRHTSFA 189
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+DV P L+ + +++I+ DL + + G+ + A I HIPTG+ V+
Sbjct: 190 SIDVTP-ELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQ 244
>gi|116748170|ref|YP_844857.1| peptide chain release factor 2 [Syntrophobacter fumaroxidans MPOB]
gi|116697234|gb|ABK16422.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophobacter
fumaroxidans MPOB]
Length = 312
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 108/210 (51%), Gaps = 7/210 (3%)
Query: 27 VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPND 86
+V + L + + +L+ ++A +E D + K +R +L + K L E+ +LL ND
Sbjct: 2 IVENWQRLSEELRDNELMLEMA-LEEEDREVLKDVHRKALSLQKELRTVELQQLLGEEND 60
Query: 87 VEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFE 146
+ A V+I AG+ G + WAE LL MY+RW +K+ + ++VD + G+KS T
Sbjct: 61 DKNAIVSINAGAGGTEAQDWAEMLLRMYLRWCEKKSFTVQMVDMLEGEEAGIKSGTFTVS 120
Query: 147 FEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---L 201
+A+G L GE+G H L+ + S + A V V+P ++ +++I DL
Sbjct: 121 GSHAYGLLKGESGIHRLVRISPFDASGRRHTSFAAVLVIP-EVDEKIEVEIKQADLRIDT 179
Query: 202 FSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ + G+ + A I H+PTGI V+
Sbjct: 180 YRASGAGGQHVNKTSSAVRITHLPTGIVVQ 209
>gi|152985089|ref|YP_001346821.1| peptide chain release factor 2 [Pseudomonas aeruginosa PA7]
gi|150960247|gb|ABR82272.1| peptide chain release factor 2 [Pseudomonas aeruginosa PA7]
Length = 382
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N+W++P + + + A +VV L DL +++ + +A +E D G
Sbjct: 62 NVWNNPEYAQNLGRERAQLAQVVETLDDLTSGLADSRDLLDMA-VEEGDEGAVGDVAGEV 120
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ ++L++ E ++ G D A + I+AGS G + WA LL MY+RWADK G+
Sbjct: 121 ERLREILEKLEFRRMFSGEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWADKHGFDA 180
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ + G+K AT+ + EYAFG+L E G H L+ F +G+ H + V V
Sbjct: 181 TIIELSEGEVAGIKGATVHVKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRH-TSFTAVFV 239
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + +++I+ DL + S G+ + A I H+PT V
Sbjct: 240 SPE-IDDNIEIEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVV 289
>gi|300174043|ref|YP_003773209.1| peptide chain release factor 2 [Leuconostoc gasicomitatum LMG
18811]
gi|299888422|emb|CBL92390.1| Peptide chain release factor 2 [Leuconostoc gasicomitatum LMG
18811]
Length = 372
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 8/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +++ + ++ +L +AEE L+ ++ + D + + +
Sbjct: 45 FWDDNVKAQKIIEENNVLKNRRDSFLNLTSQAEEIDLLIEMLSEDVTDSEMMSELEESIV 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K ++ Y + +LL P D A + + GS G W L MY RWA + G++
Sbjct: 105 KAQKDIETYNLEQLLTEPYDANNAILEVHPGSGGTESTDWGANLYRMYTRWAQQHGFQVD 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D G+ SATI+ AFG+L E G H + F + H + VDV+
Sbjct: 165 VLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVRISPFDSAGRRH-TSFVSVDVM 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P L+ + D++I D+D+ +F S G+ + + H PTGI V T
Sbjct: 224 PE-LDDTIDIEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSST 275
>gi|119947032|ref|YP_944712.1| peptide chain release factor 2 [Psychromonas ingrahamii 37]
gi|119865636|gb|ABM05113.1| bacterial peptide chain release factor 2 (bRF-2) [Psychromonas
ingrahamii 37]
Length = 329
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W +P ++ + L K +L+ VV+ + L E+ ++ ++A E D F A +
Sbjct: 10 VWSEPERA-QALGKERSALELVVDTIDALSAGTEDILMLVEMA-TEENDQDSFDEAQKEV 67
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K L+ E ++ G +D + I++GS G + WA LL MY+RW + GY+
Sbjct: 68 NELEKKLEVLEFRRMFSGNHDACSCYLDIQSGSGGTEAQDWANILLRMYLRWGEAHGYKT 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+K ATI F EYAFG+L ETG H L+ F + H + A +
Sbjct: 128 ELMEVSAGDVAGIKGATIRFTGEYAFGWLRTETGVHRLVRKSPFDSSGRRH-TSFASAFI 186
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D+QI+ DL ++ + G+ + + A I H+PT I V+
Sbjct: 187 YPE-IEDDIDIQINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNIVVQ 237
>gi|94495879|ref|ZP_01302458.1| protein chain release factor B [Sphingomonas sp. SKA58]
gi|94424571|gb|EAT09593.1| protein chain release factor B [Sphingomonas sp. SKA58]
Length = 377
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 13/237 (5%)
Query: 2 VRNYNLWDDPTKSNEVL---VKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLF 58
V + LWD+ ++ EV+ +L ++ A++ K++ A+LI ++AE E D G+
Sbjct: 41 VEDPTLWDNAKQAQEVMRERTRLDSAIGATRAIE--AEKSDTAELI-EMAEAEG-DEGMV 96
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
A A ++ D+ ++ LL G D + I AG+ G + WAE L MY RWA
Sbjct: 97 DEAVAALKALADRADEDKIKALLAGEADSYDTYLEIHAGAGGTESQDWAEMLSRMYRRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEAT 176
++ GY+ +VD G+KSAT + E A+GY E+G H L+ + S +
Sbjct: 157 ERRGYKVELVDYQAGDQAGIKSATFLMKGENAYGYAKTESGVHRLVRISPYDSSARRHTS 216
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ V V P+ ++ D+++ + DL + + G+ + A I H+P+GI V
Sbjct: 217 FSSVWVYPV-IDDDIDIEVKESDLKIDTYRASGAGGQHVNTTDSAVRITHVPSGIIV 272
>gi|254973803|ref|ZP_05270275.1| peptide chain release factor 2 [Clostridium difficile QCD-66c26]
gi|260681922|ref|YP_003213207.1| peptide chain release factor 2 [Clostridium difficile CD196]
gi|260685520|ref|YP_003216653.1| peptide chain release factor 2 [Clostridium difficile R20291]
gi|260208085|emb|CBA60326.1| peptide chain release factor 2 [Clostridium difficile CD196]
gi|260211536|emb|CBE01711.1| peptide chain release factor 2 [Clostridium difficile R20291]
Length = 338
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D + VL + L ++L+ +LK L E+ +++ ++ +E D + +
Sbjct: 15 DFWNDNEVAQRVLQENKSLKETLEEYESLKSL---LEDIEVLIEIG-LEEDDDSVERDIE 70
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ + + L + ++ LL G D A ++I AG+ G+ + WA+ LL MY+RW++ +G
Sbjct: 71 KSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRWSESKG 130
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLA 178
Y+ +++D G+K+ATI E A+GYL E G H L+ P+G + A
Sbjct: 131 YKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSG--KRHTSFA 188
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+DV P L+ + +++I+ DL + + G+ + A I HIPTG+ V+
Sbjct: 189 SIDVTP-ELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQ 243
>gi|407002947|gb|EKE19587.1| hypothetical protein ACD_8C00135G0001 [uncultured bacterium]
Length = 306
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 10/209 (4%)
Query: 28 VNALKDLRYK-AEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPND 86
+ +L+ L K AE ++I+ E E + ++ + ++ K D E LL G D
Sbjct: 5 IASLESLEKKVAELIEIISLFGETENEQHAEIEKQF---AEIQKEFDALEFKSLLGGEYD 61
Query: 87 VEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFE 146
+ I++G+ G+ + WA+ L MY++W++K G++ +V++ G+KSATIE
Sbjct: 62 KSDVILAIRSGAGGVDAQDWAQMLERMYLKWSEKNGFKAVMVEETRGAEAGIKSATIEIS 121
Query: 147 FEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDLL--- 201
YA+GYL E G H L+ N + + A V+V+P+ E S ++ IS DL+
Sbjct: 122 GAYAYGYLQSEAGVHRLVRLSPFNSDNLRQTSFAIVEVLPVIEEIS-EVVISPTDLVIDT 180
Query: 202 FSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + G+ + A I H PTG+ V
Sbjct: 181 YRASGAGGQHVNTTDSAVRITHTPTGVVV 209
>gi|242242124|ref|ZP_04796569.1| peptide chain release factor 2 [Staphylococcus epidermidis W23144]
gi|242234437|gb|EES36749.1| peptide chain release factor 2 [Staphylococcus epidermidis W23144]
Length = 332
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +V+ L ++ +L + E D + K
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQ-EEYDEDMKKELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWAGMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|406920952|gb|EKD58931.1| hypothetical protein ACD_56C00025G0004 [uncultured bacterium]
Length = 302
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
+ K + E LL G D + +++G+ G+ + W E LL MY+RW++K G+ +
Sbjct: 39 IQKEFESLEFKSLLGGQYDKNDVILVLRSGAGGVDAQDWTEMLLRMYLRWSEKNGFSAHL 98
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
V++ G+KSATIE YAFGYL E G H L+ N + + A +V+P+
Sbjct: 99 VEETRGGEAGIKSATIEISGPYAFGYLQSEAGVHRLVRLSPFNADSLRQTSFAIAEVLPI 158
Query: 186 FLETSPDLQISDEDLL---FSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+E ++ I +DL+ + + G+ + A I H+PTG+ V
Sbjct: 159 -IEEIAEVNIQPQDLVIDTYRASGAGGQHVNTTDSAVRITHLPTGVVV 205
>gi|395773704|ref|ZP_10454219.1| peptide chain release factor 2 [Streptomyces acidiscabies 84-104]
Length = 368
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ ++ KL+ V LR + ++ ++ ++A+ E D A
Sbjct: 44 SLWDNPDEAQKITSKLSHLQAEVRKADTLRGRIDDLSVLFEMAD-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K L + E+ LL G D A V I+A + G+ +AE+L MY+RWA+++GY+
Sbjct: 103 TAVRKALAEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+++ + G+KS T YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELIETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>gi|423080609|ref|ZP_17069229.1| peptide chain release factor 2 [Clostridium difficile 002-P50-2011]
gi|423085978|ref|ZP_17074411.1| peptide chain release factor 2 [Clostridium difficile 050-P50-2011]
gi|357548002|gb|EHJ29875.1| peptide chain release factor 2 [Clostridium difficile 050-P50-2011]
gi|357552982|gb|EHJ34745.1| peptide chain release factor 2 [Clostridium difficile 002-P50-2011]
Length = 338
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D + VL + L ++L+ +LK L E+ +++ ++ +E D + +
Sbjct: 15 DFWNDNEVAQRVLQENKSLKETLEEYESLKSL---LEDIEVLIEIG-LEEDDDSVERDIE 70
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ + + L + ++ LL G D A ++I AG+ G+ + WA+ LL MY+RW++ +G
Sbjct: 71 KSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRWSESKG 130
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLA 178
Y+ +++D G+K+ATI E A+GYL E G H L+ P+G + A
Sbjct: 131 YKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSG--KRHTSFA 188
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+DV P L+ + +++I+ DL + + G+ + A I HIPTG+ V+
Sbjct: 189 SIDVTP-ELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQ 243
>gi|126697716|ref|YP_001086613.1| peptide chain release factor 2 (RF-2) [Clostridium difficile 630]
gi|384359474|ref|YP_006197326.1| peptide chain release factor 2 [Clostridium difficile BI1]
gi|115249153|emb|CAJ66964.1| Peptide chain release factor 2 (RF-2) [Clostridium difficile 630]
Length = 328
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D + VL + L ++L+ +LK L E+ +++ ++ +E D + +
Sbjct: 5 DFWNDNEVAQRVLQENKSLKETLEEYESLKSL---LEDIEVLIEIG-LEEDDDSVERDIE 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ + + L + ++ LL G D A ++I AG+ G+ + WA+ LL MY+RW++ +G
Sbjct: 61 KSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRWSESKG 120
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLA 178
Y+ +++D G+K+ATI E A+GYL E G H L+ P+G + A
Sbjct: 121 YKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSG--KRHTSFA 178
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+DV P L+ + +++I+ DL + + G+ + A I HIPTG+ V+
Sbjct: 179 SIDVTP-ELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQ 233
>gi|88797976|ref|ZP_01113563.1| peptide chain release factor 2 [Reinekea blandensis MED297]
gi|88779173|gb|EAR10361.1| peptide chain release factor 2 [Reinekea sp. MED297]
Length = 280
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
+ + L++ E ++ G D A + I+AGS G + WAE LL MY+RW +++G++ +
Sbjct: 21 LQRQLEELEFRRMFSGEMDPSNAYLDIQAGSGGTEAQDWAEMLLRMYLRWGEEKGFKTEL 80
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVP 184
++ G+KSAT+ FE EYAFG+L ETG H L+ F +G+ H + + V V P
Sbjct: 81 MEASAGDVAGIKSATVRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFSSVFVSP 139
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
++ + +++I+ DL ++ + G+ + + A I H PTGI +
Sbjct: 140 E-IDDNVEIEINPADLRIDVYRASGAGGQHVNRTESAVRITHEPTGIVTQ 188
>gi|418411279|ref|ZP_12984547.1| peptide chain release factor 2 [Staphylococcus epidermidis
BVS058A4]
gi|410892823|gb|EKS40614.1| peptide chain release factor 2 [Staphylococcus epidermidis
BVS058A4]
Length = 332
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + WA LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|182419781|ref|ZP_02951021.1| peptide chain release factor 2 [Clostridium butyricum 5521]
gi|237666525|ref|ZP_04526510.1| peptide chain release factor 2 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182376329|gb|EDT73911.1| peptide chain release factor 2 [Clostridium butyricum 5521]
gi|237657724|gb|EEP55279.1| peptide chain release factor 2 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 347
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV K + L+ + ++ ++ + E + I+ +
Sbjct: 28 FWDDSKKAEEVTKKSKLIKDKIENYDKLKSQLDDIDVLKDIMEEDDIESA--NEIIQTIK 85
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++ Y M LL G D A VT+ G G W E LL MY RW + +GY
Sbjct: 86 SIEHEIEDYNMKILLSGEYDKNNAIVTLHVGVGGTDANDWTEMLLRMYTRWCENKGYSVE 145
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EY +GYL E G H L+ N + + + A ++V+P
Sbjct: 146 TIDLIAGDEAGIKSVTLKVTGEYVYGYLKAEKGIHRLVRISPYNANGKRQTSFASMEVLP 205
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L D+ I +DL + S G+ + A I HIPTGI V+
Sbjct: 206 -ELTKEQDITIRPDDLKVDTYRSSGSGGQHINKTDSAVRITHIPTGIVVQ 254
>gi|296452520|ref|ZP_06894217.1| peptide chain release factor RF2 [Clostridium difficile NAP08]
gi|296881068|ref|ZP_06905011.1| peptide chain release factor RF2 [Clostridium difficile NAP07]
gi|296258625|gb|EFH05523.1| peptide chain release factor RF2 [Clostridium difficile NAP08]
gi|296427934|gb|EFH13838.1| peptide chain release factor RF2 [Clostridium difficile NAP07]
Length = 338
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D + VL + L ++L+ +LK L E+ +++ ++ +E D + +
Sbjct: 15 DFWNDNEVAQRVLQENKSLKETLEEYESLKSL---LEDIEVLIEIG-LEEEDDSVERDIE 70
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
++ + + L + ++ LL G D A ++I AG+ G+ + WA+ LL MY+RW++ +G
Sbjct: 71 KSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRWSESKG 130
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATLA 178
Y+ +++D G+K+ATI E A+GYL E G H L+ P+G + A
Sbjct: 131 YKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSG--KRHTSFA 188
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+DV P L+ + +++I+ DL + + G+ + A I HIPTG+ V+
Sbjct: 189 SIDVTP-ELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQ 243
>gi|398794940|ref|ZP_10554901.1| peptide chain release factor 2 [Pantoea sp. YR343]
gi|398207639|gb|EJM94386.1| peptide chain release factor 2 [Pantoea sp. YR343]
Length = 364
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ + + A VV L + E+ + + LA +EA D F A A
Sbjct: 44 DVWNEPERAQALGKERASLEAVVETLDHMTQGLEDVQGLLDLA-VEADDEETFNEAV-AE 101
Query: 66 LDVSKL-LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LD ++ L + E ++ G D + I+AGS G + WA LL MY+RWA+ +GY+
Sbjct: 102 LDALEVKLGELEFRRMFSGEYDSADCYMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGYK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++++ + G KSATI+ +YAFG+L ETG H L+ F +G H + + V
Sbjct: 162 TEIIEESDGEVAGTKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSVF 220
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P ++ + D+ I+ DL ++ + G+ + + A I H+PT I V+
Sbjct: 221 IYPE-VDDNIDIDINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQ 272
>gi|168177506|ref|ZP_02612170.1| peptide chain release factor 2 [Clostridium botulinum NCTC 2916]
gi|421839233|ref|ZP_16272865.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001627]
gi|182671219|gb|EDT83193.1| peptide chain release factor 2 [Clostridium botulinum NCTC 2916]
gi|409735367|gb|EKN36957.1| peptide chain release factor 2 [Clostridium botulinum CFSAN001627]
Length = 325
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++V+P L +++I EDL + + G+ + + A I H+PTGI V+
Sbjct: 175 SFASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQ 232
>gi|325292702|ref|YP_004278566.1| peptide chain release factor 2 [Agrobacterium sp. H13-3]
gi|325060555|gb|ADY64246.1| peptide chain release factor 2 [Agrobacterium sp. H13-3]
Length = 342
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D T++ +++ + +N +K L + ++ + +L EME D + K A A
Sbjct: 10 LWNDATEAQKLMRERQQLDDSINGVKALEQQLKDNVELIELGEMEGDDE-IVKDAEDALK 68
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++ ++ +L G D + + +G+ G + WA LL MY RWAD+EG++
Sbjct: 69 ALRSEANRRQVEAMLSGEADSNDTYLEVHSGAGGTESQDWANMLLRMYTRWADREGFKVE 128
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V++ + G+KSATI + AFG+L E+G H L+ + + + + V V P
Sbjct: 129 VLEVHDGEEAGIKSATILVKGHNAFGWLKTESGVHRLVRISPYDSNARRHTSFSSVWVYP 188
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ ++ S + I++ D + S G+ + A I HIPTGIAV
Sbjct: 189 V-VDDSIQIDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIAV 236
>gi|153932889|ref|YP_001382578.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC
19397]
gi|153936079|ref|YP_001386131.1| peptide chain release factor 2 [Clostridium botulinum A str. Hall]
gi|152928933|gb|ABS34433.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC
19397]
gi|152931993|gb|ABS37492.1| peptide chain release factor 2 [Clostridium botulinum A str. Hall]
Length = 325
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++V+P L +++I EDL + + G+ + + A I H+PTGI V+
Sbjct: 175 SFASIEVLPE-LTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQ 232
>gi|16130793|ref|NP_417367.1| peptide chain release factor RF-2 [Escherichia coli str. K-12
substr. MG1655]
gi|170082452|ref|YP_001731772.1| peptide chain release factor 2 [Escherichia coli str. K-12 substr.
DH10B]
gi|238902016|ref|YP_002927812.1| peptide chain release factor 2 [Escherichia coli BW2952]
gi|386594374|ref|YP_006090774.1| hypothetical protein [Escherichia coli DH1]
gi|387622566|ref|YP_006130194.1| peptide chain release factor RF-2 [Escherichia coli DH1]
gi|388478900|ref|YP_491092.1| peptide chain release factor RF-2 [Escherichia coli str. K-12
substr. W3110]
gi|2507293|sp|P07012.3|RF2_ECOLI RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|229576667|sp|B1XEH8.1|RF2_ECODH RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|259585244|sp|C5A0G3.1|RF2_ECOBW RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|28373696|pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
gi|2367172|gb|AAC75929.1| peptide chain release factor RF-2 [Escherichia coli str. K-12
substr. MG1655]
gi|85675703|dbj|BAE76956.1| peptide chain release factor RF-2 [Escherichia coli str. K12
substr. W3110]
gi|169890287|gb|ACB03994.1| peptide chain release factor RF-2 [Escherichia coli str. K-12
substr. DH10B]
gi|238861985|gb|ACR63983.1| peptide chain release factor RF-2 [Escherichia coli BW2952]
gi|260448063|gb|ACX38485.1| hypothetical protein EcDH1_0801 [Escherichia coli DH1]
gi|315137490|dbj|BAJ44649.1| peptide chain release factor RF-2 [Escherichia coli DH1]
gi|228558|prf||1806195A peptide chain-releasing factor:ISOTYPE=2
Length = 365
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|261855042|ref|YP_003262325.1| hypothetical protein Hneap_0421 [Halothiobacillus neapolitanus c2]
gi|261835511|gb|ACX95278.1| hypothetical protein Hneap_0421 [Halothiobacillus neapolitanus c2]
Length = 365
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 19/236 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEM--EAIDYGLFKRAYR 63
++W+DP ++ + + A +VV+ L ++ A+ A L EM E D +
Sbjct: 45 DVWNDPARAQALGKERASLERVVHTLANM---AQGLNDNADLLEMAAEEDDEATVASIEK 101
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ K + E ++ G D A + I++G+ G + WA L+ MY+RW D+ G+
Sbjct: 102 DVVEFEKQIADLEFRRMFSGEMDESNAYLDIQSGAGGTESQDWASILMRMYLRWGDRRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ V++ + G+KSATI FE EYAFG+L E G H L+ F + + H + A V
Sbjct: 162 KTEVMEMSDGEVAGIKSATIRFEGEYAFGWLRTEIGVHRLVRKSPFDSDNRRH-TSFASV 220
Query: 181 DVVP-----LFLETSP-DLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V P + +E +P DL++ +F + G+ + + A H+PTG+ V
Sbjct: 221 FVSPEVDDNIEIEVNPADLRVD----VFRASGAGGQHVNRTESAVRFTHLPTGVVV 272
>gi|413938323|gb|AFW72874.1| hypothetical protein ZEAMMB73_942412 [Zea mays]
Length = 227
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 110 LLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP-- 167
LL MYVRW +K+ Y+ RVV+K + G+KSAT+E E YA+GYLSGE G H ++
Sbjct: 2 LLRMYVRWGEKQRYKTRVVEKSPGEQAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPF 61
Query: 168 NGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HI 224
N + + A V+V+PL E S + I +EDL S G+ Q++ K ++ HI
Sbjct: 62 NAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHI 121
Query: 225 PTGIAVR 231
PTGIAVR
Sbjct: 122 PTGIAVR 128
>gi|406926880|gb|EKD63006.1| hypothetical protein ACD_52C00001G0007, partial [uncultured
bacterium]
Length = 332
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 13/231 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW D + + ++ K+ D K + ++ L + + L+E ++ GL + A + +
Sbjct: 15 DLWKDQSYARSLMQKIGDIKKQILQVERL---TTDVSGLVDLSEDGSLVSGLDEEANKLA 71
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ +Q E+ L GP D A V I G G WA+ LL MY+R+ ++ Y
Sbjct: 72 GEI----EQLELVIYLNGPYDTRNAIVAIHPGQGGTEAMDWAQMLLRMYLRFCERWNYAT 127
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KS + +A+GYL GE G H L+ N + + A V+V+
Sbjct: 128 QVIDDTPGEEAGIKSVVFKVGGPHAYGYLKGEAGTHRLVRQSPFNADKLRQTSFALVEVL 187
Query: 184 PLFLETS-PDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P +E PD++I D DL F S S G+ A + H PTGI V
Sbjct: 188 PDLVEVDLPDIEIKDSDLEWQFFHSSSQGGQNVQKVSTAVRLTHKPTGIVV 238
>gi|366053902|ref|ZP_09451624.1| peptide chain release factor 2 [Lactobacillus suebicus KCTC 3549]
Length = 332
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+D K+ E++ + + + LR ++ ++ L + E+ D + +
Sbjct: 6 FWNDGQKAQELIGENNQLKEKRDTFVGLRDGVDDLRVTWSLLQEES-DADMQQEFDDQLQ 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
V + L+QY + +LL P D A + I G+ G + W E LL M+ RWA + +
Sbjct: 65 SVKQKLEQYRLEQLLNEPYDANNAILEIHPGAGGTESQDWGEMLLRMFTRWAGQHDFEVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
D + G+KS T+ + A+GYL E G H L+ F + H + A VDV+
Sbjct: 125 TADYEAGEEAGIKSVTLLIKGHNAYGYLRSEKGVHRLVRISPFDSAGRRH-TSFASVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P L+ S ++ ISD+DL +F S G+ + A I HIPTGI V
Sbjct: 184 PE-LDDSTNVDISDDDLRVDVFRSSGAGGQHINKTSSAVRITHIPTGIVV 232
>gi|293449213|ref|ZP_06663634.1| peptide chain release factor 2 [Escherichia coli B088]
gi|332280425|ref|ZP_08392838.1| peptide chain release factor RF-2 [Shigella sp. D9]
gi|291322303|gb|EFE61732.1| peptide chain release factor 2 [Escherichia coli B088]
gi|332102777|gb|EGJ06123.1| peptide chain release factor RF-2 [Shigella sp. D9]
Length = 332
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 12 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 68
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 69 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 128
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 129 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 187
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 188 FVYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 240
>gi|50086456|ref|YP_047966.1| peptide chain release factor 2 [Acinetobacter sp. ADP1]
gi|49532432|emb|CAG70144.1| peptide chain release factor 2 [Acinetobacter sp. ADP1]
Length = 337
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+D +++ + + + V+N L +L + E+AK + LA +EA D L
Sbjct: 18 IWNDQSRAQAMAKEKGELENVLNVLDNLAEQLEDAKAMLDLA-VEADDESLLVDVESELA 76
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
L + E ++ P D V I+AGS G + WA LL MY+RW ++ G++
Sbjct: 77 TAEDELAKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAE 136
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++++ G+KSATI E EYA+G+L E+G H L+ F +G+ H + + V V
Sbjct: 137 LMEESDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRH-TSFSAVFVS 195
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + +++I+ D+ + + G+ + A + H PTGI V
Sbjct: 196 P-EIDDNIEIEINPADVRTDTYRASGAGGQHINKTDSAVRLTHAPTGIVV 244
>gi|153938890|ref|YP_001389537.1| peptide chain release factor 2 [Clostridium botulinum F str.
Langeland]
gi|384460618|ref|YP_005673213.1| peptide chain release factor 2 [Clostridium botulinum F str.
230613]
gi|152934786|gb|ABS40284.1| peptide chain release factor 2 [Clostridium botulinum F str.
Langeland]
gi|295317635|gb|ADF98012.1| peptide chain release factor 2 [Clostridium botulinum F str.
230613]
Length = 325
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 2 VRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEM-EAIDYGL 57
++N N W+D ++ ++ + L D L N L++ + I L EM D +
Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNT------IEDIISLCEMLSEEDDDM 54
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
K ++ + D++++ LL G D +T+ +G G + W + L MY RW
Sbjct: 55 KKEIISEYKNIKEETDRFKIETLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+KEG+ +++D ++ G+KS T++ E+ +GYL E G H L+ N + +
Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ A ++++P L +++I EDL + + G+ + + A I H+PTGI V+
Sbjct: 175 SFASIEILPE-LTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQ 232
>gi|406993330|gb|EKE12494.1| hypothetical protein ACD_13C00193G0004 [uncultured bacterium]
Length = 349
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 21/239 (8%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
V + NLW DP + V +L+D K + ++ DL E K + +E A
Sbjct: 35 VSDPNLWSDPDNARNVTQELSDLKKELESITDLSETLEILKQVEDESE-----------A 83
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
+A ++++L E+ L G D + A V+I AG G W L MY+R+ ++
Sbjct: 84 AKAEKELAEL----ELMSYLSGDYDSKNALVSIHAGQGGTEAMDWTGMLYRMYLRFCERR 139
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
G+ +D + G+KS T + YA+GYL E G H L+ N + + A
Sbjct: 140 GWSTEGIDYTAGEEAGIKSVTFKVVGRYAYGYLKNEAGTHRLVRQSPFNADKLRQTSFAL 199
Query: 180 VDVVPLFLETS-PDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGTT 234
V+V+P ET D+QI DEDL + G Q++ K A ++ HIP+GI + +T
Sbjct: 200 VEVMPELEETDMKDIQIKDEDLDWQFIHAGGHGGQNVNKVATAVRLTHIPSGIVITAST 258
>gi|291523975|emb|CBK89562.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
rectale DSM 17629]
Length = 330
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP KS + +L V L+ + E+ + + ++ E D L +
Sbjct: 5 DFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEMG-YEENDESLIPEIQQML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D D M LL G D A + + AG+ G WA L MY +WADK+G+
Sbjct: 64 DDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWAAMLFRMYSKWADKKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D+++ DED+ + S G+ + A I H P+GI V+
Sbjct: 184 P-DIEEDLDIEVKDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQ 233
>gi|218555439|ref|YP_002388352.1| peptide chain release factor 2 [Escherichia coli IAI1]
gi|226739127|sp|B7LYF5.1|RF2_ECO8A RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|218362207|emb|CAQ99825.2| peptide chain release factor RF-2 [Escherichia coli IAI1]
Length = 365
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|406964626|gb|EKD90335.1| hypothetical protein ACD_31C00008G0007 [uncultured bacterium]
Length = 355
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W+DP +++ + +L+D +K ++ L + + A I++ EM+ + +
Sbjct: 43 FWNDPKQASIISRQLSDKIKQKEIIESLEQRIKNALEISEEHEMQ-------DELSKETS 95
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ KL+ + E+ L GP+D A +++ +G+ G+ WA+ L MY R+ +K+ ++
Sbjct: 96 QLEKLISELELKLFLSGPHDSSEAILSVHSGAGGVEAMDWAQMLSRMYQRYFEKKDWQFE 155
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D+ + G+K+ ++ YA+G L E G H L+ N + + A V+V+P
Sbjct: 156 ISDESAGEEAGIKTMSMIVHSPYAYGLLKAEAGTHRLVRQSPFNADHLRQTSFALVEVLP 215
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E ++++SDEDL F S G+ + A + H PTGI V
Sbjct: 216 I-IEHQEEVEVSDEDLEFEAFRSGGAGGQNVNKVSTAVRLVHKPTGIVV 263
>gi|342215025|ref|ZP_08707694.1| peptide chain release factor 2 [Veillonella sp. oral taxon 780 str.
F0422]
gi|341590131|gb|EGS33380.1| peptide chain release factor 2 [Veillonella sp. oral taxon 780 str.
F0422]
Length = 330
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 5/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP + ++ + V K L EEAKL+ ++A ++ D +
Sbjct: 5 DFWNDPDSARDISQEATQLKDAVEGYKKLVTDIEEAKLMLEMA-IDEEDVSMEGELTTMV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E+ LL G D A +T AG+ G + W L+ MY+RWA+K+GY
Sbjct: 64 EQLTHEVEHREVLLLLSGEYDKNNAILTFHAGAGGTEAQDWCSMLIRMYLRWAEKQGYSI 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVV 183
++D+ G+KSAT + E AFGY+ E G H L+ P S T C VDV+
Sbjct: 124 SLMDEQVGDEAGIKSATFLIKGENAFGYMKSEKGVHRLVRISPFDSAARRHTSFCAVDVM 183
Query: 184 PLFLETSP-DLQISDEDL-LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ET +L + D + + + G+ + A + HIPTGI V+
Sbjct: 184 PEIDETVEINLDMKDVQVDTYRASGAGGQHINKTDSAVRMTHIPTGIVVQ 233
>gi|157162351|ref|YP_001459669.1| peptide chain release factor 2 [Escherichia coli HS]
gi|166977373|sp|A8A432.1|RF2_ECOHS RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|157068031|gb|ABV07286.1| peptide chain release factor 2 [Escherichia coli HS]
Length = 365
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|93005664|ref|YP_580101.1| peptide chain release factor 2 [Psychrobacter cryohalolentis K5]
gi|92393342|gb|ABE74617.1| bacterial peptide chain release factor 2 (bRF-2) [Psychrobacter
cryohalolentis K5]
Length = 349
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 11/236 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+ N LW+DP ++ ++ + + V++ + L E+A + +LA +EA D L
Sbjct: 25 LENPELWNDPERATKINKEKSQLDGVIDVVVSLETTLEDASAMLELA-VEAEDESLLADV 83
Query: 62 YRASLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+A LD K + E ++ G D + I++GS G + WAE LL MY RWA+
Sbjct: 84 -QAELDNAEKRVADLEFRRMFSGEMDPNNCYLDIQSGSGGTEAQDWAEMLLRMYTRWAEA 142
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G++ V++ G+KSATIE + YAFG+L E G H L+ F + + H +
Sbjct: 143 HGFKVEVIEVSSGSVAGIKSATIEIKGNYAFGWLRTEIGVHRLVRKSPFDSNNGRH-TSF 201
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V V P ++ + ++ I+ DL + S G+ + A I H P+G+ V
Sbjct: 202 AAVFVSPE-IDDNIEIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHEPSGVVV 256
>gi|12321742|gb|AAG50902.1|AC069159_3 peptide chain release factor 2, putative [Arabidopsis thaliana]
Length = 524
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 117/256 (45%), Gaps = 34/256 (13%)
Query: 6 NLWDDPTKSNEV--------------------LVKLADSLKVVNALKDLRYKAEEA-KLI 44
+LWDDPT + ++ L++ D LK+ D ++ LI
Sbjct: 150 DLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKEENDSELESVGVLALI 209
Query: 45 AQLAEM----EAIDYGLF--KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGS 98
+Q M ++ G+ K +A +D+ ++ + E+ LL ND + ++AG+
Sbjct: 210 SQTLGMFSFSVSVSLGMINPKETLKALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGA 269
Query: 99 NGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGET 158
G WA ++ MY WA + + VVD+ + G+K ATI+ EYA+GY E
Sbjct: 270 GGTESNDWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEV 329
Query: 159 GAHCLIN---FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQ 212
G H L+ F +G H + A V V+P+ + S ++I+D DL F S G+
Sbjct: 330 GVHRLVRISPFDSGKRRH-TSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHA 388
Query: 213 SIAKPAACIQHIPTGI 228
+ A I HIPTGI
Sbjct: 389 NTTDSAVRIVHIPTGI 404
>gi|15833017|ref|NP_311790.1| peptide chain release factor 2 [Escherichia coli O157:H7 str.
Sakai]
gi|26249306|ref|NP_755346.1| peptide chain release factor 2 [Escherichia coli CFT073]
gi|30064203|ref|NP_838374.1| peptide chain release factor 2 [Shigella flexneri 2a str. 2457T]
gi|170018863|ref|YP_001723817.1| peptide chain release factor 2 [Escherichia coli ATCC 8739]
gi|170682178|ref|YP_001745044.1| peptide chain release factor 2 [Escherichia coli SMS-3-5]
gi|215488191|ref|YP_002330622.1| peptide chain release factor 2 [Escherichia coli O127:H6 str.
E2348/69]
gi|218550138|ref|YP_002383929.1| peptide chain release factor 2 [Escherichia fergusonii ATCC 35469]
gi|218559884|ref|YP_002392797.1| peptide chain release factor 2 [Escherichia coli S88]
gi|218691016|ref|YP_002399228.1| peptide chain release factor 2 [Escherichia coli ED1a]
gi|218696486|ref|YP_002404153.1| peptide chain release factor 2 [Escherichia coli 55989]
gi|218701600|ref|YP_002409229.1| peptide chain release factor 2 [Escherichia coli IAI39]
gi|218706397|ref|YP_002413916.1| peptide chain release factor 2 [Escherichia coli UMN026]
gi|253772268|ref|YP_003035099.1| peptide chain release factor 2 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162803|ref|YP_003045911.1| peptide chain release factor 2 [Escherichia coli B str. REL606]
gi|254289563|ref|YP_003055311.1| peptide chain release factor 2 [Escherichia coli BL21(DE3)]
gi|260845559|ref|YP_003223337.1| peptide chain release factor RF-2 [Escherichia coli O103:H2 str.
12009]
gi|260857014|ref|YP_003230905.1| peptide chain release factor 2 [Escherichia coli O26:H11 str.
11368]
gi|260869568|ref|YP_003235970.1| peptide chain release factor RF-2 [Escherichia coli O111:H- str.
11128]
gi|378711660|ref|YP_005276553.1| peptide chain release factor 2 [Escherichia coli KO11FL]
gi|387613515|ref|YP_006116631.1| peptide chain release factor 2 (RF-2) [Escherichia coli ETEC
H10407]
gi|387823480|ref|YP_006094281.1| peptide chain release factor RF2 [Escherichia coli BL21(DE3)]
gi|427806067|ref|ZP_18973134.1| peptide chain release factor RF-2 [Escherichia coli chi7122]
gi|427810660|ref|ZP_18977725.1| peptide chain release factor RF-2 [Escherichia coli]
gi|54039052|sp|P66024.1|RF2_ECO57 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|54039053|sp|P66025.1|RF2_SHIFL RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|54041596|sp|P66023.1|RF2_ECOL6 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|189040000|sp|B1ITB1.1|RF2_ECOLC RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226739125|sp|B7MM78.1|RF2_ECO45 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226739126|sp|B7NW32.1|RF2_ECO7I RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226739128|sp|B7N7D5.1|RF2_ECOLU RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226739129|sp|B1LR73.1|RF2_ECOSM RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|226739130|sp|B7LPA4.1|RF2_ESCF3 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|254790914|sp|B7UHU0.1|RF2_ECO27 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|254790915|sp|B7LF76.1|RF2_ECO55 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|254790916|sp|B7MZI9.1|RF2_ECO81 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|26109714|gb|AAN81919.1|AE016766_7 Peptide chain release factor 2 [Escherichia coli CFT073]
gi|13363235|dbj|BAB37186.1| peptide chain release factor RF-2 [Escherichia coli O157:H7 str.
Sakai]
gi|30042460|gb|AAP18184.1| peptide chain release factor RF-2 [Shigella flexneri 2a str. 2457T]
gi|169753791|gb|ACA76490.1| hypothetical protein EcolC_0818 [Escherichia coli ATCC 8739]
gi|170519896|gb|ACB18074.1| peptide chain release factor 2 [Escherichia coli SMS-3-5]
gi|215266263|emb|CAS10692.1| peptide chain release factor RF-2 [Escherichia coli O127:H6 str.
E2348/69]
gi|218353218|emb|CAU99134.1| peptide chain release factor RF-2 [Escherichia coli 55989]
gi|218357679|emb|CAQ90320.2| peptide chain release factor RF-2 [Escherichia fergusonii ATCC
35469]
gi|218366653|emb|CAR04407.2| peptide chain release factor RF-2 [Escherichia coli S88]
gi|218371586|emb|CAR19425.2| peptide chain release factor RF-2 [Escherichia coli IAI39]
gi|218428580|emb|CAR09507.2| peptide chain release factor RF-2 [Escherichia coli ED1a]
gi|218433494|emb|CAR14397.2| peptide chain release factor RF-2 [Escherichia coli UMN026]
gi|253323312|gb|ACT27914.1| hypothetical protein ECBD_0846 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974704|gb|ACT40375.1| peptide chain release factor 2 [Escherichia coli B str. REL606]
gi|253978870|gb|ACT44540.1| peptide chain release factor 2 [Escherichia coli BL21(DE3)]
gi|257755663|dbj|BAI27165.1| peptide chain release factor RF-2 [Escherichia coli O26:H11 str.
11368]
gi|257760706|dbj|BAI32203.1| peptide chain release factor RF-2 [Escherichia coli O103:H2 str.
12009]
gi|257765924|dbj|BAI37419.1| peptide chain release factor RF-2 [Escherichia coli O111:H- str.
11128]
gi|309703251|emb|CBJ02586.1| peptide chain release factor 2 (RF-2) [Escherichia coli ETEC
H10407]
gi|313848742|emb|CAQ33203.2| peptide chain release factor RF2 [Escherichia coli BL21(DE3)]
gi|323377221|gb|ADX49489.1| Peptide chain release factor 2 [Escherichia coli KO11FL]
gi|412964249|emb|CCK48177.1| peptide chain release factor RF-2 [Escherichia coli chi7122]
gi|412970839|emb|CCJ45491.1| peptide chain release factor RF-2 [Escherichia coli]
Length = 365
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|326794289|ref|YP_004312109.1| peptide chain release factor 2 [Marinomonas mediterranea MMB-1]
gi|326545053|gb|ADZ90273.1| Peptide chain release factor 2 [Marinomonas mediterranea MMB-1]
Length = 364
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+DP + ++ + + VV L +L E++K + +A +E D +
Sbjct: 45 IWNDPEYAQKLGKERSTLEAVVETLDNLESGVEDSKDLLDMA-VEEDDADSVEAVELELN 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + L + E ++ G D A + I++GS G + WA LL MY+RW + +G++
Sbjct: 104 DLDEQLAKLEFRRMFSGEMDANSAFLDIQSGSGGTEAQDWANMLLRMYLRWGEDKGFKVE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ + G+KSAT+ FE EYAFG+L ETG H L+ F +G+ H + A V +
Sbjct: 164 LMEVSEGEVAGIKSATVRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVFLS 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ + ++ I+ DL + S G+ + A I H+PT V+
Sbjct: 223 P-EIDDNVEIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVQ 272
>gi|260587039|ref|ZP_05852952.1| peptide chain release factor 2 [Blautia hansenii DSM 20583]
gi|331082810|ref|ZP_08331932.1| peptide chain release factor 2 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542529|gb|EEX23098.1| peptide chain release factor 2 [Blautia hansenii DSM 20583]
gi|330400139|gb|EGG79788.1| peptide chain release factor 2 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 372
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD+ +S +++ +L+ + L+ + EE +L+ I+ G +
Sbjct: 46 FWDNAERSQKMMKELSALKGDMEIYHKLQNQKEEIELM--------IEMGYEENDPSIVP 97
Query: 67 DVSKLLDQY-------EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
D+ ++LD++ + LL G D + A VT+ AG+ G WA L MY+RWAD
Sbjct: 98 DIQEMLDEFIQDFEHIRIKTLLSGEYDKDNAIVTLHAGAGGTESCDWASMLYRMYLRWAD 157
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
++G+ V+D G+KS T + E A+GYL E G H L+ N + + +
Sbjct: 158 RQGFSTEVLDYLDGDEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSF 217
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
DV+P +E D++I+ +DL + S G+ + A I H+PTGI V+
Sbjct: 218 VSCDVMP-DIEEDVDVEINPDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQ 273
>gi|255327042|ref|ZP_05368118.1| peptide chain release factor 2 [Rothia mucilaginosa ATCC 25296]
gi|255296259|gb|EET75600.1| peptide chain release factor 2 [Rothia mucilaginosa ATCC 25296]
Length = 375
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDD + +V L+ +N L+ L + ++ +++ +LAE E + L A R
Sbjct: 44 DLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVELAEAEDEETAAELLADAER 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 104 ECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+
Sbjct: 164 PTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E + ++I + ++ +F S G+ + A + H+PTGI V
Sbjct: 224 VIPL-IEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVV 274
>gi|422324518|ref|ZP_16405555.1| peptide chain release factor 2 [Rothia mucilaginosa M508]
gi|353344040|gb|EHB88353.1| peptide chain release factor 2 [Rothia mucilaginosa M508]
Length = 375
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDD + +V L+ +N L+ L + ++ +++ +LAE E + L A R
Sbjct: 44 DLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVELAEAEDEETAAELLADAER 103
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 104 ECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 163
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+
Sbjct: 164 PTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 223
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E + ++I + ++ +F S G+ + A + H+PTGI V
Sbjct: 224 VIPL-IEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVV 274
>gi|347530813|ref|YP_004837576.1| peptide chain release factor 2 [Roseburia hominis A2-183]
gi|345500961|gb|AEN95644.1| peptide chain release factor 2 [Roseburia hominis A2-183]
Length = 339
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+DP S + + +L V L + E+ + + ++ E D L
Sbjct: 5 DFWNDPEVSQKKMKELKSMKDDVATYASLTTQFEDIETLIEMG-YEENDATLIPEIEEML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + D LL G D + A V++ AG+ G WA L MY RWAD +GY
Sbjct: 64 TEFTTTYDAIRAKTLLSGEYDGDNAIVSLHAGAGGTESCDWAAMLYRMYTRWADDKGYSV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGEEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D++I+D+DL + S G+ + A I H+PTGI V+
Sbjct: 184 P-DIEEDLDVEINDDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQ 233
>gi|289450201|ref|YP_003475113.1| peptide chain release factor 2 [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184748|gb|ADC91173.1| peptide chain release factor 2 [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 369
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ EV KLA + V+ + L+ + ++ + L + E D +
Sbjct: 45 DFWNDQTKAQEVQTKLAGLQRKVDTYRHLQKEFDDIDTLIDLGQEEN-DGAVVAEVQTQF 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+L ++ + LL G D + I AG+ G + W E L MY RWA+ Y+
Sbjct: 104 NAFKELFNKLRLQTLLVGEYDRNNVILNIHAGAGGTEAQDWTEMLYRMYTRWAEDHDYQL 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D G+KS + E E A+GY+ E G H L+ + S + A V+V+
Sbjct: 164 KVLDILDGDEAGLKSVSFEIIGENAYGYMRSEMGVHRLVRISPFDASGRRHTSFASVEVL 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P L+ S + I+ +DL + S G+ + + A I HIPTG+ V
Sbjct: 224 PE-LDNSIQININPDDLRIDRYRSSGAGGQHVNKTESAIRITHIPTGVVV 272
>gi|407009068|gb|EKE24289.1| hypothetical protein ACD_6C00170G0001 [uncultured bacterium]
Length = 349
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+D +++ + + + V+N L L + E+A+ + LA +EA D L +
Sbjct: 30 IWNDQSRAQAMAKEKGELENVLNVLDRLSTQLEDAQALLDLA-VEADDESLLEDVQAELS 88
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L + E ++ P D + I+AGS G + WA LL MY+RW ++ G++
Sbjct: 89 TAEEELAKLEFRRMFNNPMDPNPCYLEIQAGSGGTEAQDWASMLLRMYLRWIERHGFKAE 148
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+++ G+KSATI E EYA+G+L E+G H L+ F +G+ H + + V V
Sbjct: 149 VMEESDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRH-TSFSAVFVS 207
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + +++I+ D+ + + G+ + A + H PTGI V
Sbjct: 208 P-EVDDNIEIEINPSDVRTDTYRASGAGGQHINKTDSAVRLTHAPTGIVV 256
>gi|387770358|ref|ZP_10126541.1| peptide chain release factor 2 [Pasteurella bettyae CCUG 2042]
gi|386904720|gb|EIJ69509.1| peptide chain release factor 2 [Pasteurella bettyae CCUG 2042]
Length = 364
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 17/236 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P K+ + L K +L+ VVN +K L E+ + +LA +E D F A
Sbjct: 44 DVWNNPEKA-QALGKERSALEIVVNTIKKLDQGLEDVDGLLELA-IEGEDEETFNEAVAE 101
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D+ K L+ E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 102 LEDLEKQLEILEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFK 161
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A
Sbjct: 162 TELMEVSDGDVAGLKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAF 220
Query: 182 VVPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P + DL+I ++ + G+ + + A I HIP+GI V+
Sbjct: 221 IYPEIDDDIDIEINPADLRID----VYRASGAGGQHVNRTESAVRITHIPSGIVVQ 272
>gi|350552635|ref|ZP_08921832.1| peptide chain release factor 2 [Thiorhodospira sibirica ATCC
700588]
gi|349793566|gb|EGZ47398.1| peptide chain release factor 2 [Thiorhodospira sibirica ATCC
700588]
Length = 364
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+DP ++ + + A VV + L EA+ + +LA++E D+
Sbjct: 44 DVWNDPERAQSLGRERAQLEDVVLGSQRLVSGLSEARELLELAQLEQ-DHDTVAAVQTDL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + E ++ G D A V I+AGS G + WA LL MY+RW ++ G++
Sbjct: 103 QGFERTVADLEFRRMFSGKMDANNAFVDIQAGSGGTEAQDWASMLLRMYLRWGEQRGFQT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ + G+KSATI+F+ +YAFG+L ETG H L+ F +G+ H + A V V
Sbjct: 163 EILELSDGEVAGIKSATIKFDGQYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFAAVFV 221
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P + DL+I + + G+ + + A I H+P+G+ V
Sbjct: 222 SPEIDDDIEIDINPADLRID----TYRASGAGGQHVNRTESAIRITHLPSGVVV 271
>gi|291531340|emb|CBK96925.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
siraeum 70/3]
Length = 370
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 17/233 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL-----FKR 60
+ W+D S ++ K+ + +V + + LR ++ + +LA+ E + L +
Sbjct: 45 DFWNDVENSQKISQKIGEDKNIVQSYEKLRESYDDVMTMLELAQEEDDESMLPEIQELAK 104
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+R L+ KL + LL G D A +T AG+ G + W E L MY WA++
Sbjct: 105 HFRTELESQKL------ATLLSGEFDHNNAILTFHAGAGGTEAQDWVEMLYRMYNHWAEQ 158
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G + V+D + G+KSA+I E A+GYL E G H L+ + S + A
Sbjct: 159 HGMKVTVLDYLDGEEAGIKSASILVEGRNAYGYLKSENGVHRLVRVSPFDSSGRRHTSFA 218
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
V+V+P E D++IS++++ ++ + G++ + A I HIPTGI
Sbjct: 219 SVEVMPEINE-DIDIEISEDEIKMDVYRASGAGGQKVNKTSSAVRITHIPTGI 270
>gi|283457761|ref|YP_003362349.1| protein chain release factor B [Rothia mucilaginosa DY-18]
gi|283133764|dbj|BAI64529.1| protein chain release factor B [Rothia mucilaginosa DY-18]
Length = 421
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 8/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYG--LFKRAYR 63
+LWDD + +V L+ +N L+ L + ++ +++ +LAE E + L A R
Sbjct: 90 DLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVELAEAEDEETAAELLADAER 149
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
++ L++ E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+K GY
Sbjct: 150 ECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAADFAEMLLRMYLRWAEKNGY 209
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVD 181
+V+D + G+KS T E YAFG LS E G H L+ + + + A V+
Sbjct: 210 PTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLVRISPFDNQGRRQTSFAAVE 269
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+PL +E + ++I + ++ +F S G+ + A + H+PTGI V
Sbjct: 270 VIPL-IEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMTHLPTGIVV 320
>gi|282875665|ref|ZP_06284536.1| peptide chain release factor 2 [Staphylococcus epidermidis SK135]
gi|417647622|ref|ZP_12297456.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU144]
gi|417656376|ref|ZP_12306063.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU028]
gi|417658298|ref|ZP_12307932.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU045]
gi|417910255|ref|ZP_12553982.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU037]
gi|417911683|ref|ZP_12555383.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU105]
gi|417914181|ref|ZP_12557834.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU109]
gi|418605505|ref|ZP_13168828.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU041]
gi|418608459|ref|ZP_13171654.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU057]
gi|418608727|ref|ZP_13171909.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU065]
gi|418611194|ref|ZP_13174289.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU117]
gi|418617972|ref|ZP_13180856.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU120]
gi|418625674|ref|ZP_13188316.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU126]
gi|418665846|ref|ZP_13227283.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU081]
gi|419768181|ref|ZP_14294313.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-250]
gi|419771088|ref|ZP_14297148.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-K]
gi|420166738|ref|ZP_14673419.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM088]
gi|420171417|ref|ZP_14677959.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM070]
gi|420172084|ref|ZP_14678599.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM067]
gi|420182478|ref|ZP_14688614.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM049]
gi|420187927|ref|ZP_14693942.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM039]
gi|420197770|ref|ZP_14703491.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM020]
gi|420201248|ref|ZP_14706873.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM018]
gi|420208222|ref|ZP_14713692.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM003]
gi|420212399|ref|ZP_14717750.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM001]
gi|420213593|ref|ZP_14718899.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05005]
gi|420216605|ref|ZP_14721809.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05001]
gi|281295692|gb|EFA88215.1| peptide chain release factor 2 [Staphylococcus epidermidis SK135]
gi|329723235|gb|EGG59765.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU144]
gi|329736827|gb|EGG73092.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU028]
gi|329737925|gb|EGG74149.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU045]
gi|341651092|gb|EGS74899.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU037]
gi|341652194|gb|EGS75983.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU105]
gi|341653265|gb|EGS77036.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU109]
gi|374401358|gb|EHQ72432.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU057]
gi|374402269|gb|EHQ73302.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU041]
gi|374407963|gb|EHQ78807.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU081]
gi|374409906|gb|EHQ80675.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU065]
gi|374817035|gb|EHR81225.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU120]
gi|374824089|gb|EHR88071.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU117]
gi|374835191|gb|EHR98814.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU126]
gi|383360392|gb|EID37788.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-250]
gi|383362059|gb|EID39416.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus
IS-K]
gi|394233111|gb|EJD78721.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM088]
gi|394238063|gb|EJD83547.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM070]
gi|394243555|gb|EJD88917.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM067]
gi|394250023|gb|EJD95225.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM049]
gi|394255569|gb|EJE00518.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM039]
gi|394265356|gb|EJE10013.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM020]
gi|394273154|gb|EJE17589.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM018]
gi|394279833|gb|EJE24130.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM001]
gi|394282096|gb|EJE26308.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIHLM003]
gi|394285169|gb|EJE29253.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05005]
gi|394291632|gb|EJE35427.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05001]
Length = 333
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 59
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 60 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 119
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 120 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 179
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 180 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 234
>gi|28373662|pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low
Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome
Length = 365
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|299535985|ref|ZP_07049304.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZC1]
gi|424739932|ref|ZP_18168347.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZB2]
gi|298728590|gb|EFI69146.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZC1]
gi|422946464|gb|EKU40873.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZB2]
Length = 328
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + +V++ + LK +VN KDL E + +L E + + +
Sbjct: 7 FWDD-QQGAQVIINEGNGLKAIVNEYKDLVETHENLDMTLELLREEPDEELQEELGKELA 65
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
K+ D +E+ LL GP D A + + G+ G + W LL MY RWA+K G++
Sbjct: 66 EFQQKMAD-FELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
VD G+KS T+ + AFGYL E G H L+ F + H + ++C DV
Sbjct: 125 ETVDYLPGDEAGIKSVTLSIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 183
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+P F + + ++ I EDL + + G+ + A I HIPTG V+
Sbjct: 184 MPEF-DDNIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTIVQ 234
>gi|386347018|ref|YP_006045267.1| Peptide chain release factor 2 [Spirochaeta thermophila DSM 6578]
gi|339411985|gb|AEJ61550.1| Peptide chain release factor 2 [Spirochaeta thermophila DSM 6578]
Length = 364
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 51/254 (20%)
Query: 6 NLWDDPTKSNEVLVKLADSLKV--------------VNALKDLRYKAEE---------AK 42
+LW+D + EVL +L LKV ++ L DL AEE +
Sbjct: 32 DLWNDRKHAEEVLSRLR-RLKVRYEGWASLVQEVEDIHTLYDL--AAEENDPSQEEEEEE 88
Query: 43 LIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGIC 102
L QLAE E R +R + + +LL D + A +TI AG+ G+
Sbjct: 89 LRQQLAEAE--------RKFR----------ELRLRELLNEEYDQKDAYLTIHAGAGGME 130
Query: 103 PEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHC 162
WA LL MY+RW +++G+ ++VD GG+KS T+E + +YAFGYL GE G H
Sbjct: 131 ACDWASMLLRMYLRWLERKGFSTQIVD-MVEDEGGIKSVTVEVKGDYAFGYLKGEAGVHR 189
Query: 163 LINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKP 217
L+ + S + A V V P+ +E ++ I EDL + S G+ + +
Sbjct: 190 LVRISPFDASGRRHTSFASVYVSPI-IEDDIEVDIRPEDLRIDTYRSQGAGGQHVNKTES 248
Query: 218 AACIQHIPTGIAVR 231
A I H+PTGI V+
Sbjct: 249 AVRITHLPTGIVVQ 262
>gi|147679087|ref|YP_001213302.1| protein chain release factor B [Pelotomaculum thermopropionicum SI]
gi|146275184|dbj|BAF60933.1| protein chain release factor B [Pelotomaculum thermopropionicum SI]
Length = 336
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 68 VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRV 127
V++ + + E++ LL GP D A V + AG+ G + W E LL MY RWA++ G++ V
Sbjct: 71 VAQKVAEMELTVLLSGPYDRGNAIVALHAGAGGTEAQDWVEMLLRMYTRWAERRGFKVEV 130
Query: 128 VDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPL 185
+D G KSATIE A+GYL E G H L+ + + + A VDV+P
Sbjct: 131 LDLLPGDEAGTKSATIEVIGPNAYGYLRSEKGVHRLVRISPFDAAGRRHTSFASVDVLP- 189
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
++ D++I+ +DL F S G+ + A I H+PTGI V
Sbjct: 190 EVDDEVDVKINPDDLKIDTFRSGGAGGQHVNKTDSAVRITHLPTGIVV 237
>gi|317507095|ref|ZP_07964856.1| peptide chain release factor 2 protein [Segniliparus rugosus ATCC
BAA-974]
gi|316254589|gb|EFV13898.1| peptide chain release factor 2 protein [Segniliparus rugosus ATCC
BAA-974]
Length = 372
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + EV LA + A+ LR + ++ ++ +LAE D G + A
Sbjct: 43 SLWEDQDRGQEVTSGLARRQATLRAVTALRSRLDDLHVLYELAE---DDSGAEGQEALAE 99
Query: 66 LDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
D + ++ E+ LL G D A VTI++G+ GI WA+ L+ MY+RWA++
Sbjct: 100 ADAERKALREDIETLEVRTLLNGEYDEREALVTIRSGAGGIDAADWAQMLMRMYIRWAER 159
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+ + D + G+KSAT + YA+G LS E G H L+ + + + A
Sbjct: 160 HKHPVEIYDISYAEEAGIKSATFAVKSAYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ + T+ ++I + ++ ++ S G+ + A + H+PTG+ V
Sbjct: 220 DVEVLPV-VGTTDHIEIPESEVRVDVYRSSGPGGQSVNTTDSAVRLTHLPTGVVV 273
>gi|410458996|ref|ZP_11312750.1| peptide chain release factor 2 [Bacillus azotoformans LMG 9581]
gi|409930702|gb|EKN67697.1| peptide chain release factor 2 [Bacillus azotoformans LMG 9581]
Length = 327
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 27/240 (11%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WDD + +V+ + NALKD+ E L +E + + L K Y
Sbjct: 5 NFWDDQQAAQQVINE-------TNALKDI--VGEYTALNESFDNLE-VTHELLKEEYDED 54
Query: 66 LD---------VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVR 116
L +S+ + Q+E+ LL P D A + + G+ G + W LL MY R
Sbjct: 55 LQKELEKEIKTLSESVSQFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSLLLRMYTR 114
Query: 117 WADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPH 173
WA+K+G++ +D G+KS T+ + A+GYL E G H L+ F H
Sbjct: 115 WAEKKGFKVETLDYLAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRH 174
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ ++C DV+P F E ++++ D DL + S G+ + A I H+PTGI V
Sbjct: 175 TSFVSC-DVMPEFNE-EIEIEVRDADLKIDTYRSTGAGGQHINTTDSAVRITHLPTGIVV 232
>gi|303279527|ref|XP_003059056.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458892|gb|EEH56188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 337
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 14/239 (5%)
Query: 6 NLWDDPTKSNEVLVKLAD---SLKVVNALKDLRYKAEEA-KLIAQLAEMEAIDYGLFKRA 61
LWDDP + V+ +LAD L++ A +D A A ++IA + + L
Sbjct: 21 TLWDDPKNAKAVMEQLADVREQLELAAAFEDKLGDARTALEMIADDPSSDVVPE-LASEI 79
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A + L+ +E +LL G D GA+V I AG G WAE+L + YV WA +
Sbjct: 80 SDAIASLEAALETWETRRLLVGTYDALGATVFINAGFGGFDAHEWAERLESCYVAWARRR 139
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPN--GSFP--HEATL 177
G+ RV + + G++S T+E + +A+GYL+ E GAH ++ G P +
Sbjct: 140 GFAVRVEARTPGEEVGLRSVTLEIDGRFAYGYLASEKGAHRMVRIGGVAGQTPRGRHSNF 199
Query: 178 ACVDVVPLFLETSPDLQISDEDLL-----FSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
VDV P E + + S D + S G+ + + A ++H+PTGI VR
Sbjct: 200 VAVDVAPTLEEKARSIHWSPYDRVRVITTMRSGGAGGQNVNKVETAVRMKHLPTGIVVR 258
>gi|57866389|ref|YP_188014.1| peptide chain release factor 2 [Staphylococcus epidermidis RP62A]
gi|71153101|sp|Q8CPZ1.2|RF2_STAES RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|71153102|sp|Q5HQX5.1|RF2_STAEQ RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|57637047|gb|AAW53835.1| peptide chain release factor 2 [Staphylococcus epidermidis RP62A]
Length = 371
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + + W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 39 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIE 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++
Sbjct: 98 LEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 NGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
>gi|407004581|gb|EKE20931.1| hypothetical protein ACD_7C00427G0007 [uncultured bacterium]
Length = 309
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 110/211 (52%), Gaps = 9/211 (4%)
Query: 25 LKVVNALKDLRYKAEE-AKLIAQLAE-MEAIDYGLFKRAYRASL-DVSKLLDQYEMSKLL 81
++ + LK + K EE +K I L E +E +D K+ + + K L E++ LL
Sbjct: 2 MQEIETLKKIVKKVEENSKQIDYLLEILEVVDSEKEKKDLSEQIISLEKNLKDLEVAALL 61
Query: 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSA 141
D A ++I AG+ G+ + W+E LL MY+R+A + ++ +++D+ + G+KSA
Sbjct: 62 SEEYDKNNAIISIHAGAGGVDAQDWSEMLLRMYLRYAQIKNFKTKIIDESRGQEAGIKSA 121
Query: 142 TIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLETSPDLQISDED 199
T E E +A+G L GE G H L+ N + + A V+++P+ +E+ ++QI ED
Sbjct: 122 TFEVEGLHAYGLLKGEAGTHRLVRLSPFNSDNLRQTSFALVEILPV-IESLKEVQIKTED 180
Query: 200 L---LFSSPSLPGERQSIAKPAACIQHIPTG 227
L F S G+ + A I H+PT
Sbjct: 181 LKIDTFRSSGAGGQSVNTTDSAVRITHLPTN 211
>gi|167750196|ref|ZP_02422323.1| hypothetical protein EUBSIR_01170 [Eubacterium siraeum DSM 15702]
gi|167656758|gb|EDS00888.1| peptide chain release factor 2 [Eubacterium siraeum DSM 15702]
gi|291556130|emb|CBL33247.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
siraeum V10Sc8a]
Length = 370
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 17/233 (7%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL-----FKR 60
+ W+D S ++ K+ + +V + + LR ++ + +LA+ E + L +
Sbjct: 45 DFWNDVENSQKISQKIGEDKNIVQSYEKLRESYDDVMTMLELAQEEDDESMLPEIQELAK 104
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+R L+ KL + LL G D A +T AG+ G + W E L MY WA++
Sbjct: 105 HFRTELESQKL------ATLLSGEFDHNNAILTFHAGAGGTEAQDWVEMLYRMYNHWAEQ 158
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
G + V+D + G+KSA+I E A+GYL E G H L+ + S + A
Sbjct: 159 HGMKVTVLDYLDGEEAGIKSASILVEGRNAYGYLKSENGVHRLVRVSPFDSSGRRHTSFA 218
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
V+V+P E D++IS++++ ++ + G++ + A I HIPTGI
Sbjct: 219 SVEVMPEINE-DIDIEISEDEIKMDVYRASGAGGQKVNKTSSAVRITHIPTGI 270
>gi|116492233|ref|YP_803968.1| peptide chain release factor 2 [Pediococcus pentosaceus ATCC 25745]
gi|116102383|gb|ABJ67526.1| bacterial peptide chain release factor 2 (bRF-2) [Pediococcus
pentosaceus ATCC 25745]
Length = 343
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ ++ V+ + + + + K+L E ++ A+L EME D + + +
Sbjct: 16 NFWDNQEQAQIVINENNELKQKYDNFKNLTDHVENLEVTAELLEME--DDPDVQSEFESE 73
Query: 66 LDVS-KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + KLL Y + LL G D A + I G+ G + W LL MY RWA++ ++
Sbjct: 74 LAATAKLLQDYRLGLLLNGKYDANNAIIEIHPGAGGTESQDWGSMLLRMYTRWAEQHQFK 133
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++ D + G+ S T+ A+GYL E G H L+ F + H + A VD
Sbjct: 134 VQIEDYQAGEVAGISSVTMRIVGHNAYGYLRSEKGVHRLVRLSPFDSAGRRH-TSFASVD 192
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P L+ S ++ I+ +DL ++ S G+ + A I H+PTGI V
Sbjct: 193 VMPE-LDDSVEVNINQDDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVV 243
>gi|77164311|ref|YP_342836.1| peptide chain release factor 2 [Nitrosococcus oceani ATCC 19707]
gi|254433270|ref|ZP_05046778.1| peptide chain release factor 2 [Nitrosococcus oceani AFC27]
gi|76882625|gb|ABA57306.1| bacterial peptide chain release factor 2 (bRF-2) [Nitrosococcus
oceani ATCC 19707]
gi|207089603|gb|EDZ66874.1| peptide chain release factor 2 [Nitrosococcus oceani AFC27]
Length = 331
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WD+P ++ ++ + A VV L +L + + + + +LA ME D + A
Sbjct: 11 SVWDEPERAQQLGQERAQLQSVVAPLAELGGEIIQVRELFELA-MEEGDEDTAQEII-AE 68
Query: 66 LDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
LDV + L + E ++ G D A + I+AGS G + WA LL MY+RW +K ++
Sbjct: 69 LDVVEQRLAKLEFQRMFAGEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWGEKHSFK 128
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+ + + G+KSA I FE EYAFG+L ETG H L+ F +G+ H + A V
Sbjct: 129 TELTEVSEGEVAGIKSAAIRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFASVF 187
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL + + G+ + A I H+P+ + V+
Sbjct: 188 VYPE-VDERIDIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHLPSSLVVQ 239
>gi|389862939|ref|YP_006365179.1| peptide chain release factor 2 [Modestobacter marinus]
gi|388485142|emb|CCH86686.1| Peptide chain release factor 2 [Modestobacter marinus]
Length = 370
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + + +L+ + +++LR + ++ L+ ++A E D R
Sbjct: 43 DLWNDVEAAQALTSRLSYLQGDLRRVEELRSRLDDVGLLHEMAAEEG-DEATTAETEREL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +LD+ E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ Y
Sbjct: 102 QSIRTVLDELEVRTLLSGEYDAREALVTIRSEAGGVDAADFAEMLMRMYLRWAERHKYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDVSYAEEAGIKSATFAVKQPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ +F S G+ + A + HIPTGI V
Sbjct: 222 PV-VEQTDHVDIPENEIRVDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVV 270
>gi|300087667|ref|YP_003758189.1| peptide chain release factor 2 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527400|gb|ADJ25868.1| peptide chain release factor 2 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 327
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 13/240 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI-DYGLFK 59
M+ W+D S +V+ +L K V + L + + +LAE++A+ D + +
Sbjct: 1 MITIDGFWEDSDNSQKVMRRLTGLKKTVEQWRSLERR------LNELAELDALGDPEMAQ 54
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+ VS LD+ E G D A ++I AG+ G+ + WAE LL MYV+W +
Sbjct: 55 DVDAETEAVSDELDRLEFELSYSGEYDERNALLSIHAGAGGVESQDWAEMLLAMYVKWGE 114
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATL 177
+ Y +++ G+KS T EF YA+G L E G H LI + +
Sbjct: 115 RRDYDVEILETSAGDEAGIKSVTAEFRGRYAYGNLRSEHGVHRLIRLSPFDSDHARHTSF 174
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTT 234
A V+V+P +E +++I+ +D+ F + G+ A + H P+GI V T
Sbjct: 175 ALVEVMP-EVEEDAEVEINPDDIKLEAFRASGAGGQNVQKVSSAVRLTHTPSGIVVTAQT 233
>gi|289208167|ref|YP_003460233.1| hypothetical protein TK90_0982 [Thioalkalivibrio sp. K90mix]
gi|288943798|gb|ADC71497.1| conserved hypothetical protein [Thioalkalivibrio sp. K90mix]
Length = 364
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 125/236 (52%), Gaps = 11/236 (4%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+ N ++W+DP ++ + + A +V ++++ + ++++ + ++AE A D A
Sbjct: 40 LENPDIWNDPDRAQALGKERAQLENIVVNIREIGTQLDDSRDLLEMAE--ADDDAETASA 97
Query: 62 YRASLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
A ++ ++ ++ E ++ G D A + I+AGS G + WA LL MY+RWA+
Sbjct: 98 VEADVEALTARVEALEFRRMFSGDMDEANAYLDIQAGSGGTEAQDWANILLRMYLRWAEA 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATL 177
G++ +++ + G+KSAT+ E EYAFG+L ETG H L+ F +G+ H +
Sbjct: 158 HGFKTEIIELSEGEVAGIKSATVRIEGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSF 216
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V P ++ S +++I+ DL + + G+ + + A I H P+GI V
Sbjct: 217 ASVFASPE-VDDSFEIEINPADLRVDTYRASGAGGQHVNRTESAIRITHEPSGIVV 271
>gi|444429655|ref|ZP_21224837.1| peptide chain release factor 2 [Gordonia soli NBRC 108243]
gi|443889316|dbj|GAC66558.1| peptide chain release factor 2 [Gordonia soli NBRC 108243]
Length = 381
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 14/234 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA----Y 62
LW+D + V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 52 LWNDQEHAQRVTSELSHAQAEYRRVSELRQRLDDLPVLYELAEAEEGDARTEAVADADSE 111
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
RASL ++ E+ +L G D A V I++G+ G+ WA+ L+ MY+RWA++
Sbjct: 112 RASLRAD--IEAMEVKTMLAGEYDQRDALVNIRSGAGGVDAADWAQMLMRMYIRWAEQHS 169
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y V D + G+KSAT + Y +G LS E G H L+ F N S + + A
Sbjct: 170 YGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAE 228
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+++P+ +ET+ + I + D+ ++ S G+ + A + H PTGI V
Sbjct: 229 VEILPV-VETTDHIDIPETDIRVDVYRSSGPGGQSVNTTDSAVRLTHTPTGIVV 281
>gi|386389948|ref|ZP_10074745.1| peptide chain release factor 2 [Haemophilus paraphrohaemolyticus
HK411]
gi|385693990|gb|EIG24616.1| peptide chain release factor 2 [Haemophilus paraphrohaemolyticus
HK411]
Length = 355
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 17/235 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W+ P K+ + L K +L+ VVN +K L E+ + + +LA +EA D F A +
Sbjct: 36 IWNTPEKA-QALGKERSALEMVVNTIKVLDQGIEDVEGLIELA-VEAEDEETFNEAQAEA 93
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 94 GELEAKLAKLEFQRMFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKA 153
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A V
Sbjct: 154 ELIEVSDGDVAGLKSATIRISGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 212
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 213 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 263
>gi|257453984|ref|ZP_05619260.1| peptide chain release factor 2 [Enhydrobacter aerosaccus SK60]
gi|257448649|gb|EEV23616.1| peptide chain release factor 2 [Enhydrobacter aerosaccus SK60]
Length = 349
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 13/237 (5%)
Query: 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRA 61
+ N LW+DP ++ ++ + + V+ + L K E+AK + LA +EA D L
Sbjct: 25 LENPELWNDPERATKISKEKSQLDNVIGVITALDDKLEDAKAMIDLA-VEADDATLLADV 83
Query: 62 YRASLDVS--KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWAD 119
+A LD + K+ D E ++ G D V I++GS G + WAE LL MY+RW +
Sbjct: 84 -QAELDEAEAKVAD-LEFKRMFSGEMDGNNCYVDIQSGSGGTEAQDWAEMLLRMYLRWCE 141
Query: 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEAT 176
G++ +++ G+KSA+I + +YAFG+L E G H L+ F + + H +
Sbjct: 142 SHGFKAEIMELSAGGVAGIKSASIHVKGDYAFGWLRTEIGVHRLVRKSPFDSNNGRH-TS 200
Query: 177 LACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
A V V P ++ + ++ I+ DL + S G+ + A I H PTGI V
Sbjct: 201 FAAVFVSP-EIDDNIEIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHQPTGIVV 256
>gi|421895161|ref|ZP_16325636.1| peptide chain release factor 2 [Pediococcus pentosaceus IE-3]
gi|385271930|emb|CCG91008.1| peptide chain release factor 2 [Pediococcus pentosaceus IE-3]
Length = 332
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ ++ V+ + + + + K+L E ++ A+L EME D + + +
Sbjct: 5 NFWDNQEQAQIVINENNELKQKYDNFKNLTDHVENLEVTAELLEME--DDPDVQSEFESE 62
Query: 66 LDVS-KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L + KLL Y + LL G D A + I G+ G + W LL MY RWA++ ++
Sbjct: 63 LAATAKLLQDYRLGLLLNGKYDANNAIIEIHPGAGGTESQDWGSMLLRMYTRWAEQHQFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++ D + G+ S T+ A+GYL E G H L+ F + H + A VD
Sbjct: 123 VQIEDYQAGEVAGISSVTMRIVGHNAYGYLRSEKGVHRLVRLSPFDSAGRRH-TSFASVD 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P L+ S ++ I+ +DL ++ S G+ + A I H+PTGI V
Sbjct: 182 VMPE-LDDSVEVNINQDDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVV 232
>gi|406671406|ref|ZP_11078645.1| peptide chain release factor 2 [Facklamia hominis CCUG 36813]
gi|405580656|gb|EKB54715.1| peptide chain release factor 2 [Facklamia hominis CCUG 36813]
Length = 344
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD +++ ++ ++ D NA L E+ ++ +L E E +D L++ +
Sbjct: 20 FWDDQSQAQSIIQEMNDKESTRNAFLKLVSDWEDLQVEVELYE-ETLDRPLWEEIEKNCY 78
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L Y++S LL +D A + I G+ G + W + LL MY RWA + Y
Sbjct: 79 KFEQNLKAYQLSLLLSEEHDHCNAILEIHPGAGGKESQDWGQMLLRMYERWASQHDYHIS 138
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF-PNGSFPHEATLAC-VDVVP 184
V+D + G+KS T+E + A+G+L E G H LI P S T C +DV P
Sbjct: 139 VIDYQNGEEAGIKSVTLEVSGDKAYGFLKSEKGVHRLIRISPFDSNGKRHTSFCSIDVTP 198
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ ++ S ++ I+ +DL + + G+ + A I HIPTGI +
Sbjct: 199 M-IDDSIEIHINQDDLRIDTYRASGAGGQHINKTSSAVRITHIPTGIVTQ 247
>gi|188997267|ref|YP_001931518.1| peptide chain release factor 2 [Sulfurihydrogenibium sp. YO3AOP1]
gi|229576671|sp|B2V5M0.1|RF2_SULSY RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|188932334|gb|ACD66964.1| peptide chain release factor 2 [Sulfurihydrogenibium sp. YO3AOP1]
Length = 369
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 27/240 (11%)
Query: 6 NLWDDPTKSNEVLVK---LADSL-------KVVNALKDLRYKAEEAKLIAQLAEMEAIDY 55
N W+D K+ E+ + L + L K VN L D L EME D
Sbjct: 44 NFWNDTKKAQEISSRRNYLGEKLEEILTVDKKVNNLLDY----------ITLLEMEE-DQ 92
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
L+ + ++ K + + E+ LL D + A +T++AGS G+ W E LL MY
Sbjct: 93 ELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNAILTVQAGSGGVEACDWTEMLLRMYT 152
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA+K GY+ +VD GVKSAT+ + YA+GYL GE G H L+ + +
Sbjct: 153 RWAEKRGYQVELVDFQPDDVAGVKSATLIIKGPYAYGYLKGEQGVHRLVRISPFDANKRR 212
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + V V+P ++ ++I++EDL + + G+ + A I HIPTGI V
Sbjct: 213 HTSFSAVSVIP-EIDEDIKVEINEEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVV 271
>gi|423088861|ref|ZP_17077231.1| peptide chain release factor 2 [Clostridium difficile 70-100-2010]
gi|357558975|gb|EHJ40444.1| peptide chain release factor 2 [Clostridium difficile 70-100-2010]
Length = 338
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 19/237 (8%)
Query: 6 NLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D + VL + L ++L+ +LK L E+ +++ ++ E D +R
Sbjct: 15 DFWNDNEVAQRVLQENKSLKETLEEYESLKSL---LEDIEVLIEIGLEE--DNDSVERDI 69
Query: 63 RASLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
S++ + + L + ++ LL G D A ++I AG+ G+ + WA+ LL MY+RW++ +
Sbjct: 70 EKSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRWSESK 129
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINF----PNGSFPHEATL 177
GY+ +++D G+K+ATI E A+GYL E G H L+ P+G +
Sbjct: 130 GYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSG--KRHTSF 187
Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
A +DV P L+ + +++I+ DL + + G+ + A I HIPTG+ V+
Sbjct: 188 ASIDVTP-ELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQ 243
>gi|337286065|ref|YP_004625538.1| Peptide chain release factor 2 [Thermodesulfatator indicus DSM
15286]
gi|335358893|gb|AEH44574.1| Peptide chain release factor 2 [Thermodesulfatator indicus DSM
15286]
Length = 378
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 14/233 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WD + EVL + A ++ + + L + E+ +++ +L +E D K
Sbjct: 47 FWDRKD-AKEVLRERARLEDLLASWEKLEQEFEDTRVLFELG-VEEDDEETLKEVKARLK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ K +++ E+ L GP+D A VTI AG+ G + W E LL MY+RWA+K+G++ R
Sbjct: 105 NLEKTIEEEEVKLFLSGPHDASNAIVTIHAGAGGTEAQDWVEMLLRMYLRWAEKKGFKTR 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KS T E YA+G+L E+G H L+ + S + A V V+P
Sbjct: 165 IIDILPGEEAGIKSVTFMVEGPYAYGHLKAESGIHRLVRISPFDASGRRHTSFASVSVIP 224
Query: 185 LFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
E DL+I + G+ + + A I H+PTGI V+
Sbjct: 225 EIEEDIQIEIRPEDLKIE----TMRASGHGGQHVNKTESAVRITHLPTGIVVQ 273
>gi|304439754|ref|ZP_07399652.1| peptide chain release factor RF2 [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371741|gb|EFM25349.1| peptide chain release factor RF2 [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 368
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 9/231 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD + + + + + + LK L + K + ++ EME DY +K +
Sbjct: 47 FWDDTESAQKTIKEFNHYNRKIENLKSLTDEISSLKDLLEIMEMEG-DYSSYKDFKDDLI 105
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K + ++++ LL D + I AG+ G + WA LL MY R+ +++G+
Sbjct: 106 KLEKHAEDFKIATLLNDKYDDNDVILQIHAGAGGTEAQDWASMLLRMYTRYCEQKGFSAE 165
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
++D G+KSAT+ + + +GYL GE G H L+ F + H + + VDV
Sbjct: 166 ILDLQKEDEAGIKSATLLIKGDSCYGYLKGEKGVHRLVRISPFDSNKRRH-TSFSSVDVY 224
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P LE D+ I EDL + S G+ + A I HIPTG+ V+
Sbjct: 225 PE-LEDVEDVDIKPEDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVVQ 274
>gi|15803427|ref|NP_289460.1| peptide chain release factor 2 [Escherichia coli O157:H7 str.
EDL933]
gi|12517417|gb|AAG58019.1|AE005519_5 peptide chain release factor RF-2 [Escherichia coli O157:H7 str.
EDL933]
Length = 365
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSXSSAF 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 222 -VYP-EVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|157412537|ref|YP_001483403.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9215]
gi|157387112|gb|ABV49817.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9215]
Length = 354
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMSLVINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
+ L I ++DL + S G+ + + A I H+P+GI+VR T
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCT 256
>gi|452973508|gb|EME73330.1| peptide chain release factor 2 [Bacillus sonorensis L12]
Length = 327
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W D K+ + ++ A++LK VN K+L EE ++ L + E D L
Sbjct: 5 DFWGDQQKA-QTIINEANALKEYVNTYKELSESHEELQMTHDLLK-EDPDEDLQNELENE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKSLTKKFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P F E D++I ED+ + + G+ + A I H+PTG+ V
Sbjct: 182 VMPEFNE-EIDIEIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTGVIV 232
>gi|157693929|ref|YP_001488391.1| peptide chain release factor RF2 [Bacillus pumilus SAFR-032]
gi|157682687|gb|ABV63831.1| peptide chain release factor RF2 [Bacillus pumilus SAFR-032]
Length = 327
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W+D K+ V + A++LK VNA +L EE ++ L + E D L +
Sbjct: 5 DFWNDQQKAQGV-INEANALKDNVNAYHELSESHEELQMTHDLLK-EDYDEELHVELEKE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKNLTKQFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P F E D+ I ED+ + + G+ + A I HIPT + V
Sbjct: 182 VMPEFNE-EIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHIPTNVVV 232
>gi|417849938|ref|ZP_12495853.1| peptide chain release factor 2 [Streptococcus mitis SK1080]
gi|339455271|gb|EGP67878.1| peptide chain release factor 2 [Streptococcus mitis SK1080]
Length = 329
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 17/237 (7%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELV--AQ 64
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 65 LAELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI V+ T
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQST 237
>gi|58039738|ref|YP_191702.1| peptide chain release factor 2 [Gluconobacter oxydans 621H]
gi|58002152|gb|AAW61046.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Gluconobacter
oxydans 621H]
Length = 322
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +LAEME D L + A + +++ + + E+ LL G D V + AG+ G
Sbjct: 27 LVELAEMEG-DESLVQDAVQTLRAIAEDVRKREIESLLSGEADSNDCYVEVNAGAGGTEA 85
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WAE LL MY RWA++ GY+ ++ + G+KSATI+ A+G+L E G H L
Sbjct: 86 QDWAEMLLRMYTRWAEQHGYKVTFIEGSEGEQAGIKSATIQVSGPNAYGWLKTEAGVHRL 145
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPA 218
+ + + + + A V V P+ ++ S ++ I+D DL F + G+ + A
Sbjct: 146 VRISPFDAAARRQTSFASVWVYPV-VDDSIEIDINDSDLRVDTFRASGAGGQHVNKTDSA 204
Query: 219 ACIQHIPTGIAV 230
I HIPTGI V
Sbjct: 205 IRITHIPTGIVV 216
>gi|254526132|ref|ZP_05138184.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9202]
gi|221537556|gb|EEE40009.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9202]
Length = 354
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMTLVINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
+ L I ++DL + S G+ + + A I H+P+GI+VR T
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCT 256
>gi|52082063|ref|YP_080854.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319647929|ref|ZP_08002147.1| peptide chain release factor 2 [Bacillus sp. BT1B_CT2]
gi|404490944|ref|YP_006715050.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423684069|ref|ZP_17658908.1| peptide chain release factor 2 [Bacillus licheniformis WX-02]
gi|52005274|gb|AAU25216.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52349954|gb|AAU42588.1| peptide chain release factor 2 [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317390270|gb|EFV71079.1| peptide chain release factor 2 [Bacillus sp. BT1B_CT2]
gi|383440843|gb|EID48618.1| peptide chain release factor 2 [Bacillus licheniformis WX-02]
Length = 327
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
+ W D K+ + ++ A++LK VN K L EE ++ L + E D L
Sbjct: 5 DFWGDQQKA-QTIINEANALKDYVNTYKSLSESHEELQMTHDLLK-EDPDQDLQNELVNE 62
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
++K +++E+ LL P D A + + G+ G + W LL MY RWA++ G++
Sbjct: 63 LKSLTKQFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAERRGFK 122
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
+D G+KS T+ + A+GYL E G H L+ F + H + ++C D
Sbjct: 123 VETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC-D 181
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+P F E D++I ED+ + + G+ + A I H+PTG+ V
Sbjct: 182 VMPEFNE-EIDIEIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTGVIV 232
>gi|254776429|ref|ZP_05217945.1| peptide chain release factor 2 [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 370
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 21/238 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------AQLAEMEAIDYGLF 58
LWDD ++ V +L+ + + +++LR + ++ ++ + A +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEEGEGAAEALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 272
>gi|118467007|ref|YP_883159.1| peptide chain release factor 2 [Mycobacterium avium 104]
gi|166225107|sp|A0QJS1.1|RF2_MYCA1 RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|118168294|gb|ABK69191.1| peptide chain release factor 2 [Mycobacterium avium 104]
Length = 370
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 21/238 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI-------AQLAEMEAIDYGLF 58
LWDD ++ V +L+ + + +++LR + ++ ++ + A +
Sbjct: 43 QLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEEGEGAAEALAEADAE 102
Query: 59 KRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
+A RA ++ + E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA
Sbjct: 103 LKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWA 156
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
++ Y V D + G+KSAT +A+G LS E G H L+ F N S +
Sbjct: 157 EQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQT 215
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 216 SFAEVEVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 272
>gi|333445914|ref|ZP_08480856.1| peptide chain release factor 2 [Leuconostoc inhae KCTC 3774]
Length = 380
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 8/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +++ + ++ +L +AEE L+ ++ + D + + +
Sbjct: 45 FWDDNVKAQKIIEENNVLKNRRDSFLNLTSQAEEIDLLIEMLSEDVTDSEMMSELEESIV 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K ++ Y + +LL P D A + + GS G W L MY RWA + G++
Sbjct: 105 KALKDIETYNLEQLLTEPYDANNAILEVHPGSGGTESTDWGANLYRMYTRWAQQHGFQVD 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D G+ SATI+ AFG+L E G H + F + H + VDV+
Sbjct: 165 VLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVRISPFDSAGRRH-TSFVSVDVM 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P L+ + D++I D+D+ +F S G+ + + H PTGI V T
Sbjct: 224 PE-LDDTIDIEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSST 275
>gi|195952400|ref|YP_002120690.1| peptide chain release factor 2 [Hydrogenobaculum sp. Y04AAS1]
gi|195932012|gb|ACG56712.1| peptide chain release factor 2 [Hydrogenobaculum sp. Y04AAS1]
Length = 375
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 14/238 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL 57
M+ + W D K+ + K L D L +LK +E ++++L E + L
Sbjct: 37 MMSEPDFWSDQEKAKSISQKRKALQDKLNTYTSLKSRIKDLDE--MVSELKEEDLDTTLL 94
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
A V K L ++E+ L D+ A +TI+AG+ G WA LL MY RW
Sbjct: 95 ISEELEA---VEKDLKKFELETYLSDEMDINNAYLTIQAGAGGTEACDWASMLLRMYTRW 151
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+K GY ++ D G+KSAT+ + YA+GYL E G H L+ + +
Sbjct: 152 AEKHGYEVQLTDINPDDVAGIKSATLYIKGPYAYGYLKSENGVHRLVRISPFDANARRHT 211
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V VVP E +++I +EDL + + G+ + A I HIPTGI V
Sbjct: 212 SFASVLVVPEVNE-DVNIEIKEEDLRIDTYRASGAGGQYVNKTDTAVRITHIPTGIVV 268
>gi|383938432|ref|ZP_09991643.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae
SK674]
gi|383714641|gb|EID70636.1| peptide chain release factor 2 [Streptococcus pseudopneumoniae
SK674]
Length = 329
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 9 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELVEQL- 65
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 66 -AELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 122
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 123 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 181
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI V+ T
Sbjct: 182 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQST 237
>gi|160931692|ref|ZP_02079086.1| hypothetical protein CLOLEP_00523 [Clostridium leptum DSM 753]
gi|156869337|gb|EDO62709.1| peptide chain release factor 2 [Clostridium leptum DSM 753]
Length = 374
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 114/230 (49%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD KS +++ + + V+A + L E+A + ++ + E D + A +
Sbjct: 45 DFWDDMEKSQKIIQRTSMLKNKVSAYETLVSGYEDALTLIEMGDEEE-DLSILPDAQQEV 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K L++ ++ LL G D A +T AG+ G + WAE L MY RW ++ ++
Sbjct: 104 EKVRKELEEQRLATLLTGEYDANNAILTFHAGAGGTEAQDWAEMLYRMYCRWGERHNFKV 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ +D + G+KSA + E A+GYL E G H L+ + S + A ++V+
Sbjct: 164 KTLDYLDGEEAGLKSAVVLIEGLNAYGYLKSEAGVHRLVRVSPFDASGRRHTSFASLEVM 223
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P E +++I+ ED+ ++ + G++ + A + HIPTGI V
Sbjct: 224 PEINE-DVEVEIAPEDIKMDVYRASGAGGQKVNKTSSAVRLTHIPTGIVV 272
>gi|323486370|ref|ZP_08091695.1| hypothetical protein HMPREF9474_03446 [Clostridium symbiosum
WAL-14163]
gi|323695006|ref|ZP_08109153.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673]
gi|355624996|ref|ZP_09047980.1| peptide chain release factor 2 [Clostridium sp. 7_3_54FAA]
gi|323400352|gb|EGA92725.1| hypothetical protein HMPREF9474_03446 [Clostridium symbiosum
WAL-14163]
gi|323500950|gb|EGB16865.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673]
gi|354821641|gb|EHF06026.1| peptide chain release factor 2 [Clostridium sp. 7_3_54FAA]
Length = 335
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 7/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDDP +S + + + + V + L + E+ +++ ++ E D +
Sbjct: 6 FWDDPERSTKTVREAKNLKDTVETYRHLEQQYEDIQIMIEMG-YEENDPSMIPEIQEMLD 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ L+ LL G D A + + AG+ G W L MY RWADK+GY
Sbjct: 65 EFINSLEDIRTKTLLSGEYDNCNAILKLNAGAGGTEAMDWCSMLYRMYQRWADKKGYTTE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
V+D G+KS T++ E AFGYL E G H L+ N + + + DV+P
Sbjct: 125 VLDFLDGDEAGIKSITVQINGENAFGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVMP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+E D++++ +DL + S G+ + A I HIPTGI V+
Sbjct: 185 -DIEEDLDIEVNQDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGIVVQ 233
>gi|126695538|ref|YP_001090424.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT
9301]
gi|126542581|gb|ABO16823.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT
9301]
Length = 354
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 72 LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKC 131
LD++E +LL G D EGA V+I AG+ G + W E LL MY RWAD + +
Sbjct: 91 LDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEILLRMYSRWADNNQMSLIINELS 150
Query: 132 CCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVPLFLET 189
+ G+KS T E + +YA+GYL E G H L+ N + + + A V+V+P L+
Sbjct: 151 QGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPFNANGKRQTSFAGVEVMPK-LDD 209
Query: 190 SPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
+ L I ++DL + S G+ + + A I H+P+GI+VR T
Sbjct: 210 NISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGISVRCT 256
>gi|418102471|ref|ZP_12739547.1| peptide chain release factor 2 [Streptococcus pneumoniae NP070]
gi|419475148|ref|ZP_14014989.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14688]
gi|419486258|ref|ZP_14026025.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44128]
gi|353776637|gb|EHD57112.1| peptide chain release factor 2 [Streptococcus pneumoniae NP070]
gi|379561486|gb|EHZ26503.1| peptide chain release factor 2 [Streptococcus pneumoniae GA14688]
gi|379589167|gb|EHZ54007.1| peptide chain release factor 2 [Streptococcus pneumoniae GA44128]
Length = 325
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L ++
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELVEQL- 61
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 62 -AELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI V+ T
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQST 233
>gi|308535208|ref|YP_002137819.2| peptide chain release factor 2 [Geobacter bemidjiensis Bem]
gi|308052553|gb|ACH38023.2| peptide chain release factor 2 [Geobacter bemidjiensis Bem]
Length = 371
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 8/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFK-RAYRA 64
+ W+D + +VL K V + L +A + K + +L E + L + A A
Sbjct: 43 DFWNDAENAQKVLRSRTAMEKDVTTWESLDKQARDIKELIELGSEEQDEATLAEVAAMNA 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
L+ + Q E ++L GP+D GA V+I +G+ G + WAE LL MY+R+ +K+G++
Sbjct: 103 QLETG--VSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDWAEMLLRMYLRYCEKKGWK 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D GVK T E+A+GYL E G H L+ + S + A V
Sbjct: 161 TEITDYQEGDGAGVKGVTFAVTGEFAYGYLKAEAGIHRLVRISPFDSSARRHTSFASAFV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ E +++I++ DL + S G+ + A I HIPTG V
Sbjct: 221 FPVIEEEDIEIKIAESDLRIDTYRSSGAGGQHVNTTDSAIRITHIPTGTVV 271
>gi|262203335|ref|YP_003274543.1| peptide chain release factor 2 [Gordonia bronchialis DSM 43247]
gi|262086682|gb|ACY22650.1| peptide chain release factor 2 [Gordonia bronchialis DSM 43247]
Length = 371
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 10/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID--YGLFKRAYR 63
+LW+D + +V +L+ + + +LR + ++ ++ +LAE E D A
Sbjct: 43 DLWNDQEHAQKVTSELSHAQSEFRKVSELRQRLDDLPVLYELAEAEEGDDRVSALADADA 102
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ ++ E+ +L G D A V I++G+ G+ WA L+ MY+RWA++ GY
Sbjct: 103 DRAALRADIEAMEVKTMLAGEYDQRDALVNIRSGAGGVDAADWALMLMRMYIRWAEQHGY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT + Y +G LS E G H L+ F N S + + A V
Sbjct: 163 GVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLVRISPFDNQS-RRQTSFAEV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ ++T+ + I + D+ ++ S G+ + A + H+PTGI V
Sbjct: 222 EVLPV-VQTTDHIDIDENDVKVDVYRSSGPGGQSVNTTDSAVRLTHLPTGIVV 273
>gi|237807749|ref|YP_002892189.1| peptide chain release factor 2 [Tolumonas auensis DSM 9187]
gi|259585231|sp|C4LCN9.1|RF2_TOLAT RecName: Full=Peptide chain release factor 2; Short=RF-2
gi|237500010|gb|ACQ92603.1| hypothetical protein Tola_0975 [Tolumonas auensis DSM 9187]
Length = 365
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKD-LRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W++P ++ + L K +L+ V A D L AE+ +++ LA +E D F A +
Sbjct: 46 VWNEPERA-QALGKERSALESVVATIDVLTQGAEDVEMLVSLA-VEGEDEETFHEAETEA 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E ++ G +D + I++GS G + WA+ +L MY+RW + GY+
Sbjct: 104 DALEKKLVDLEFRRMFSGQHDASDCYMDIQSGSGGTEAQDWADMVLRMYLRWGEAHGYKP 163
Query: 126 RVVDKCCCKNG---GVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
+++ C +G G+KSATI+F EYAFG+L ETG H L+ F +G H T C
Sbjct: 164 ELIE---CSDGDVAGIKSATIKFTGEYAFGWLRTETGVHRLVRKSPFDSGGRRH--TSFC 218
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V ++ +++I+ DL ++ + G+ + + A I HIPT +
Sbjct: 219 SAFVYPEIDEDVEIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTNTVTQ 273
>gi|291528563|emb|CBK94149.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium
rectale M104/1]
Length = 330
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP KS + +L V L+ + E+ + + ++ E D L +
Sbjct: 5 DFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEMG-YEENDESLIPEIQQML 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D D M LL G D A + + AG+ G WA L MY +WADK+G+
Sbjct: 64 DDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWASMLFRMYSKWADKKGFTL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D G+KS T + E A+GYL E G H L+ N + + + DV+
Sbjct: 124 EVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFVSCDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P +E D+++ D+D+ + S G+ + A I H P+GI V+
Sbjct: 184 P-DIEEDLDIEVKDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQ 233
>gi|452943243|ref|YP_007499408.1| peptide chain release factor 2 [Hydrogenobaculum sp. HO]
gi|452881661|gb|AGG14365.1| peptide chain release factor 2 [Hydrogenobaculum sp. HO]
Length = 375
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 14/238 (5%)
Query: 1 MVRNYNLWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGL 57
M+ + W D K+ + K L D L +LK +E ++++L E + L
Sbjct: 37 MMSEPDFWSDQEKAKSISQKRKALQDKLNTYTSLKSRIKDLDE--MVSELKEEDLDTTLL 94
Query: 58 FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRW 117
A V K L ++E+ L D+ A +TI+AG+ G WA LL MY RW
Sbjct: 95 ISEELEA---VEKDLKKFELETYLSDEMDINNAYLTIQAGAGGTEACDWASMLLRMYTRW 151
Query: 118 ADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEA 175
A+K GY ++ D G+KSAT+ + YA+GYL E G H L+ + +
Sbjct: 152 AEKHGYEVQLTDINPDDVAGIKSATLYIKGPYAYGYLKSENGVHRLVRISPFDANARRHT 211
Query: 176 TLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ A V VVP E +++I +EDL + + G+ + A I HIPTGI V
Sbjct: 212 SFASVLVVPEVNE-DVNIEIKEEDLRIDTYRASGAGGQYVNKTDTAVRITHIPTGIVV 268
>gi|383787632|ref|YP_005472201.1| peptide chain release factor 2 [Fervidobacterium pennivorans DSM
9078]
gi|383110479|gb|AFG36082.1| peptide chain release factor 2 [Fervidobacterium pennivorans DSM
9078]
Length = 369
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D ++ +V ++ + K++ ++ ++ E+ ++ +L+E D + +
Sbjct: 44 DFWNDQKRAQQVNREIQRTRKIIEDMERIKVLFEDIEVGIELSEE---DPSMQEHLEEMI 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V+K + ++E+ +L G D A ++I G+ G + WA LL MY+RWA+++GY
Sbjct: 101 EEVAKKIREFELEMILNGKFDASNAYLSIHPGAGGTESQDWASMLLRMYMRWAERKGYDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+VD + G+KSATI + ++A+GYL E G H L+ + + + A V+V+
Sbjct: 161 EIVDYQEGEEAGIKSATIYIKGDFAYGYLKYERGVHRLVRISPFDANKRRHTSFASVNVL 220
Query: 184 PLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P + DL+I + + G+ + + A I H+PTGI V
Sbjct: 221 PEIEDDIDIEIKPEDLRID----TYRASGAGGQYVNKTESAVRITHLPTGIVV 269
>gi|293610588|ref|ZP_06692888.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826932|gb|EFF85297.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 337
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+W+D +++ + + + V+N L L + E+AK + LA +EA D L +
Sbjct: 18 IWNDQSRAQAMAKEKGELENVINVLDGLSTQLEDAKAMLDLA-VEADDESLLEDVQSELG 76
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
L + E ++ P D V I++GS G + WA LL MY+RW ++ G++
Sbjct: 77 AAEDELAKLEFRRMFSNPMDPNPCYVEIQSGSGGTEAQDWASMLLRMYMRWIERHGFKAE 136
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+++ G+KSATI E EYA+G+L E+G H L+ F +G+ H + + V +
Sbjct: 137 LMEVSDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRH-TSFSAVFIS 195
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ + ++ I+ D+ + + G+ + A + HIPTGI V
Sbjct: 196 P-EVDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVV 244
>gi|114776305|ref|ZP_01451350.1| peptide chain release factor 2 [Mariprofundus ferrooxydans PV-1]
gi|114553135|gb|EAU55533.1| peptide chain release factor 2 [Mariprofundus ferrooxydans PV-1]
Length = 372
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 31/247 (12%)
Query: 2 VRNYNLWDDPTKSNEVL---VKLADSLKVV--------NALKDLRYKAEEAKLIAQLAEM 50
+ + LWD P ++ +++ ++ +L+ +AL AEE+ Q+ +
Sbjct: 42 IEDPTLWDRPEEAQKLMQEKTRIERTLQTFHNSTEALDDALTLFEMGAEESDPDTQMEAV 101
Query: 51 EAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQL 110
E +D V L+ E++++L G D E A + I AGS G + WAE L
Sbjct: 102 ETLD------------SVQAELEALELARMLGGETDAESAFLDINAGSGGTEAQDWAEML 149
Query: 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FP 167
L MY+RWA+++G++ +++ + G+KSAT+ + EYA+G+L E G H L+ +
Sbjct: 150 LRMYLRWAERKGFKTELMECTAGEEAGIKSATVSIKGEYAYGFLKAEVGVHRLVRKSPYD 209
Query: 168 NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHI 224
+G+ H + A V P +E ++ I D+ + + G+ + A + H+
Sbjct: 210 SGNRRH-TSFASVFAYP-DIEKDIEIDIDPSDVRTDTYRASGAGGQHINKTDSAVRLTHV 267
Query: 225 PTGIAVR 231
PT I V+
Sbjct: 268 PTNIVVQ 274
>gi|283788451|ref|YP_003368316.1| peptide chain release factor 2 [Citrobacter rodentium ICC168]
gi|282951905|emb|CBG91623.1| peptide chain release factor 2 (RF-2) [Citrobacter rodentium
ICC168]
Length = 365
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ +V+ L + E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAIVDTLDQMAQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD+ + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDMLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAEARGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ EYA+G+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|441190704|ref|ZP_20970707.1| peptide chain release factor 2 [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440613705|gb|ELQ77097.1| peptide chain release factor 2 [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 370
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + ++LR + ++ +++ +LAE E + A
Sbjct: 44 SLWDDPESAQKITSRLSYLQGQLRRAEELRGRVDDLEVLFELAEAEGDEE-ARAEAEGEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
DV K +D+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 ADVRKAVDELEVRTLLSGEYDSREAVVNIRAEAGGVDAADFAEKLQRMYLRWAERHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 ELYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>gi|397670209|ref|YP_006511744.1| peptide chain release factor 2 [Propionibacterium propionicum
F0230a]
gi|395141892|gb|AFN45999.1| peptide chain release factor 2 [Propionibacterium propionicum
F0230a]
Length = 371
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW+D + V L+ V L LR + ++A ++ +LA +E D
Sbjct: 44 DLWNDQENAQRVTSTLSARQAEVERLDGLRGRLDDAAVMLELA-VEENDAEARTEVENEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ ++ E+ LL G D A +TI+A + G+ +AE+L+ MY+RWA++ GY
Sbjct: 103 NRLAREIEALEVRTLLSGEYDSREALITIRAEAGGVDAADFAEKLMRMYLRWAERHGYAV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYDTSYAEEAGLKSATFAVKAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + D+ +F S G+ + A I H+PTG+ V
Sbjct: 223 PVTEETDH-IDIPESDIRVDVFRSSGPGGQSVNTTDSAVRITHLPTGVVV 271
>gi|343519799|ref|ZP_08756775.1| peptide chain release factor 2 [Haemophilus pittmaniae HK 85]
gi|343392355|gb|EGV04924.1| peptide chain release factor 2 [Haemophilus pittmaniae HK 85]
Length = 365
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P K+ + + +VVN +K L ++ + + +LA +EA D F A
Sbjct: 45 DVWNEPEKAQALGKERVSLEQVVNTIKSLEQGLDDVEGLVELA-VEAEDEDTFNEAVAEL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 104 DELEQQLGKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A V
Sbjct: 164 ELMEVSDGDVAGLKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 222
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 223 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 273
>gi|315634626|ref|ZP_07889910.1| peptide chain release factor RF2 [Aggregatibacter segnis ATCC
33393]
gi|315476574|gb|EFU67322.1| peptide chain release factor RF2 [Aggregatibacter segnis ATCC
33393]
Length = 325
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W+D K+ + + +VVN +K+L E+ + +LA +EA D F A
Sbjct: 5 DVWNDADKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA-VEAGDEDTFNEAVAEL 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 64 DELEQQLAKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ GVKSATI EYAFG+L ETG H L+ F + + H + + V
Sbjct: 124 ELMEVSDGDVAGVKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFSAAFV 182
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 183 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 233
>gi|169826759|ref|YP_001696917.1| peptide chain release factor 2 [Lysinibacillus sphaericus C3-41]
gi|168991247|gb|ACA38787.1| Peptide chain release factor 2 (RF-2) [Lysinibacillus sphaericus
C3-41]
Length = 328
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
WDD + +V++ + LK +VN K+L E + +L E + + +
Sbjct: 7 FWDD-QQGAQVIINEGNGLKAIVNEYKELEETHENLDMTLELLREEPDEELQEELG-KEL 64
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + +E+ LL GP D A + + G+ G + W LL MY RWA+K G++
Sbjct: 65 VEFQQKMADFELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKV 124
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+D G+KS TI + AFGYL E G H L+ F + H + ++C DV
Sbjct: 125 ETMDYLPGDEAGIKSVTISIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRHTSFVSC-DV 183
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+P F E + ++ I EDL + + G+ + A I HIPTG V+
Sbjct: 184 MPEFDE-NIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTVVQ 234
>gi|320355124|ref|YP_004196463.1| peptide chain release factor 2 (bRF-2) [Desulfobulbus propionicus
DSM 2032]
gi|320123626|gb|ADW19172.1| bacterial peptide chain release factor 2 (bRF-2) [Desulfobulbus
propionicus DSM 2032]
Length = 369
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
N WD+ +++ V +L ++ + E+A+++ +A E D ++
Sbjct: 48 NFWDNQSEAKRVQRQLGQLQDLIGVWEKNFGDLEDAEMLLDMAREEN-DQDTYQEVVSGL 106
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ + ++ E+ + G +D A +TI AG+ G + W LL MY+RWA+ +G++
Sbjct: 107 DDLRRRVELVELECMFSGEHDANNAILTIHAGAGGTEAQDWVGILLRMYLRWAESKGFKA 166
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D G KS TI + +YA+GYL E G H L+ + S + A V V+
Sbjct: 167 DILDLLPGDEAGTKSVTIMVKGKYAYGYLRSEVGIHRLVRISPFDASGRRHTSFASVMVM 226
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ +++I+D+D+ + + G+ + A I H PTGI V+
Sbjct: 227 P-ELDDDVEIEINDKDIRIDTYRASGSGGQHVNKTDSAIRITHFPTGIVVQ 276
>gi|307708908|ref|ZP_07645368.1| peptide chain release factor 2 [Streptococcus mitis SK564]
gi|307620244|gb|EFN99360.1| peptide chain release factor 2 [Streptococcus mitis SK564]
Length = 325
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 17/237 (7%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ W+D K+++ L +L ++ + +++L+ + E L+ LAE E++ L A
Sbjct: 5 DFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVE--ILLDFLAEDESVQEELV--AQ 60
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
A LD K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 61 LAELD--KMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H +
Sbjct: 119 FKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFTS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+V+P L+ + +++I ++D+ F S G+ + + HIPTGI V+ T
Sbjct: 178 VEVMPE-LDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQST 233
>gi|199597236|ref|ZP_03210667.1| Protein chain release factor B [Lactobacillus rhamnosus HN001]
gi|229551742|ref|ZP_04440467.1| peptide chain release factor RF2 [Lactobacillus rhamnosus LMS2-1]
gi|258539140|ref|YP_003173639.1| peptide chain release factor B-like protein [Lactobacillus
rhamnosus Lc 705]
gi|418070186|ref|ZP_12707461.1| peptide chain release factor 2 [Lactobacillus rhamnosus R0011]
gi|421769338|ref|ZP_16206045.1| Peptide chain release factor 2 [Lactobacillus rhamnosus LRHMDP2]
gi|421772379|ref|ZP_16209035.1| Peptide chain release factor 2 [Lactobacillus rhamnosus LRHMDP3]
gi|423079069|ref|ZP_17067744.1| peptide chain release factor 2 [Lactobacillus rhamnosus ATCC 21052]
gi|199591752|gb|EDY99827.1| Protein chain release factor B [Lactobacillus rhamnosus HN001]
gi|229314873|gb|EEN80846.1| peptide chain release factor RF2 [Lactobacillus rhamnosus LMS2-1]
gi|257150816|emb|CAR89788.1| Peptide chain release factor 2 [Lactobacillus rhamnosus Lc 705]
gi|357539606|gb|EHJ23623.1| peptide chain release factor 2 [Lactobacillus rhamnosus R0011]
gi|357548203|gb|EHJ30074.1| peptide chain release factor 2 [Lactobacillus rhamnosus ATCC 21052]
gi|411183947|gb|EKS51082.1| Peptide chain release factor 2 [Lactobacillus rhamnosus LRHMDP3]
gi|411184469|gb|EKS51601.1| Peptide chain release factor 2 [Lactobacillus rhamnosus LRHMDP2]
Length = 332
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D+ + LDQYEM LL GP D A + I G+ G + W L+ MY RWAD+ G++
Sbjct: 65 DLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQNGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V D G+KS T+ E A+G L E G H L+ F + H + A VDV+
Sbjct: 125 VADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRH-TSFASVDVM 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P L+ S ++ I ED+ +F S G+ + A + H+PTGI
Sbjct: 184 PE-LDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVT 232
>gi|410944463|ref|ZP_11376204.1| peptide chain release factor 2 [Gluconobacter frateurii NBRC
101659]
Length = 322
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +LAEME D L + A ++ + + E+ LL G D V + AG+ G
Sbjct: 27 LVELAEMEN-DTDLVQEAITTLRGLAAEVQKREIESLLSGEADSNDCYVEVNAGAGGTEA 85
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WAE +L MY RWA++ GY+ ++ + G+KSATI+ A+G++ E G H L
Sbjct: 86 QDWAEMILRMYTRWAEQHGYKVTFIESSEGEQAGIKSATIQISGHNAYGWMKTEAGVHRL 145
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPA 218
+ + + + + A V V P+ ++ S +++I+D DL F + G+ + A
Sbjct: 146 VRISPFDAAARRQTSFASVWVYPV-VDDSIEVEINDSDLRVDTFRASGAGGQHVNKTDSA 204
Query: 219 ACIQHIPTGIAV 230
I HIPTGI V
Sbjct: 205 IRITHIPTGIVV 216
>gi|197123211|ref|YP_002135162.1| LigA protein [Anaeromyxobacter sp. K]
gi|196173060|gb|ACG74033.1| LigA [Anaeromyxobacter sp. K]
Length = 372
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
W D K+ +L + A +V A +R ++A+ +++LAE EA D A A+
Sbjct: 44 FWTDNVKAQALLKEKAQLEQVTQACAAVRRALDDAQALSELAE-EARDDATRAEAAEAAE 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
V + L+ E+ K+L GP+D GA V +K+G+ G+ WA L MYVR+ ++ G+
Sbjct: 103 AVGRQLEGLELQKMLSGPHDAAGAIVEVKSGAGGVEAMDWAAMLYRMYVRYCERRGWEVE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
D + G+ SA+ ++ +G+L E G H L+ + + + + A VDV P
Sbjct: 163 PADLVAGEEAGISSASFIVRGDHPYGWLKAEKGVHRLVRISPFDQNARRQTSFAAVDVTP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+E + I + D+ + S G++ + A + H+PTGI V
Sbjct: 223 -EIEDDIVIDIKEADVRIDTYRSSGAGGQKVNKTDSAVRMTHLPTGIVV 270
>gi|374709249|ref|ZP_09713683.1| peptide chain release factor 2 [Sporolactobacillus inulinus CASD]
Length = 324
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 9/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +V+ + + V++L DL+ K E+ ++ +L + E D L +
Sbjct: 4 FWDDNEKAQKVIDESNELKGKVDSLTDLQNKFEDLQVAYELVKEEN-DADLKAELEESLG 62
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ ++YE LL P+D A + + G+ G + WA LL MY RWA+++G+
Sbjct: 63 EARDAFNRYETRLLLSAPHDRNNAILELHPGAGGTEAQDWASMLLRMYTRWAERKGFAVE 122
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+D GVKS T+ + A+GYL E G H L+ F H + ++C +VV
Sbjct: 123 TLDYLPGDEAGVKSVTLLIKGTDAYGYLKAEKGIHRLVRISPFDAAGRRHTSFVSC-EVV 181
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P L+ ++++ EDL +F S G+ + A + H+PTGI V
Sbjct: 182 PE-LDDDIEIEVRPEDLRVDVFRSSGAGGQHINKTSSAVRMTHLPTGIVV 230
>gi|407472789|ref|YP_006787189.1| peptide chain release factor PrfB [Clostridium acidurici 9a]
gi|407049297|gb|AFS77342.1| peptide chain release factor PrfB [Clostridium acidurici 9a]
Length = 328
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D + ++L ++ V ++ EE + +L E D + K R
Sbjct: 4 DFWNDSENAQKILQEIKFKKDKVTEYDEIVNSIEEVEFTIELLN-ECEDDDICKELERKI 62
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K +D ++++ LL G D A ++I +G+ G+ + WAE LL MY RWAD Y
Sbjct: 63 SFLEKRVDNFKIATLLSGDYDSNNAILSIHSGAGGLEAQDWAEMLLRMYTRWADHREYTV 122
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+D GG+KS TI + A+GYL E G H L+ + S + A VD+
Sbjct: 123 ETLDILPDTEGGIKSVTILVKGINAYGYLKSEKGVHRLVRISPFDSSGRRHTSFASVDIF 182
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P L+ + ++ I+ DL + S G+ + A I HIPTG+ V+
Sbjct: 183 PE-LDENVEVDINPNDLRIDTYRSGGAGGQHVNTTDSAIRITHIPTGVVVQ 232
>gi|317049377|ref|YP_004117025.1| hypothetical protein Pat9b_3172 [Pantoea sp. At-9b]
gi|316950994|gb|ADU70469.1| hypothetical protein Pat9b_3172 [Pantoea sp. At-9b]
Length = 365
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKA-EEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+++ D Y+ E+ + + +LA +EA D F A
Sbjct: 45 DVWNEPERA-QALGKERSSLEIIVGTLDQMYQGLEDVQGLLELA-VEADDEETFNETI-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + L + E ++ G D + ++AGS G + WA L+ MY+RWA+ +G+
Sbjct: 102 ELDGLETKLGELEFRRMFSGEYDSADCYIDLQAGSGGTEAQDWASMLMRMYLRWAEAKGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KSATI EYAFG+L ETG H L+ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGLKSATIRVSGEYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+ P ++ D++I+ DL ++ + G+ + + A I HIPTG +
Sbjct: 221 FIYPE-VDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGTVTQ 273
>gi|168333703|ref|ZP_02691956.1| peptide chain release factor 2 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 349
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W + + VL + D ++++ K L E+ ++ + +E D + A +
Sbjct: 27 DFWQNSKYAQSVLQEXKDYKEIISKYKKLCNMYEDVLVLIDMG-IEEHDADMCAEAISDA 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ D S LL G D A +++ AG+ G W LL MY RWA+K G++
Sbjct: 86 NSFIEFYDNLRTSTLLDGEYDKNDAIISLHAGAGGTEACDWNNMLLRMYTRWAEKHGFKS 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++D + GVKSAT+E + A+GYL E G H L+ F +G H + A +DV
Sbjct: 146 KLLDILDGEEAGVKSATLEISGQNAYGYLKSEKGIHRLVRISPFDSGGRRH-TSFASLDV 204
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
+P +T+ ++ I+ EDL + S G+ + A I H P+GI V+
Sbjct: 205 MPKIDDTA-EITINPEDLQIDTYRSSGAGGQHVNTTDSAVRITHKPSGIVVQ 255
>gi|350421958|ref|XP_003493012.1| PREDICTED: peptide chain release factor 2-like [Bombus impatiens]
Length = 365
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W P K+ + + +V+ + L ++ + + +LA +EA D F
Sbjct: 45 DVWSQPDKAQALGKERVTLEEVIVTIDKLLQGLDDVEGLLELA-IEAEDQETFDEVNNEL 103
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+++ L Q E ++ GP+D + ++AGS G + WAE LL MY+RWA+ +G+
Sbjct: 104 VELESQLAQLEFRRMFAGPHDSADCYLDLQAGSGGTEAQDWAEMLLRMYLRWAESKGFTT 163
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSAT++ EYAFG+L ETG H L+ F +G+ H + + V
Sbjct: 164 EIIEVSDGDVAGIKSATVKISGEYAFGWLRTETGVHRLVRKSPFDSGNRRH-TSFSSAFV 222
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I HIPTGI +
Sbjct: 223 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHIPTGIVTQ 273
>gi|297181318|gb|ADI17509.1| protein chain release factor b [uncultured bacterium HF0130_06E03]
Length = 325
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+++K ++ +E +L G +D + A + I +G+ G WAE LL MY RW ++ G + +
Sbjct: 65 ELTKNVESFEFRSMLDGVDDSKNAILVIHSGAGGTEAADWAEMLLRMYNRWTERNGLKSK 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D + G+K TIE EYA+GYL E G H L+ F +G H + A V V
Sbjct: 125 VMDIQPGEEAGIKGVTIEVSGEYAYGYLKAEAGVHRLVRISPFDSGGRRH-TSFASVFVY 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P ++ ++ + DEDL ++ + G+ + A I H+PTGI V+
Sbjct: 184 PD-VDDDIEVDLKDEDLKIEVYRAGGAGGQHVNKTSSAVRITHVPTGIVVQ 233
>gi|291299376|ref|YP_003510654.1| peptide chain release factor 2 [Stackebrandtia nassauensis DSM
44728]
gi|290568596|gb|ADD41561.1| peptide chain release factor 2 [Stackebrandtia nassauensis DSM
44728]
Length = 376
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD T + +V +L+ +N ++DLR + ++A+++ LA+ E D + A +
Sbjct: 44 DLWDDTTHAQKVTSRLSYVQSELNRIEDLRRRLDDAEVLWDLAQSEE-DPAAVEEASKEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+SK +++ E+ LL G D A ++I++G+ G +AEQL+ MY+RWA++ GY
Sbjct: 103 AALSKAIEELEVRTLLSGEYDSREALISIRSGAGGADSADFAEQLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP 167
V D + G+KSAT + YA+G LS E G H ++
Sbjct: 163 EVYDVSYAEEAGIKSATFAVKAPYAYGTLSVEQGTHRVVRIS 204
>gi|120436153|ref|YP_861839.1| peptide chain release factor 2 [Gramella forsetii KT0803]
gi|117578303|emb|CAL66772.1| peptide chain release factor 2 [Gramella forsetii KT0803]
Length = 333
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDDP K+ +++ K VNA K E+A+ + + ++E I Y +K +
Sbjct: 9 DFWDDPKKAEQIM-------KEVNAEKSWVGDYEKAETLVE--DLEVI-YDFYKEDEATA 58
Query: 66 LDVSK-------LLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118
DV + L++ E +L D A + I AG+ G WAE L+ MY+ WA
Sbjct: 59 EDVQQRNDKAVELIEDLEFKNMLSEEGDSMSAVLQITAGAGGTESCDWAEMLMRMYLMWA 118
Query: 119 DKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEA 175
+K Y+ R ++ G+K+ T+E E EYAFG+L GE G H L+ F + + H
Sbjct: 119 EKRKYKIRELNYQAGDVAGIKTVTLEIEGEYAFGWLKGENGVHRLVRISPFDSNAKRH-T 177
Query: 176 TLACVDVVPLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRG 232
+ A + PL ++ S ++ I+ DL + S G+ + + A ++H PTGI +
Sbjct: 178 SFASAYIYPL-VDDSIEIDINPSDLSWETMRSSGAGGQNVNKVETAVRLRHEPTGIVIEN 236
Query: 233 T 233
+
Sbjct: 237 S 237
>gi|414341845|ref|YP_006983366.1| peptide chain release factor 2 [Gluconobacter oxydans H24]
gi|411027180|gb|AFW00435.1| peptide chain release factor 2 [Gluconobacter oxydans H24]
Length = 322
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +LAEME D L + A ++ + + E+ LL G D V + AG+ G
Sbjct: 27 LVELAEMEN-DTDLVQEAITTLRGLAAEVQKREIESLLSGEADSNDCYVEVNAGAGGTEA 85
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WAE +L MY RWA++ GY+ ++ + G+KSATI+ A+G++ E G H L
Sbjct: 86 QDWAEMILRMYTRWAEQHGYKVTFIESSEGEQAGIKSATIQISGHNAYGWMKTEAGVHRL 145
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPA 218
+ + + + + A V V P+ ++ S +++I+D DL F + G+ + A
Sbjct: 146 VRISPFDAAARRQTSFASVWVYPV-VDDSIEVEINDSDLRVDTFRASGAGGQHVNKTDSA 204
Query: 219 ACIQHIPTGIAV 230
I HIPTGI V
Sbjct: 205 IRITHIPTGIVV 216
>gi|453329998|dbj|GAC87976.1| translation peptide chain release factor 2 [Gluconobacter
thailandicus NBRC 3255]
Length = 322
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Query: 44 IAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103
+ +LAEME D L + A ++ + + E+ LL G D V + AG+ G
Sbjct: 27 LVELAEMEN-DTDLVQEALTTLRGLAAEVQKREIESLLSGEADSNDCYVEVNAGAGGTEA 85
Query: 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCL 163
+ WAE +L MY RWA++ GY+ ++ + G+KSATI+ A+G++ E G H L
Sbjct: 86 QDWAEMILRMYTRWAEQHGYKVTFIESSEGEQAGIKSATIQISGHNAYGWMKTEAGVHRL 145
Query: 164 INFP--NGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPA 218
+ + + + + A V V P+ ++ S +++I+D DL F + G+ + A
Sbjct: 146 VRISPFDAAARRQTSFASVWVYPV-VDDSIEVEINDSDLRVDTFRASGAGGQHVNKTDSA 204
Query: 219 ACIQHIPTGIAV 230
I HIPTGI V
Sbjct: 205 IRITHIPTGIVV 216
>gi|390457185|ref|ZP_10242713.1| peptide chain release factor 2 [Paenibacillus peoriae KCTC 3763]
Length = 331
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAID--YGLFKRAYR 63
+ WDD K+ +V+ ++ V++ + LR + E+A ++A+LA+ E + G + + R
Sbjct: 5 DFWDDNEKAQDVIAEMNAVKSSVDSYEQLRQEYEDAGMMAELADEEGDETLVGEIENSVR 64
Query: 64 ASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+ L SKL ++E+ LL P D A + + G+ G + W + LL MY RWA+K G+
Sbjct: 65 SLL--SKLQ-EFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRMYTRWAEKRGF 121
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ +D G+KS T+ + A+GYL E G H L+ F + H + ++C
Sbjct: 122 KVETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSC- 180
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DVVP + D++I EDL + + G+ + A I H+PTGI V
Sbjct: 181 DVVPEIAD-DVDIEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGIVV 232
>gi|403047238|ref|ZP_10902706.1| peptide chain release factor 2 [Staphylococcus sp. OJ82]
gi|402762772|gb|EJX16866.1| peptide chain release factor 2 [Staphylococcus sp. OJ82]
Length = 332
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 6/229 (2%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ E++ K +VNA + L + E+ + +L + + + L
Sbjct: 6 FWDDQDKAQEIIDKNNALKTIVNAYRGLESEIEDMETTRELLLDDDD-DDMKSDLEQNVL 64
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
D LD++E+ LL GP D A + + G+ G + W LL MY R+ +++G++
Sbjct: 65 DFKANLDKFELQLLLDGPYDANDAIMELHPGAGGTESQDWTNMLLRMYQRYCEQKGFKVE 124
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+ D GVKS T+ + A+GYL E G H L+ + S + A DV+P
Sbjct: 125 IADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIP 184
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
F T ++ I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 185 QFNNTEIEIDINPDDINVDTFRASGAGGQHINKTESAIRITHQPTGIVV 233
>gi|334563502|ref|ZP_08516493.1| peptide chain release factor 2 [Corynebacterium bovis DSM 20582]
Length = 373
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 12/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR----A 61
LWDDP + V +L+ + + + LR + ++ ++ +AE + A
Sbjct: 43 TLWDDPDHAQTVTSRLSHTQATLRKVTGLRQRLDDLPVMYDMAEEADAEEAQEATELADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
RA L ++ E++ +L G D A VTI++ + G+ WAE L+ MY RWA+K
Sbjct: 103 ERAELRAE--IESLEVTTMLSGEYDSREAVVTIRSAAGGVDAADWAEMLMRMYTRWAEKH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
G++ V D + G+KS T EY +G LS E G H L+ + + + A
Sbjct: 161 GHKVEVYDISYAEEAGIKSGTFVVHGEYMYGELSVEQGTHRLVRISPFDNQGRRQTSFAE 220
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +E + + I + ++ ++ S G+ + A + H+PTGI V
Sbjct: 221 VEVLPV-VEQTDHIDIDENEVRVDVYRSSGPGGQSVNTTDSAVRLTHVPTGIVV 273
>gi|303252568|ref|ZP_07338731.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247319|ref|ZP_07529367.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302648536|gb|EFL78729.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306856163|gb|EFM88318.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 347
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+W+ P K+ + L K +L+ VVN ++ L E+ + + +LA +EA D F A +
Sbjct: 28 IWNTPEKA-QALGKERSALEMVVNTIRTLDQGVEDVEGLIELA-VEAEDEDTFNEAQAEA 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 86 NELEEKLAKLEFQRMFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSAT++ EYAFG+L ETG H L+ F + + H + A V
Sbjct: 146 ELIEVSDGDVAGLKSATVKITGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 204
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I HIP+ I V+
Sbjct: 205 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHIPSDIVVQ 255
>gi|147569|gb|AAA24520.1| peptide chain release factor 2 [Escherichia coli]
Length = 365
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ VV+ L ++ E+ + +LA +EA D F A A
Sbjct: 45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAV-A 101
Query: 65 SLD-VSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
LD + + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G+
Sbjct: 102 ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGF 161
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
+ ++++ + G+KS TI+ +YA+G+L ETG H ++ F +G H + +
Sbjct: 162 KTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRVVRKSPFDSGGRRH-TSFSSA 220
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P ++ D++I+ DL ++ + G+ + + A I HIPTGI +
Sbjct: 221 FVYPE-VDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQ 273
>gi|359410417|ref|ZP_09202882.1| peptide chain release factor 2 [Clostridium sp. DL-VIII]
gi|357169301|gb|EHI97475.1| peptide chain release factor 2 [Clostridium sp. DL-VIII]
Length = 364
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD ++ EV K + L+ E+ +++ ++ ME D +
Sbjct: 47 FWDDSKRAEEVTKKSKLIKDKIENFDKLKSDIEDIEVLKEI--MEEDDEESASEIIQTIK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ +D Y M LL G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 GIEDKIDDYNMKVLLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEKQGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D G+KS T++ EYA+GYL E G H L+ N + + + A ++V+P
Sbjct: 165 TLDLLPGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPYNANGKRQTSFASMEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L D+ I +DL + S G+ + A I H+PTGI V+
Sbjct: 225 -ELTKEQDINIKPDDLRIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVQ 273
>gi|315658891|ref|ZP_07911758.1| peptide chain release factor RF2 [Staphylococcus lugdunensis
M23590]
gi|315496015|gb|EFU84343.1| peptide chain release factor RF2 [Staphylococcus lugdunensis
M23590]
Length = 334
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 18/241 (7%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVN-ALKDLRYKAEEAKLIAQLAEMEAIDYGLFK 59
M+ N WDD K+ +++ K ++LK + DL + E+ +L + E +
Sbjct: 1 MMTEPNFWDDQNKAQDIIDK-NNALKAITMGYHDLDNEVEDMFATTELLQEE------YD 53
Query: 60 RAYRASLDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMY 114
+A L+++ L LDQ+E+ LL GP+D A + + G+ G + WA LL MY
Sbjct: 54 EDMKAELEMNVLAFNDKLDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMY 113
Query: 115 VRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFP 172
R+ ++ G++ VD G+KS T+ + A+GYL E G H L+ + S
Sbjct: 114 QRYCEQNGFKVETVDYLPGDEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGR 173
Query: 173 HEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIA 229
+ A DV+P F +++I+ +D+ F + G+ + + A I H PTGI
Sbjct: 174 RHTSFASCDVIPDFNNNEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIV 233
Query: 230 V 230
V
Sbjct: 234 V 234
>gi|345430053|ref|YP_004823173.1| peptide chain release factor RF-2 [Haemophilus parainfluenzae T3T1]
gi|301156116|emb|CBW15587.1| peptide chain release factor RF-2 [Haemophilus parainfluenzae T3T1]
Length = 347
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 15/235 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P K+ + + +VV+ +K+L E+ + + +LA +EA D F A
Sbjct: 27 DVWNEPEKAQALGKERVSLEQVVDTIKNLEQGLEDVEGLLELA-VEAEDEETFNEAVAEL 85
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + L + E ++ G +D V ++AGS G + W E LL MY+RWA+ +G++
Sbjct: 86 DELEQQLAKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKT 145
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
+++ G+KSATI EYAFG+L ETG H L+ F + + H + A V
Sbjct: 146 ELMEVSDGDVAGLKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRH-TSFAAAFV 204
Query: 183 VPLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P + DL+I ++ + G+ + + A I H+P+GI V+
Sbjct: 205 YPEIDDDIDIEINPADLRID----VYRASGAGGQHVNKTESAVRITHMPSGIVVQ 255
>gi|222624780|gb|EEE58912.1| hypothetical protein OsJ_10554 [Oryza sativa Japonica Group]
Length = 356
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
Query: 70 KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVD 129
+L++ +M +L R +D E T++AG+ G WA ++NMY WA + GY +++
Sbjct: 95 ELMEHIDMLRLAREEDDNELE--TVQAGAGGTESMDWAAMVMNMYSSWAQRRGYTVSIIE 152
Query: 130 KCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLF 186
+ + G+K ATI+ + EYAFGY E G H L+ F +G H + A V VVP+
Sbjct: 153 EMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRH-TSFAAVAVVPIL 211
Query: 187 LETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
+ S QI D DL F S G+ + + A I HIPTGI
Sbjct: 212 GDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGI 256
>gi|449967856|ref|ZP_21812771.1| peptide chain release factor 2 [Streptococcus mutans 15VF2]
gi|449168149|gb|EMB70984.1| peptide chain release factor 2 [Streptococcus mutans 15VF2]
Length = 325
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ WDD K+++ L +L + N++++L ++E +L L EM D L
Sbjct: 5 DFWDDNIAAQKTSQELNELKLKYETFNSMQEL---SDETEL---LQEMLEEDDSLQGELE 58
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ + K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 59 EDLVKLDKIMTSYEMTLLLSEPYDANNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS + FE + A+G L E G H L+ F + H + A
Sbjct: 119 FKVDVLDYQAGDEAGIKSVALSFEGQNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFAS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+V+P L+ + ++ I DED+ F S G+ + + HIP+GI V T
Sbjct: 178 VEVMPE-LDNTIEVDIRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPSGIVVAST 233
>gi|225175296|ref|ZP_03729291.1| peptide chain release factor 2 [Dethiobacter alkaliphilus AHT 1]
gi|225169048|gb|EEG77847.1| peptide chain release factor 2 [Dethiobacter alkaliphilus AHT 1]
Length = 288
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 8/191 (4%)
Query: 47 LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIW 106
LAE E D L+ A + + +++ +D+ E++ L RG D A + I G+ G + W
Sbjct: 3 LAEDEG-DKELWVDAEQVAAELAAEMDKLELAVLFRGRYDANNAIIAIHPGAGGTESQDW 61
Query: 107 AEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN- 165
A LL MY RWA++ Y+ V+D G+KSAT+ + A+G+L E G H L+
Sbjct: 62 ANMLLRMYTRWAERRNYQVEVLDLLPGDEAGIKSATLLIKGRNAYGFLKAERGVHRLVRI 121
Query: 166 --FPNGSFPHEATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAAC 220
F S H + A +DV+P E ++IS +DL + + G+ + A
Sbjct: 122 SPFDAASRRH-TSFASLDVLPEVEEGDSGIEISPDDLKIDTYRASGAGGQHVNTTDSAVR 180
Query: 221 IQHIPTGIAVR 231
I HIPTG V+
Sbjct: 181 ITHIPTGTVVQ 191
>gi|449889457|ref|ZP_21787557.1| peptide chain release factor 2 [Streptococcus mutans SA41]
gi|449250072|gb|EMC48154.1| peptide chain release factor 2 [Streptococcus mutans SA41]
Length = 325
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 6 NLWDD---PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY 62
+ WDD K+++ L +L + N++++L ++E +L L EM D L
Sbjct: 5 DFWDDNIAAQKTSQELNELKLKYETFNSMQEL---SDETEL---LQEMLEEDDSLQGELE 58
Query: 63 RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+ + K++ YEM+ LL P D A + I GS G + W + LL MY R+ + +G
Sbjct: 59 EDLVKLDKIMTSYEMTLLLSEPYDANNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNAKG 118
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
++ V+D G+KS T+ FE A+G L E G H L+ F + H + A
Sbjct: 119 FKVDVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRH-TSFAS 177
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
V+V+P L+ + ++ I DED+ F S G+ + + HIP+GI V T
Sbjct: 178 VEVMPE-LDDTIEVDIRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPSGIVVAST 233
>gi|27467454|ref|NP_764091.1| peptide chain release factor 2 [Staphylococcus epidermidis ATCC
12228]
gi|251810188|ref|ZP_04824661.1| peptide chain release factor 2 [Staphylococcus epidermidis
BCM-HMP0060]
gi|293368216|ref|ZP_06614845.1| peptide chain release factor RF2 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|420222336|ref|ZP_14727257.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH08001]
gi|420225262|ref|ZP_14730096.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH06004]
gi|420226664|ref|ZP_14731443.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05003]
gi|420228984|ref|ZP_14733695.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04003]
gi|420231341|ref|ZP_14735993.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051668]
gi|420233980|ref|ZP_14738554.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051475]
gi|421607645|ref|ZP_16048883.1| peptide chain release factor 2 [Staphylococcus epidermidis AU12-03]
gi|27314997|gb|AAO04133.1|AE016745_232 peptide chain release factor RF-2 [Staphylococcus epidermidis ATCC
12228]
gi|251806240|gb|EES58897.1| peptide chain release factor 2 [Staphylococcus epidermidis
BCM-HMP0060]
gi|291317639|gb|EFE58056.1| peptide chain release factor RF2 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|394289388|gb|EJE33272.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH08001]
gi|394293817|gb|EJE37519.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH06004]
gi|394298280|gb|EJE41857.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH05003]
gi|394299667|gb|EJE43202.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH04003]
gi|394302907|gb|EJE46341.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051668]
gi|394304673|gb|EJE48069.1| peptide chain release factor 2 [Staphylococcus epidermidis
NIH051475]
gi|406656696|gb|EKC83097.1| peptide chain release factor 2 [Staphylococcus epidermidis AU12-03]
Length = 332
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 6/230 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W+D TK+ +++ K +VN L ++ +L + E D +
Sbjct: 5 DFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIELEEEV 63
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ +DQYE+ LL GP+D A + + G+ G + W LL MY R+ ++ G++
Sbjct: 64 QQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQNGFKV 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VD GVKS T+ + A+GYL E G H L+ + S + A DV+
Sbjct: 124 ETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVI 183
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 184 PDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 233
>gi|237755833|ref|ZP_04584431.1| peptide chain release factor 2 [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691998|gb|EEP61008.1| peptide chain release factor 2 [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 369
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 27/240 (11%)
Query: 6 NLWDDPTKSNEVLV-------KLADSLKV---VNALKDLRYKAEEAKLIAQLAEMEAIDY 55
N W+D K+ E+ KL + L V +N L D L EME D
Sbjct: 44 NFWNDTKKAQEISSRRNYLGEKLEEILTVDEKINNLLDY----------ITLLEMEE-DQ 92
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
L+ + ++ K + + E+ LL D + A +T++AGS G+ W E LL MY
Sbjct: 93 ELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNAILTVQAGSGGVEACDWTEMLLRMYT 152
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWA+K GY+ +VD GVKSAT+ + YA+GYL GE G H L+ + +
Sbjct: 153 RWAEKRGYQVELVDFQPDDVAGVKSATVIIKGPYAYGYLKGEQGVHRLVRISPFDANKRR 212
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + V V+P ++ ++I++EDL + + G+ + A I HIPTGI V
Sbjct: 213 HTSFSAVSVIP-EIDEDIKVEINEEDLRIDTYRAGGAGGQHVNKTDSAVRITHIPTGIVV 271
>gi|53802400|ref|YP_112836.1| peptide chain release factor 2, programmed frameshift, partial
[Methylococcus capsulatus str. Bath]
gi|53756161|gb|AAU90452.1| peptide chain release factor 2, programmed frameshift
[Methylococcus capsulatus str. Bath]
Length = 365
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 15/234 (6%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
+WD+P ++ + + VVN L ++ ++A + QLA +E D +
Sbjct: 46 IWDNPERAQALGKERTQLEGVVNRLNEIAAGIDDAAELLQLA-VEEDDEDSVESVAADLA 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
++ + E ++ G D A + I+AGS G + WA+ L MY+RW +++G++
Sbjct: 105 HYESVVAEMEFRRMFSGEMDPNNAFLDIQAGSGGTEAQDWAQMLERMYLRWGERKGFKTE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
+V++ + G+KSATI FE EYA+G+L ETG H L+ F +G+ H + + V V
Sbjct: 165 LVEESPGEVAGIKSATIRFEGEYAYGWLRTETGVHRLVRKSPFDSGNRRH-TSFSSVFVS 223
Query: 184 P------LFLETSPDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
P DL+ ++ + G+ + + A I H+PTGI V+
Sbjct: 224 PEIDDNIDIDINPADLRTD----VYRASGAGGQHVNRTESAVRITHLPTGIVVQ 273
>gi|406600644|ref|YP_006745990.1| peptide chain release factor 2 [Leuconostoc gelidum JB7]
gi|406372179|gb|AFS41104.1| peptide chain release factor 2 [Leuconostoc gelidum JB7]
Length = 333
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 8/233 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ +++ + ++ +L +AEE L+ ++ + D + +
Sbjct: 6 FWDDNVKAQKIIEENNVLKNRRDSFLNLTNQAEEIDLLIEMLSEDVTDSEMMTELEESIA 65
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
K ++ Y + +LL P D A + + GS G W L MY RWA + G++
Sbjct: 66 KAQKDIETYNLEQLLTEPYDANNAILEVHPGSGGTESTDWGANLYRMYTRWAQQHGFQVD 125
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVV 183
V+D G+ SATI+ AFG+L E G H + F + H + VDV+
Sbjct: 126 VLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVRISPFDSAGRRH-TSFVSVDVM 184
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P L+ + D++I D+D+ +F S G+ + + H PTGI V T
Sbjct: 185 PE-LDDTIDVEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSST 236
>gi|254284237|ref|ZP_04959205.1| peptide chain release factor 2 [gamma proteobacterium NOR51-B]
gi|219680440|gb|EED36789.1| peptide chain release factor 2 [gamma proteobacterium NOR51-B]
Length = 280
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 8/165 (4%)
Query: 70 KLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVD 129
+ L+ E ++ G D A + I+AGS G + WAE LL MY+RW + G++ +V+
Sbjct: 23 QALEALEFRRMFSGEMDDANAFLDIQAGSGGTEAQDWAEMLLRMYLRWGESRGFKTTLVE 82
Query: 130 KCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDVVPLF 186
G+KSATI+FE EY FG++ ETG H L+ F +G+ H + A V V P
Sbjct: 83 VSAGDVAGIKSATIQFEGEYPFGWIRTETGVHRLVRKSPFDSGNRRH-TSFASVFVSPE- 140
Query: 187 LETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGI 228
++ + D++I+ DL + S G+ + A I H+PT +
Sbjct: 141 VDDNIDIEINPADLRVDTYRSSGAGGQHVNTTDSAVRITHVPTNV 185
>gi|260599230|ref|YP_003211801.1| peptide chain release factor 2 [Cronobacter turicensis z3032]
gi|260218407|emb|CBA33491.1| Peptide chain release factor 2 [Cronobacter turicensis z3032]
Length = 342
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 11/233 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
++W++P ++ + L K SL+ +V L + ++ + +LA +EA D F A
Sbjct: 22 DVWNEPERA-QALGKERSSLEAIVETLDQMSQGLDDVAGLLELA-VEADDEETFNEAVVE 79
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+ L Q E ++ G D + I+AGS G + WA LL MY+RWA+ G++
Sbjct: 80 LDQLEAKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFK 139
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVD 181
++++ + G+KSATI+ +YAFG+L ETG H L+ F +G H + +
Sbjct: 140 TEIIEESEGEVAGLKSATIKISGDYAFGWLRTETGVHRLVRKSPFDSGGRRH-TSFSSAF 198
Query: 182 VVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
V P +E D++I+ DL ++ + G+ + + A I HIPTG +
Sbjct: 199 VYPE-VEDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGTVTQ 250
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,722,946,175
Number of Sequences: 23463169
Number of extensions: 152610715
Number of successful extensions: 339599
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6680
Number of HSP's successfully gapped in prelim test: 684
Number of HSP's that attempted gapping in prelim test: 327052
Number of HSP's gapped (non-prelim): 7413
length of query: 238
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 100
effective length of database: 9,121,278,045
effective search space: 912127804500
effective search space used: 912127804500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)