BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026460
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74476|RF2_SYNY3 Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=prfB PE=3 SV=2
Length = 372
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 130/233 (55%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD ++ ++L L ++ + + + ++++ I +L E+E D L A
Sbjct: 46 DFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED-DQALLTEAETTL 104
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K LD++E+ +LL GP D +GA++TI AG+ G + WAE LL MY RW++K+GY+
Sbjct: 105 EQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKV 164
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KS T+E E YA+GYL E G H L+ N + + + A V+V+
Sbjct: 165 HLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTSFAGVEVM 224
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAK--PAACIQHIPTGIAVRGT 233
PL E + L I D+DL S+ G+ Q++ K A I H+PTG+AVR T
Sbjct: 225 PLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCT 277
>sp|B7K0A6|RF2_CYAP8 Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801)
GN=prfB PE=3 SV=1
Length = 365
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 6/233 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WD+ + + L +L D V + E+ K IA+L E+E D L + A
Sbjct: 44 DFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE-DATLNEEAEANL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ LD++E+ +LL G D +GA +TI AG+ G + WAE LL MY RW +++GY+
Sbjct: 103 TQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + G+KSAT+E E YA+GYL GE G H L+ N + + + A ++V+
Sbjct: 163 HLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFSSPSLPGE-RQSIAKPAACIQ--HIPTGIAVRGT 233
P E ++I ++DL ++ G+ Q++ K ++ H+PTGIAVR T
Sbjct: 223 PALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCT 275
>sp|B9L0E3|RF2_THERP Peptide chain release factor 2 OS=Thermomicrobium roseum (strain
ATCC 27502 / DSM 5159 / P-2) GN=prfB PE=3 SV=1
Length = 374
Score = 127 bits (318), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LW DP ++ +L +L+ +V + L +++A+ + +L + + D L + + +
Sbjct: 43 DLWQDPQRAQSLLRRLSQLRDLVQEWETL---SQQARDLLELRALASDDLELAGQVEQEA 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++++ + Q E+ LL G D A + + AG+ G+ + WAE LL MY+RWA + G+
Sbjct: 100 TELAERVRQLELRLLLTGQYDGHDAILAVHAGTGGVDAQDWAEMLLRMYLRWAQRAGFAA 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
VVD + G+KSAT+E YA+GYL GE G H L+ + + + A V+V+
Sbjct: 160 EVVDLLEGEEAGIKSATVEVRGPYAYGYLKGEAGTHRLVRLSPFDAAHRRHTSFALVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E D++I +ED+ F + G+ + + A I H+PTGI V
Sbjct: 220 PL-VEEDDDVEIREEDIRIDTFRASGHGGQHVNKTESAVRITHLPTGIVV 268
>sp|A9WPT6|RF2_RENSM Peptide chain release factor 2 OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=prfB PE=3 SV=1
Length = 374
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWD+P ++ +V KL+ + + L+ L + ++ +++ +LAE E D A +
Sbjct: 47 DLWDNPAEAQKVTSKLSHAQSKLERLETLTARIDDLEVLVELAESEH-DEDSLAEASKEL 105
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + K L + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA++ GY
Sbjct: 106 VSLQKSLQELEVVTLLAGEYDEREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYPT 165
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 166 SVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 225
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + ++I D D+ +F S G+ + A + H+PTG V
Sbjct: 226 PL-IEQTDSIEIPDNDIRVDVFRSSGPGGQSVNTTDSAVRLTHLPTGTVV 274
>sp|C5BYB6|RF2_BEUC1 Peptide chain release factor 2 OS=Beutenbergia cavernae (strain
ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=prfB PE=3 SV=1
Length = 374
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + L LR + ++ + + QLA E D A
Sbjct: 43 DLWDDPDAAQKVTSRLSHTQSELERLDTLRSRIDDLETLVQLA-AEEDDADTLAEAEAEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + E+ LL G D A VTI++G+ G+ +AE LL MY+RWA+++GY
Sbjct: 102 TKIRTSMGELEVRTLLAGEYDSREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERKGYPT 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 162 QVLDTSYAEEAGLKSATFEVKVPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I + D+ +F S G+ + A I H+PTGI V
Sbjct: 222 PL-IEQTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 270
>sp|A4X3K6|RF2_SALTO Peptide chain release factor 2 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=prfB PE=3 SV=1
Length = 373
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ +N L +LR + ++AK++ +LAE E+ D G
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEINKLAELRSRLDDAKVLLELAEAES-DPGALTEVEAEV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 AGLAKAIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ F S G+ + A I HIPTGI V
Sbjct: 223 PV-VEQTDHIDIPENEMRFDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 271
>sp|Q7U3W6|RF2_SYNPX Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102)
GN=prfB PE=3 SV=1
Length = 374
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ WDD + + + +L + + L D ++AK +L E+E D + A
Sbjct: 44 DFWDDQQAAQKQMRRLDEVKAQLQQLADWGGAVDDAKATLELYELEP-DEEMLTEAQEGL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + LD++E+ +LL G D EGA +TI AG+ G + WA+ LL MY RWA+ G +
Sbjct: 103 NQLRQGLDRWELERLLSGDYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS TIE E YA+GYL E G H L+ N + + + A ++V+
Sbjct: 163 TVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTSFAGIEVM 222
Query: 184 PLFLETSPDLQISDEDLLFS---SPSLPGERQSIAKPAACIQHIPTGIAVRGT 233
P ++ D+ I ++DL + S G+ + + A I HIPTG+AVR T
Sbjct: 223 P-KIDEEVDIDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCT 274
>sp|Q8NS78|RF2_CORGL Peptide chain release factor 2 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=prfB PE=3 SV=1
Length = 368
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + I D D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>sp|A4QCD3|RF2_CORGB Peptide chain release factor 2 OS=Corynebacterium glutamicum
(strain R) GN=prfB PE=3 SV=1
Length = 368
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + + DLR + E+ ++ +LAE E D + A
Sbjct: 43 SLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEEL 99
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
D+ L+D E+ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 100 ADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 159
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ D + G+KSAT +Y +G LS E GAH L+ + + + A V+V+
Sbjct: 160 DIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 219
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + I D D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 PV-VEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 268
>sp|A8M3R1|RF2_SALAI Peptide chain release factor 2 OS=Salinispora arenicola (strain
CNS-205) GN=prfB PE=3 SV=1
Length = 373
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD ++ +V +L+ + L DLR + ++ +++ +LAE E+ D G+
Sbjct: 44 DLWDDQARAQQVTSQLSYVNGEITKLTDLRSRLDDTQVLLELAEAES-DPGVLTEVAAEI 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++K +D+ E+ LL G D A V I+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 TGLAKSIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KSAT + YA+G LS E+G H L+ + + + A V+V+
Sbjct: 163 EVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + + I + ++ ++ S G+ + A I HIPTGI V
Sbjct: 223 PV-VEQTDHIDIPENEMRTDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 271
>sp|B8G607|RF2_CHLAD Peptide chain release factor 2 OS=Chloroflexus aggregans (strain
MD-66 / DSM 9485) GN=prfB PE=3 SV=1
Length = 367
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 117/234 (50%), Gaps = 17/234 (7%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME-----AIDYGLFKRA 61
LW+ P + E++ +L + V DL ++ + +LAE E A D RA
Sbjct: 44 LWNTPRVAQELMQRLTRLKEEVALWNDLDHRMTSLAELIELAEQEGDESLAADLAAELRA 103
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
V + + Q E+ LL GP D A ++I+AG G + WA LL MY RWA++
Sbjct: 104 ------VQREVAQRELEILLSGPYDDRDAFLSIQAGMGGTDAQDWAAMLLRMYTRWAERR 157
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY ++D + G+KSATIE YA+GY E G H LI N + + + A
Sbjct: 158 GYTVNLIDLSEGEEAGIKSATIEIRGPYAYGYARAEAGVHRLIRLSPFNAAHTRQTSFAR 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P ++ +P+++I EDL +F S G+ + A I H+PTGI V
Sbjct: 218 VEVMP-EVDDAPEVEIKPEDLRIDVFRSGGHGGQGVNTTDSAVRITHLPTGIVV 270
>sp|A4F8R2|RF2_SACEN Peptide chain release factor 2 OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=prfB PE=3 SV=1
Length = 367
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDD + V +L + +KDLR + E+ +++ +L+E E D GL + A
Sbjct: 43 DLWDDVEHAQRVSSQLVHRQSELRKIKDLRQRVEDLEVLYELSEDEGDDSGLAE-ADSER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L+ E+ LL G D A VTI+A + G+ +AE L+ MYVRWA++ Y
Sbjct: 102 TKLKKDLEALEVRTLLSGDYDQREAVVTIRAEAGGVDAADFAEMLMRMYVRWAERHEYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET ++I ++D+ +F S G+ + A I HIPTGI V
Sbjct: 222 PVVEETDH-VEIPEKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPTGIVV 270
>sp|B8HBH8|RF2_ARTCA Peptide chain release factor 2 OS=Arthrobacter chlorophenolicus
(strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
GN=prfB PE=3 SV=1
Length = 371
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 DLWDDPAAAQKITSRLSHRQSELERLTTLASRIDDLEVLVELGQDEG-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A V+I+AG+ G+ +AE L+ MY+RWA++ GY
Sbjct: 103 ESIQKALKNLEVVTLLSGEYDEREAVVSIRAGAGGVDAADFAEMLMRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V+D + G+KSAT E + YAFG LS E G H L+ + + + A V+V+
Sbjct: 163 TVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D ++ +F S G+ + A + HIPTG+ V
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGVVV 271
>sp|A3PWV0|RF2_MYCSJ Peptide chain release factor 2 OS=Mycobacterium sp. (strain JLS)
GN=prfB PE=3 SV=1
Length = 371
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>sp|Q1BBL5|RF2_MYCSS Peptide chain release factor 2 OS=Mycobacterium sp. (strain MCS)
GN=prfB PE=3 SV=1
Length = 371
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>sp|A1UDD2|RF2_MYCSK Peptide chain release factor 2 OS=Mycobacterium sp. (strain KMS)
GN=prfB PE=3 SV=1
Length = 371
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 14/235 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME----AIDYGLFKRA 61
NLWDD +++ +V +L+ + + +++LR + E+ ++ ++A E A + G A
Sbjct: 43 NLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADA 102
Query: 62 YRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
A L V ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 103 ELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQH 160
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLA 178
Y V D + G+KSAT YA+G LS E G H L+ F N S + + A
Sbjct: 161 DYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFA 219
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ + + + DL ++ S G+ + A + HIPTGI V
Sbjct: 220 DVEVLPV-VETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>sp|A0JYC5|RF2_ARTS2 Peptide chain release factor 2 OS=Arthrobacter sp. (strain FB24)
GN=prfB PE=3 SV=1
Length = 371
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDDP + ++ +L+ + L L + ++ +++ +L + E D A
Sbjct: 44 NLWDDPAAAQKITSRLSHRQSELERLNTLVSRIDDLEVLVELGQDED-DADSMGEAAAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ K L E+ LL G D A VTI+AG+ G+ +AE LL MY+RWA++ GY
Sbjct: 103 ESIRKSLKDLEVVTLLSGEFDEREAVVTIRAGAGGVDAADFAEMLLRMYLRWAERHGYPT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT E YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 TIMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
PL +E + + I D ++ +F S G+ + A + HIPTG V
Sbjct: 223 PL-IEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVRLTHIPTGTVV 271
>sp|B1MEU8|RF2_MYCA9 Peptide chain release factor 2 OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=prfB PE=3 SV=1
Length = 367
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + +V +L+ + + +++LR + ++ ++ +LAE E+ D + A
Sbjct: 43 NLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAE-ESEDNSVVAEADAER 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+ Y
Sbjct: 102 VKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKYPV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACVDV 182
V D + G+KSAT +A+G LS E G H L+ F N S + + A V+V
Sbjct: 162 EVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQS-RRQTSFADVEV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + I + DL ++ S G+ + A + HIPTGI V
Sbjct: 221 LPV-VETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>sp|Q0S2Q6|RF2_RHOSR Peptide chain release factor 2 OS=Rhodococcus sp. (strain RHA1)
GN=prfB PE=3 SV=1
Length = 368
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E D A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGADAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MYVRWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>sp|C1B1L3|RF2_RHOOB Peptide chain release factor 2 OS=Rhodococcus opacus (strain B4)
GN=prfB PE=3 SV=1
Length = 368
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ S + +++LR + ++ ++ +LAE E + A R SL
Sbjct: 44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGAEAIADADAERHSL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A V I++G+ G+ WAE L+ MY+RWA+K GY
Sbjct: 104 REDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYIRWAEKHGYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y++G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ + +++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>sp|A0QU58|RF2_MYCS2 Peptide chain release factor 2 OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=prfB PE=1 SV=1
Length = 368
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD T++ +V L+ + + ++ LR + ++ ++ +LA + G A
Sbjct: 43 NLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYELA----AEAGGPDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA+K
Sbjct: 99 AELAKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHD 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLAC 179
Y + D + G+KSAT +A+G LS E G H L+ F N S + + A
Sbjct: 159 YPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSR-RQTSFAD 217
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V+P+ +ET+ ++I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 218 VEVLPV-VETTDHIEIPENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>sp|C3PES4|RF2_CORA7 Peptide chain release factor 2 OS=Corynebacterium aurimucosum
(strain ATCC 700975 / DSM 44827 / CN-1) GN=prfB PE=3
SV=1
Length = 368
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + +V +L+ + L LR + E+ ++++LAE E D +
Sbjct: 43 SLWDDPDHAQKVTSELSAQQAKLRKLNSLRGRIEDLPVMSELAEEEG-DEASQELVETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ ++ E++ +L G D A + I++G+ G+ WAE L+ MY RWA+K G++
Sbjct: 102 KELGAAIESLEVTTMLSGEYDEREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKV 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT EY +G LS E GAH L+ + + + A V+V+
Sbjct: 162 DVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVL 221
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + +++ D ++ ++ S G+ + A + HIPTGI V
Sbjct: 222 PV-VEQTDSIEVPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>sp|C0ZXD0|RF2_RHOE4 Peptide chain release factor 2 OS=Rhodococcus erythropolis (strain
PR4 / NBRC 100887) GN=prfB PE=3 SV=1
Length = 368
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+D + +V +L+ + + + LR + +E ++ +LAE E D A RASL
Sbjct: 44 LWNDQEHAQQVTSQLSHAQAELRRIVALRERLDEMPILYELAEDEGPDAVADADAERASL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
D++ + E+ +L G D A + I++G+ GI WAE L+ MY+RWA+K Y
Sbjct: 104 RDDIAAM----EVKTMLSGEYDERDALINIRSGAGGIDAADWAEMLMRMYIRWAEKHDYG 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
V D + G+KSAT + Y +G LS E G H L+ + + + A V+V
Sbjct: 160 VEVYDTSYAEEAGLKSATFAIKGPYTYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +ET+ ++I++ D+ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VETTDHIEINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>sp|Q4L4H9|RF2_STAHJ Peptide chain release factor 2 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=prfB PE=3 SV=2
Length = 371
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WDD K+ +V+ K VVN +L + E+ +L + E +D +
Sbjct: 39 MMTEPDFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQ-EELDGDVKSD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ LD + +DQ+E+ LL GP+D A + + G+ G + WA LL MY R+ ++
Sbjct: 98 LEQNVLDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 QGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 218 SCDVIPEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
>sp|A0LVP4|RF2_ACIC1 Peptide chain release factor 2 OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=prfB PE=3 SV=1
Length = 369
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 7/229 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LW+DP + V +L+ + ++ LR + ++ ++ +LAE E D A
Sbjct: 45 LWNDPENAQRVTSRLSFLQAEIRRVEGLRKRLDDVMVLFELAEAEN-DEPTRTEALAEMA 103
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+ K +D E+ LL G D A VTI + + G+ WA+ LL MY+RWA++ GY
Sbjct: 104 ALQKAIDDLEVRTLLSGEYDAREALVTINSQAGGVDAADWAQMLLRMYLRWAERHGYPTE 163
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
++D + G+KSAT + +G L+ E G H L+ + + + A VDVVP
Sbjct: 164 ILDTSYAEEAGIKSATFIVHAPFTYGLLAAEHGTHRLVRISPFDNQARRQTSFAGVDVVP 223
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ +E + + I ++++ +F S G+ + A I H+PTGI V
Sbjct: 224 V-VEKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAVRITHLPTGIVV 271
>sp|A1T6D1|RF2_MYCVP Peptide chain release factor 2 OS=Mycobacterium vanbaalenii (strain
DSM 7251 / PYR-1) GN=prfB PE=3 SV=1
Length = 368
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 13/233 (5%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
LWDD ++ +V L+ + + +++LR + E+ ++ +LA E G A
Sbjct: 43 QLWDDQARAQKVTSDLSHAQGELRRIEELRGRLEDLPVLYELAAEE----GGSDEVAEAD 98
Query: 66 LDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEG 122
+++KL ++ E+ LL G D A VTI++G+ G+ WAE L+ MY+RWA++
Sbjct: 99 AELTKLREDIEAMEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHK 158
Query: 123 YRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACV 180
Y V D + G+KSAT YA+G LS E G H L+ + + + A V
Sbjct: 159 YPVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQNRRQTSFADV 218
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ ET+ ++I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 219 EVLPV-TETTDHIEIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 270
>sp|Q0SR12|RF2_CLOPS Peptide chain release factor 2 OS=Clostridium perfringens (strain
SM101 / Type A) GN=prfB PE=3 SV=1
Length = 364
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 47 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 104
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 105 ALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 164
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 165 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 224
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 225 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 273
>sp|Q82D82|RF2_STRAW Peptide chain release factor 2 OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=prfB PE=3 SV=1
Length = 368
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 TAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+ + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +ET+ ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VETTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>sp|Q0TNE1|RF2_CLOP1 Peptide chain release factor 2 OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2
Length = 362
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
WDD K+ EV + ++ K+L + ++ +++ +L ME D K
Sbjct: 45 FWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVK 102
Query: 67 DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126
+SK +D ++ +L G D A +T+ G G W E LL MY RW +K+GY
Sbjct: 103 ALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLE 162
Query: 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVVP 184
+D GVKS T++ + E+A+GYL E G H L+ N + + + A V+V+P
Sbjct: 163 TIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 222
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
L + D++I+ DL + + G+ + + A I HIPTGI V+
Sbjct: 223 -ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQ 271
>sp|Q6NIM2|RF2_CORDI Peptide chain release factor 2 OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=prfB PE=3 SV=1
Length = 369
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDDP + +V +L+ + L LR + ++ ++ +LA+ E D A L
Sbjct: 44 LWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELADEEGEDALALADEELAEL 103
Query: 67 --DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
DV L E+ +L G D A + I++G+ G+ WAE L+ MY+RWA+K ++
Sbjct: 104 TADVEAL----EVKTMLSGEYDSREAVINIRSGAGGVDAADWAEMLMRMYIRWAEKNDHK 159
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
+ D + G+KSAT EY +G LS E GAH L+ + + + A ++V
Sbjct: 160 VDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEIEV 219
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P+ +E + + I D ++ ++ S G+ + A + HIPTGI V
Sbjct: 220 LPV-VEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 269
>sp|Q53915|RF2_STRCO Peptide chain release factor 2 OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=prfB PE=3 SV=2
Length = 368
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ ++ ++AE E D A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAE-EEDDPDTRAEAESEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A V I+A + G+ +AE+L MY+RWA++ GY+
Sbjct: 103 AAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+++
Sbjct: 163 EVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEIL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + HIPTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVV 271
>sp|Q5YR52|RF2_NOCFA Peptide chain release factor 2 OS=Nocardia farcinica (strain IFM
10152) GN=prfB PE=3 SV=1
Length = 372
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLI----------AQLAEMEAIDY 55
+LW+D + V +L+ + + ++DLR + E+ ++ A+ A +E D
Sbjct: 43 DLWNDQDHAQRVTSELSHAQGELRRVEDLRRRLEDLPVLYELAEGEEGEARTAALEEAD- 101
Query: 56 GLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYV 115
A RA+L ++ E+ LL G D A V I++G+ G+ WAE L+ MY+
Sbjct: 102 -----AERAALHSD--VEAMEVRTLLSGEYDKREALVNIRSGAGGVDAADWAEMLMRMYI 154
Query: 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPH 173
RWAD+ GY V D + G+KSAT + YA+G LS E G H L+ +
Sbjct: 155 RWADRHGYPVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLVRISPFDNQGRR 214
Query: 174 EATLACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+ + A V+V+P+ +ET+ +++ + ++ ++ S G+ + A I HIPTGI V
Sbjct: 215 QTSFAEVEVLPV-VETTDHIEVPETEIRVDVYRSSGPGGQSVNTTDSAVRITHIPTGIVV 273
>sp|Q6A808|RF2_PROAC Peptide chain release factor 2 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=prfB PE=3 SV=1
Length = 368
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
NLWDD + V +L+ + L+ LR + E+ ++ + A + D A +
Sbjct: 44 NLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFAAADD-DKESLAEATTET 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + + +D E+ LL G D A VTI++ + G+ +AE LL MY+RW+++ GY+
Sbjct: 103 VKLREEIDALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFAEMLLRMYLRWSERHGYKV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++D + G+KSAT +A+G LS E G H L+ + + + A V+V+
Sbjct: 163 EILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET + I + DL +F + G+ + A + H+PTGI V
Sbjct: 223 PVVEETDH-VDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPTGIVV 271
>sp|A6WEK6|RF2_KINRD Peptide chain release factor 2 OS=Kineococcus radiotolerans (strain
ATCC BAA-149 / DSM 14245 / SRS30216) GN=prfB PE=3 SV=1
Length = 367
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 9/231 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + V +L+ ++ ++ + + ++ +++ +L+E E D A
Sbjct: 43 SLWDDPEHAQTVTSRLSAVQAELDRIEKMGGRIDDLEVLVELSEDEH-DADSLAEAETEL 101
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+V + L Q E+ LL G D A VTI++ + G+ +AE L+ MY+RWA++ GY+
Sbjct: 102 NEVKEQLAQLEVRTLLSGEYDSREAIVTIRSEAGGVDAADFAEMLMRMYLRWAERRGYKS 161
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V D + G+KSAT + YA+G LS E G H L+ + + + A V+V+
Sbjct: 162 EVYDTSYAEEAGIKSATFKVAAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 221
Query: 184 PLFLETS----PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ ET P+ ++ + S P G+ + A + H+PTGI V
Sbjct: 222 PVVAETDHVDVPENEVRVDVYRSSGPG--GQSVNTTDSAVRLTHLPTGIVV 270
>sp|B1VV08|RF2_STRGG Peptide chain release factor 2 OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=prfB PE=3 SV=1
Length = 368
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+LWDDP + ++ KL+ V + LR + ++ +++ +LA E A
Sbjct: 44 SLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLEVLFELAADEGDAD-AQAEAEAEL 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
V K LD+ E+ LL G D A VTI+A + G+ +AE+L MY+RWA++ Y+
Sbjct: 103 ESVRKALDEMEVRTLLSGEYDAREALVTIRAEAGGVDAADFAEKLQRMYLRWAEQHNYKT 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
V + + G+KS T + YA+G LS E G H L+ + + + A V+V+
Sbjct: 163 EVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVL 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P+ +E + ++I + +L ++ S G+ + A + H+PTGI V
Sbjct: 223 PV-VEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVV 271
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5)
GN=prfB PE=3 SV=1
Length = 373
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 10/231 (4%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEE-AKLIAQLAEMEAIDYGLFKRAYRA 64
N W+D K+ +V+ + + +N LK+L ++ +L+ +E + + + +
Sbjct: 44 NFWEDQEKAKQVIQRRKWVEETLNKLKNLEKSVKDLEELVEITSEEDTETWAMMDEEIK- 102
Query: 65 SLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR 124
+V + L + E+ L G D + A +TI+AG+ G WA+ L MY RWA+K+GY
Sbjct: 103 --EVERTLRELELKTYLSGEMDAKNAYLTIQAGAGGTEACDWADMLFRMYKRWAEKKGYE 160
Query: 125 GRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDV 182
++D G+KS T+ + YA+GYL GE G H L+ + + + A V V
Sbjct: 161 VELIDITPDDVAGIKSVTVLVKGPYAYGYLKGEQGVHRLVRISPFDANARRHTSFAAVSV 220
Query: 183 VPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+P ++ ++I EDL F + G+ + A I HIPTGI V
Sbjct: 221 MPQ-IDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRITHIPTGITV 270
>sp|A4TDE5|RF2_MYCGI Peptide chain release factor 2 OS=Mycobacterium gilvum (strain
PYR-GCK) GN=prfB PE=3 SV=1
Length = 372
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 12/233 (5%)
Query: 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASL 66
LWDD ++ +V L+ + + +++LR + ++ ++ +LA E G + A
Sbjct: 44 LWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYELAAEEE-GAGSSEAFAEADA 102
Query: 67 DVSKLLDQ---YEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGY 123
+++KL + E+ LL G D A V I++G+ G+ WAE L+ MY+RWA++ Y
Sbjct: 103 ELAKLREDIAGMEVRTLLSGEYDEREALVNIRSGAGGVDAADWAEMLMRMYIRWAEQHDY 162
Query: 124 RGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNGSFPHEATLACV 180
V D + G+KSAT YA+G LS E G H L+ F N S + + A V
Sbjct: 163 PVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRLVRISPFDNQS-RRQTSFADV 221
Query: 181 DVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
+V+P+ +ET+ + I + D+ ++ S G+ + A + HIPTGI V
Sbjct: 222 EVLPV-VETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVV 273
>sp|Q6GIN7|RF2_STAAR Peptide chain release factor 2 OS=Staphylococcus aureus (strain
MRSA252) GN=prfB PE=3 SV=1
Length = 369
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDGEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ + VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVKTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>sp|A5IM04|RF2_THEP1 Peptide chain release factor 2 OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=prfB PE=3 SV=1
Length = 367
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVV 269
>sp|B7IE81|RF2_THEAB Peptide chain release factor 2 OS=Thermosipho africanus (strain
TCF52B) GN=prfB PE=3 SV=1
Length = 369
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
+ W D K+ E+ K K+++ +KD+ K E+ +L++ D +
Sbjct: 44 DFWSDQRKAREISQKAQRIRKIIDDMKDIEAKFEDLDAAIELSDE---DQSFVETIKEMV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ K + +E+ +L G D A +TI G+ G + WA LL MY+RWA+++G+
Sbjct: 101 EEIEKKVKTFELELILNGKFDASNAYLTIHPGAGGTESQDWASMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
++VD + G+KSA I + +YA+GYL E G H L+ + + + A V+V+
Sbjct: 161 QIVDYQPGEEAGIKSAMIYIKGDYAYGYLKYERGVHRLVRISPFDANKRRHTSFASVNVI 220
Query: 184 PLFLETS------PDLQISDEDLLFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P + DL+I + + G+ + + A I HIPTGI V
Sbjct: 221 PEIDDDIDIEINPEDLRID----TYRASGAGGQYVNKTESAVRITHIPTGIVV 269
>sp|Q9X1R5|RF2_THEMA Peptide chain release factor 2 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfB PE=3 SV=1
Length = 369
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 46 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 102
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 103 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 162
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 163 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 222
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 223 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVV 271
>sp|Q49VV3|RF2_STAS1 Peptide chain release factor 2 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=prfB PE=3 SV=2
Length = 373
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ + WD+ K+ +V+ K VVNA + L + E+ L +E D + +
Sbjct: 39 MMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQD 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
++ D LDQ+E+ LL GP D A + + G+ G + W LL MY R+ ++
Sbjct: 98 LEQSVQDFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQ 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G+ + D GVKS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F T ++ I+ +D+ F + G+ + + A I H PTGI V
Sbjct: 218 SCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVV 272
>sp|B1LB88|RF2_THESQ Peptide chain release factor 2 OS=Thermotoga sp. (strain RQ2)
GN=prfB PE=3 SV=1
Length = 367
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++WDD K+ E KL + LK +R E+ ++ +L++ D + +
Sbjct: 44 SVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE---DQEMAQHVEEIV 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
++ + + E+ +L G D A +++ G+ G + WA+ LL MY+RWA+++G+
Sbjct: 101 QELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDV 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLACVDVV 183
+V+ + G+K ATI + EYA+GYL E+G H L+ + + + A V+V+
Sbjct: 161 EIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTSFASVNVI 220
Query: 184 PLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
P ++ D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 221 PE-IDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVV 269
>sp|Q2JEW7|RF2_FRASC Peptide chain release factor 2 OS=Frankia sp. (strain CcI3) GN=prfB
PE=3 SV=1
Length = 366
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 19/234 (8%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAY--- 62
+LW D ++ V +L+ + + ++ LR + ++ A L D L A
Sbjct: 43 DLWSDQDRAQAVTRRLSSTRGDIARVEGLRRRLDDIAAAADLG-----DEDLLAEAAADL 97
Query: 63 -RASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKE 121
R S D++ L E+ LL G D A V + AG+ G+ W LL MY+RWA++
Sbjct: 98 PRLSSDIAGL----EVRTLLSGEYDERDAIVQLSAGAGGVDAADWTAMLLRMYLRWAERH 153
Query: 122 GYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLAC 179
GY V D + G+KSAT + + YA+G L E G H L+ + + + A
Sbjct: 154 GYATEVFDTSEAEEAGLKSATFQVKAPYAYGTLRSEHGVHRLVRISPFDNQNRRQTSFAG 213
Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
V+V P+ +E S + I D+DL +F S G+ + A I H+PTGI V
Sbjct: 214 VEVTPV-VELSDHVDIDDKDLRIDIFRSSGPGGQGVNTTDSAVRITHLPTGIVV 266
>sp|Q6GB76|RF2_STAAS Peptide chain release factor 2 OS=Staphylococcus aureus (strain
MSSA476) GN=prfB PE=3 SV=1
Length = 369
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>sp|Q7A6R4|RF2_STAAN Peptide chain release factor 2 OS=Staphylococcus aureus (strain
N315) GN=prfB PE=1 SV=2
Length = 369
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>sp|Q99VM1|RF2_STAAM Peptide chain release factor 2 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=prfB PE=1 SV=2
Length = 369
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>sp|Q5HHR5|RF2_STAAC Peptide chain release factor 2 OS=Staphylococcus aureus (strain
COL) GN=prfB PE=3 SV=1
Length = 369
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>sp|Q2YSH5|RF2_STAAB Peptide chain release factor 2 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=prfB PE=3 SV=2
Length = 369
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
>sp|A6TZN3|RF2_STAA2 Peptide chain release factor 2 OS=Staphylococcus aureus (strain
JH1) GN=prfB PE=3 SV=1
Length = 369
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)
Query: 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKR 60
M+ N WD+ TK+ +++ K +VN K L+ + ++ L + E D + +
Sbjct: 39 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQ-EEFDEEMKED 97
Query: 61 AYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADK 120
+ ++ +D+YE+ LL GP+D A + + G+ G + WA L MY R+ +K
Sbjct: 98 LEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEK 157
Query: 121 EGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFP--NGSFPHEATLA 178
+G++ VD G+KS T+ + A+GYL E G H L+ + S + A
Sbjct: 158 KGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFA 217
Query: 179 CVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAV 230
DV+P F +++I+ +D+ F + G+ + + A I H P+GI V
Sbjct: 218 SCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVV 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,764,667
Number of Sequences: 539616
Number of extensions: 3687647
Number of successful extensions: 9820
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 8161
Number of HSP's gapped (non-prelim): 942
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)