Query 026460
Match_columns 238
No_of_seqs 157 out of 1382
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 6.8E-83 1.5E-87 576.7 25.4 236 1-238 22-266 (363)
2 PRK06746 peptide chain release 100.0 2.6E-77 5.6E-82 544.4 27.9 235 2-238 1-240 (326)
3 PRK05589 peptide chain release 100.0 2.8E-77 6.2E-82 544.8 27.9 233 2-237 1-238 (325)
4 PRK07342 peptide chain release 100.0 3E-76 6.6E-81 539.8 27.9 235 2-238 3-242 (339)
5 TIGR00020 prfB peptide chain r 100.0 7.6E-76 1.6E-80 543.1 28.1 235 2-238 39-278 (364)
6 PRK00578 prfB peptide chain re 100.0 5.5E-75 1.2E-79 538.2 27.1 236 1-238 38-278 (367)
7 TIGR00019 prfA peptide chain r 100.0 5.1E-74 1.1E-78 529.9 27.7 234 1-238 22-264 (360)
8 PRK00591 prfA peptide chain re 100.0 6.8E-73 1.5E-77 522.6 27.7 235 1-238 21-264 (359)
9 PRK08787 peptide chain release 100.0 5.5E-71 1.2E-75 499.7 24.2 213 24-238 2-219 (313)
10 KOG2726 Mitochondrial polypept 100.0 7.3E-67 1.6E-71 480.3 22.5 226 2-238 57-291 (386)
11 COG1186 PrfB Protein chain rel 100.0 2E-59 4.3E-64 409.3 12.6 148 90-238 1-153 (239)
12 PRK08179 prfH peptide chain re 100.0 6.4E-55 1.4E-59 374.7 15.1 143 90-238 2-150 (200)
13 TIGR03072 release_prfH putativ 100.0 2.3E-54 5E-59 371.3 16.0 143 90-238 1-149 (200)
14 PF03462 PCRF: PCRF domain; I 100.0 1.2E-33 2.7E-38 224.1 11.6 107 51-157 5-115 (115)
15 PF00472 RF-1: RF-1 domain; I 99.8 3.5E-19 7.6E-24 141.0 3.7 49 190-238 4-55 (113)
16 PRK09256 hypothetical protein; 99.4 6.5E-14 1.4E-18 114.6 3.6 48 191-238 6-80 (138)
17 KOG3429 Predicted peptidyl-tRN 97.1 0.00039 8.5E-09 58.3 2.8 30 194-223 36-68 (172)
18 COG0216 PrfA Protein chain rel 78.8 13 0.00029 35.0 8.6 65 12-76 36-103 (363)
19 PF13710 ACT_5: ACT domain; PD 73.2 10 0.00022 26.5 5.0 38 111-148 6-43 (63)
20 KOG1760 Molecular chaperone Pr 68.3 64 0.0014 26.3 9.4 70 7-76 15-101 (131)
21 PRK06737 acetolactate synthase 65.9 20 0.00042 26.5 5.3 39 111-149 16-54 (76)
22 PRK11152 ilvM acetolactate syn 63.4 17 0.00038 26.7 4.7 40 112-151 18-57 (76)
23 PF03962 Mnd1: Mnd1 family; I 60.2 1E+02 0.0023 26.3 9.6 71 7-79 56-126 (188)
24 PF09032 Siah-Interact_N: Siah 58.8 31 0.00068 25.7 5.3 44 30-77 4-47 (79)
25 PRK13562 acetolactate synthase 57.0 32 0.0007 25.9 5.2 36 114-149 19-55 (84)
26 PRK11020 hypothetical protein; 52.8 90 0.0019 25.0 7.2 25 52-76 27-51 (118)
27 KOG3032 Uncharacterized conser 49.4 83 0.0018 28.3 7.3 40 6-46 144-184 (264)
28 PF00587 tRNA-synt_2b: tRNA sy 49.4 59 0.0013 26.6 6.2 46 101-146 121-167 (173)
29 PF14257 DUF4349: Domain of un 46.2 1.2E+02 0.0027 26.7 8.2 43 54-96 160-203 (262)
30 PF10146 zf-C4H2: Zinc finger- 43.3 2.1E+02 0.0046 25.4 9.0 26 17-42 13-38 (230)
31 TIGR02421 QEGLA conserved hypo 42.2 30 0.00065 32.9 3.7 164 8-177 17-211 (366)
32 COG3978 Acetolactate synthase 41.1 47 0.001 25.1 3.8 52 105-156 11-62 (86)
33 TIGR03545 conserved hypothetic 39.5 1.1E+02 0.0023 30.8 7.2 18 100-117 287-304 (555)
34 COG0103 RpsI Ribosomal protein 39.5 22 0.00047 29.1 2.0 16 170-185 8-24 (130)
35 PRK08178 acetolactate synthase 39.2 58 0.0013 25.2 4.2 34 116-149 27-60 (96)
36 PF08399 VWA_N: VWA N-terminal 37.5 18 0.00039 29.1 1.2 18 209-229 56-73 (123)
37 KOG0971 Microtubule-associated 37.4 2.3E+02 0.0049 30.6 9.2 48 34-84 302-354 (1243)
38 PRK12723 flagellar biosynthesi 36.3 3.9E+02 0.0084 25.5 12.8 35 95-132 182-216 (388)
39 PF15290 Syntaphilin: Golgi-lo 36.2 3.1E+02 0.0068 25.4 9.0 73 22-96 75-156 (305)
40 KOG1697 Mitochondrial/chloropl 35.5 32 0.0007 31.2 2.6 17 170-186 153-170 (275)
41 PF13450 NAD_binding_8: NAD(P) 34.7 62 0.0013 22.6 3.6 36 120-164 17-53 (68)
42 PF07106 TBPIP: Tat binding pr 34.5 2.6E+02 0.0057 23.0 7.9 24 10-33 70-93 (169)
43 cd01020 TroA_b Metal binding p 33.7 1.2E+02 0.0027 26.7 6.1 20 4-23 94-113 (264)
44 PF04880 NUDE_C: NUDE protein, 33.6 64 0.0014 27.4 4.0 50 32-84 3-52 (166)
45 TIGR00634 recN DNA repair prot 32.3 3.1E+02 0.0068 27.1 9.3 65 7-74 296-364 (563)
46 PF08014 DUF1704: Domain of un 32.0 1.5E+02 0.0033 27.9 6.6 71 101-177 109-188 (349)
47 KOG3684 Ca2+-activated K+ chan 31.9 3E+02 0.0064 27.3 8.6 63 10-75 387-453 (489)
48 PF03288 Pox_D5: Poxvirus D5 p 31.1 38 0.00083 24.5 2.0 21 105-125 22-42 (86)
49 PF04800 ETC_C1_NDUFA4: ETC co 30.3 44 0.00094 26.0 2.3 18 115-132 62-79 (101)
50 cd01145 TroA_c Periplasmic bin 29.6 1.8E+02 0.004 24.5 6.3 19 4-22 107-125 (203)
51 PRK07417 arogenate dehydrogena 29.4 1.6E+02 0.0035 26.1 6.2 21 26-46 236-256 (279)
52 TIGR01219 Pmev_kin_ERG8 phosph 29.4 1.7E+02 0.0037 28.7 6.7 45 86-133 393-442 (454)
53 PF02815 MIR: MIR domain; Int 28.9 77 0.0017 26.5 3.8 32 205-236 126-158 (190)
54 KOG4657 Uncharacterized conser 28.8 1.6E+02 0.0034 26.5 5.7 33 56-88 86-119 (246)
55 KOG0544 FKBP-type peptidyl-pro 28.8 34 0.00073 26.8 1.4 39 120-168 57-95 (108)
56 KOG1086 Cytosolic sorting prot 28.3 2.7E+02 0.0058 27.6 7.6 18 54-71 244-262 (594)
57 PF03101 FAR1: FAR1 DNA-bindin 27.9 67 0.0015 23.2 2.9 36 112-147 1-37 (91)
58 PF14257 DUF4349: Domain of un 27.7 3.1E+02 0.0067 24.1 7.7 58 12-76 132-189 (262)
59 PF12685 SpoIIIAH: SpoIIIAH-li 27.6 1.6E+02 0.0036 25.0 5.7 46 39-84 101-147 (196)
60 PF02815 MIR: MIR domain; Int 27.1 63 0.0014 27.0 2.9 27 209-236 62-88 (190)
61 PF12777 MT: Microtubule-bindi 26.7 1.1E+02 0.0024 28.4 4.8 30 2-33 179-208 (344)
62 cd00772 ProRS_core Prolyl-tRNA 26.7 1.8E+02 0.0038 26.0 5.9 51 95-145 152-205 (264)
63 smart00472 MIR Domain in ryano 26.0 63 0.0014 21.3 2.3 21 216-236 7-27 (57)
64 PF12325 TMF_TATA_bd: TATA ele 25.8 3.4E+02 0.0075 21.6 9.6 11 58-68 98-108 (120)
65 PF05055 DUF677: Protein of un 25.7 3.5E+02 0.0077 25.4 7.9 47 30-76 265-315 (336)
66 cd00779 ProRS_core_prok Prolyl 25.3 2.4E+02 0.0052 24.9 6.4 51 97-147 148-198 (255)
67 PF01297 TroA: Periplasmic sol 25.3 2.1E+02 0.0045 24.9 6.0 21 3-23 90-110 (256)
68 cd04911 ACT_AKiii-YclM-BS_1 AC 25.3 28 0.0006 25.7 0.4 10 219-228 30-39 (76)
69 PF10819 DUF2564: Protein of u 25.2 3E+02 0.0064 20.6 6.5 42 31-73 5-46 (79)
70 PRK11861 bifunctional prephena 25.1 2.9E+02 0.0062 28.1 7.7 45 23-72 174-218 (673)
71 PRK10869 recombination and rep 25.0 5.1E+02 0.011 25.8 9.3 25 8-32 292-316 (553)
72 cd00770 SerRS_core Seryl-tRNA 24.7 1.3E+02 0.0028 27.3 4.7 46 100-145 172-217 (297)
73 PF07962 Swi3: Replication For 24.0 93 0.002 23.1 3.0 21 99-120 28-48 (83)
74 PF03233 Cauli_AT: Aphid trans 23.2 3.3E+02 0.0071 23.1 6.4 47 27-76 109-155 (163)
75 PF08657 DASH_Spc34: DASH comp 23.1 5.6E+02 0.012 23.1 9.0 26 7-32 172-200 (259)
76 PF08317 Spc7: Spc7 kinetochor 22.6 6E+02 0.013 23.3 9.8 23 107-129 278-300 (325)
77 cd01018 ZntC Metal binding pro 22.3 2.9E+02 0.0064 24.3 6.5 20 4-23 111-130 (266)
78 PRK11895 ilvH acetolactate syn 21.8 2.7E+02 0.0059 23.3 5.7 55 114-168 19-79 (161)
79 TIGR03561 organ_hyd_perox pero 21.5 3.1E+02 0.0067 21.5 5.8 23 104-126 48-70 (134)
80 PF14201 DUF4318: Domain of un 21.4 2.8E+02 0.0061 20.3 5.0 34 108-148 18-51 (74)
81 PRK05892 nucleoside diphosphat 21.4 4.7E+02 0.01 21.6 7.8 64 5-76 4-67 (158)
82 CHL00100 ilvH acetohydroxyacid 21.3 2.3E+02 0.005 24.0 5.3 58 111-168 16-79 (174)
83 PF08317 Spc7: Spc7 kinetochor 21.3 6.4E+02 0.014 23.1 14.1 20 10-29 207-226 (325)
84 TIGR00019 prfA peptide chain r 21.2 7.2E+02 0.016 23.6 9.1 34 12-45 36-69 (360)
85 PF01920 Prefoldin_2: Prefoldi 21.2 3.4E+02 0.0074 19.9 9.2 65 12-76 5-82 (106)
86 PF05591 DUF770: Protein of un 21.2 4.9E+02 0.011 21.7 7.1 55 11-65 101-155 (157)
87 KOG0250 DNA repair protein RAD 21.0 4.4E+02 0.0096 28.8 8.2 48 2-49 175-234 (1074)
88 COG3074 Uncharacterized protei 20.9 3.5E+02 0.0076 19.9 6.2 19 30-48 5-23 (79)
89 COG5023 Tubulin [Cytoskeleton] 20.6 2.3E+02 0.0049 27.5 5.5 36 52-87 405-440 (443)
90 PF04983 RNA_pol_Rpb1_3: RNA p 20.6 77 0.0017 25.6 2.2 29 99-127 127-155 (158)
91 PRK15365 type III secretion sy 20.5 4.2E+02 0.0092 20.7 10.1 26 13-38 10-35 (107)
92 smart00787 Spc7 Spc7 kinetocho 20.5 6.9E+02 0.015 23.1 9.8 23 107-129 273-295 (312)
93 TIGR02865 spore_II_E stage II 20.4 9.9E+02 0.021 24.9 12.4 34 82-118 488-521 (764)
94 COG4026 Uncharacterized protei 20.4 2.8E+02 0.0061 25.0 5.7 47 60-106 167-215 (290)
95 COG4915 XpaC 5-bromo-4-chloroi 20.3 2.3E+02 0.0051 24.7 5.0 62 7-69 131-192 (204)
96 PRK09545 znuA high-affinity zi 20.3 3.4E+02 0.0073 24.8 6.5 19 4-22 144-162 (311)
97 PF04350 PilO: Pilus assembly 20.1 4.2E+02 0.0091 20.5 7.3 58 107-164 52-114 (144)
98 PF07888 CALCOCO1: Calcium bin 20.0 5.3E+02 0.012 26.0 8.2 35 36-76 417-451 (546)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-83 Score=576.72 Aligned_cols=236 Identities=21% Similarity=0.315 Sum_probs=225.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHH----H
Q 026460 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY----E 76 (238)
Q Consensus 1 ~~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~l----e 76 (238)
+|++|++.+|++++++++++++.|.++++.|++|++..+++.+..+|+.++ .|+||++||++|+..++..+..| +
T Consensus 22 ~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~~Ei~~~~~~~~~le~~L~ 100 (363)
T COG0216 22 LLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAEEEIKELEAKIEELEEELK 100 (363)
T ss_pred HhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999998753 69999999999999998887654 5
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecccccccccc
Q 026460 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (238)
Q Consensus 77 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~ 156 (238)
..|||+||+|.++++||||||+||+||++||++|||||.+||+.+||++++++.++++.||||++++.|+|.+||+.|||
T Consensus 101 ~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~I~G~gvys~LKf 180 (363)
T COG0216 101 ILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIASISGKGVYSRLKF 180 (363)
T ss_pred HhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEEEeccchhhhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEE
Q 026460 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVR 231 (238)
Q Consensus 157 e~Gvhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~ 231 (238)
|+|||||| +|.|+++||+||| |+|+|||++ ++..++.|+|+|||||| |||+ |||||||+|||||||+||||+|+
T Consensus 181 EsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~-ee~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAVRiTHlPTGIvV~ 259 (363)
T COG0216 181 ESGVHRVQRVPATESQGRIHTSAATVAVLPEV-EEVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 259 (363)
T ss_pred ccCccceeccccccCCCceeecceeEEeccCC-CcccccccChHHceeeeeecCCCCCCCcCccchhheeeecCCceEEE
Confidence 99999999 9999999999999 999999998 33457999999999999 9999 99999999999999999999999
Q ss_pred eeccccC
Q 026460 232 GTTLQIR 238 (238)
Q Consensus 232 ~q~eRs~ 238 (238)
||+|||.
T Consensus 260 cQderSQ 266 (363)
T COG0216 260 CQDERSQ 266 (363)
T ss_pred ecchhhh
Confidence 9999984
No 2
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=2.6e-77 Score=544.40 Aligned_cols=235 Identities=26% Similarity=0.422 Sum_probs=227.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll~ 81 (238)
|..|+||+|++++++++++++.|..+++.|+++....++++++.+|+++ +.|++|+++|.+|++.+.+.++++++.+||
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-~~d~e~~~~a~~e~~~l~~~l~~le~~~l~ 79 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE-EYDEDLHEELESEVKGLIQEMNEYELQLLL 79 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5679999999999999999999999999999999999999999999864 459999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccc
Q 026460 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (238)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvh 161 (238)
++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|+|.|+|++||++|++|+|||
T Consensus 80 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvH 159 (326)
T PRK06746 80 SDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVH 159 (326)
T ss_pred CCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccc
Q 026460 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 162 r~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eR 236 (238)
||| +|||+++|||||| |+|+|+|.+. +++++.|+++||+|+| |||| |||||||+|||||||+||||+|.||++|
T Consensus 160 rv~Rvsp~~s~~rrhTsfa~V~v~P~~~-~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~~R 238 (326)
T PRK06746 160 RLVRISPFDSSGRRHTSFVSCEVVPEFN-DEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSER 238 (326)
T ss_pred EEEecCCCCCCCCeEeeEEEEEEecCcC-CccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECCCC
Confidence 999 9999999999999 9999999973 3588999999999999 9999 9999999999999999999999999999
Q ss_pred cC
Q 026460 237 IR 238 (238)
Q Consensus 237 s~ 238 (238)
|.
T Consensus 239 SQ 240 (326)
T PRK06746 239 SQ 240 (326)
T ss_pred CH
Confidence 94
No 3
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=2.8e-77 Score=544.80 Aligned_cols=233 Identities=28% Similarity=0.492 Sum_probs=225.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll~ 81 (238)
|++|+||+||+++++++++++.|+.+++.|+++....++++++.+|+++ .|++|+++|.+++..+++.++++++.+||
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~--~d~e~~~~a~~e~~~l~~~l~~~e~~~l~ 78 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE--EDDEMKKEIISEVKNIKEEIDRFKIETLL 78 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999864 37889999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccc
Q 026460 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (238)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvh 161 (238)
++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||
T Consensus 79 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvH 158 (325)
T PRK05589 79 SGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIH 158 (325)
T ss_pred CCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccc
Q 026460 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 162 r~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eR 236 (238)
||| +|||+++|||||| |+|+|+|.+. +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|.||++|
T Consensus 159 rv~r~s~~~~~~rr~ts~a~V~VlP~~~-~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~eR 237 (325)
T PRK05589 159 RLVRISPFNANGKRQTSFASVEVLPELT-DDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNER 237 (325)
T ss_pred EEEEcCCCCCCCCeEeeeEEEEEecCcC-ccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECCcc
Confidence 999 9999999999999 9999999983 3467899999999999 8999 9999999999999999999999999999
Q ss_pred c
Q 026460 237 I 237 (238)
Q Consensus 237 s 237 (238)
|
T Consensus 238 S 238 (325)
T PRK05589 238 S 238 (325)
T ss_pred C
Confidence 8
No 4
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3e-76 Score=539.79 Aligned_cols=235 Identities=25% Similarity=0.426 Sum_probs=226.5
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll~ 81 (238)
+++|+||+|++++++++++++.|+.+++.|+++....++++.+.+|+++ +.|++|+++|..++..+.+.++++++..||
T Consensus 3 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~-e~D~el~~~a~~e~~~l~~~l~~~el~~lL 81 (339)
T PRK07342 3 AEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEE-EGDKSIVEDAEKTIRDLKDEIDRRQIDALL 81 (339)
T ss_pred ccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999999999999999999875 359999999999999999999999988889
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccc
Q 026460 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (238)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvh 161 (238)
.+|+|.++|+|||+||+||.||++||++||+||.+||+++||++++++..+++.+|||+|+|.|+|++||++|++|+|||
T Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~GvH 161 (339)
T PRK07342 82 SGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVH 161 (339)
T ss_pred CCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccc
Q 026460 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 162 r~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eR 236 (238)
||| +|||+++|||||| |+|+|+|.+. +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|.||++|
T Consensus 162 rv~rvsp~~~~~rrhTs~a~V~VlP~~~-~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~~eR 240 (339)
T PRK07342 162 RLVRISPYDSNARRHTSFASIWVYPVID-DNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQER 240 (339)
T ss_pred EEEecCCCCCCCCeEeEEEEEEEEcCCC-cccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEECCcc
Confidence 999 9999999999999 9999999983 3467899999999999 9999 9999999999999999999999999999
Q ss_pred cC
Q 026460 237 IR 238 (238)
Q Consensus 237 s~ 238 (238)
|.
T Consensus 241 SQ 242 (339)
T PRK07342 241 SQ 242 (339)
T ss_pred cH
Confidence 84
No 5
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=7.6e-76 Score=543.09 Aligned_cols=235 Identities=30% Similarity=0.470 Sum_probs=227.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll~ 81 (238)
|++|+||+|++++++++++++.|..+++.|+++....++++++.+|+++ +.|++|+++|.+++..+.+.++++++..||
T Consensus 39 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~-e~D~e~~~~a~~e~~~l~~~l~~le~~~ll 117 (364)
T TIGR00020 39 MEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVE-EDDEETFNELDAELKALEKKLAELELRTML 117 (364)
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999864 469999999999999999999999988899
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccc
Q 026460 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (238)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvh 161 (238)
++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||
T Consensus 118 ~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvH 197 (364)
T TIGR00020 118 SGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVH 197 (364)
T ss_pred CCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccc
Q 026460 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 162 r~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eR 236 (238)
||| +|||+++|||||| |+|+|+|.+.+ ++++.|+++||+|+| |||| |||||||+|||||||+||||+|.||++|
T Consensus 198 rv~rvs~~~~~~rrhts~a~V~vlP~~~~-~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~saVri~H~ptgi~v~~q~~R 276 (364)
T TIGR00020 198 RLVRISPFDANGRRHTSFASVFVMPEVDD-DIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDR 276 (364)
T ss_pred EEEecCCCCCCCCeEeeeEEEEEecCCCc-ccceecccccEEEEEeeCCCCCCccccccceEEEEEECCCcEEEEECCcc
Confidence 999 9999999999999 99999999843 578999999999999 8999 9999999999999999999999999999
Q ss_pred cC
Q 026460 237 IR 238 (238)
Q Consensus 237 s~ 238 (238)
|.
T Consensus 277 SQ 278 (364)
T TIGR00020 277 SQ 278 (364)
T ss_pred CH
Confidence 83
No 6
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=5.5e-75 Score=538.22 Aligned_cols=236 Identities=31% Similarity=0.488 Sum_probs=226.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026460 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80 (238)
Q Consensus 1 ~~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll 80 (238)
+|++|+||+|++++++++++++.|..+++.|++++...++++++.+|+++ +.|++|+++|.+++..+.+.++++++..|
T Consensus 38 ~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~-e~D~el~~~a~~e~~~l~~~l~~le~~~l 116 (367)
T PRK00578 38 EAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEE-EDDEETLAEAEAELKALEKKLAALELERL 116 (367)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999865 35999999999999999999999998889
Q ss_pred CCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecccccccccccccc
Q 026460 81 LRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGA 160 (238)
Q Consensus 81 ~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gv 160 (238)
|++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+||
T Consensus 117 l~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~~~i~G~~a~~~lk~E~Gv 196 (367)
T PRK00578 117 LSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGV 196 (367)
T ss_pred cCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEEEEEeccCHHHHHhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeecc
Q 026460 161 HCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTL 235 (238)
Q Consensus 161 hr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~e 235 (238)
|||| +|||+++|||||| |+|+|+|.+. +..++.|+++||+|+| |||| |||||||+|||||||+||||+|.||++
T Consensus 197 Hrvqrvs~~~~~~r~hts~~~V~vlP~~~-~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~ 275 (367)
T PRK00578 197 HRLVRISPFDSAGRRHTSFASVEVYPEVD-DTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNE 275 (367)
T ss_pred EEEEecCCCCCCCceecceeeEEecCCCC-CccccccChhhEEEEEeeCCCCCCCcccceeeEEEEEECCCcEEEEECCC
Confidence 9999 9999999999999 9999999983 3457899999999999 8999 999999999999999999999999999
Q ss_pred ccC
Q 026460 236 QIR 238 (238)
Q Consensus 236 Rs~ 238 (238)
||.
T Consensus 276 RSQ 278 (367)
T PRK00578 276 RSQ 278 (367)
T ss_pred CCH
Confidence 983
No 7
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=5.1e-74 Score=529.89 Aligned_cols=234 Identities=22% Similarity=0.313 Sum_probs=223.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHh--
Q 026460 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS-- 78 (238)
Q Consensus 1 ~~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~-- 78 (238)
++++|+||+|++++++++++++.|..+++.|+++.....++.++.+|+++ .|++|+++|.+++..+...+++++..
T Consensus 22 ~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~a~~e~~~l~~~~~~~e~~l~ 99 (360)
T TIGR00019 22 LLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREMAKEELEELEEKIEELEEQLK 99 (360)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999864 59999999999999999998887743
Q ss_pred --hcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecccccccccc
Q 026460 79 --KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (238)
Q Consensus 79 --ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~ 156 (238)
+||++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++
T Consensus 100 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~ 179 (360)
T TIGR00019 100 VLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKF 179 (360)
T ss_pred HHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcceEEEEEEecccHHHHHhh
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEE
Q 026460 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVR 231 (238)
Q Consensus 157 e~Gvhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~ 231 (238)
|.|||||| +|||++++|+||| |+|+|+|.+. ++++.|+++||+|+| |||| |||||||+|||||||+||||+|.
T Consensus 180 E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~--~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~SaVrl~h~ptgi~V~ 257 (360)
T TIGR00019 180 ESGVHRVQRVPVTESQGRIHTSAATVAVMPELE--EVEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 257 (360)
T ss_pred cCeeEEEECCCCCCCCCCeecceeEEEEEcCCC--ccccccCcccEEEEEEECCCCCCCCcCceeeeEEEEECCCcEEEE
Confidence 99999999 9999999999999 9999999984 367899999999999 8999 99999999999999999999999
Q ss_pred eeccccC
Q 026460 232 GTTLQIR 238 (238)
Q Consensus 232 ~q~eRs~ 238 (238)
||++||.
T Consensus 258 ~~~eRSQ 264 (360)
T TIGR00019 258 CQDERSQ 264 (360)
T ss_pred ECCccCH
Confidence 9999984
No 8
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=6.8e-73 Score=522.63 Aligned_cols=235 Identities=22% Similarity=0.317 Sum_probs=223.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH----
Q 026460 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE---- 76 (238)
Q Consensus 1 ~~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le---- 76 (238)
+|++|+||+||+++++++++++.|+.+++.|+++....+++.++.+|+.+ ++|++|++++.+++..+...+++++
T Consensus 21 ~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~-e~D~~~~~~~~~e~~~l~~~l~~~e~~l~ 99 (359)
T PRK00591 21 LLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE-ESDPEMREMAKEELKELEERLEELEEELK 99 (359)
T ss_pred HhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999864 4599999999999999998888776
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecccccccccc
Q 026460 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (238)
Q Consensus 77 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~ 156 (238)
..+||++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++..+++.+|||+|++.|+|++||++|++
T Consensus 100 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~Lk~ 179 (359)
T PRK00591 100 ILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKF 179 (359)
T ss_pred HHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCceeEEEEEEecccHHHHHhh
Confidence 33689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEE
Q 026460 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVR 231 (238)
Q Consensus 157 e~Gvhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~ 231 (238)
|+|||||| +||+++++|+||| |+|+|+|.+. ++++.|+++||+|+| |||| |||||||+|||||||+||||+|.
T Consensus 180 E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~--~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptGi~v~ 257 (359)
T PRK00591 180 ESGVHRVQRVPATESQGRIHTSAATVAVLPEAE--EVEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVE 257 (359)
T ss_pred cCeeEEEEeeCCCCCCCceecceEEEEEEcCCC--ccccccCcccEEEEEEECCCCCCCCccceeeeEEEEECCCcEEEE
Confidence 99999999 9999999999999 9999999984 368899999999999 8999 99999999999999999999999
Q ss_pred eeccccC
Q 026460 232 GTTLQIR 238 (238)
Q Consensus 232 ~q~eRs~ 238 (238)
||++||.
T Consensus 258 ~~~eRSQ 264 (359)
T PRK00591 258 CQDERSQ 264 (359)
T ss_pred ECCcCCH
Confidence 9999984
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=5.5e-71 Score=499.73 Aligned_cols=213 Identities=29% Similarity=0.382 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCchH
Q 026460 24 SLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICP 103 (238)
Q Consensus 24 L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll~~~~~D~~~~~leI~aG~GG~Ea 103 (238)
|+..++.|+.+...++|++.|++|+++ +.|++|++++.+++..++..++++++..||++|+|.++|+|||+||+||+||
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~-~~d~e~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~Ea 80 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAES-EQDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEA 80 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHHH
Confidence 678899999999999999999999976 4699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccceee-cCCCCCCCCccce-eEEE
Q 026460 104 EIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPNGSFPHEATL-ACVD 181 (238)
Q Consensus 104 ~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvhr~~-~~~~~~~~r~~ts-~~V~ 181 (238)
++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||||| +|||+++|||||| |+|+
T Consensus 81 ~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV~ 160 (313)
T PRK08787 81 QDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVF 160 (313)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999 9999
Q ss_pred eeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccccC
Q 026460 182 VVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQIR 238 (238)
Q Consensus 182 v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eRs~ 238 (238)
|+|.+. +.+++.|+++||+|+| |||| |||||||+|||||||+||||+|.||++||.
T Consensus 161 V~P~~~-~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ 219 (313)
T PRK08787 161 VSPEVD-DNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQ 219 (313)
T ss_pred EecCcC-cccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccH
Confidence 999983 4578999999999999 8999 999999999999999999999999999983
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-67 Score=480.25 Aligned_cols=226 Identities=31% Similarity=0.469 Sum_probs=197.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHH----HHHHH
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLL----DQYEM 77 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l----~~le~ 77 (238)
+++.++|+|+.+. ..++..+.+....+.++..+..|..+ .+|++|.++|.+|+..+.+++ .+|+.
T Consensus 57 ~~~~~~~~~~~~l----------~~~~~~l~~~~~~~~~~~~lk~l~~~-~e~e~~~~~a~~E~~~~~~~i~~~~~~l~~ 125 (386)
T KOG2726|consen 57 SNDSDLWDDPAEL----------DEVLNALSDRMKLVRELKSLKSLIKE-GEDEDMDELAEEEAEEISKEIERSLHELEL 125 (386)
T ss_pred hchhhhhhhhHHH----------HHHHHHHHHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888887632 23333333333334444334444444 458999999999988876554 56789
Q ss_pred hhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccc
Q 026460 78 SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (238)
Q Consensus 78 ~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e 157 (238)
.+||+++||.++|+|||+||+||+||++|+.+|++||.+||+++||++++++..+++.+||++|++.|+|.+||++|++|
T Consensus 126 ~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~l~~E 205 (386)
T KOG2726|consen 126 SLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGYLKFE 205 (386)
T ss_pred HhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEe
Q 026460 158 TGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRG 232 (238)
Q Consensus 158 ~Gvhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~ 232 (238)
.|||||| +|+++..||+||| ++|.|+|.+..+++++.++++||+|+| +||| |||||||+|||||+||||||+|+|
T Consensus 206 ~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTGIvv~c 285 (386)
T KOG2726|consen 206 AGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTGIVVEC 285 (386)
T ss_pred CcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeecCceEEEe
Confidence 9999999 9999999999999 999999999767799999999999999 8999 999999999999999999999999
Q ss_pred eccccC
Q 026460 233 TTLQIR 238 (238)
Q Consensus 233 q~eRs~ 238 (238)
|+|||+
T Consensus 286 q~eRSq 291 (386)
T KOG2726|consen 286 QEERSQ 291 (386)
T ss_pred ecHHhH
Confidence 999995
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-59 Score=409.26 Aligned_cols=148 Identities=36% Similarity=0.569 Sum_probs=144.8
Q ss_pred ceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccceee-cCCC
Q 026460 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLI-NFPN 168 (238)
Q Consensus 90 ~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvhr~~-~~~~ 168 (238)
|+|+|+||+||+|||+||.||||||+|||+++||++++++..+|+.+|+||++|.|+|++||++|+.|.|||||+ +|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccccC
Q 026460 169 GSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQIR 238 (238)
Q Consensus 169 ~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eRs~ 238 (238)
++.|||||| ++|.|+|.++ +++++.|+++||+|+| |||| |||||||+|||||||+||||+|.||.+||+
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~-~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq 153 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELD-ISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQ 153 (239)
T ss_pred CcCcccccceeeeeecCCCC-cccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHH
Confidence 999999999 9999999985 6788999999999999 9999 999999999999999999999999999985
No 12
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=6.4e-55 Score=374.73 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=137.4
Q ss_pred ceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCC-CceeEEEEEEeccccccccccccccceee-cCC
Q 026460 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLI-NFP 167 (238)
Q Consensus 90 ~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~-~g~~~~~~~i~g~~a~~~l~~e~Gvhr~~-~~~ 167 (238)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||+|+|.|+|+++|++|+.|.|+|+|+ +||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6899999999999999999999999999999999999999999987 56999999999999999999999999999 999
Q ss_pred CCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccccC
Q 026460 168 NGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQIR 238 (238)
Q Consensus 168 ~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eRs~ 238 (238)
++++++|||| ++|+|+|.. +.|+++||+|+| +||| |||||||+|||||+|+||||+|.||++||.
T Consensus 82 ~~~~~~R~~s~~~V~v~~~~------~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ 150 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSAD------EEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQ 150 (200)
T ss_pred CCCCCCceEEEEEEEEeCCc------CccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCH
Confidence 9999999999 999999763 578999999999 9999 999999999999999999999999999984
No 13
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=2.3e-54 Score=371.30 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=136.9
Q ss_pred ceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCC-CceeEEEEEEeccccccccccccccceee-cCC
Q 026460 90 ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKN-GGVKSATIEFEFEYAFGYLSGETGAHCLI-NFP 167 (238)
Q Consensus 90 ~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~-~g~~~~~~~i~g~~a~~~l~~e~Gvhr~~-~~~ 167 (238)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||+|+|.|+|++||++|+.|.|+|+|+ .||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999987 57999999999999999999999999999 999
Q ss_pred CCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccccC
Q 026460 168 NGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQIR 238 (238)
Q Consensus 168 ~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eRs~ 238 (238)
++++++|||| |+|.|+|. ++.|+++||+|+| |||| |||||||+|||||+|+||||+|.||++||.
T Consensus 81 ~r~~~~R~ts~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ 149 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA------SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQ 149 (200)
T ss_pred CCCCCCeeEEEEEEEEecC------ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCH
Confidence 9999999999 99999984 2568999999999 9999 999999999999999999999999999984
No 14
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=100.00 E-value=1.2e-33 Score=224.12 Aligned_cols=107 Identities=34% Similarity=0.478 Sum_probs=98.4
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEE
Q 026460 51 EAIDYGLFKRAYRASLDVSKLLDQYEMS----KLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGR 126 (238)
Q Consensus 51 ~~~D~e~~~~a~~e~~~l~~~l~~le~~----ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~ 126 (238)
++.|+||++++.+++..+.+.+++++.. ++|++++|..+|+|||+||+||+||++||++|++||++||+++||+++
T Consensus 5 ~~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~~ 84 (115)
T PF03462_consen 5 EEEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKVE 84 (115)
T ss_dssp CCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4679999999999999999999887655 889999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCceeEEEEEEeccccccccccc
Q 026460 127 VVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (238)
Q Consensus 127 ~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e 157 (238)
+++..+++.+|+|+|++.|+|++||++||+|
T Consensus 85 ~l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 85 VLDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EEecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 9999999999999999999999999999997
No 15
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=99.76 E-value=3.5e-19 Score=140.99 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=45.4
Q ss_pred CCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccccC
Q 026460 190 SPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQIR 238 (238)
Q Consensus 190 ~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eRs~ 238 (238)
..++.|+++||+|++ |||| |||||||+|||||+|+||||+|.||++||.
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq 55 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQ 55 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSH
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCH
Confidence 457899999999999 9999 999999999999999999999999999984
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.43 E-value=6.5e-14 Score=114.60 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=42.9
Q ss_pred CCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEe------ec---------------C--e-eEEEeeccccC
Q 026460 191 PDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQH------IP---------------T--G-IAVRGTTLQIR 238 (238)
Q Consensus 191 ~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH------~P---------------T--G-i~V~~q~eRs~ 238 (238)
.++.|+++||++.| |||| |||||||+|+|+|+| +| | | |+|.||++||.
T Consensus 6 ~~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ 80 (138)
T PRK09256 6 RRLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQ 80 (138)
T ss_pred ccCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCH
Confidence 35788999999999 9999 999999999999996 77 3 5 99999999984
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00039 Score=58.34 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=23.7
Q ss_pred cCCCCCeEEec--CCCC-CCcccCCCCeeEEEe
Q 026460 194 QISDEDLLFSS--PSLP-GERQSIAKPAACIQH 223 (238)
Q Consensus 194 ~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH 223 (238)
.|..+.|.|.+ |||| ||||||++|-|=|+-
T Consensus 36 ~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf 68 (172)
T KOG3429|consen 36 KIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRF 68 (172)
T ss_pred CCchhheEEEEeecCCCCCcccccccceEEEEE
Confidence 34456677777 9999 999999999887753
No 18
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=78.84 E-value=13 Score=35.02 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ---LAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 12 ~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~e---l~~~~~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
.+..+-..+|.++...+..|++....+++++.|+. ..++.+.-++.+.+++..+..|+++|..|-
T Consensus 36 ~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 36 RKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666688999999999999999999999999987 444433345667888888999998887653
No 19
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=73.16 E-value=10 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecc
Q 026460 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFE 148 (238)
Q Consensus 111 ~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~ 148 (238)
+........++||+++-+...+.+..|+..+++.+.|+
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 34445666799999999999998889999999999993
No 20
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=64 Score=26.25 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------CHHHHHHHHHHHHHHH
Q 026460 7 LWDDPTKSNEVLVK---LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAI--------------DYGLFKRAYRASLDVS 69 (238)
Q Consensus 7 ~w~D~~ka~~l~ke---l~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~--------------D~e~~~~a~~e~~~l~ 69 (238)
.|.|+.+..+-++- ...|+.-+..-+.....++|+..=++|+.+++. -+.+..++++..+++.
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~ 94 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLE 94 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHH
Confidence 47777776665554 444555555555555566666666666643210 1234455555555666
Q ss_pred HHHHHHH
Q 026460 70 KLLDQYE 76 (238)
Q Consensus 70 ~~l~~le 76 (238)
+.++.++
T Consensus 95 k~i~~le 101 (131)
T KOG1760|consen 95 KEIEELE 101 (131)
T ss_pred HHHHHHH
Confidence 6665554
No 21
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=65.94 E-value=20 Score=26.47 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccc
Q 026460 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY 149 (238)
Q Consensus 111 ~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~ 149 (238)
+......+.++||+++-+...+.+..|+...++.+.|+.
T Consensus 16 L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 16 LLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 444456667899999999999988899999999988753
No 22
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=63.42 E-value=17 Score=26.68 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccc
Q 026460 112 NMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAF 151 (238)
Q Consensus 112 ~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~ 151 (238)
......+.++||+++-++..+.+..++...++.+.++...
T Consensus 18 ~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i 57 (76)
T PRK11152 18 ERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPI 57 (76)
T ss_pred HHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchH
Confidence 3445666789999999999998888999999999765443
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.15 E-value=1e+02 Score=26.29 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026460 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK 79 (238)
Q Consensus 7 ~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~l 79 (238)
+|.=|..+.. +....+..+.....+++..+.+++.-++.....-.+.+-+....++++.|++++.+|+..+
T Consensus 56 YWsFps~~~~--~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 56 YWSFPSQAKQ--KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred EEecChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544443332 2233344444444555566666665555443333455677778888888887777765443
No 24
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=58.84 E-value=31 Score=25.71 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 026460 30 ALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM 77 (238)
Q Consensus 30 ~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~ 77 (238)
.+++|+.+++|++.|++.+. -+-.+..+..++..++.+|..++.
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~----R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAK----RKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999998754 456788888899999988887764
No 25
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=57.03 E-value=32 Score=25.94 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=30.3
Q ss_pred HHHHHHHcCCeEEEEeccccCCCceeEEEEEEe-ccc
Q 026460 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFE-FEY 149 (238)
Q Consensus 114 y~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~-g~~ 149 (238)
....+.++||+++-+...+.+..|+...++.+. |+.
T Consensus 19 it~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 19 ITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred HHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 344456799999999999999999999999997 753
No 26
>PRK11020 hypothetical protein; Provisional
Probab=52.82 E-value=90 Score=25.00 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=20.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 52 AIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 52 ~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
..|.++......|++.+.++|..+.
T Consensus 27 rgd~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 27 RGDAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999998887664
No 27
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.42 E-value=83 Score=28.33 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHH
Q 026460 6 NLWDDPTKSNEVLVKLADSLKVVN-ALKDLRYKAEEAKLIAQ 46 (238)
Q Consensus 6 ~~w~D~~ka~~l~kel~~L~~~~~-~~~~l~~~~~e~~~l~e 46 (238)
.|+||++ +-.+.+.....++.++ .|++|+..+.+.....+
T Consensus 144 gFFDdke-~d~~vr~~~e~k~~~d~Ey~rfqkeI~~~~tesd 184 (264)
T KOG3032|consen 144 GFFDDKE-ADLLVRGIKEVKPDIDDEYKRFQKEIQDDLTESD 184 (264)
T ss_pred cccCchh-hhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6887776 5555566555555544 59999998887665554
No 28
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=49.35 E-value=59 Score=26.55 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHHHHHHHcCC-eEEEEeccccCCCceeEEEEEEe
Q 026460 101 ICPEIWAEQLLNMYVRWADKEGY-RGRVVDKCCCKNGGVKSATIEFE 146 (238)
Q Consensus 101 ~Ea~~fa~~L~~my~~~a~~~g~-~~~~~~~~~~~~~g~~~~~~~i~ 146 (238)
.++..+...++..|..+.+.-|+ .+++.....++.+++.+.+..++
T Consensus 121 ~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e 167 (173)
T PF00587_consen 121 EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIE 167 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHH
Confidence 88999999999999999999999 99999999988877766665554
No 29
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=46.24 E-value=1.2e+02 Score=26.69 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCceEEEec
Q 026460 54 DYGLFKRAYRASLDVSKLLDQYEMSK-LLRGPNDVEGASVTIKA 96 (238)
Q Consensus 54 D~e~~~~a~~e~~~l~~~l~~le~~l-l~~~~~D~~~~~leI~a 96 (238)
+.+-.-.++.++..++.+|+.++..+ .+.+..+...+-|.+.+
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~~ 203 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLYE 203 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEEe
Confidence 33334445555666666666655332 33444444445555544
No 30
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.30 E-value=2.1e+02 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026460 17 VLVKLADSLKVVNALKDLRYKAEEAK 42 (238)
Q Consensus 17 l~kel~~L~~~~~~~~~l~~~~~e~~ 42 (238)
+.+-.+.|...++.++.....+.|++
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~ 38 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYR 38 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 31
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=42.19 E-value=30 Score=32.91 Aligned_cols=164 Identities=15% Similarity=0.079 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHH-HHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH-------
Q 026460 8 WDDPTKSNEVLVKLADSLKVVNA---LKDLRYKAEEA-KLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE------- 76 (238)
Q Consensus 8 w~D~~ka~~l~kel~~L~~~~~~---~~~l~~~~~e~-~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le------- 76 (238)
|.+|-+.....++...+...... |+.+.-+..+. ++|..+-.+.-.|+.+.+...+.+.++...++=|+
T Consensus 17 ~~~pvn~~~~~~~f~~~p~~~~p~f~yr~L~~d~~~~k~~l~~l~~e~i~d~~l~~l~r~~~~e~~~~i~mL~~~Gt~~F 96 (366)
T TIGR02421 17 WVTPTNEPFLQSRFRDNPFSYQPEFQYRPLPFDVAETKRELYSLPIDIIRDPPLGQLYREKQDEYDLVIDLLESIGTATF 96 (366)
T ss_pred CCchhhHHHHHHHHhhCCCCCCCccccCCCCCCHHHHHHHHHhhHHhhccChhHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 77777777776666665433221 11111111111 12222211222367777777776666665554332
Q ss_pred --H-hhcC---CCCCC-CCCceEEEec-----CCC-CchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccC-CCceeEEE
Q 026460 77 --M-SKLL---RGPND-VEGASVTIKA-----GSN-GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCK-NGGVKSAT 142 (238)
Q Consensus 77 --~-~ll~---~~~~D-~~~~~leI~a-----G~G-G~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~-~~g~~~~~ 142 (238)
. ..+. +++.. ....+++..+ -.+ ...|..++..+-++...|.....+++++-+.-.+. ..|-+ +
T Consensus 97 ~~~S~~lYG~p~~~~~~~a~~il~~~~~~~~~~~~~~~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~~--~ 174 (366)
T TIGR02421 97 LYNSLRLYGAPSDALIGNAPFLLELDARAMEEEEQAPVSATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSGD--K 174 (366)
T ss_pred HHHHHHHcCCCCccccccchhHHhhccccccccccCCcCHHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccCC--e
Confidence 1 1232 22221 1223444311 011 35566777777777777776655566544432222 23323 4
Q ss_pred EEEecc------ccccccccccccceeecCCCCCCCCccce
Q 026460 143 IEFEFE------YAFGYLSGETGAHCLINFPNGSFPHEATL 177 (238)
Q Consensus 143 ~~i~g~------~a~~~l~~e~Gvhr~~~~~~~~~~r~~ts 177 (238)
|.|.-. .+.+.+.+|.|||-+- -=+|+.|.|
T Consensus 175 l~i~~~a~fs~~~l~~L~~HEigvH~~T----~~Ng~~Qp~ 211 (366)
T TIGR02421 175 LKLNSDAMFSERDLEALIHHEIGVHLLT----TLNGRAQPL 211 (366)
T ss_pred EEECCCCCcCHHHHHHHHHHhHHhhhhh----ccccccCch
Confidence 666544 4667889999999876 224666666
No 32
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=41.06 E-value=47 Score=25.07 Aligned_cols=52 Identities=12% Similarity=0.244 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecccccccccc
Q 026460 105 IWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (238)
Q Consensus 105 ~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~ 156 (238)
.|.-.++..-.+--+.+||.+.-++.++.-.+|..++.+.+.|+-++..|..
T Consensus 11 r~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~ 62 (86)
T COG3978 11 RFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTS 62 (86)
T ss_pred cCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCChHHHHH
Confidence 3555666667788889999999999888877899999999999988777654
No 33
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.55 E-value=1.1e+02 Score=30.81 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.5
Q ss_pred CchHHHHHHHHHHHHHHH
Q 026460 100 GICPEIWAEQLLNMYVRW 117 (238)
Q Consensus 100 G~Ea~~fa~~L~~my~~~ 117 (238)
|.+...|+..++..|.+.
T Consensus 287 g~~i~~~~~~~~~~y~~~ 304 (555)
T TIGR03545 287 GPEIRKYLQKFLKYYDQA 304 (555)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 788999999999888883
No 34
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=39.49 E-value=22 Score=29.06 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.4
Q ss_pred CCCCccce-eEEEeeeC
Q 026460 170 SFPHEATL-ACVDVVPL 185 (238)
Q Consensus 170 ~~~r~~ts-~~V~v~P~ 185 (238)
..|||+|+ |.|.+.|.
T Consensus 8 ~tGkRK~AvArv~l~~g 24 (130)
T COG0103 8 TTGKRKSAVARVRLVPG 24 (130)
T ss_pred eeccccceEEEEEEEcC
Confidence 46999999 99988776
No 35
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=39.19 E-value=58 Score=25.17 Aligned_cols=34 Identities=3% Similarity=-0.086 Sum_probs=28.6
Q ss_pred HHHHHcCCeEEEEeccccCCCceeEEEEEEeccc
Q 026460 116 RWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY 149 (238)
Q Consensus 116 ~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~ 149 (238)
..+.++||+++-+...+.+..|+...++.+.++.
T Consensus 27 glFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~ 60 (96)
T PRK08178 27 GLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQ 60 (96)
T ss_pred HHHhcCCcCeeeEEEeecCCCCceEEEEEEcCch
Confidence 3445799999999999998899999999988654
No 36
>PF08399 VWA_N: VWA N-terminal; InterPro: IPR013608 This domain is found at the N terminus of proteins containing von Willebrand factor type A (VWA, IPR002035 from INTERPRO) and Cache (IPR004010 from INTERPRO) domains. It has been found in vertebrates, Drosophila melanogaster (Fruit fly) and Caenorhabditis elegans but has not yet been identified in other eukaryotes. It is probably involved in the function of some voltage-dependent calcium channel subunits [].
Probab=37.55 E-value=18 Score=29.09 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.7
Q ss_pred CCcccCCCCeeEEEeecCeeE
Q 026460 209 GERQSIAKPAACIQHIPTGIA 229 (238)
Q Consensus 209 GQ~VNkteSAVRitH~PTGi~ 229 (238)
+..||++.||| |+||+|-
T Consensus 56 ~i~Vn~~~S~V---hiPt~Vy 73 (123)
T PF08399_consen 56 NIPVNTSQSAV---HIPTNVY 73 (123)
T ss_pred CcccccccceE---EccCCcc
Confidence 34999999985 8899975
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.37 E-value=2.3e+02 Score=30.62 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCHHHHHH----HHHHHHHHHHHHHHHHHhh-cCCCC
Q 026460 34 LRYKAEEAKLIAQLAEMEAIDYGLFKR----AYRASLDVSKLLDQYEMSK-LLRGP 84 (238)
Q Consensus 34 l~~~~~e~~~l~el~~~~~~D~e~~~~----a~~e~~~l~~~l~~le~~l-l~~~~ 84 (238)
+...+.|+.+-++|+.. |+||.++ ++.|++.+++.+++|+..+ +++.+
T Consensus 302 ~k~emad~ad~iEmaTl---dKEmAEERaesLQ~eve~lkEr~deletdlEILKaE 354 (1243)
T KOG0971|consen 302 YKEEMADTADAIEMATL---DKEMAEERAESLQQEVEALKERVDELETDLEILKAE 354 (1243)
T ss_pred HHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555432 5555543 3444555667777776333 44433
No 38
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.31 E-value=3.9e+02 Score=25.51 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=24.5
Q ss_pred ecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccc
Q 026460 95 KAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCC 132 (238)
Q Consensus 95 ~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~ 132 (238)
..|+|-+ -.++.|...|..-+..+|.++-++...+
T Consensus 182 ptGvGKT---TT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 182 PTGVGKT---TTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CCCCCHH---HHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 5577766 4456666667665556789999988765
No 39
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.21 E-value=3.1e+02 Score=25.38 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCHHH--------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceE
Q 026460 22 ADSLKVVNALKDLRYKAEEAKL-IAQLAEMEAIDYGL--------FKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASV 92 (238)
Q Consensus 22 ~~L~~~~~~~~~l~~~~~e~~~-l~el~~~~~~D~e~--------~~~a~~e~~~l~~~l~~le~~ll~~~~~D~~~~~l 92 (238)
+.|+.-.+.+.+-...++|++. |..| .++=..+|. +++|..||+.|++.++.+...|..+|+--. ..|+
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RM-rEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQ-KYFv 152 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARM-REDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQ-KYFV 152 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH-HHHh
Confidence 4566777777777777777764 3332 221112222 456667777777766666655555544222 2345
Q ss_pred EEec
Q 026460 93 TIKA 96 (238)
Q Consensus 93 eI~a 96 (238)
.|..
T Consensus 153 DINi 156 (305)
T PF15290_consen 153 DINI 156 (305)
T ss_pred hhhh
Confidence 5544
No 40
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=35.50 E-value=32 Score=31.23 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=14.4
Q ss_pred CCCCccce-eEEEeeeCC
Q 026460 170 SFPHEATL-ACVDVVPLF 186 (238)
Q Consensus 170 ~~~r~~ts-~~V~v~P~~ 186 (238)
..|||+++ |.|.|.|-.
T Consensus 153 ~~g~rK~a~A~V~v~~Gt 170 (275)
T KOG1697|consen 153 AVGRRKCARATVKVQPGT 170 (275)
T ss_pred eccceecceeEEEEecCc
Confidence 45899999 999998874
No 41
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.69 E-value=62 Score=22.62 Aligned_cols=36 Identities=33% Similarity=0.403 Sum_probs=24.2
Q ss_pred HcCCeEEEEeccccCCCc-eeEEEEEEeccccccccccccccceee
Q 026460 120 KEGYRGRVVDKCCCKNGG-VKSATIEFEFEYAFGYLSGETGAHCLI 164 (238)
Q Consensus 120 ~~g~~~~~~~~~~~~~~g-~~~~~~~i~g~~a~~~l~~e~Gvhr~~ 164 (238)
++|+++.++|....- +| .++.. +.| ...+.|.|.+.
T Consensus 17 ~~g~~v~v~E~~~~~-GG~~~~~~--~~g------~~~d~g~~~~~ 53 (68)
T PF13450_consen 17 KAGYRVTVFEKNDRL-GGRARSFR--IPG------YRFDLGAHYFF 53 (68)
T ss_dssp HTTSEEEEEESSSSS-SGGGCEEE--ETT------EEEETSS-SEE
T ss_pred HCCCcEEEEecCccc-CcceeEEE--ECC------EEEeeccEEEe
Confidence 459999999987653 34 44443 333 67889988887
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.50 E-value=2.6e+02 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHH
Q 026460 10 DPTKSNEVLVKLADSLKVVNALKD 33 (238)
Q Consensus 10 D~~ka~~l~kel~~L~~~~~~~~~ 33 (238)
+++....+..++..|...+..++.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~ 93 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKK 93 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888877777766553
No 43
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.66 E-value=1.2e+02 Score=26.71 Aligned_cols=20 Identities=45% Similarity=0.684 Sum_probs=16.9
Q ss_pred CCcCCCCHHHHHHHHHHHHh
Q 026460 4 NYNLWDDPTKSNEVLVKLAD 23 (238)
Q Consensus 4 ~p~~w~D~~ka~~l~kel~~ 23 (238)
||-+|-||.++..+.+.+.+
T Consensus 94 dPH~Wldp~n~~~~a~~I~~ 113 (264)
T cd01020 94 NPHLWYDPETMSKVANALAD 113 (264)
T ss_pred CCceecCHhHHHHHHHHHHH
Confidence 89999999999888776554
No 44
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.55 E-value=64 Score=27.36 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 026460 32 KDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGP 84 (238)
Q Consensus 32 ~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll~~~~ 84 (238)
++++.++..+-+=--|++. +-+.++.+..+.+.|++++.+|+..++..+.
T Consensus 3 eD~EsklN~AIERnalLE~---ELdEKE~L~~~~QRLkDE~RDLKqEl~V~ek 52 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLES---ELDEKENLREEVQRLKDELRDLKQELIVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333332 1245777888888888888888776665544
No 45
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.25 E-value=3.1e+02 Score=27.14 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHH
Q 026460 7 LWDDPTKSNEVLVKLADSLKVVNALK----DLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQ 74 (238)
Q Consensus 7 ~w~D~~ka~~l~kel~~L~~~~~~~~----~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~ 74 (238)
+--||.+...+..++..+......|. ++....++++.=++.++ ...+..+.+..++..+.+.+.+
T Consensus 296 l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~---~~~~~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 296 LEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD---DSDESLEALEEEVDKLEEELDK 364 (563)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHH
Confidence 33488888888888888887777665 33333333332222221 2334455555555555554443
No 46
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=32.05 E-value=1.5e+02 Score=27.93 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHHHHHHHHcC--CeEEEEeccccC-CCceeEEEEEEec------cccccccccccccceeecCCCCCC
Q 026460 101 ICPEIWAEQLLNMYVRWADKEG--YRGRVVDKCCCK-NGGVKSATIEFEF------EYAFGYLSGETGAHCLINFPNGSF 171 (238)
Q Consensus 101 ~Ea~~fa~~L~~my~~~a~~~g--~~~~~~~~~~~~-~~g~~~~~~~i~g------~~a~~~l~~e~Gvhr~~~~~~~~~ 171 (238)
.-|..++..+-++..+|....+ +++++-+...+. ..|-.. |.|.- ..+.+.+.+|.|||-+- -=+
T Consensus 109 ~~a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~~~--l~I~~~~~fs~~~l~~L~~HEigvH~lt----~~N 182 (349)
T PF08014_consen 109 LDAEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSGDR--LKINKNAMFSERDLEALLHHEIGVHLLT----TLN 182 (349)
T ss_pred CCHHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccCCe--eEEcCCCCcCHHHHHHHHHHhhhhhhcc----ccc
Confidence 3455677788888888877664 444444332222 223333 44443 24678899999999887 123
Q ss_pred CCccce
Q 026460 172 PHEATL 177 (238)
Q Consensus 172 ~r~~ts 177 (238)
|+.|.+
T Consensus 183 g~~QPl 188 (349)
T PF08014_consen 183 GRAQPL 188 (349)
T ss_pred cccCCc
Confidence 555554
No 47
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=31.88 E-value=3e+02 Score=27.28 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 026460 10 DPTKSNEVLVKLADSLKVVNALKDL----RYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (238)
Q Consensus 10 D~~ka~~l~kel~~L~~~~~~~~~l----~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~l 75 (238)
|+.+.++.++++- ..+..|++. ++..+++..+.++++....-.|+..+...--+.++++++.|
T Consensus 387 ~~~rlR~hQRkfL---~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~L 453 (489)
T KOG3684|consen 387 DQARLRKHQRKFL---QAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTL 453 (489)
T ss_pred chHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666532 222223322 22334445555555443223455544444444444444433
No 48
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=31.12 E-value=38 Score=24.47 Aligned_cols=21 Identities=24% Similarity=0.767 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeE
Q 026460 105 IWAEQLLNMYVRWADKEGYRG 125 (238)
Q Consensus 105 ~fa~~L~~my~~~a~~~g~~~ 125 (238)
.....|++.|..||+..|.+.
T Consensus 22 v~~~~lY~~Y~~wc~~ng~~~ 42 (86)
T PF03288_consen 22 VPSKDLYDAYKEWCEENGYKP 42 (86)
T ss_dssp -TTTBHHHHHHHHHHHTT-S-
T ss_pred ccHHHHHHHHHHHHHHhCCCc
Confidence 455889999999999999887
No 49
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=30.29 E-value=44 Score=26.05 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=13.3
Q ss_pred HHHHHHcCCeEEEEeccc
Q 026460 115 VRWADKEGYRGRVVDKCC 132 (238)
Q Consensus 115 ~~~a~~~g~~~~~~~~~~ 132 (238)
..||+++||.++|.+-..
T Consensus 62 i~yaer~G~~Y~V~~p~~ 79 (101)
T PF04800_consen 62 IAYAERNGWDYEVEEPKK 79 (101)
T ss_dssp HHHHHHCT-EEEEE-STT
T ss_pred HHHHHHcCCeEEEeCCCC
Confidence 489999999999986543
No 50
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.64 E-value=1.8e+02 Score=24.55 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=15.7
Q ss_pred CCcCCCCHHHHHHHHHHHH
Q 026460 4 NYNLWDDPTKSNEVLVKLA 22 (238)
Q Consensus 4 ~p~~w~D~~ka~~l~kel~ 22 (238)
||-+|-||.++..+.+.++
T Consensus 107 dPH~Wldp~~~~~~a~~I~ 125 (203)
T cd01145 107 NPHVWLDPNNAPALAKALA 125 (203)
T ss_pred CcCeecCHHHHHHHHHHHH
Confidence 8999999999987776644
No 51
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=29.45 E-value=1.6e+02 Score=26.07 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026460 26 KVVNALKDLRYKAEEAKLIAQ 46 (238)
Q Consensus 26 ~~~~~~~~l~~~~~e~~~l~e 46 (238)
.+++.++++...+++++.+++
T Consensus 236 ~i~~~l~~~~~~l~~~~~~l~ 256 (279)
T PRK07417 236 ALLRSLASYRQSLDQLEELIE 256 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666664
No 52
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=29.38 E-value=1.7e+02 Score=28.67 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=27.7
Q ss_pred CCCCceEEEecCCCCchHHH-HHH---H-HHHHHHHHHHHcCCeEEEEecccc
Q 026460 86 DVEGASVTIKAGSNGICPEI-WAE---Q-LLNMYVRWADKEGYRGRVVDKCCC 133 (238)
Q Consensus 86 D~~~~~leI~aG~GG~Ea~~-fa~---~-L~~my~~~a~~~g~~~~~~~~~~~ 133 (238)
.-.+|+.=..||+||=+|.. ++. + +-.....|. +-.+..++....
T Consensus 393 ~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~---~~~V~pL~v~~~ 442 (454)
T TIGR01219 393 SLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWS---SHNVLALDVREA 442 (454)
T ss_pred hcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHh---hCCEEEEecccc
Confidence 44667788899999988754 222 2 455666673 244555555544
No 53
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=28.94 E-value=77 Score=26.49 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=25.9
Q ss_pred CCCC-CCcccCCCCeeEEEeecCeeEEEeeccc
Q 026460 205 PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 205 ~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eR 236 (238)
..|. +..+-..+|-+||.|..||.-+.+++.+
T Consensus 126 ~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 126 STGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp SSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred cCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 3454 5677778999999999999998887754
No 54
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.85 E-value=1.6e+02 Score=26.45 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCCCC
Q 026460 56 GLFKRAYRASLDVSKLLDQYEM-SKLLRGPNDVE 88 (238)
Q Consensus 56 e~~~~a~~e~~~l~~~l~~le~-~ll~~~~~D~~ 88 (238)
+...-+..++...+.+++.+.. .-+++.++|+.
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ 119 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDS 119 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444555666666666655542 23455666643
No 55
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.76 E-value=34 Score=26.75 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=28.2
Q ss_pred HcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccceeecCCC
Q 026460 120 KEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPN 168 (238)
Q Consensus 120 ~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvhr~~~~~~ 168 (238)
.+||+--+...+-++ .+.+.|+.++|||. .| |-+.+||.
T Consensus 57 IkGwdegv~qmsvGe-----kakLti~pd~aYG~----~G-~p~~IppN 95 (108)
T KOG0544|consen 57 IKGWDEGVAQMSVGE-----KAKLTISPDYAYGP----RG-HPGGIPPN 95 (108)
T ss_pred eechhhcchhccccc-----cceeeeccccccCC----CC-CCCccCCC
Confidence 367777776666665 47899999999986 44 77776763
No 56
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.29 E-value=2.7e+02 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=10.3
Q ss_pred CHH-HHHHHHHHHHHHHHH
Q 026460 54 DYG-LFKRAYRASLDVSKL 71 (238)
Q Consensus 54 D~e-~~~~a~~e~~~l~~~ 71 (238)
|.| +.++..+++++++..
T Consensus 244 d~E~~lq~v~~~ce~lr~t 262 (594)
T KOG1086|consen 244 DNELLLQEVYNRCEQLRPT 262 (594)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 444 566666666665543
No 57
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=27.88 E-value=67 Score=23.20 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCeEEEEeccccCCCc-eeEEEEEEec
Q 026460 112 NMYVRWADKEGYRGRVVDKCCCKNGG-VKSATIEFEF 147 (238)
Q Consensus 112 ~my~~~a~~~g~~~~~~~~~~~~~~g-~~~~~~~i~g 147 (238)
+.|..||...||.+.+-.......+| +..+.+.=+-
T Consensus 1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r 37 (91)
T PF03101_consen 1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSR 37 (91)
T ss_pred CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECC
Confidence 36999999999999998766654444 6676665543
No 58
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.74 E-value=3.1e+02 Score=24.12 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 12 ~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
..+..+..++..++...+.|.++..+.+.+++++++= .-+.....+++.++.++..|+
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie-------~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIE-------RELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777666677777641 236677888888888777665
No 59
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=27.64 E-value=1.6e+02 Score=24.99 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCC
Q 026460 39 EEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQ-YEMSKLLRGP 84 (238)
Q Consensus 39 ~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~-le~~ll~~~~ 84 (238)
+....|.+++..++.+++.+++|.+.+..|.+..+. ..+..|++.+
T Consensus 101 ~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llkak 147 (196)
T PF12685_consen 101 KQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKAK 147 (196)
T ss_dssp HHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556666655556889999999999998766543 3344444333
No 60
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=27.08 E-value=63 Score=27.03 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=18.8
Q ss_pred CCcccCCCCeeEEEeecCeeEEEeeccc
Q 026460 209 GERQSIAKPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 209 GQ~VNkteSAVRitH~PTGi~V~~q~eR 236 (238)
|..|.. ...||+.|++||--..+.+.+
T Consensus 62 g~~v~~-g~~iRL~H~~Tg~yL~~~~~~ 88 (190)
T PF02815_consen 62 GGPVKW-GDVIRLRHLSTGKYLHSHDVK 88 (190)
T ss_dssp TSB-BT-TSEEEEEETTTS-EEEEEEEE
T ss_pred CCcccC-CCEEEEEEccCCCEEEEcccc
Confidence 555544 889999999999766665544
No 61
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.75 E-value=1.1e+02 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKD 33 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~ 33 (238)
+.+|+| +|+++.+.++-...|-..+.+...
T Consensus 179 ~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~ 208 (344)
T PF12777_consen 179 LKNPDF--NPEKVRKASKAAGSLCKWVRAMVK 208 (344)
T ss_dssp TTSTTS--SHHHHHHH-TTHHHHHHHHHHHHH
T ss_pred hcCCCC--CHHHHHHHhhcchHHHHHHHHHHH
Confidence 578888 799999998887777776665433
No 62
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=26.71 E-value=1.8e+02 Score=25.95 Aligned_cols=51 Identities=16% Similarity=-0.015 Sum_probs=41.8
Q ss_pred ecCCCCchHHHHHHHHHHHHHHHHHHcC-CeEEEEeccccC--CCceeEEEEEE
Q 026460 95 KAGSNGICPEIWAEQLLNMYVRWADKEG-YRGRVVDKCCCK--NGGVKSATIEF 145 (238)
Q Consensus 95 ~aG~GG~Ea~~fa~~L~~my~~~a~~~g-~~~~~~~~~~~~--~~g~~~~~~~i 145 (238)
..+.-+.+|......++.+|.+..+.-| ..+.++....++ .|+.++-.+++
T Consensus 152 ~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~ 205 (264)
T cd00772 152 SAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEA 205 (264)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEE
Confidence 3456788999999999999999999999 899999998887 45566655544
No 63
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=25.96 E-value=63 Score=21.32 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=15.9
Q ss_pred CCeeEEEeecCeeEEEeeccc
Q 026460 216 KPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 216 eSAVRitH~PTGi~V~~q~eR 236 (238)
.+.|||.|.-||--..+.+.+
T Consensus 7 g~~vrL~H~~tg~yL~s~~~~ 27 (57)
T smart00472 7 GDVVRLRHVTTGRYLHSHENK 27 (57)
T ss_pred CCEEEEEEhhhCcEeecCCCC
Confidence 588999999999666555543
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.81 E-value=3.4e+02 Score=21.61 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 026460 58 FKRAYRASLDV 68 (238)
Q Consensus 58 ~~~a~~e~~~l 68 (238)
.+++..++.++
T Consensus 98 veEL~~Dv~Dl 108 (120)
T PF12325_consen 98 VEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 65
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=25.68 E-value=3.5e+02 Score=25.38 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHH----HHHHHHHHHHHH
Q 026460 30 ALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA----SLDVSKLLDQYE 76 (238)
Q Consensus 30 ~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e----~~~l~~~l~~le 76 (238)
...+|...++..+.+.+++-+...|+...+++..+ ...+.+++++|+
T Consensus 265 LV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELe 315 (336)
T PF05055_consen 265 LVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELE 315 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34566677777777777775444445444443333 444667777776
No 66
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=25.33 E-value=2.4e+02 Score=24.87 Aligned_cols=51 Identities=18% Similarity=0.049 Sum_probs=40.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEec
Q 026460 97 GSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEF 147 (238)
Q Consensus 97 G~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g 147 (238)
|.-..+|..+...++.+|.++.+.-|..+.++....+..+|..+-+..++.
T Consensus 148 ~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~ 198 (255)
T cd00779 148 DIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLS 198 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEE
Confidence 444467777788999999999999999999998877888886665555553
No 67
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=25.29 E-value=2.1e+02 Score=24.86 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026460 3 RNYNLWDDPTKSNEVLVKLAD 23 (238)
Q Consensus 3 ~~p~~w~D~~ka~~l~kel~~ 23 (238)
.||-+|-||..+..+.+.+++
T Consensus 90 ~npH~Wldp~~~~~~~~~Ia~ 110 (256)
T PF01297_consen 90 HNPHVWLDPENAKKMAEAIAD 110 (256)
T ss_dssp BESTGGGSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHH
Confidence 378999999999888777654
No 68
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.27 E-value=28 Score=25.71 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=7.8
Q ss_pred eEEEeecCee
Q 026460 219 ACIQHIPTGI 228 (238)
Q Consensus 219 VRitH~PTGi 228 (238)
|-+=|+||||
T Consensus 30 is~Eh~PSGI 39 (76)
T cd04911 30 ISYEHMPSGI 39 (76)
T ss_pred CCEeeecCCC
Confidence 4567999995
No 69
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=25.16 E-value=3e+02 Score=20.61 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Q 026460 31 LKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLD 73 (238)
Q Consensus 31 ~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~ 73 (238)
+++++=.++-++-+.-.+.+ ..||++++-|...+++.+.++.
T Consensus 5 ~kQve~aVetAqkmvG~AT~-smdp~~Le~A~qAve~Ar~ql~ 46 (79)
T PF10819_consen 5 LKQVEMAVETAQKMVGQATM-SMDPDQLEHATQAVEDAREQLS 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555544444 3466666666666665554443
No 70
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=25.07 E-value=2.9e+02 Score=28.13 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHH
Q 026460 23 DSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLL 72 (238)
Q Consensus 23 ~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l 72 (238)
+-..+++.++++...+++++.+++ +.|.+-+....++....++.+
T Consensus 174 N~~~i~~~l~~~~~~l~~~~~~l~-----~~d~~~l~~~~~~~~~~r~~~ 218 (673)
T PRK11861 174 NRAALLDELDAYTAVLARLRAAID-----AGDGAALEAVFARSRAARAAW 218 (673)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHH
Confidence 334566667777777777777664 235544444444444444443
No 71
>PRK10869 recombination and repair protein; Provisional
Probab=25.05 E-value=5.1e+02 Score=25.80 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHH
Q 026460 8 WDDPTKSNEVLVKLADSLKVVNALK 32 (238)
Q Consensus 8 w~D~~ka~~l~kel~~L~~~~~~~~ 32 (238)
--||.+...+..++..|..+..+|.
T Consensus 292 ~~dp~~l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 292 DLDPNRLAELEQRLSKQISLARKHH 316 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3478888888877777766666554
No 72
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=24.75 E-value=1.3e+02 Score=27.30 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEE
Q 026460 100 GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEF 145 (238)
Q Consensus 100 G~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i 145 (238)
+.++..+...++++|.++.+.-|+.+.++....++.+|..+-++.+
T Consensus 172 ~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~ 217 (297)
T cd00770 172 PEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDI 217 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheee
Confidence 4688999999999999999999999999999988887765555444
No 73
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=23.96 E-value=93 Score=23.10 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=16.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 026460 99 NGICPEIWAEQLLNMYVRWADK 120 (238)
Q Consensus 99 GG~Ea~~fa~~L~~my~~~a~~ 120 (238)
-|-|+.+ ...|++||+.||..
T Consensus 28 kghE~~d-L~~ll~~Yq~W~h~ 48 (83)
T PF07962_consen 28 KGHEYED-LRRLLQFYQLWAHR 48 (83)
T ss_pred CCCHHHH-HHHHHHHHHHHHHh
Confidence 3666765 67899999999975
No 74
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=23.17 E-value=3.3e+02 Score=23.10 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 27 VVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 27 ~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
.+..+.+..+.+.+++...+-+.+ +-....++.+.++++.+.|.+++
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d---~Iv~~~~i~e~IKd~de~L~~I~ 155 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKD---NIVTEKLIEELIKDFDERLKEIR 155 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh---hccccHHHHHHHHHHHHHHHHHH
Confidence 444444444455555443333321 23445556666666666665554
No 75
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.06 E-value=5.6e+02 Score=23.11 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=12.9
Q ss_pred CCCCHH---HHHHHHHHHHhHHHHHHHHH
Q 026460 7 LWDDPT---KSNEVLVKLADSLKVVNALK 32 (238)
Q Consensus 7 ~w~D~~---ka~~l~kel~~L~~~~~~~~ 32 (238)
.|..+. +...+..++..|...++.|+
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE 200 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLE 200 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455553 33444445555555555444
No 76
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.65 E-value=6e+02 Score=23.30 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEe
Q 026460 107 AEQLLNMYVRWADKEGYRGRVVD 129 (238)
Q Consensus 107 a~~L~~my~~~a~~~g~~~~~~~ 129 (238)
+..|-..|..+....||++.-++
T Consensus 278 v~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 278 VKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHCcEEEEEe
Confidence 56788889999999999998876
No 77
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.31 E-value=2.9e+02 Score=24.29 Aligned_cols=20 Identities=10% Similarity=0.411 Sum_probs=16.9
Q ss_pred CCcCCCCHHHHHHHHHHHHh
Q 026460 4 NYNLWDDPTKSNEVLVKLAD 23 (238)
Q Consensus 4 ~p~~w~D~~ka~~l~kel~~ 23 (238)
||-+|-||..+..+.+.+++
T Consensus 111 dPH~Wldp~~~~~~a~~I~~ 130 (266)
T cd01018 111 DPHIWLSPANAKIMAENIYE 130 (266)
T ss_pred CCccCcCHHHHHHHHHHHHH
Confidence 89999999999888777553
No 78
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=21.80 E-value=2.7e+02 Score=23.28 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=39.2
Q ss_pred HHHHHHHcCCeEEEEeccccCCCceeEEEEEEecc-----ccccccccccccceee-cCCC
Q 026460 114 YVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFE-----YAFGYLSGETGAHCLI-NFPN 168 (238)
Q Consensus 114 y~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~-----~a~~~l~~e~Gvhr~~-~~~~ 168 (238)
......++||++.-+...+.+..|+..+++.+.|+ .....|.-=--|+.|. ..+.
T Consensus 19 I~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~ 79 (161)
T PRK11895 19 VAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEE 79 (161)
T ss_pred HHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCc
Confidence 34555689999998888887767999999999985 2344445556667776 5543
No 79
>TIGR03561 organ_hyd_perox peroxiredoxin, Ohr subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein.
Probab=21.54 E-value=3.1e+02 Score=21.54 Aligned_cols=23 Identities=9% Similarity=-0.142 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEE
Q 026460 104 EIWAEQLLNMYVRWADKEGYRGR 126 (238)
Q Consensus 104 ~~fa~~L~~my~~~a~~~g~~~~ 126 (238)
.-++..+.-.+..+|+++||++.
T Consensus 48 aAlasC~~~t~~~~a~~~g~~~~ 70 (134)
T TIGR03561 48 AGYAACFDGALKLVAGQAKVKLP 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC
Confidence 44677778888899999999873
No 80
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=21.39 E-value=2.8e+02 Score=20.34 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecc
Q 026460 108 EQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFE 148 (238)
Q Consensus 108 ~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~ 148 (238)
+.++....+||..+|.+++-++.... +++.|+|.
T Consensus 18 e~i~~aIE~YC~~~~~~l~Fisr~~P-------i~~~idg~ 51 (74)
T PF14201_consen 18 EEICEAIEKYCIKNGESLEFISRDKP-------ITFKIDGV 51 (74)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCc-------EEEEECCe
Confidence 34777889999999999999987653 56666664
No 81
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=21.37 E-value=4.7e+02 Score=21.61 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=36.1
Q ss_pred CcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 5 YNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 5 p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
...|=-++-+.+|..||..|... ..++...+.++...=++.+. ..-..|.++...++..+..|+
T Consensus 4 ~~~~lT~eg~~~L~~EL~~L~~~---r~~i~~~i~~Ar~~GDlsEN-----aey~aak~~q~~~e~RI~~L~ 67 (158)
T PRK05892 4 KSKGLAPAARDHLEAELARLRAR---RDRLAVEVNDRGMIGDHGDQ-----AEAIQRADELARLDDRINELD 67 (158)
T ss_pred CCCccCHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhCCCcchh-----hhHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888652 34444555555443333221 123444555555666666665
No 82
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=21.31 E-value=2.3e+02 Score=24.05 Aligned_cols=58 Identities=9% Similarity=-0.065 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccc-----cccccccccccceee-cCCC
Q 026460 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEY-----AFGYLSGETGAHCLI-NFPN 168 (238)
Q Consensus 111 ~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~-----a~~~l~~e~Gvhr~~-~~~~ 168 (238)
+........++|++++-+...+.+..|+..+++.+.|+. .-..|.-=.-|+.|. ..+.
T Consensus 16 L~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~ 79 (174)
T CHL00100 16 LTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNI 79 (174)
T ss_pred HHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCc
Confidence 445566677899999999998877889999999999862 222333335566666 5443
No 83
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.27 E-value=6.4e+02 Score=23.11 Aligned_cols=20 Identities=15% Similarity=0.239 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHhHHHHHH
Q 026460 10 DPTKSNEVLVKLADSLKVVN 29 (238)
Q Consensus 10 D~~ka~~l~kel~~L~~~~~ 29 (238)
|+.+...+..+|..+...+.
T Consensus 207 D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIE 226 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 84
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=21.20 E-value=7.2e+02 Score=23.64 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026460 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIA 45 (238)
Q Consensus 12 ~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~ 45 (238)
.+..+-..++..+...++.|+++...+.++.+|+
T Consensus 36 ~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~ 69 (360)
T TIGR00019 36 RKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEIL 69 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777777777765
No 85
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.16 E-value=3.4e+02 Score=19.88 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------cCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEA-------------IDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 12 ~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~-------------~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
.+++.+..++..+...+..++.-.+.++.+..-++.+..+. +-+++.+.+.+.++.++..++.++
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666766666666665544444444443333332110 013556666666666666665543
No 86
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=21.15 E-value=4.9e+02 Score=21.73 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q 026460 11 PTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65 (238)
Q Consensus 11 ~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~ 65 (238)
|+...+-.-+|+.|...-+.+.+|+..+.....+-..+++--.|++.++.+..|+
T Consensus 101 Pd~v~~qVp~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l~~el 155 (157)
T PF05591_consen 101 PDAVAEQVPELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKLKSEL 155 (157)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 4444444445555555555555555555544444433332223666666555544
No 87
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.95 E-value=4.4e+02 Score=28.75 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=34.3
Q ss_pred CCCCcCCCCHHHHHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026460 2 VRNYNLWDDPTKSNEVLVK------------LADSLKVVNALKDLRYKAEEAKLIAQLAE 49 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~ke------------l~~L~~~~~~~~~l~~~~~e~~~l~el~~ 49 (238)
+.+|-||=.+++|+.-+.. =..|+.+-+.|..+...++.++.++.+.+
T Consensus 175 veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~ 234 (1074)
T KOG0250|consen 175 VENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKE 234 (1074)
T ss_pred CCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888765553 34477777777777788888777776654
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=3.5e+02 Score=19.91 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026460 30 ALKDLRYKAEEAKLIAQLA 48 (238)
Q Consensus 30 ~~~~l~~~~~e~~~l~el~ 48 (238)
.|++++.+++.+-+-+.|+
T Consensus 5 v~ekLE~KiqqAvdTI~LL 23 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLL 23 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 89
>COG5023 Tubulin [Cytoskeleton]
Probab=20.60 E-value=2.3e+02 Score=27.49 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 026460 52 AIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDV 87 (238)
Q Consensus 52 ~~D~e~~~~a~~e~~~l~~~l~~le~~ll~~~~~D~ 87 (238)
..|+.++.++.+.+.+|..+..+.+.-..+.+.+|.
T Consensus 405 gmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~~~ 440 (443)
T COG5023 405 GMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDE 440 (443)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhccccccchhhhh
Confidence 458889999999999999888888777777766543
No 90
>PF04983 RNA_pol_Rpb1_3: RNA polymerase Rpb1, domain 3; InterPro: IPR007066 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1ZYR_D 1SMY_D 2A68_N 2O5J_D 3AOH_N 2O5I_D 2CW0_N 2A6H_N 2A69_D 3EQL_D ....
Probab=20.56 E-value=77 Score=25.56 Aligned_cols=29 Identities=7% Similarity=0.214 Sum_probs=25.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHcCCeEEE
Q 026460 99 NGICPEIWAEQLLNMYVRWADKEGYRGRV 127 (238)
Q Consensus 99 GG~Ea~~fa~~L~~my~~~a~~~g~~~~~ 127 (238)
|+.+|..|...+.++-.+|+.+.|+.+.+
T Consensus 127 G~~~~~~~ld~i~~lg~~~~t~~GfSvgi 155 (158)
T PF04983_consen 127 GPEATVQFLDAIKRLGFRYLTRSGFSVGI 155 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTBB-SG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCeeEec
Confidence 57899999999999999999999987643
No 91
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=20.51 E-value=4.2e+02 Score=20.72 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026460 13 KSNEVLVKLADSLKVVNALKDLRYKA 38 (238)
Q Consensus 13 ka~~l~kel~~L~~~~~~~~~l~~~~ 38 (238)
.+..+..+++.|..-++.|+++++.+
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888877777
No 92
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.51 E-value=6.9e+02 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEe
Q 026460 107 AEQLLNMYVRWADKEGYRGRVVD 129 (238)
Q Consensus 107 a~~L~~my~~~a~~~g~~~~~~~ 129 (238)
+..|.+-|..+-...||++.-++
T Consensus 273 i~~Lk~~~~~Le~l~g~~~~~~~ 295 (312)
T smart00787 273 IEKLKEQLKLLQSLTGWKITKLS 295 (312)
T ss_pred HHHHHHHHHHHHHHhCCeeEecc
Confidence 34677778888888999988774
No 93
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.38 E-value=9.9e+02 Score=24.91 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=19.7
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHH
Q 026460 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWA 118 (238)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a 118 (238)
.++.-...+.|.+++..|..+|. +++..+..+.+
T Consensus 488 ~~~~g~~~I~l~~~~~~g~~~~~---k~i~~~ls~~~ 521 (764)
T TIGR02865 488 NTEGGNIDVELTIAACGGRGECE---KKIAPIISEVT 521 (764)
T ss_pred EcCCCcEEEEEEEcCCCCccchH---HHHHHHHHHHh
Confidence 34443444556667777777774 55555555554
No 94
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.36 E-value=2.8e+02 Score=25.02 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHH--HhhcCCCCCCCCCceEEEecCCCCchHHHH
Q 026460 60 RAYRASLDVSKLLDQYE--MSKLLRGPNDVEGASVTIKAGSNGICPEIW 106 (238)
Q Consensus 60 ~a~~e~~~l~~~l~~le--~~ll~~~~~D~~~~~leI~aG~GG~Ea~~f 106 (238)
+.++.++.++.....|+ +..+|..-+|-..-|=|+-+|.--.|-.+|
T Consensus 167 e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i 215 (290)
T COG4026 167 EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELI 215 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHH
Confidence 33344444444444443 223333334445556667777665554444
No 95
>COG4915 XpaC 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only]
Probab=20.32 E-value=2.3e+02 Score=24.65 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH
Q 026460 7 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVS 69 (238)
Q Consensus 7 ~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~ 69 (238)
|+++-+.+-++.-+++.|+..-..=+++.++++|...++.-+.- .-.+|+.+....+++.|.
T Consensus 131 fyshLdn~veLtekya~L~kqpvKskei~q~LseTrilL~elsr-~i~kdl~~ll~dDvn~Ld 192 (204)
T COG4915 131 FYSHLDNMVELTEKYAFLKKQPVKSKEINQDLSETRILLKELSR-SIEKDLHELLMDDVNVLD 192 (204)
T ss_pred HHHhhHHHHHHHHHHHHHHhCCcccHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHH
Confidence 34444555555555555554444444556666666655532221 224455665555555554
No 96
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=20.26 E-value=3.4e+02 Score=24.78 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=16.1
Q ss_pred CCcCCCCHHHHHHHHHHHH
Q 026460 4 NYNLWDDPTKSNEVLVKLA 22 (238)
Q Consensus 4 ~p~~w~D~~ka~~l~kel~ 22 (238)
||=+|-||..++.+.+.+.
T Consensus 144 dPHiWldp~~~~~~a~~I~ 162 (311)
T PRK09545 144 NMHIWLSPEIARATAVAIH 162 (311)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 8999999999988877644
No 97
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=20.06 E-value=4.2e+02 Score=20.49 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEeccccC-CCceeE--EEEEEeccc--cccccccccccceee
Q 026460 107 AEQLLNMYVRWADKEGYRGRVVDKCCCK-NGGVKS--ATIEFEFEY--AFGYLSGETGAHCLI 164 (238)
Q Consensus 107 a~~L~~my~~~a~~~g~~~~~~~~~~~~-~~g~~~--~~~~i~g~~--a~~~l~~e~Gvhr~~ 164 (238)
...|+.-..++|...|.++.-++..+.. ..+|.. +.|.+.|.| ...|+..-...-|++
T Consensus 52 ~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv 114 (144)
T PF04350_consen 52 IPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIV 114 (144)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-E
T ss_pred HHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeE
Confidence 4567777889999999998887765433 245555 566667754 344555444444443
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.01 E-value=5.3e+02 Score=26.00 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 36 YKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 36 ~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
+.+.|++..+.++.++ ++...+|.+.|...+..|+
T Consensus 417 rel~Elks~lrv~qkE------KEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 417 RELQELKSSLRVAQKE------KEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3344455444444321 3344444444545555554
Done!