Query 026460
Match_columns 238
No_of_seqs 157 out of 1382
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 1.4E-81 4.7E-86 579.3 26.6 235 2-238 41-280 (365)
2 1zbt_A RF-1, peptide chain rel 100.0 5.2E-80 1.8E-84 568.9 22.2 236 1-238 32-276 (371)
3 3d5a_X RF1, peptide chain rele 100.0 3E-79 1E-83 561.4 25.1 232 1-238 18-258 (354)
4 2b3t_B RF-1, peptide chain rel 100.0 5.2E-79 1.8E-83 560.9 15.3 231 2-238 23-263 (360)
5 2ihr_1 Peptide chain release f 100.0 8.5E-79 2.9E-83 560.3 15.8 231 1-238 32-268 (365)
6 1rq0_A RF-1, peptide chain rel 100.0 6.3E-73 2.1E-77 517.1 19.5 221 2-238 12-239 (342)
7 2rsm_A Probable peptide chain 100.0 5.1E-30 1.7E-34 200.5 5.4 75 160-238 10-89 (115)
8 1j26_A Immature colon carcinom 99.7 5.9E-18 2E-22 132.7 6.2 50 189-238 11-88 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.7 9.7E-18 3.3E-22 130.7 4.7 47 192-238 7-80 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.6 2.5E-16 8.4E-21 127.9 3.7 47 192-238 7-80 (140)
11 2lw1_A ABC transporter ATP-bin 86.7 1.2 4E-05 32.5 5.3 34 2-35 45-80 (89)
12 2a26_A Calcyclin-binding prote 63.3 28 0.00097 22.7 6.5 41 32-76 7-47 (50)
13 3err_A Fusion protein of micro 62.6 39 0.0013 32.2 9.7 62 2-75 145-206 (536)
14 4fla_A Regulation of nuclear P 50.3 93 0.0032 24.7 10.7 65 9-73 65-131 (152)
15 3pe9_A Fibronectin(III)-like m 50.2 24 0.00082 25.9 4.8 49 136-185 30-89 (98)
16 4ew8_A Sensor protein DIVL; si 42.2 1.3E+02 0.0045 24.0 10.5 87 33-128 50-141 (268)
17 1ysm_A Calcyclin-binding prote 39.5 75 0.0026 22.5 5.8 41 31-75 5-45 (77)
18 1oxz_A ADP-ribosylation factor 39.3 1.6E+02 0.0054 24.1 9.1 61 54-125 105-165 (186)
19 3qne_A Seryl-tRNA synthetase, 35.8 68 0.0023 30.3 6.5 44 100-143 309-352 (485)
20 2lf0_A Uncharacterized protein 35.3 69 0.0024 24.7 5.3 25 52-76 32-56 (123)
21 3d5a_X RF1, peptide chain rele 34.6 99 0.0034 28.0 7.1 61 12-75 32-95 (354)
22 3oja_B Anopheles plasmodium-re 33.3 1.7E+02 0.006 27.0 9.0 22 55-76 557-578 (597)
23 3de8_A Soluble cytochrome B562 33.3 28 0.00097 25.4 2.8 20 5-24 56-75 (106)
24 1naf_A ADP-ribosylation factor 33.3 1.8E+02 0.0063 23.1 8.2 22 54-75 89-110 (158)
25 1mqv_A Cytochrome C'; four-hel 32.5 77 0.0026 23.8 5.3 21 3-23 67-87 (125)
26 3lss_A Seryl-tRNA synthetase; 31.8 3.3E+02 0.011 25.5 11.6 19 1-19 6-27 (484)
27 1q08_A Zn(II)-responsive regul 26.9 1.2E+02 0.0042 21.1 5.3 46 31-76 12-59 (99)
28 4etr_A Putative uncharacterize 26.5 2.2E+02 0.0074 21.8 10.2 96 24-119 9-120 (153)
29 3vrc_A Cytochrome C'; C-type c 25.7 60 0.002 24.9 3.6 21 3-23 73-93 (131)
30 2rbd_A BH2358 protein; putativ 25.4 2.4E+02 0.0082 21.9 8.4 50 26-76 18-67 (171)
31 2lju_A Putative oxidoreductase 25.3 39 0.0013 25.5 2.4 17 115-131 73-89 (108)
32 3tuf_A Stage III sporulation p 25.1 1.9E+02 0.0066 24.0 6.8 34 40-73 99-132 (197)
33 3err_A Fusion protein of micro 23.6 1.4E+02 0.0048 28.3 6.5 42 102-143 399-440 (536)
34 2ykz_A Cytochrome C'; electron 22.2 1.4E+02 0.0046 22.4 5.0 20 3-22 68-87 (127)
35 2j8w_A Cytochrome C'; heme, ir 21.7 1.7E+02 0.0057 21.9 5.5 20 3-22 71-90 (129)
36 3lss_A Seryl-tRNA synthetase; 21.7 1.5E+02 0.0052 27.9 6.1 39 103-141 335-373 (484)
37 2fgc_A Acetolactate synthase, 21.5 1.7E+02 0.0057 24.2 5.7 38 111-148 43-80 (193)
38 1wle_A Seryl-tRNA synthetase; 20.8 1.5E+02 0.0051 27.9 6.0 39 101-139 345-383 (501)
39 3s6n_M SurviVal motor neuron p 20.3 97 0.0033 18.9 2.9 19 4-22 5-23 (37)
40 1pq4_A Periplasmic binding pro 20.2 2.1E+02 0.0072 24.4 6.4 21 3-23 130-150 (291)
41 3lbx_A Spectrin alpha chain, e 20.1 1.5E+02 0.0052 22.9 5.0 66 3-75 80-146 (161)
42 3ujp_A Mn transporter subunit; 20.0 2.5E+02 0.0084 24.3 6.9 19 4-22 129-147 (307)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=1.4e-81 Score=579.35 Aligned_cols=235 Identities=27% Similarity=0.430 Sum_probs=228.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLL 81 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~ll~ 81 (238)
|++|+||+|++++++++++++.|+.+++.|+++.+.+++++.+.+|+++ +.|++|+++|.+++..+++.+++++..+||
T Consensus 41 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-e~D~e~~~~a~~e~~~l~~~l~~le~~~ll 119 (365)
T 1gqe_A 41 LEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELDALEEKLAQLEFRRMF 119 (365)
T ss_dssp HHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6799999999999999999999999999999999999999999999976 469999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccccc
Q 026460 82 RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAH 161 (238)
Q Consensus 82 ~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~Gvh 161 (238)
+||+|.++|+|||+||+||+||++||++|||||.+||+++||++++++..+++.+|||+|++.|+|++||++||+|+|||
T Consensus 120 ~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvH 199 (365)
T 1gqe_A 120 SGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVH 199 (365)
T ss_dssp CSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEE
T ss_pred CCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeeccc
Q 026460 162 CLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTTLQ 236 (238)
Q Consensus 162 r~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~eR 236 (238)
||| +|||+++|||||| |+|+|+|++. +++++.|+++||+|+| |||| |||||||+|||||||+||||+|+||++|
T Consensus 200 RvqRvs~~es~gRrhTS~asV~V~Pe~~-~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~R 278 (365)
T 1gqe_A 200 RLVRKSPFDSGGRRHTSFSSAFVYPEVD-DDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDR 278 (365)
T ss_dssp EEEEECTTSSSCCEEEEEEEEEEEECCB-TTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSS
T ss_pred EEEEeCCCCCcCCCCcceeEEEEecCCC-cccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCC
Confidence 999 9999999999999 9999999984 4688999999999999 8999 9999999999999999999999999999
Q ss_pred cC
Q 026460 237 IR 238 (238)
Q Consensus 237 s~ 238 (238)
|.
T Consensus 279 SQ 280 (365)
T 1gqe_A 279 SQ 280 (365)
T ss_dssp CH
T ss_pred CH
Confidence 83
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=5.2e-80 Score=568.90 Aligned_cols=236 Identities=22% Similarity=0.254 Sum_probs=195.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH----
Q 026460 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE---- 76 (238)
Q Consensus 1 ~~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le---- 76 (238)
+|++|+||+|++++++++++++.|+++++.|+++.+..+++..+.+|+++.+.|++|+++|.+|+..+++.+++++
T Consensus 32 ~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~ 111 (371)
T 1zbt_A 32 LLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLR 111 (371)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999986423589999999999999999998877
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecccccccccc
Q 026460 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (238)
Q Consensus 77 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~ 156 (238)
..+||+||+|.++|+|||+||+||+||++||++|||||.+||+++||++++++..+++.||||+|++.|+|++||++||+
T Consensus 112 ~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~ 191 (371)
T 1zbt_A 112 FLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKY 191 (371)
T ss_dssp TTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGG
T ss_pred HhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEE
Q 026460 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVR 231 (238)
Q Consensus 157 e~Gvhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~ 231 (238)
|+|||||| +|||+++||+||| |+|+|+|++. ++++.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 192 EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~--ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~ 269 (371)
T 1zbt_A 192 ESGAHRVQRVPVTESQGRVHTSTATVLVMPEVE--EVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVE 269 (371)
T ss_dssp GCEEEEEEECCTTCSSCCCEEEEEEEEEEECCC--GGGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEE
T ss_pred ccCeEEEEeecCCCCCCcccccceEEEEecccc--ccccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEE
Confidence 99999999 9999999999999 9999999984 478999999999999 8999 99999999999999999999999
Q ss_pred eeccccC
Q 026460 232 GTTLQIR 238 (238)
Q Consensus 232 ~q~eRs~ 238 (238)
||++||.
T Consensus 270 ~q~eRSQ 276 (371)
T 1zbt_A 270 MQEERTQ 276 (371)
T ss_dssp ECSSSSH
T ss_pred ECCcCCH
Confidence 9999983
No 3
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=3e-79 Score=561.41 Aligned_cols=232 Identities=23% Similarity=0.311 Sum_probs=222.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH----
Q 026460 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE---- 76 (238)
Q Consensus 1 ~~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le---- 76 (238)
+|++|+||+|++++++++++++.|+.+++.|+++...++++.++.+|++ |++|+++|.+|+..+++.+++++
T Consensus 18 ~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 18 LLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKAEREALLARKEALEKELE 93 (354)
T ss_dssp HTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999864 89999999999999999998776
Q ss_pred HhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecccccccccc
Q 026460 77 MSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156 (238)
Q Consensus 77 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~ 156 (238)
..+||+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.||||+|++.|+|++||++||+
T Consensus 94 ~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~ 173 (354)
T 3d5a_X 94 RHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKY 173 (354)
T ss_dssp HHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGG
T ss_pred HhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEE
Q 026460 157 ETGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVR 231 (238)
Q Consensus 157 e~Gvhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~ 231 (238)
|+|||||| +|||+++||+||| |+|+|+|++. ++++.|+++||+|+| |||| |||||||+|||||||+||||+|.
T Consensus 174 E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~--~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~ 251 (354)
T 3d5a_X 174 ESGVHRVQRVPVTETQGRIHTSTATVAVLPKAE--EEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVT 251 (354)
T ss_dssp GCSEEEEEECCSSCSSCCCEEEEEEEEEEECCC--CCCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEE
T ss_pred ccCeeEEEecCCcCCCCcCccCceEEEEeccCc--ccccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEE
Confidence 99999999 9999999999999 9999999984 478999999999999 8999 99999999999999999999999
Q ss_pred eeccccC
Q 026460 232 GTTLQIR 238 (238)
Q Consensus 232 ~q~eRs~ 238 (238)
||++||.
T Consensus 252 ~q~~RSQ 258 (354)
T 3d5a_X 252 CQDSRSQ 258 (354)
T ss_dssp ECCSSCH
T ss_pred ECCCCCH
Confidence 9999983
No 4
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=5.2e-79 Score=560.88 Aligned_cols=231 Identities=21% Similarity=0.269 Sum_probs=190.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHH----
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM---- 77 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~---- 77 (238)
|++|+||+|++++++++++++.|+++++.|+++...++++..+.+|+ + |++|+++|.+|+..+++.+++++.
T Consensus 23 ~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e---D~e~~~~a~~e~~~l~~~~~~le~~l~~ 98 (360)
T 2b3t_B 23 LGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D---DPEMREMAQDELREAKEKSEQLEQQLQV 98 (360)
T ss_dssp HHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------------------CCCC
T ss_pred hcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999998 3 889999999999999999999886
Q ss_pred hhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccc
Q 026460 78 SKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGE 157 (238)
Q Consensus 78 ~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e 157 (238)
.+||+||+|.++|+|||+||+||+||++||++|||||.+||+++||++++++..+++.||||+|++.|+|++||++||+|
T Consensus 99 ~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~~~~~i~G~~ayg~Lk~E 178 (360)
T 2b3t_B 99 LLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFE 178 (360)
T ss_dssp CCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSSCHHHHGGG
T ss_pred hhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEEcccHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceee-cCCCCCCCCccce-eEEEeeeCCCCCCCC-CcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEE
Q 026460 158 TGAHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPD-LQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVR 231 (238)
Q Consensus 158 ~Gvhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~-~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~ 231 (238)
+|||||| +|||+++||+||| |+|+|+|++. +++ +.|+++||+|+| |||| |||||||+|||||||+||||+|+
T Consensus 179 ~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~--~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~ 256 (360)
T 2b3t_B 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELP--DAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVE 256 (360)
T ss_dssp CEEEEEEECCTTCSSCCCEEEEEEEECCBCCC--TTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEE
T ss_pred cCeEEEEecCCCcccCcCCccceEEEEecCcc--cccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEE
Confidence 9999999 9999999999999 9999999984 366 889999999999 8999 99999999999999999999999
Q ss_pred eeccccC
Q 026460 232 GTTLQIR 238 (238)
Q Consensus 232 ~q~eRs~ 238 (238)
||++||.
T Consensus 257 ~q~~RSQ 263 (360)
T 2b3t_B 257 CQDERSQ 263 (360)
T ss_dssp EEESSCH
T ss_pred ECCCCCH
Confidence 9999983
No 5
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=8.5e-79 Score=560.34 Aligned_cols=231 Identities=28% Similarity=0.404 Sum_probs=221.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026460 1 MVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQ-LAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSK 79 (238)
Q Consensus 1 ~~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~e-l~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~l 79 (238)
+|++|+||+|++++++++++++.|+.+++.|+++...+++++.+.+ |++++ | ++|.+++..+++.++++++.+
T Consensus 32 ~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ee--d----~~a~~e~~~l~~~~~~le~~~ 105 (365)
T 2ihr_1 32 RLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE--R----EALKPELEEAAKKLDELYHQT 105 (365)
T ss_dssp STTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTT--G----GGTGGGTHHHHHHHHHHHHHH
T ss_pred HhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--H----HHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999 87542 3 788999999999999999999
Q ss_pred cCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccc
Q 026460 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETG 159 (238)
Q Consensus 80 l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~G 159 (238)
||+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+|+|
T Consensus 106 ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~G 185 (365)
T 2ihr_1 106 LLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAG 185 (365)
T ss_dssp HTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCE
T ss_pred hcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEEEEEEEccCHHHhhhhCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeec
Q 026460 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTT 234 (238)
Q Consensus 160 vhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~ 234 (238)
||||| +|||+++|||||| |+|+|+|++. +++++.|+++||+|+| |||| |||||||+|||||||+||||+|.||+
T Consensus 186 vHRvqRvs~~es~gRrhTS~asV~V~P~~~-~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~ 264 (365)
T 2ihr_1 186 VHRLVRPSPFDASGRRHTSFAGVEVIPEVD-EEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQT 264 (365)
T ss_dssp EEEEEEECTTSSSCCEEEEEEEEEEEEECC-SSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECS
T ss_pred EEEEEEeCCCCccCCccceeEEEEEecCCC-cccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECC
Confidence 99999 9999999999999 9999999984 4578999999999999 8999 99999999999999999999999999
Q ss_pred cccC
Q 026460 235 LQIR 238 (238)
Q Consensus 235 eRs~ 238 (238)
+||.
T Consensus 265 ~RSQ 268 (365)
T 2ihr_1 265 TRSQ 268 (365)
T ss_dssp SSCH
T ss_pred CCCH
Confidence 9983
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=6.3e-73 Score=517.14 Aligned_cols=221 Identities=24% Similarity=0.305 Sum_probs=198.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH--Hhh
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE--MSK 79 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le--~~l 79 (238)
|++|+| |++++++++++++.|+.+++.|+++. .+++++.|+ ++ +.|+ .+|+..+++.+++++ +..
T Consensus 12 ~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~-~~~~~~~l~---~e-~~D~------~~e~~~l~~~l~~le~~l~~ 78 (342)
T 1rq0_A 12 LARPDL--TPEQMKNYGMEYAKIEEIENITNRIK-ETQEFIELL---RE-EGEN------ELEIEKYEKELDQLYQELLF 78 (342)
T ss_dssp HHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTT---TT-TTTC------CSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHH---Hh-cCCH------HHHHHHHHHHHHHHHHHHHH
Confidence 679999 99999999999999999999999999 666666664 33 2244 556677777777766 444
Q ss_pred cCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEeccccccccccccc
Q 026460 80 LLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETG 159 (238)
Q Consensus 80 l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~~a~~~l~~e~G 159 (238)
++. |+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++||+|+|
T Consensus 79 lL~-p~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~G 157 (342)
T 1rq0_A 79 LLS-PEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESG 157 (342)
T ss_dssp HHS-CSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCE
T ss_pred hcC-ccccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCHHHHHhhccC
Confidence 554 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeec
Q 026460 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTT 234 (238)
Q Consensus 160 vhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~ 234 (238)
||||| +|||+++||+||| |+|+|+|++. ++++.|+++||+|+| |||| |||||||+|||||||+||||+|.||+
T Consensus 158 vHRvqRvp~~es~gR~hTS~asV~V~Pe~~--~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~ 235 (342)
T 1rq0_A 158 VHRVQRVPVTESGGRIHTSTATVAVLPEIE--EKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQN 235 (342)
T ss_dssp EEEEEECCTTSCSCCCEEEEEEEEEEECCC--GGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEE
T ss_pred eEEEEecCCcccCCCCcccceEEEEecccc--ccccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECC
Confidence 99999 9999999999999 9999999984 478999999999999 8999 99999999999999999999999999
Q ss_pred cccC
Q 026460 235 LQIR 238 (238)
Q Consensus 235 eRs~ 238 (238)
+||.
T Consensus 236 ~RSQ 239 (342)
T 1rq0_A 236 ERSQ 239 (342)
T ss_dssp SSCH
T ss_pred CCCH
Confidence 9983
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.96 E-value=5.1e-30 Score=200.53 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=70.0
Q ss_pred cceee-cCCCCCCCCccce-eEEEeeeCCCCCCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEeecCeeEEEeec
Q 026460 160 AHCLI-NFPNGSFPHEATL-ACVDVVPLFLETSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQHIPTGIAVRGTT 234 (238)
Q Consensus 160 vhr~~-~~~~~~~~r~~ts-~~V~v~P~~~~~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH~PTGi~V~~q~ 234 (238)
-|||| +|+++++| || ++|.|+|+. |++..+.|+++||+|+| +||| |||||||+|||||+|+||||+|.||+
T Consensus 10 g~rvqrvp~tes~g---ts~~~v~v~p~~-d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~ 85 (115)
T 2rsm_A 10 GLRLQEKPALLFPG---MAASTVQVAGRK-DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQ 85 (115)
T ss_dssp CCCCCCCCCCCCCC---CCCCCCCCCSCC-CCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECC
T ss_pred ceeEEecCcccCCc---cceEEEEecccc-CCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcC
Confidence 48999 99999998 99 999999997 44667999999999999 8999 99999999999999999999999999
Q ss_pred cccC
Q 026460 235 LQIR 238 (238)
Q Consensus 235 eRs~ 238 (238)
+||.
T Consensus 86 ~RSQ 89 (115)
T 2rsm_A 86 TRSV 89 (115)
T ss_dssp SSCH
T ss_pred CCCH
Confidence 9983
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.71 E-value=5.9e-18 Score=132.67 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=46.5
Q ss_pred CCCCCcCCCCCeEEec--CCCC-CCcccCCCCeeEEE-eecCe------------------------eEEEeeccccC
Q 026460 189 TSPDLQISDEDLLFSS--PSLP-GERQSIAKPAACIQ-HIPTG------------------------IAVRGTTLQIR 238 (238)
Q Consensus 189 ~~~~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRit-H~PTG------------------------i~V~~q~eRs~ 238 (238)
+.+++.|+++||+|+| |||| |||||||+|||||+ |+||| |+|.||++||+
T Consensus 11 ~~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ 88 (112)
T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQ 88 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSH
T ss_pred cceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCH
Confidence 3567889999999999 9999 99999999999997 99998 99999999984
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.69 E-value=9.7e-18 Score=130.67 Aligned_cols=47 Identities=13% Similarity=0.401 Sum_probs=44.6
Q ss_pred CCcCCCCCeEEec--CCCC-CCcccCCCCeeEEEe------ec-----------------Ce-eEEEeeccccC
Q 026460 192 DLQISDEDLLFSS--PSLP-GERQSIAKPAACIQH------IP-----------------TG-IAVRGTTLQIR 238 (238)
Q Consensus 192 ~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRitH------~P-----------------TG-i~V~~q~eRs~ 238 (238)
++.|+++||+|+| |||| |||||||+|||||+| +| || |+|+||++||+
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ 80 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQ 80 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCH
Confidence 5789999999999 9999 999999999999999 99 98 99999999984
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.60 E-value=2.5e-16 Score=127.95 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=44.1
Q ss_pred CCcCCCCCeEEec--CCCC-CCcccCCCCeeEEE------eecC------------------eeEEEeeccccC
Q 026460 192 DLQISDEDLLFSS--PSLP-GERQSIAKPAACIQ------HIPT------------------GIAVRGTTLQIR 238 (238)
Q Consensus 192 ~~~i~~~dl~i~t--~sG~-GQ~VNkteSAVRit------H~PT------------------Gi~V~~q~eRs~ 238 (238)
++.|+++||+|+| |||| |||||||+|||+|+ |+|| ||+|.||++||+
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ 80 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQ 80 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCH
Confidence 5789999999999 9999 99999999999999 7998 599999999984
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=86.70 E-value=1.2 Score=32.47 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=26.7
Q ss_pred CCCCcCC-CCHHHHHHHHHHHHhHHHHHHH-HHHHH
Q 026460 2 VRNYNLW-DDPTKSNEVLVKLADSLKVVNA-LKDLR 35 (238)
Q Consensus 2 ~~~p~~w-~D~~ka~~l~kel~~L~~~~~~-~~~l~ 35 (238)
|+||+|+ +|+.+.+.++.++..+...++. |.+|.
T Consensus 45 ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 45 VADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789998 6899999999998888877654 44553
No 12
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=63.30 E-value=28 Score=22.70 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 32 KDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 32 ~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
.+++.+++|++.|++.+ .-+-.+..+..++..++..+..++
T Consensus 7 eeL~~DL~El~~Ll~~A----kR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 7 EELQKDLEEVKVLLEKA----TRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 57788888888888764 467888888889998887776554
No 13
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=62.63 E-value=39 Score=32.22 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=42.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 026460 2 VRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (238)
Q Consensus 2 ~~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~l 75 (238)
+.+|+| +++++.+.++.-..|-..+.+...+....++.+.+.+- ++.+++++..++++++++
T Consensus 145 ~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~e----------Lk~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 145 MSNPSY--NYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNE----------LQKLEDDAKDNQQKLEAL 206 (536)
T ss_dssp TTSTTC--SHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC--CHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHH----------HHHHHHHHHHHHHHHHHH
Confidence 567887 78999999998888888888776666666665555532 444555566666666554
No 14
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=50.32 E-value=93 Score=24.66 Aligned_cols=65 Identities=8% Similarity=0.098 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHhhc-ccCHHHHHHHHHHHHHHHHHHH
Q 026460 9 DDPTKSNEVLVKLADSLKVVNALK-DLRYKAEEAKLIAQLAEME-AIDYGLFKRAYRASLDVSKLLD 73 (238)
Q Consensus 9 ~D~~ka~~l~kel~~L~~~~~~~~-~l~~~~~e~~~l~el~~~~-~~D~e~~~~a~~e~~~l~~~l~ 73 (238)
.|...+.++++++..-...+..|. +|...+++-+.+.++++.- ..-.+.+.++...++..++.++
T Consensus 65 kDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~ 131 (152)
T 4fla_A 65 TDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLA 131 (152)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999988888888776 6788888888888777531 1122344444544544444443
No 15
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=50.20 E-value=24 Score=25.92 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=37.2
Q ss_pred CceeEEEEEEecc---------ccccccccccccceeecCCCCCCCCccce--eEEEeeeC
Q 026460 136 GGVKSATIEFEFE---------YAFGYLSGETGAHCLINFPNGSFPHEATL--ACVDVVPL 185 (238)
Q Consensus 136 ~g~~~~~~~i~g~---------~a~~~l~~e~Gvhr~~~~~~~~~~r~~ts--~~V~v~P~ 185 (238)
+++.++.|.+.|. +.|.|--. .|.|.+..-.++..|...+| ++|.|-+.
T Consensus 30 g~V~kVef~vdg~~vg~dt~apy~~~w~~~-~G~htl~a~AtD~~G~~~tS~~v~vtV~~~ 89 (98)
T 3pe9_A 30 GKISRVDFLVDGEVIGSDREAPYEYEWKAV-EGNHEISVIAYDDDDAASTPDSVKIFVKQA 89 (98)
T ss_dssp SCEEEEEEEETTEEEEEECSSSEEEEEECC-SEEEEEEEEEEETTCCBCCCEEEEEEEECC
T ss_pred CCEEEEEEEECCEEecccccCCEEEEEEcC-CccEEEEEEEEECCCCEEeeeEEEEEECch
Confidence 4599999999884 45555444 89999997778888999988 56665443
No 16
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=42.22 E-value=1.3e+02 Score=24.04 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhcc-cCH---HHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCCCCceEEEecCCCCchHHHHH
Q 026460 33 DLRYKAEEAKLIAQLAEMEA-IDY---GLFKRAYRASLDVSKLLDQYE-MSKLLRGPNDVEGASVTIKAGSNGICPEIWA 107 (238)
Q Consensus 33 ~l~~~~~e~~~l~el~~~~~-~D~---e~~~~a~~e~~~l~~~l~~le-~~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa 107 (238)
+++.-+.-+..+.+++.... .++ +..+.+......+...++.+. ...+..+........ ..-..++
T Consensus 50 elr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~---------~~l~~~l 120 (268)
T 4ew8_A 50 ELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIED---------IRVSDLL 120 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEE---------EEHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeee---------ccHHHHH
Confidence 34444455555566654321 223 234444455555555555543 222222222211111 2234577
Q ss_pred HHHHHHHHHHHHHcCCeEEEE
Q 026460 108 EQLLNMYVRWADKEGYRGRVV 128 (238)
Q Consensus 108 ~~L~~my~~~a~~~g~~~~~~ 128 (238)
..+...|...+..++..+.+-
T Consensus 121 ~~~~~~~~~~~~~~~i~i~~~ 141 (268)
T 4ew8_A 121 LNAQERALKDAQLGGVTLAVE 141 (268)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhhhhccCceEEEE
Confidence 788888888888888877753
No 17
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=39.51 E-value=75 Score=22.47 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 026460 31 LKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (238)
Q Consensus 31 ~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~l 75 (238)
..+++.+++|++.|++.+. -+-.+..+..++..++..+..+
T Consensus 5 ~eeL~~DLeEl~~Ll~~Ak----R~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKST----RKRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999988754 5677888888888888777654
No 18
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=39.32 E-value=1.6e+02 Score=24.14 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCeE
Q 026460 54 DYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125 (238)
Q Consensus 54 D~e~~~~a~~e~~~l~~~l~~le~~ll~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~my~~~a~~~g~~~ 125 (238)
|.|+..++...+...+..+-+|-.. ..|...++ .-.....+=...++..|.++...+-...
T Consensus 105 d~Ell~eL~~~Ck~~qp~i~~Li~e-----~~ddee~L------~elL~~ND~Ln~vl~kY~~~~~g~~~~~ 165 (186)
T 1oxz_A 105 SEDLMKELYQRCERMRPTLFRLASD-----TEDNDEAL------AEILQANDNLTQVINLYKQLVRGEEVNG 165 (186)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH-----CCSCHHHH------HHHHHHHHHHHHHHHHHTTHHHHCC---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-----ccCCHHHH------HHHHHhhHHHHHHHHHHHHHhcCCCCCc
Confidence 6788888888888887766554211 11211122 0123344556667777877766553333
No 19
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.82 E-value=68 Score=30.27 Aligned_cols=44 Identities=9% Similarity=-0.048 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEE
Q 026460 100 GICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATI 143 (238)
Q Consensus 100 G~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~ 143 (238)
+.++..+...++++|..+.+.-|+.+.++....++.++..+-++
T Consensus 309 pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~ty 352 (485)
T 3qne_A 309 PEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKY 352 (485)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhhe
Confidence 46788889999999999999999999999999888765433333
No 20
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.30 E-value=69 Score=24.70 Aligned_cols=25 Identities=0% Similarity=-0.012 Sum_probs=21.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 52 AIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 52 ~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
..|.++......|++.|.++|..+.
T Consensus 32 rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 32 VEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999887764
No 21
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=34.57 E-value=99 Score=28.02 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 026460 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIA---QLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (238)
Q Consensus 12 ~ka~~l~kel~~L~~~~~~~~~l~~~~~e~~~l~---el~~~~~~D~e~~~~a~~e~~~l~~~l~~l 75 (238)
.+..+-..+|..+-..++.|+.....++++.+|+ +|.++ -.+.++.+..++..++..+..+
T Consensus 32 ~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~---a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 32 QSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEM---AKAEREALLARKEALEKELERH 95 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667888888889999998888888888776 33222 2334556677777777655443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.33 E-value=1.7e+02 Score=26.97 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026460 55 YGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 55 ~e~~~~a~~e~~~l~~~l~~le 76 (238)
.+...++.+|...+++++.+++
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666665554
No 23
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=33.32 E-value=28 Score=25.44 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=10.7
Q ss_pred CcCCCCHHHHHHHHHHHHhH
Q 026460 5 YNLWDDPTKSNEVLVKLADS 24 (238)
Q Consensus 5 p~~w~D~~ka~~l~kel~~L 24 (238)
|.+|++++.+.++...+..|
T Consensus 56 p~iw~~~~~F~~l~~~~~~l 75 (106)
T 3de8_A 56 PEMHDFRHGFDILVGQIHDA 75 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 55666666665544444433
No 24
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=33.29 E-value=1.8e+02 Score=23.12 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 026460 54 DYGLFKRAYRASLDVSKLLDQY 75 (238)
Q Consensus 54 D~e~~~~a~~e~~~l~~~l~~l 75 (238)
|.|+..++...+.+.+..+-+|
T Consensus 89 d~Ell~eL~~~Ck~~qp~i~~L 110 (158)
T 1naf_A 89 SEDLMKELYQRCERMRPTLFRL 110 (158)
T ss_dssp CTTHHHHHHHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888877666553
No 25
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=32.48 E-value=77 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026460 3 RNYNLWDDPTKSNEVLVKLAD 23 (238)
Q Consensus 3 ~~p~~w~D~~ka~~l~kel~~ 23 (238)
+.|.+|.|++++.++...+..
T Consensus 67 A~p~IW~~~~~F~~~~~~~~~ 87 (125)
T 1mqv_A 67 ALPKIFEDKAKFDDLFAKLAA 87 (125)
T ss_dssp BCGGGGGSHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHH
Confidence 469999999999888877653
No 26
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.79 E-value=3.3e+02 Score=25.54 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=10.9
Q ss_pred CCCCCcCCCCH---HHHHHHHH
Q 026460 1 MVRNYNLWDDP---TKSNEVLV 19 (238)
Q Consensus 1 ~~~~p~~w~D~---~ka~~l~k 19 (238)
||.|.++.-+. +..++-++
T Consensus 6 mmldi~~~r~~~~~~~v~~~~~ 27 (484)
T 3lss_A 6 MVLDIQLFRDETGANIIRESQR 27 (484)
T ss_dssp CCCCGGGGGSHHHHHHHHHHHH
T ss_pred ccccHHHHHcCCCHHHHHHHHH
Confidence 67888887433 44444333
No 27
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.94 E-value=1.2e+02 Score=21.12 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--cCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 31 LKDLRYKAEEAKLIAQLAEMEA--IDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 31 ~~~l~~~~~e~~~l~el~~~~~--~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
++++-=.++|++.++.+..... .-+++.+.+.+.+..+++++.+|+
T Consensus 12 lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~ 59 (99)
T 1q08_A 12 ARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQ 59 (99)
T ss_dssp HHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335667777776542111 123566677777777776666554
No 28
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=26.55 E-value=2.2e+02 Score=21.84 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCC-------CCCceEEE
Q 026460 24 SLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMS--KLLRGPND-------VEGASVTI 94 (238)
Q Consensus 24 L~~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le~~--ll~~~~~D-------~~~~~leI 94 (238)
...+++.+++|.....+...-++-+.+.-.|++++....+-...-...+.+|... .+-..|.+ -...|+.|
T Consensus 9 ~~~~i~~Ln~Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~~hr~~~~l 88 (153)
T 4etr_A 9 LDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDL 88 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4566666776666666665555544444568888888877777777667776532 23222322 23477888
Q ss_pred ecCCCCc--hH----HHHH-HHHHHHHHHHHH
Q 026460 95 KAGSNGI--CP----EIWA-EQLLNMYVRWAD 119 (238)
Q Consensus 95 ~aG~GG~--Ea----~~fa-~~L~~my~~~a~ 119 (238)
++-.+|. ++ +... ...++.|....+
T Consensus 89 ks~~~~~~~~~iL~~~~~gE~~~~~~Y~~al~ 120 (153)
T 4etr_A 89 KSLVTGKDEEAVLNECERGEDVAKHRYQAALE 120 (153)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776543 22 1122 234566766654
No 29
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=25.66 E-value=60 Score=24.89 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=16.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026460 3 RNYNLWDDPTKSNEVLVKLAD 23 (238)
Q Consensus 3 ~~p~~w~D~~ka~~l~kel~~ 23 (238)
+.|.+|.|++++.+....+..
T Consensus 73 Akp~IW~~~~~F~~~~~~~~~ 93 (131)
T 3vrc_A 73 AKPELFQNLEDVGKLARDLGT 93 (131)
T ss_dssp BCGGGGGCHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHH
Confidence 359999999999888776553
No 30
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=25.38 E-value=2.4e+02 Score=21.91 Aligned_cols=50 Identities=14% Similarity=-0.032 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026460 26 KVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYE 76 (238)
Q Consensus 26 ~~~~~~~~l~~~~~e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~le 76 (238)
++.+.|.-+.....-+..+.-++. ...|+|++..++.-++.+.+.++.++
T Consensus 18 E~~~lW~~l~~~~~~i~~~~~f~~-~~~D~elk~iL~~~~~~~~~~i~~l~ 67 (171)
T 2rbd_A 18 EVFSTWTYLSTNNGLINGYRSFIN-HTGDEDLKNLIDEAIQAMQDENHQLE 67 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444433333333 24699999999999888888877765
No 31
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=25.32 E-value=39 Score=25.55 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=14.4
Q ss_pred HHHHHHcCCeEEEEecc
Q 026460 115 VRWADKEGYRGRVVDKC 131 (238)
Q Consensus 115 ~~~a~~~g~~~~~~~~~ 131 (238)
..||+++||.+.|.+-.
T Consensus 73 iayAek~G~~y~V~ep~ 89 (108)
T 2lju_A 73 IAYAVAHKIDYTVLQDN 89 (108)
T ss_dssp HHHHHHTTCEEEEECSS
T ss_pred HHHHHHcCCEEEEecCC
Confidence 48999999999998643
No 32
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=25.12 E-value=1.9e+02 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Q 026460 40 EAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLD 73 (238)
Q Consensus 40 e~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~ 73 (238)
....|.+++.....+++.+.+|.+.+..|.....
T Consensus 99 ~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~e 132 (197)
T 3tuf_A 99 EREELNAIVSSDDATAKEKSEAYDKMTALSEVEG 132 (197)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555555445578999999999988876553
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=23.61 E-value=1.4e+02 Score=28.31 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEEEE
Q 026460 102 CPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATI 143 (238)
Q Consensus 102 Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~ 143 (238)
++......++++|.++.+.-|+.+.++....++.|+..+-++
T Consensus 399 ~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgdlg~~a~~~y 440 (536)
T 3err_A 399 ASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQV 440 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCChhhee
Confidence 788888999999999999999999999999998776444433
No 34
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=22.17 E-value=1.4e+02 Score=22.37 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=15.0
Q ss_pred CCCcCCCCHHHHHHHHHHHH
Q 026460 3 RNYNLWDDPTKSNEVLVKLA 22 (238)
Q Consensus 3 ~~p~~w~D~~ka~~l~kel~ 22 (238)
+.|.+|.|++++..+...+.
T Consensus 68 A~p~IW~~~~~F~~~~~~~~ 87 (127)
T 2ykz_A 68 ARPEIWSDAASFKQKQQAFQ 87 (127)
T ss_dssp BCTHHHHCHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHH
Confidence 35788989888887776654
No 35
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=21.71 E-value=1.7e+02 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.1
Q ss_pred CCCcCCCCHHHHHHHHHHHH
Q 026460 3 RNYNLWDDPTKSNEVLVKLA 22 (238)
Q Consensus 3 ~~p~~w~D~~ka~~l~kel~ 22 (238)
+.|.+|.|++++.++...+.
T Consensus 71 A~p~IW~~~~~F~~~~~~~~ 90 (129)
T 2j8w_A 71 AKPAVWSDAAGFKAAADKFA 90 (129)
T ss_dssp BCTHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHH
Confidence 46889999999988877655
No 36
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.69 E-value=1.5e+02 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCceeEE
Q 026460 103 PEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSA 141 (238)
Q Consensus 103 a~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~ 141 (238)
+..+...++++|..+.+.-|+.+.++....++.|+..+-
T Consensus 335 s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~ 373 (484)
T 3lss_A 335 SWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAK 373 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchhh
Confidence 888889999999999999999999999999887654333
No 37
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=21.45 E-value=1.7e+02 Score=24.17 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCeEEEEeccccCCCceeEEEEEEecc
Q 026460 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFE 148 (238)
Q Consensus 111 ~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~g~ 148 (238)
|..-.....++||+++-+...+.+..|+...+|.++|+
T Consensus 43 LaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~ 80 (193)
T 2fgc_A 43 MRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80 (193)
T ss_dssp HHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC
Confidence 33344566689999998888888778999999999985
No 38
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.83 E-value=1.5e+02 Score=27.91 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHHHHHcCCeEEEEeccccCCCcee
Q 026460 101 ICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVK 139 (238)
Q Consensus 101 ~Ea~~fa~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~ 139 (238)
+++..+...++.+|.++.+.-|+.+.++....++.|+..
T Consensus 345 e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a 383 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPA 383 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCch
Confidence 488889999999999999999999999998888776533
No 39
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.28 E-value=97 Score=18.86 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=11.8
Q ss_pred CCcCCCCHHHHHHHHHHHH
Q 026460 4 NYNLWDDPTKSNEVLVKLA 22 (238)
Q Consensus 4 ~p~~w~D~~ka~~l~kel~ 22 (238)
|.++|||..-.+..-|..+
T Consensus 5 dSDiWDdtALIKayDKAVa 23 (37)
T 3s6n_M 5 DSDIWDDTALIKAYDKAVA 23 (37)
T ss_pred chhhhhhHHHHHHHHHHHH
Confidence 6789999875444444433
No 40
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.15 E-value=2.1e+02 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=16.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHh
Q 026460 3 RNYNLWDDPTKSNEVLVKLAD 23 (238)
Q Consensus 3 ~~p~~w~D~~ka~~l~kel~~ 23 (238)
.||=+|-||..++.+.+.+++
T Consensus 130 ~DPH~Wldp~~~~~~a~~I~~ 150 (291)
T 1pq4_A 130 ADPHIWLSPTLVKRQATTIAK 150 (291)
T ss_dssp BCCCGGGCHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHH
Confidence 389999999999887776543
No 41
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=20.15 E-value=1.5e+02 Score=22.87 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=37.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 026460 3 RNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEE-AKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQY 75 (238)
Q Consensus 3 ~~p~~w~D~~ka~~l~kel~~L~~~~~~~~~l~~~~~e-~~~l~el~~~~~~D~e~~~~a~~e~~~l~~~l~~l 75 (238)
++++. .|+...+.+.+++..+..-+......-..+.. ...|++ . .+.-...+...+..+....+.|
T Consensus 80 ~~~~~-~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~---~---~~~~~~~I~~rl~eL~~~W~~L 146 (161)
T 3lbx_A 80 TDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT---M---GHSAHEETKAHIEELRHLWDLL 146 (161)
T ss_dssp HTTSC-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---T---TCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c---CCCchHHHHHHHHHHHHHHHHH
Confidence 35555 78888888888888888888776644444333 334432 1 2222344444455554444443
No 42
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=20.01 E-value=2.5e+02 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=16.0
Q ss_pred CCcCCCCHHHHHHHHHHHH
Q 026460 4 NYNLWDDPTKSNEVLVKLA 22 (238)
Q Consensus 4 ~p~~w~D~~ka~~l~kel~ 22 (238)
||-+|-||..++.+.+.+.
T Consensus 129 DPHvWldp~n~~~~a~~I~ 147 (307)
T 3ujp_A 129 NPHAWMSPRNALVYVENIR 147 (307)
T ss_dssp CCCCTTCHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 8999999999988777654
Done!