RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 026460
         (238 letters)



>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
           2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
           2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
          Length = 365

 Score =  135 bits (342), Expect = 3e-38
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 27/238 (11%)

Query: 6   NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
           +LW+DP  + +V  + A   + V+  + L    +    + +    E     L        
Sbjct: 37  SLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE-REALKPEL---- 91

Query: 66  LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
            + +K LD+     LL  P+  + A +TI+ G+ G     WAE LL MY R+A+++G++ 
Sbjct: 92  EEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQV 151

Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNG-----SFPHEATL 177
            VVD       G+  A I  + E A+G LS E G H L+    F        SF      
Sbjct: 152 EVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSF------ 205

Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAK--PAACIQHIPTGIAV 230
           A V+V+P  ++   ++ +  E+L   +  + S PG  Q +     A  + H+PTGI V
Sbjct: 206 AGVEVIPE-VDEEVEVVLKPEELRIDVMRA-SGPGG-QGVNTTDSAVRVVHLPTGITV 260


>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
           mimicry, translation; 1.81A {Escherichia coli} SCOP:
           e.38.1.1 PDB: 1mi6_A 1ml5_Z*
          Length = 365

 Score =  134 bits (340), Expect = 7e-38
 Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 23/238 (9%)

Query: 6   NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
           ++W++P ++  +  + +    VV+ L  ++   E+   + +LA     D   F  A    
Sbjct: 45  DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEAD-DEETFNEAVAEL 103

Query: 66  LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
             + + L Q E  ++  G  D     + I+AGS G   + WA  L  MY+RWA+  G++ 
Sbjct: 104 DALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 163

Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN---FPNG-----SFPHEATL 177
            ++++   +  G+KS TI+   +YA+G+L  ETG H L+    F +G     SF      
Sbjct: 164 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSF------ 217

Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAK--PAACIQHIPTGIAV 230
           +   V P  ++   D++I+  DL   ++ +    G  Q + +   A  I HIPTGI  
Sbjct: 218 SSAFVYPE-VDDDIDIEINPADLRIDVYRASGAGG--QHVNRTESAVRITHIPTGIVT 272


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 64.3 bits (156), Expect = 5e-12
 Identities = 49/224 (21%), Positives = 73/224 (32%), Gaps = 63/224 (28%)

Query: 31  LKDLR-----YKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQ-YEMSKLLRGP 84
            ++LR     Y      LI   AE             R +LD  K+  Q   + + L  P
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAE-------TLSELIRTTLDAEKVFTQGLNILEWLENP 222

Query: 85  NDVEG----ASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYR-GRVVDKCCCKNG--- 136
           ++        S+ I   S   CP I   QL + YV  A   G+  G +        G   
Sbjct: 223 SNTPDKDYLLSIPI---S---CPLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQ 275

Query: 137 GVKSATI--------EFE------FEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDV 182
           G+ +A           F           F ++    G  C   +PN S P       ++ 
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLF-FI----GVRCYEAYPNTSLPPSILEDSLEN 330

Query: 183 ---VPLFLETSPDLQISDEDL--LFS-----SPSLPGERQ-SIA 215
              VP     SP L IS+     +       +  LP  +Q  I+
Sbjct: 331 NEGVP-----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369



 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 48/176 (27%)

Query: 43  LIAQLAEMEAID----YGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKA-- 96
           L A+L +           L K    A +   +  D+   S L R    V   +  + A  
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA---VGEGNAQLVAIF 160

Query: 97  GSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSG 156
           G  G   + + E+L ++Y      + Y   V D                  +++   LS 
Sbjct: 161 GGQGN-TDDYFEELRDLY------QTYHVLVGD---------------L-IKFSAETLSE 197

Query: 157 --ETGAHCLINFPNGSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSP-SLPG 209
              T       F  G          ++++  +LE  P     D+D L S P S P 
Sbjct: 198 LIRTTLDAEKVFTQG----------LNILE-WLEN-PS-NTPDKDYLLSIPISCPL 240



 Score = 26.6 bits (58), Expect = 9.2
 Identities = 10/88 (11%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 18   LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEM 77
            L  LAD + + + ++ + Y+    ++     E+   +YG+       +++  +      +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM------IAINPGR------V 1817

Query: 78   SKLLRGPNDVEGASVTIKAGSNGICPEI 105
            +        ++     +   +  +  EI
Sbjct: 1818 AASF-SQEALQYVVERVGKRTGWLV-EI 1843


>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
           release factor 1, ribosome, structural genomics, BSGC
           structure funded by NIH; 2.65A {Thermotoga maritima}
           SCOP: e.38.1.1 PDB: 2fvo_A
          Length = 342

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 33/236 (13%)

Query: 10  DPTKSNEVLVKL----ADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
            P  + E +       A   ++ N    ++ + +E   I  L E    +  + K      
Sbjct: 14  RPDLTPEQMKNYGMEYAKIEEIENITNRIK-ETQEF--IELLREEGENELEIEKYE---- 66

Query: 66  LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
               +L   Y+    L  P   + A V I+ G+ G    ++A  L  MY R+A+++G+  
Sbjct: 67  ---KELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNL 123

Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA-----TLAC- 179
            V +      GG++      + + A+G L  E+G H +   P      E+     T    
Sbjct: 124 EVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVT----ESGGRIHTSTAT 179

Query: 180 VDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAK--PAACIQHIPTGIAV 230
           V V+P   E   D++I  EDL    F + S  G  Q + K   A  I H+PTGI V
Sbjct: 180 VAVLPEIEEK--DIEIRPEDLKIETFRA-SGHGG-QYVNKTESAVRITHLPTGIVV 231


>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
           ribosomal protein, RNA-binding, binding, metal-binding,
           zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
           3d5c_X 3mr8_V 3ms0_V
          Length = 354

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 26/223 (11%)

Query: 21  LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80
           + + + ++   + +    E+A+ +    E++     + K    A L   + L++ E+ + 
Sbjct: 41  MGEVIGLIREYRKVLEDLEQAESLLDDPELKE----MAKAEREALLARKEALEK-ELERH 95

Query: 81  L--RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGV 138
           L  + P D   A V I+AG+ G    ++A  L NMY+R+A++ G+   V+D      GG 
Sbjct: 96  LLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGF 155

Query: 139 KSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA-----TLAC-VDVVPLFLETSPD 192
                E     A+G    E+G H +   P      E      T    V V+P   E   D
Sbjct: 156 SKVVFEVRGPGAYGTFKYESGVHRVQRVPVT----ETQGRIHTSTATVAVLPKAEEE--D 209

Query: 193 LQISDEDL---LFSSPSLPGERQSIAK--PAACIQHIPTGIAV 230
             ++ +++   +  + S PG  Q +     A  + H+PTGI V
Sbjct: 210 FALNMDEIRIDVMRA-SGPGG-QGVNTTDSAVRVVHLPTGIMV 250


>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
           1 (RF-1), structural joint center for structural
           genomics, JCSG; 2.34A {Streptococcus mutans}
          Length = 371

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 21/168 (12%)

Query: 76  EMSKLL--RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCC 133
           ++  LL  + PND +   + I+  + G    ++A  LLNMY ++A+ +G++  V++    
Sbjct: 109 KLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASAN 168

Query: 134 KNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA-----TLAC-VDVVPLFL 187
             GG+K        +  +  L  E+GAH +   P      E+     T    V V+P   
Sbjct: 169 GVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVT----ESQGRVHTSTATVLVMPEVE 224

Query: 188 ETSPDLQISDEDL---LFSSPSLPGERQSIAK--PAACIQHIPTGIAV 230
           E   + +I  +DL   ++ + S  G  Q++ K   A  I H+PT I V
Sbjct: 225 EV--EYEIDPKDLRVDIYHA-SGAGG-QNVNKVATAVRIIHLPTNIKV 268


>2b3t_B RF-1, peptide chain release factor 1; translation termination,
           methylation, conformational changes; HET: SAH; 3.10A
           {Escherichia coli} SCOP: e.38.1.1
          Length = 360

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 25/223 (11%)

Query: 21  LADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKL 80
           L+D  +     + ++   E A+++    EM      + +   R + + S+ L+Q ++  L
Sbjct: 45  LSDVSRCFTDWQQVQEDIETAQMMLDDPEMRE----MAQDELREAKEKSEQLEQ-QLQVL 99

Query: 81  L--RGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGV 138
           L  + P+D   A + ++AG+ G    ++A  L  MY R+A+   +R  ++     ++GG 
Sbjct: 100 LLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGY 159

Query: 139 KSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEA-----TLAC-VDVVPLFLETSPD 192
           K    +   +  +G L  E+G H +   P      E+     T AC V V+P   +    
Sbjct: 160 KEIIAKISGDGVYGRLKFESGGHRVQRVPAT----ESQGRIHTSACTVAVMPELPDAE-L 214

Query: 193 LQISDEDL---LFSSPSLPGERQSIAK--PAACIQHIPTGIAV 230
             ++  DL    F S S  G  Q +     A  I H+PTGI V
Sbjct: 215 PDVNPADLRIDTFRS-SGAGG-QHVNTTDSAIRITHLPTGIVV 255


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.0 bits (74), Expect = 0.041
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 8/34 (23%)

Query: 18 LVKLADSLKVVNALKDLRYKAEEAKLIAQLAEME 51
          L KL  SLK+        Y  + A  +A  A ME
Sbjct: 22 LKKLQASLKL--------YADDSAPALAIKATME 47



 Score = 29.1 bits (64), Expect = 0.88
 Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 210 ERQSIAKPAACIQ-HIPT---GIAVRGT 233
           E+Q++ K  A ++ +       +A++ T
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKAT 45


>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
           hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
           c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
          Length = 482

 Score = 33.3 bits (77), Expect = 0.066
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 20/76 (26%)

Query: 29  NALKDLRYKAEEAKLIAQLAEMEA-IDY---------GLFKRAYRASLDVSKLLDQYEMS 78
           + +  LR      +LI  LAE+   +DY          +  R  R    +++ L + +  
Sbjct: 183 DFVDSLR-----RELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTEELKKADAG 237

Query: 79  KLLRGPNDVEGASVTI 94
            LL       G  + I
Sbjct: 238 ILLN-----RGLRMVI 248


>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
           HYDR magnesium, metal-binding, nucleotide-binding,
           potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
           SP}
          Length = 462

 Score = 32.9 bits (76), Expect = 0.088
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 21/77 (27%)

Query: 29  NALKDLRYKAEEAKLIAQLAEMEA-IDY----------GLFKRAYRASLDVSKLLDQYEM 77
           + ++ LR     A  +  LAE+EA ID+           +       + ++S+LL   + 
Sbjct: 163 HPIRQLR-----ANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDK 217

Query: 78  SKLLRGPNDVEGASVTI 94
            +LLR      G  V I
Sbjct: 218 GELLR-----TGLKVAI 229


>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
           binding, hydrolase, magnesium, metal-binding,
           nucleotide- binding, potassium; HET: GDP FON; 2.95A
           {Chlorobium tepidum} PDB: 3gei_A*
          Length = 476

 Score = 32.1 bits (74), Expect = 0.15
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 22/78 (28%)

Query: 29  NALKDLRYKAEEAKLIAQLAEMEA-IDY-----------GLFKRAYRASLDVSKLLDQYE 76
             L  LR      +LI   A +E  +D+            L  +      +V++L+D Y+
Sbjct: 171 VRLGGLR-----EQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQ 225

Query: 77  MSKLLRGPNDVEGASVTI 94
             +++      EG S  I
Sbjct: 226 HGRIVS-----EGVSTVI 238


>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
           2.95A {Clostridium perfringens}
          Length = 560

 Score = 28.5 bits (63), Expect = 2.1
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 163 LINFPNGSFPHEATLACVDVVPLFLETSPDLQISDE 198
           +++  N ++  +  L  V ++PL  E  P L   D 
Sbjct: 164 VVDMGNKNYKTKLDLNSVRIIPLV-EDVPALANIDR 198


>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
           GGQ domain, translation; NMR {Mus musculus}
          Length = 115

 Score = 26.5 bits (59), Expect = 4.4
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 178 ACVDVVPLFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAAC--IQHIPTGIAV 230
           + V V     +    L +++ +L          PG  Q+  K + C  ++H+P+GI V
Sbjct: 27  STVQVAGR-KDYPALLPLNESELEEQFVKG-HGPGG-QATNKTSNCVVLKHVPSGIVV 81


>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
           {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
           3jqp_A*
          Length = 316

 Score = 27.1 bits (60), Expect = 5.0
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 11/108 (10%)

Query: 111 LNMYVRWADKEGYRGRVVDKCCCKNGGVKSAT--IEFEFEYAFGYLSGETGAHCLINFPN 168
           +N+Y     K   + ++VDK         +    +E      F YL G T          
Sbjct: 7   INLYTV---KNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNEL 63

Query: 169 GSFPHEATLACVDVVPLFLETSPDLQISDEDLLFSSPSLPGERQ-SIA 215
            + P+       +++     T+ +                  R  SI+
Sbjct: 64  DNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCA-----RLYSIS 106


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 5.6
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 7   LWDDPTKSN--EVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRA 64
           +W D  KS+   V+ KL     V    K+          I  +     ++    K     
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------IPSIY----LEL-KVKLENEY 443

Query: 65  SLDVSKLLDQYEMSK 79
           +L    ++D Y + K
Sbjct: 444 ALH-RSIVDHYNIPK 457


>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
           oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
           3u33_A*
          Length = 541

 Score = 26.6 bits (59), Expect = 9.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 134 KNGGVKSATIEFEFEYAFGYLSGETG 159
           K G   +A+ E EF+ A G+L G  G
Sbjct: 260 KLGNRSNASCEVEFQDAIGWLLGLEG 285


>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation,
           transferase; HET: ATP; 3.00A {Geobacillus
           stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB:
           1miv_A* 1miy_A*
          Length = 404

 Score = 26.5 bits (59), Expect = 9.8
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 76  EMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLL 111
           EM KLL GP       +  + G N   P +  ++  
Sbjct: 198 EMEKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQ 233


>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
           hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
           2gk7_A 2xzo_A* 2xzp_A
          Length = 624

 Score = 26.3 bits (58), Expect = 9.9
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 50  MEAIDYG----LFKRAYRASLDVSKLLDQYEM-SKLLRGPND 86
            +A   G    LF+R     +   +L  QY M   L   P++
Sbjct: 383 KKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN 424


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,689,206
Number of extensions: 222977
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 30
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)