RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026460
(238 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 102 bits (256), Expect = 2e-26
Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 5/237 (2%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
++W++P ++ + + + VV+ L ++ E+ + +LA + F A
Sbjct: 42 DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEE-TFNEAVAEL 100
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+ + L Q E ++ G D + I+AGS G + WA L MY+RWA+ G++
Sbjct: 101 DALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 160
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLIN-FPNGSFPHEATLACVDVVP 184
++++ + G+KS TI+ +YA+G+L ETG H L+ P S T V
Sbjct: 161 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVY 220
Query: 185 LFLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVRGTTLQIR 238
++ D++I+ DL ++ + G+ + + A I HIPTGI + + +
Sbjct: 221 PEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQ 277
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 82.8 bits (204), Expect = 3e-19
Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 4/235 (1%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
D + + + A V D + E+ + + + + A
Sbjct: 17 QTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAK 76
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+L Q ++ L + P+D A + ++AG+ G ++A L MY R+A+ +R
Sbjct: 77 EKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRV 136
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPL 185
++ ++GG K + + +G L E+G H + P + V +
Sbjct: 137 EIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVM 196
Query: 186 FLETSPDLQISDEDLL----FSSPSLPGERQSIAKPAACIQHIPTGIAVRGTTLQ 236
+L + L F S G+ + A I H+PTGI V +
Sbjct: 197 PELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDER 251
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 65.9 bits (160), Expect = 2e-13
Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 9/229 (3%)
Query: 6 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRAS 65
L P + E + + ++++ + +E + +L E + ++
Sbjct: 10 KLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYE--- 66
Query: 66 LDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRG 125
+L Y+ L P + A V I+ G+ G ++A L MY R+A+++G+
Sbjct: 67 ---KELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNL 123
Query: 126 RVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHCLINFPNGSFPHEATLACVDVVPL 185
V + GG++ + + A+G L E+G H + P + V L
Sbjct: 124 EVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVL 183
Query: 186 FLETSPDLQISDEDL---LFSSPSLPGERQSIAKPAACIQHIPTGIAVR 231
D++I EDL F + G+ + + A I H+PTGI V
Sbjct: 184 PEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVS 232
>d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 485
Score = 26.3 bits (56), Expect = 4.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 5 YNLWDDPTKSNEVLVKLADSLK-VVNALKDLR 35
Y+L DP ++ +L +A + V+ ALK L+
Sbjct: 411 YDLSKDPGENYNLLGGVAGATPEVLQALKQLQ 442
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 115
Score = 24.7 bits (54), Expect = 6.2
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 12 TKSNEVLVKLADSLKVVNALKDLRYKAEEAKLIAQLAEMEAIDYGLFKRAYRASLDVSKL 71
+K+N L L LK +A+ E R A +++ ++
Sbjct: 1 SKTNPRLSSLIADLKSAAR----SSGGAVWGDVAERLEKP--------RRTHAEVNLGRI 48
Query: 72 LDQYEMSKLLRGPNDVEG-----ASVTIKA 96
+ + + P V G VT+ A
Sbjct: 49 ERYAQEDETVVVPGKVLGSGVLQKDVTVAA 78
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 24.2 bits (52), Expect = 8.1
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 60 RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQL 110
+ R + + L ++ + + P VT + ++G+ + A +
Sbjct: 51 QGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLL-SVTAMEK 100
>d1xnta_ b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 151
Score = 24.7 bits (54), Expect = 8.9
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 130 KCCCKNGGVKSATIEFEFEYA 150
K G K+ ++ + E
Sbjct: 32 KWRAAKAGEKTISVVLQLEKE 52
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
transactivation domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 239
Score = 24.8 bits (54), Expect = 10.0
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 15/45 (33%)
Query: 172 PHEATLACVDVVPLF---------------LETSPDLQISDEDLL 201
P L V VVP LE + DL IS+ L
Sbjct: 169 PWTKRLVMVKVVPTCLRALVEMARVGGASSLENTVDLHISNSHPL 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 891,235
Number of extensions: 41160
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 9
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)