BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026461
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 319 bits (817), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 150/232 (64%), Positives = 189/232 (81%), Gaps = 1/232 (0%)
Query: 7 QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
+ + GLLQSE+L +YIL TSVYPRE LK++R+ HP + M T+P AGQLM+ +L
Sbjct: 7 KQVKNTGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVL 66
Query: 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIGLP I+KAGV+HKINF
Sbjct: 67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126
Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
IES+A+ LD LL+ E+EGS+D+ FVDADK NY YHERLMKL+KVGGI YDNTLWGG
Sbjct: 127 IESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGG 186
Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238
TVA PE +VPD F +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR++
Sbjct: 187 TVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRLY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 297 bits (761), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 137/231 (59%), Positives = 181/231 (78%)
Query: 7 QAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLL 66
Q K LLQS+ LY+YILETSV+PRE E +K++R+VTA HPW +M T+ D GQ ++MLL
Sbjct: 16 QEVGHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLL 75
Query: 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKAGVDHKI+F
Sbjct: 76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDF 135
Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
E AL VLD+++K +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+ YDNTLW G
Sbjct: 136 REGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNG 195
Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
+V P + + R +L+LN++LA DPR+++ + +GDGITICRRI
Sbjct: 196 SVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 126/229 (55%), Gaps = 15/229 (6%)
Query: 12 KGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
K L + +LY+Y+L+ S+ RE L +R T+ A M AP+ Q M ML+RL A
Sbjct: 4 KHLSLTPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRA 61
Query: 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131
KK +E+G FTGYS L +L +P+DGQ+ D+N + P ++A +HKI A
Sbjct: 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121
Query: 132 LSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 188
L L LL NEG FD+ F+DADK NY NY+E +KL+ G+ DN W G V
Sbjct: 122 LDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKV 177
Query: 189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
P + G +R+ I LN+ + +D RV +S +A+ DG+ + + I
Sbjct: 178 IDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 111/200 (55%), Gaps = 11/200 (5%)
Query: 37 LKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG 96
L ++R TA P A M +P+ Q + +L+ L AK+ +EIGVF GYS L AL +P DG
Sbjct: 39 LAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDG 98
Query: 97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 156
QI A D + I +KAGV KI+ AL+ L+QL + + FD F+DAD
Sbjct: 99 QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDAD 157
Query: 157 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSL 214
K NY Y+E + LL+ GG+ V DN LW G V P+E + Q + NR L
Sbjct: 158 KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDL 209
Query: 215 ADDPRVQLSHVALGDGITIC 234
A D RV++S + LGDG+T+
Sbjct: 210 AQDERVRISVIPLGDGMTLA 229
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 11/226 (4%)
Query: 14 LLQSED--LYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
LL ED L++Y+L S+ RE L+ +R +T + P + QL+A L RL+ A
Sbjct: 13 LLPPEDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQA 70
Query: 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131
KK +++G FTGYS L AL +P DG++ +V+ + E+G P+ ++A +HKI+ A
Sbjct: 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA 130
Query: 132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP 191
L LD+LL E G+FD A VDADK+N Y+ER ++LL+ GGI LW G V P
Sbjct: 131 LETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQP 189
Query: 192 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237
+ + + + +LN + D RV +S + LGDG+T+ +I
Sbjct: 190 PKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 10/230 (4%)
Query: 8 AASSKGLLQSEDLYRYILETSVYPREPEPLKKIRD-VTADHPWAMMGTAPDAGQLMAMLL 66
A S L + +LY+Y+L+ S+ REP L ++R+ T TAP+ QL+A+L+
Sbjct: 3 AXSINTTLLTPELYQYLLQVSL--REPPLLAELREETTRSFSTYAXQTAPEQAQLLALLV 60
Query: 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126
+L AKK I+IG FTGYS + L +P+DG + DV+ ++ + +KAG+ KI
Sbjct: 61 KLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGL 120
Query: 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186
S A L +L+ ++ +D ++DADK N Y+E +KLL+ GG+ DN L G
Sbjct: 121 RLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRG 179
Query: 187 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
VA E Q ++ Q I N+ + D RV + +GDG+T+ R+
Sbjct: 180 QVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 123/237 (51%), Gaps = 18/237 (7%)
Query: 10 SSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLV 69
S K + +E L YI SV REP+ K+R T A M +P+ GQ + +L ++
Sbjct: 2 SRKNISLTESLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKIS 59
Query: 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129
AK+ IEIG FTGYS L A +PEDG+I DV+ E + K+ G+++KI
Sbjct: 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG 119
Query: 130 EALSVLDQLL----------KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179
AL L L+ ++ S D F+DADK+NY NY+ ++KLLK GG+ +
Sbjct: 120 SALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIA 179
Query: 180 DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 236
DN LW G+VA Q P S I N + +D V +S V + DG+++ R+
Sbjct: 180 DNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVDVSLVPIADGVSLVRK 230
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 114
A + GQ +A+L+RL AK+ +EIG GYS + A +P DGQ+ ++ + ++
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 115 IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 174
++ AGVD ++ E AL L+ L + +FD F+DADK N +Y ++ + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 175 GIAVYDNTLWGGTVAVPE 192
+ + DN + G V P+
Sbjct: 164 TLIIGDNVVRDGEVVNPQ 181
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 37 LKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG 96
L+++ V A +P G+ + +L+++ A+ +EIG GYS + A + G
Sbjct: 25 LEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG 84
Query: 97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVD 154
++ ++ + + +I I++A ++ ++ AL L Q+ ENE FD+ F+D
Sbjct: 85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFID 140
Query: 155 ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRS 213
ADK N Y E +KL + G + + DN V E +V D+ R Q I
Sbjct: 141 ADKQNNPAYFEWALKLSRPGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYEL 193
Query: 214 LADDPRV 220
+A +PRV
Sbjct: 194 IAAEPRV 200
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 124
LL+ + +EIG GYS + A +PE I +I+ + YE +K G++ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 125 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 184
+ +AL + ++L Y FD F+DA K Y + + ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 185 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 234
G VA E +H R +D N+ L + P+ +GDGI I
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 19/198 (9%)
Query: 13 GLLQSEDLYRYILETSVYPREPEP-LKKIRDVTADHPWAM-MGTAPDAGQLMAMLLRLVN 70
G + + + RY+ + + P +P+ L+ I WAM +G A GQ+M ++R +
Sbjct: 2 GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDA--KGQIMDAVIREYS 58
Query: 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
+E+G + GYS + A + ++ +++N + I ++ AG+ K+ +
Sbjct: 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGA 118
Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTV 188
+ ++ QL K + + + D F+D KD Y L K LL+ G + + DN + GT
Sbjct: 119 SQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT- 176
Query: 189 AVPEEQVPD---HFRGSS 203
PD + RGSS
Sbjct: 177 -------PDFLAYVRGSS 187
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 120
L+ L+R N K +EIG GYS A +I +D +T I+ N + +
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 121 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180
++++ IE AL + + N+ +D F+DA K + E LLK G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 181 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 234
N L+ G V+ + R ++ + D N L P + + + DG+ I
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 11 SKGLLQSEDLYRYILETSVYPREPEP-LKKIRDVTADHPWAM-MGTAPDAGQLMAMLLRL 68
S G + + + RY+ + + P +P+ L+ I WAM +G A GQ+M ++R
Sbjct: 2 SMGDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDA--KGQIMDAVIRE 58
Query: 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128
+ +E+G + GYS + A + ++ +++N + I ++ AG+ K+ +
Sbjct: 59 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN 118
Query: 129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGG 186
+ ++ QL K + + + D F+D KD Y L K LL+ G + + DN + G
Sbjct: 119 GASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 177
Query: 187 TVAVPEEQVPD---HFRGSS 203
T PD + RGSS
Sbjct: 178 T--------PDFLAYVRGSS 189
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 19/198 (9%)
Query: 13 GLLQSEDLYRYILETSVYPREPEP-LKKIRDVTADHPWAM-MGTAPDAGQLMAMLLRLVN 70
G + + + RY+ + + P +P+ L+ I WAM +G A GQ+M ++R +
Sbjct: 2 GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDA--KGQIMDAVIREYS 58
Query: 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
+E+G + GYS + A + ++ +++N + I ++ AG+ K+ +
Sbjct: 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA 118
Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTV 188
+ ++ QL K + + + D F+D KD Y L K LL+ G + + DN + GT
Sbjct: 119 SQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT- 176
Query: 189 AVPEEQVPD---HFRGSS 203
PD + RGSS
Sbjct: 177 -------PDFLAYVRGSS 187
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 11 SKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVN 70
S G + + + ++L+ + L+ I WAM G+++ +++
Sbjct: 2 SMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAM-NVGDKKGKIVDAVIQEHQ 60
Query: 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130
+E+G + GYS + A + ++ I++N + I ++ AGV K+ +
Sbjct: 61 PSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGA 120
Query: 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTV 188
+ ++ QL K + + + D F+D KD Y L + LL+ G + + DN + G
Sbjct: 121 SQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA- 178
Query: 189 AVPEEQVPD---HFRGSS 203
PD H RGSS
Sbjct: 179 -------PDFLAHVRGSS 189
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 108
WAM G+++ +++ +E+G + GYS + A + ++ I++N +
Sbjct: 37 WAM-NVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCA 95
Query: 109 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 168
I ++ AGV K+ + + ++ QL K + + + D F+D KD Y L
Sbjct: 96 AITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLE 154
Query: 169 K--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 203
+ LL+ G + + DN + G PD H RGSS
Sbjct: 155 ECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 108
WAM G+++ +++ +E+G + GYS + A + ++ I++N +
Sbjct: 37 WAM-NVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCA 95
Query: 109 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 168
I ++ AG+ K+ + + ++ QL K + + + D F+D KD Y L
Sbjct: 96 AITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLE 154
Query: 169 K--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 203
+ LL+ G + + DN + G PD H RGSS
Sbjct: 155 ECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 31 PRE---PEPLKKIRDVTADHPWAM-MGTAPDAGQLMAMLLRLVNAK---KTIEIGVFTGY 83
PRE PE LK+ V D P + G A ++ M+ L++ K K +EIG GY
Sbjct: 33 PREEFLPEHLKEYAYV--DTPLEIGYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGY 90
Query: 84 SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 127
+TA + EDG + +I+ E E ++K G D+ I +
Sbjct: 91 HAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 60 QLMAMLLRLVNAKK---TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 116
LMA+ + V K +EIG TGY+ + + + E G + +++ +R+ EI ++
Sbjct: 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
Query: 117 KAGVDHKI 124
+ G+++ I
Sbjct: 122 RLGIENVI 129
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132
K +E G G ++ A P D +IT+ID++ E+ E +K G+ + + F+++
Sbjct: 40 KVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIF 97
Query: 133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE---RLMKLLKVGG 175
S+ + + SFD+ FV ++ + E L K+LK GG
Sbjct: 98 SLPFE-------DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGG 136
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Query: 59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 118
G+L+ +L R+ + + G G + A I ++ ID +R+ E +
Sbjct: 45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVXIDPDRDNVEHARRXLHDN 104
Query: 119 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 178
G+ ++ + L + + + D F D D N + ER + L + +
Sbjct: 105 GLIDRVELQVGDPLGI-------AAGQRDIDILFXDCDVFNGADVLERXNRCLAKNALLI 157
Query: 179 YDNTLWGGTVAVPEE 193
N L G+VA E
Sbjct: 158 AVNALRRGSVAESHE 172
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 204 RQAILDLNRSLADDPRVQLSHV 225
RQA+LDL + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
Length = 552
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 25 LETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
+ETS +P P P ++I V + H A + P A L+A ++ LV A
Sbjct: 322 VETSNWP-TPVPPREITCVVSSHASARVEFQPSANALVAGIVELVTA 367
>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
Length = 552
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 25 LETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNA 71
+ETS +P P P ++I V + H A + P A L+A ++ LV A
Sbjct: 322 VETSNWP-TPVPPREITCVVSSHASARVEFQPSANALVAGIVELVTA 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,090,746
Number of Sequences: 62578
Number of extensions: 297900
Number of successful extensions: 806
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 28
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)