Query 026461
Match_columns 238
No_of_seqs 191 out of 2952
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02589 caffeoyl-CoA O-methyl 100.0 5E-41 1.1E-45 274.1 26.4 224 14-237 23-246 (247)
2 PF01596 Methyltransf_3: O-met 100.0 3E-41 6.6E-46 268.8 22.7 199 32-237 6-205 (205)
3 PLN02476 O-methyltransferase 100.0 3.6E-39 7.8E-44 266.1 26.9 215 13-237 64-278 (278)
4 PLN02781 Probable caffeoyl-CoA 100.0 7.5E-39 1.6E-43 261.4 26.5 220 16-237 12-233 (234)
5 COG4122 Predicted O-methyltran 100.0 1.8E-38 3.9E-43 252.6 23.7 214 13-238 5-219 (219)
6 KOG1663 O-methyltransferase [S 100.0 4.5E-38 9.8E-43 247.3 22.1 228 4-237 4-237 (237)
7 PF12847 Methyltransf_18: Meth 99.8 2.5E-18 5.4E-23 124.5 10.3 104 70-181 1-111 (112)
8 PRK13944 protein-L-isoaspartat 99.7 4.2E-17 9.2E-22 130.9 14.2 168 1-181 1-173 (205)
9 COG2242 CobL Precorrin-6B meth 99.7 2.9E-16 6.3E-21 121.2 16.3 121 53-183 17-137 (187)
10 PRK04457 spermidine synthase; 99.7 4.2E-16 9.2E-21 129.4 18.1 118 56-180 52-176 (262)
11 TIGR02469 CbiT precorrin-6Y C5 99.7 2.4E-16 5.2E-21 115.9 13.5 109 64-180 13-121 (124)
12 PRK14901 16S rRNA methyltransf 99.7 3E-16 6.6E-21 139.3 16.1 164 54-238 236-432 (434)
13 PRK08287 cobalt-precorrin-6Y C 99.7 7.9E-16 1.7E-20 121.8 16.7 120 53-183 14-133 (187)
14 PRK14903 16S rRNA methyltransf 99.7 9.1E-16 2E-20 135.8 18.1 126 52-184 219-369 (431)
15 TIGR00080 pimt protein-L-isoas 99.7 4.6E-16 9.9E-21 125.8 14.8 154 13-180 18-176 (215)
16 TIGR00138 gidB 16S rRNA methyl 99.7 5.6E-16 1.2E-20 121.8 14.8 102 68-180 40-141 (181)
17 PRK00377 cbiT cobalt-precorrin 99.7 5.8E-16 1.3E-20 123.6 15.1 112 65-182 35-146 (198)
18 PRK13942 protein-L-isoaspartat 99.7 5.4E-16 1.2E-20 125.0 12.5 118 52-180 58-175 (212)
19 TIGR00446 nop2p NOL1/NOP2/sun 99.7 2.3E-15 5E-20 125.3 16.5 124 52-183 53-201 (264)
20 COG2518 Pcm Protein-L-isoaspar 99.7 3.6E-16 7.8E-21 123.2 11.0 118 49-180 51-168 (209)
21 COG2226 UbiE Methylase involve 99.7 1.7E-15 3.6E-20 122.8 15.1 121 55-184 36-159 (238)
22 PRK00107 gidB 16S rRNA methylt 99.7 1.1E-15 2.4E-20 120.5 13.3 101 70-181 45-145 (187)
23 PLN03075 nicotianamine synthas 99.7 5.9E-16 1.3E-20 129.0 12.3 117 57-181 111-233 (296)
24 PRK00121 trmB tRNA (guanine-N( 99.7 5.8E-16 1.3E-20 124.0 11.8 141 30-180 4-155 (202)
25 PRK14902 16S rRNA methyltransf 99.7 2.3E-15 4.9E-20 134.2 16.5 126 52-184 232-382 (444)
26 PRK07402 precorrin-6B methylas 99.7 3.4E-15 7.4E-20 119.0 15.5 125 50-183 20-144 (196)
27 PRK14904 16S rRNA methyltransf 99.7 2.9E-15 6.4E-20 133.4 16.3 122 54-184 234-380 (445)
28 PF13847 Methyltransf_31: Meth 99.7 1.5E-15 3.3E-20 116.2 11.9 108 69-184 2-113 (152)
29 PF01209 Ubie_methyltran: ubiE 99.7 1.1E-15 2.5E-20 124.5 11.8 114 62-183 39-155 (233)
30 TIGR00563 rsmB ribosomal RNA s 99.6 6.4E-15 1.4E-19 130.6 16.4 162 54-238 222-425 (426)
31 PRK10901 16S rRNA methyltransf 99.6 9.8E-15 2.1E-19 129.4 17.2 160 54-238 228-426 (427)
32 TIGR03533 L3_gln_methyl protei 99.6 1.9E-14 4.1E-19 120.9 17.9 119 54-181 101-251 (284)
33 PF05175 MTS: Methyltransferas 99.6 3.9E-15 8.4E-20 116.0 12.5 111 59-179 20-138 (170)
34 COG2519 GCD14 tRNA(1-methylade 99.6 5.1E-15 1.1E-19 119.2 12.6 120 51-180 75-194 (256)
35 PF01135 PCMT: Protein-L-isoas 99.6 2E-15 4.3E-20 120.9 9.2 118 52-180 54-171 (209)
36 PRK11036 putative S-adenosyl-L 99.6 8.2E-15 1.8E-19 121.5 13.2 103 69-180 43-148 (255)
37 PRK11805 N5-glutamine S-adenos 99.6 6.1E-14 1.3E-18 119.0 17.4 117 55-180 114-262 (307)
38 PF02353 CMAS: Mycolic acid cy 99.6 1.4E-14 3.1E-19 120.7 13.1 110 65-186 57-171 (273)
39 PLN02233 ubiquinone biosynthes 99.6 2.5E-14 5.3E-19 118.9 14.3 117 61-184 64-185 (261)
40 TIGR02752 MenG_heptapren 2-hep 99.6 1.7E-14 3.7E-19 117.8 12.9 110 65-182 40-152 (231)
41 PRK00811 spermidine synthase; 99.6 7.5E-14 1.6E-18 117.3 16.9 106 68-180 74-190 (283)
42 COG2230 Cfa Cyclopropane fatty 99.6 1.9E-14 4.2E-19 118.7 12.6 112 63-186 65-181 (283)
43 TIGR00091 tRNA (guanine-N(7)-) 99.6 3E-14 6.4E-19 113.4 12.8 105 70-180 16-131 (194)
44 PF13578 Methyltransf_24: Meth 99.6 2.1E-15 4.6E-20 108.3 5.5 102 75-182 1-106 (106)
45 PRK00312 pcm protein-L-isoaspa 99.6 4.1E-14 8.8E-19 114.1 13.2 114 53-180 61-174 (212)
46 COG4123 Predicted O-methyltran 99.6 2.5E-14 5.3E-19 116.1 11.8 118 56-179 30-168 (248)
47 PF13659 Methyltransf_26: Meth 99.6 2.9E-14 6.2E-19 104.0 10.8 101 72-179 2-113 (117)
48 PF08704 GCD14: tRNA methyltra 99.6 5.3E-14 1.1E-18 115.0 13.2 122 50-179 20-144 (247)
49 PLN02244 tocopherol O-methyltr 99.6 5.1E-14 1.1E-18 121.3 13.7 106 69-183 117-225 (340)
50 smart00828 PKS_MT Methyltransf 99.6 9.2E-14 2E-18 112.9 14.1 103 72-183 1-106 (224)
51 PF07279 DUF1442: Protein of u 99.6 4.2E-13 9.1E-18 105.6 16.6 156 55-236 26-186 (218)
52 PRK15128 23S rRNA m(5)C1962 me 99.6 2.3E-13 5.1E-18 118.9 16.5 110 68-182 218-340 (396)
53 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.8E-14 1.5E-18 115.4 12.2 106 69-183 55-166 (247)
54 COG4106 Tam Trans-aconitate me 99.5 1.4E-14 3E-19 113.5 6.9 101 65-180 25-128 (257)
55 TIGR00740 methyltransferase, p 99.5 2.6E-13 5.6E-18 111.5 14.9 106 70-184 53-164 (239)
56 PLN02366 spermidine synthase 99.5 4E-13 8.7E-18 113.7 16.4 107 68-180 89-205 (308)
57 COG2227 UbiG 2-polyprenyl-3-me 99.5 4.6E-14 1E-18 112.9 10.0 117 55-183 41-163 (243)
58 PRK01581 speE spermidine synth 99.5 3.5E-13 7.7E-18 115.0 15.7 107 67-180 147-267 (374)
59 PRK11207 tellurite resistance 99.5 9.6E-14 2.1E-18 110.7 11.3 100 68-179 28-132 (197)
60 PLN02396 hexaprenyldihydroxybe 99.5 1.1E-13 2.4E-18 117.8 12.3 103 70-182 131-236 (322)
61 TIGR00536 hemK_fam HemK family 99.5 2.2E-13 4.7E-18 114.7 13.8 119 56-183 96-246 (284)
62 PRK10909 rsmD 16S rRNA m(2)G96 99.5 6E-13 1.3E-17 105.9 15.3 121 52-181 35-159 (199)
63 PRK11873 arsM arsenite S-adeno 99.5 2.1E-13 4.5E-18 114.1 13.2 113 66-186 73-188 (272)
64 TIGR00477 tehB tellurite resis 99.5 1.8E-13 3.9E-18 109.0 12.0 102 66-180 26-132 (195)
65 PRK01683 trans-aconitate 2-met 99.5 1.2E-13 2.5E-18 114.7 11.2 99 67-180 28-129 (258)
66 TIGR00417 speE spermidine synt 99.5 9.6E-13 2.1E-17 110.0 16.5 106 68-180 70-185 (270)
67 PF13649 Methyltransf_25: Meth 99.5 9E-14 1.9E-18 98.9 8.8 93 74-175 1-101 (101)
68 PF05401 NodS: Nodulation prot 99.5 3.2E-13 6.9E-18 105.3 12.3 165 45-235 15-193 (201)
69 PRK13943 protein-L-isoaspartat 99.5 3.2E-13 6.9E-18 114.9 13.5 105 65-180 75-179 (322)
70 PRK15001 SAM-dependent 23S rib 99.5 2.3E-13 5E-18 117.8 12.8 117 54-180 213-339 (378)
71 TIGR00406 prmA ribosomal prote 99.5 4.5E-13 9.7E-18 113.0 14.3 104 69-183 158-261 (288)
72 TIGR00537 hemK_rel_arch HemK-r 99.5 8.3E-13 1.8E-17 103.7 14.9 109 59-181 8-140 (179)
73 PRK14103 trans-aconitate 2-met 99.5 1.1E-13 2.4E-18 114.7 10.3 96 68-180 27-125 (255)
74 PF08241 Methyltransf_11: Meth 99.5 1.2E-13 2.6E-18 96.4 8.9 92 75-179 1-95 (95)
75 PRK11933 yebU rRNA (cytosine-C 99.5 7.7E-13 1.7E-17 117.6 15.5 125 53-184 94-245 (470)
76 COG1092 Predicted SAM-dependen 99.5 5.7E-13 1.2E-17 115.3 14.2 115 65-184 212-339 (393)
77 COG2264 PrmA Ribosomal protein 99.5 2.8E-13 6E-18 112.8 11.6 125 47-183 141-265 (300)
78 PRK00517 prmA ribosomal protei 99.5 3.5E-12 7.6E-17 105.4 17.6 109 58-183 106-215 (250)
79 PRK11783 rlmL 23S rRNA m(2)G24 99.5 4.7E-13 1E-17 125.2 13.7 110 66-183 534-658 (702)
80 PRK14121 tRNA (guanine-N(7)-)- 99.5 8.9E-13 1.9E-17 113.9 13.8 104 69-179 121-233 (390)
81 PF06325 PrmA: Ribosomal prote 99.5 9E-13 2E-17 110.6 13.0 114 58-184 148-262 (295)
82 PRK04266 fibrillarin; Provisio 99.5 7.7E-13 1.7E-17 107.4 12.3 115 56-180 56-175 (226)
83 PRK15068 tRNA mo(5)U34 methylt 99.5 8E-13 1.7E-17 113.0 12.7 110 67-186 119-231 (322)
84 TIGR03534 RF_mod_PrmC protein- 99.5 1.9E-12 4.1E-17 106.8 14.1 117 55-181 70-217 (251)
85 TIGR02716 C20_methyl_CrtF C-20 99.5 1.1E-12 2.4E-17 111.6 12.8 111 64-185 143-258 (306)
86 PRK01544 bifunctional N5-gluta 99.5 8.6E-13 1.9E-17 119.0 12.7 101 71-180 139-268 (506)
87 TIGR00095 RNA methyltransferas 99.5 6.5E-12 1.4E-16 99.4 16.2 124 54-182 33-160 (189)
88 PRK14968 putative methyltransf 99.4 2.1E-12 4.6E-17 101.8 13.3 110 60-180 13-147 (188)
89 PRK11088 rrmA 23S rRNA methylt 99.4 2.2E-12 4.8E-17 108.0 13.9 132 30-180 47-180 (272)
90 PTZ00098 phosphoethanolamine N 99.4 1.2E-12 2.7E-17 108.9 12.1 114 58-184 41-159 (263)
91 PLN02823 spermine synthase 99.4 1.6E-12 3.5E-17 111.1 12.6 106 68-180 101-219 (336)
92 PRK12335 tellurite resistance 99.4 1.3E-12 2.8E-17 110.2 11.9 99 68-179 118-221 (287)
93 PF03602 Cons_hypoth95: Conser 99.4 3.7E-12 8.1E-17 100.1 13.6 127 51-182 22-154 (183)
94 PF08242 Methyltransf_12: Meth 99.4 3.4E-14 7.3E-19 100.7 1.8 96 75-177 1-99 (99)
95 PRK08317 hypothetical protein; 99.4 2.8E-12 6.2E-17 104.6 13.0 113 65-186 14-129 (241)
96 PRK00216 ubiE ubiquinone/menaq 99.4 2.2E-12 4.8E-17 105.4 12.3 108 68-182 49-159 (239)
97 PRK10258 biotin biosynthesis p 99.4 8.6E-13 1.9E-17 109.1 9.8 113 55-183 27-142 (251)
98 PRK06922 hypothetical protein; 99.4 2.3E-12 4.9E-17 117.0 13.3 112 64-183 412-539 (677)
99 TIGR03704 PrmC_rel_meth putati 99.4 3.5E-12 7.6E-17 105.4 13.4 100 71-180 87-215 (251)
100 COG2813 RsmC 16S RNA G1207 met 99.4 1.2E-11 2.5E-16 102.6 15.9 115 53-179 142-264 (300)
101 TIGR00452 methyltransferase, p 99.4 2.8E-12 6.1E-17 108.8 12.5 109 68-186 119-230 (314)
102 PRK09489 rsmC 16S ribosomal RN 99.4 2.5E-12 5.4E-17 110.6 12.3 113 54-179 181-301 (342)
103 PRK14967 putative methyltransf 99.4 7.6E-12 1.6E-16 101.7 13.9 99 69-179 35-157 (223)
104 TIGR03587 Pse_Me-ase pseudamin 99.4 4.7E-12 1E-16 101.4 12.5 105 65-186 38-147 (204)
105 PF03848 TehB: Tellurite resis 99.4 3.1E-12 6.8E-17 100.6 11.2 104 66-182 26-134 (192)
106 PRK09328 N5-glutamine S-adenos 99.4 5.2E-12 1.1E-16 105.7 13.0 116 55-180 90-237 (275)
107 COG0421 SpeE Spermidine syntha 99.4 1.5E-11 3.3E-16 102.5 15.4 106 68-180 74-189 (282)
108 PLN02336 phosphoethanolamine N 99.4 4.9E-12 1.1E-16 113.9 13.3 115 58-184 255-372 (475)
109 COG0144 Sun tRNA and rRNA cyto 99.4 1.3E-11 2.9E-16 106.6 15.4 130 50-184 136-291 (355)
110 PRK14966 unknown domain/N5-glu 99.4 7.4E-12 1.6E-16 109.0 13.6 118 54-180 234-380 (423)
111 TIGR02072 BioC biotin biosynth 99.4 3.7E-12 8E-17 104.0 10.8 102 69-183 33-137 (240)
112 PF10672 Methyltrans_SAM: S-ad 99.4 9.6E-12 2.1E-16 103.8 13.2 120 54-182 110-239 (286)
113 PRK03522 rumB 23S rRNA methylu 99.4 1.5E-11 3.2E-16 105.1 14.4 102 69-180 172-273 (315)
114 PRK03612 spermidine synthase; 99.4 4.7E-12 1E-16 114.8 11.6 107 68-181 295-415 (521)
115 KOG1270 Methyltransferases [Co 99.4 1.2E-12 2.6E-17 105.7 6.6 99 72-183 91-197 (282)
116 TIGR01177 conserved hypothetic 99.4 1.1E-11 2.4E-16 106.5 12.9 117 53-180 165-293 (329)
117 PF02390 Methyltransf_4: Putat 99.4 2E-11 4.3E-16 97.1 13.0 101 73-179 20-131 (195)
118 PRK05134 bifunctional 3-demeth 99.4 4.1E-11 8.9E-16 97.9 15.2 113 59-182 37-152 (233)
119 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.5E-11 3.2E-16 99.5 12.4 106 68-183 37-145 (223)
120 PRK11705 cyclopropane fatty ac 99.3 1.5E-11 3.2E-16 107.5 12.8 102 67-184 164-270 (383)
121 PF01564 Spermine_synth: Sperm 99.3 2.2E-11 4.7E-16 100.2 13.0 107 68-181 74-191 (246)
122 COG2890 HemK Methylase of poly 99.3 1.6E-11 3.5E-16 102.9 12.2 118 55-183 93-240 (280)
123 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.2E-11 2.5E-16 99.7 10.5 102 70-183 34-154 (213)
124 COG0220 Predicted S-adenosylme 99.3 6.1E-11 1.3E-15 96.0 14.4 110 64-179 42-162 (227)
125 PF13489 Methyltransf_23: Meth 99.3 2.5E-11 5.4E-16 93.0 11.4 108 56-184 7-118 (161)
126 PRK11188 rrmJ 23S rRNA methylt 99.3 2.9E-11 6.2E-16 97.3 11.9 100 68-180 49-164 (209)
127 TIGR02021 BchM-ChlM magnesium 99.3 4.9E-11 1.1E-15 96.7 13.3 101 68-181 53-158 (219)
128 PTZ00146 fibrillarin; Provisio 99.3 3.2E-11 6.8E-16 100.5 12.3 119 55-180 115-236 (293)
129 PLN02336 phosphoethanolamine N 99.3 2.4E-11 5.3E-16 109.4 12.6 109 65-184 32-145 (475)
130 PLN02490 MPBQ/MSBQ methyltrans 99.3 2.8E-11 6E-16 103.6 12.1 99 70-180 113-214 (340)
131 PRK13168 rumA 23S rRNA m(5)U19 99.3 7E-11 1.5E-15 105.4 15.2 104 69-180 296-399 (443)
132 TIGR00479 rumA 23S rRNA (uraci 99.3 8.6E-11 1.9E-15 104.5 15.4 104 69-180 291-395 (431)
133 smart00138 MeTrc Methyltransfe 99.3 8.9E-11 1.9E-15 97.7 14.1 105 70-181 99-242 (264)
134 TIGR03438 probable methyltrans 99.3 8.5E-11 1.8E-15 99.7 14.2 109 70-180 63-176 (301)
135 PRK13255 thiopurine S-methyltr 99.3 3.5E-11 7.6E-16 97.3 11.3 99 69-179 36-153 (218)
136 TIGR02085 meth_trns_rumB 23S r 99.3 1.4E-10 3E-15 101.2 15.6 101 69-180 232-333 (374)
137 PF08003 Methyltransf_9: Prote 99.3 5.7E-11 1.2E-15 98.6 11.7 116 62-187 107-225 (315)
138 KOG1540 Ubiquinone biosynthesi 99.3 9.5E-11 2E-15 94.3 12.5 115 58-179 88-212 (296)
139 COG0742 N6-adenine-specific me 99.3 2.1E-10 4.6E-15 89.3 14.1 126 51-182 23-155 (187)
140 KOG4300 Predicted methyltransf 99.3 3.2E-11 7E-16 94.1 9.4 106 65-179 71-180 (252)
141 PRK07580 Mg-protoporphyrin IX 99.3 1.3E-10 2.9E-15 94.5 13.6 107 60-179 51-164 (230)
142 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.3 3.8E-10 8.2E-15 94.8 16.1 151 52-225 67-246 (283)
143 TIGR01983 UbiG ubiquinone bios 99.3 1.8E-10 4E-15 93.4 13.6 103 70-182 45-150 (224)
144 cd02440 AdoMet_MTases S-adenos 99.2 1.3E-10 2.9E-15 81.3 11.1 99 73-180 1-103 (107)
145 KOG1271 Methyltransferases [Ge 99.2 2.6E-11 5.5E-16 92.9 7.4 122 55-184 45-184 (227)
146 smart00650 rADc Ribosomal RNA 99.2 1.4E-10 3.1E-15 90.2 11.5 104 68-184 11-116 (169)
147 PRK06202 hypothetical protein; 99.2 5.4E-11 1.2E-15 97.3 9.4 115 58-185 48-170 (232)
148 TIGR00438 rrmJ cell division p 99.2 1.8E-10 3.8E-15 91.2 12.0 107 61-180 23-145 (188)
149 KOG2904 Predicted methyltransf 99.2 1.8E-10 3.8E-15 93.6 11.0 122 54-182 126-286 (328)
150 PHA03411 putative methyltransf 99.2 6.1E-10 1.3E-14 91.9 14.4 115 49-180 45-182 (279)
151 PF05891 Methyltransf_PK: AdoM 99.2 3.2E-11 6.9E-16 95.7 6.5 140 70-227 55-201 (218)
152 PF04989 CmcI: Cephalosporin h 99.2 1.9E-10 4.2E-15 90.9 10.5 162 55-224 17-187 (206)
153 PRK04338 N(2),N(2)-dimethylgua 99.2 9.5E-10 2E-14 95.9 14.7 100 71-180 58-157 (382)
154 PF10294 Methyltransf_16: Puta 99.2 7.3E-10 1.6E-14 86.5 12.6 108 68-181 43-156 (173)
155 PRK05785 hypothetical protein; 99.2 4.6E-10 9.9E-15 91.4 11.9 98 60-175 40-141 (226)
156 PLN02672 methionine S-methyltr 99.2 6.7E-10 1.5E-14 106.8 14.5 124 53-183 97-280 (1082)
157 PF09445 Methyltransf_15: RNA 99.2 1.1E-10 2.5E-15 89.3 7.4 79 72-157 1-79 (163)
158 PRK05031 tRNA (uracil-5-)-meth 99.1 1.4E-09 3E-14 94.6 14.7 102 72-180 208-319 (362)
159 PRK00536 speE spermidine synth 99.1 9.8E-10 2.1E-14 90.7 13.0 100 67-181 69-171 (262)
160 PF02475 Met_10: Met-10+ like- 99.1 6.4E-10 1.4E-14 88.4 11.4 101 68-178 99-199 (200)
161 COG2263 Predicted RNA methylas 99.1 2.4E-09 5.1E-14 82.9 13.5 89 68-170 43-136 (198)
162 KOG2899 Predicted methyltransf 99.1 3.6E-10 7.8E-15 90.3 9.1 111 68-185 56-213 (288)
163 PLN02585 magnesium protoporphy 99.1 1.3E-09 2.9E-14 92.6 13.0 96 70-179 144-248 (315)
164 KOG1661 Protein-L-isoaspartate 99.1 3.5E-10 7.6E-15 88.6 8.3 112 59-180 70-192 (237)
165 TIGR02143 trmA_only tRNA (urac 99.1 3.4E-09 7.3E-14 91.8 14.8 103 71-180 198-310 (353)
166 TIGR00308 TRM1 tRNA(guanine-26 99.1 2.3E-09 5E-14 93.1 13.8 101 72-180 46-146 (374)
167 PF05724 TPMT: Thiopurine S-me 99.1 6.7E-10 1.4E-14 89.7 9.7 128 47-184 15-158 (218)
168 PF06080 DUF938: Protein of un 99.1 1.7E-09 3.6E-14 85.5 10.5 130 55-185 8-145 (204)
169 PF07021 MetW: Methionine bios 99.1 9.9E-10 2.2E-14 85.7 8.6 104 61-182 6-112 (193)
170 COG4976 Predicted methyltransf 99.1 4.4E-10 9.6E-15 89.2 6.7 145 71-238 126-287 (287)
171 PHA03412 putative methyltransf 99.0 3.3E-09 7.1E-14 85.8 11.9 117 50-182 31-164 (241)
172 PTZ00338 dimethyladenosine tra 99.0 8.2E-09 1.8E-13 87.1 14.3 93 54-158 20-112 (294)
173 KOG2915 tRNA(1-methyladenosine 99.0 3.2E-09 7E-14 86.3 10.9 112 56-175 92-203 (314)
174 COG2265 TrmA SAM-dependent met 99.0 9.9E-09 2.1E-13 90.7 14.4 122 50-180 269-395 (432)
175 PRK13256 thiopurine S-methyltr 99.0 6.5E-09 1.4E-13 84.1 12.2 131 46-184 20-166 (226)
176 PF02527 GidB: rRNA small subu 99.0 4.3E-09 9.4E-14 82.7 10.6 96 73-179 51-146 (184)
177 KOG3191 Predicted N6-DNA-methy 99.0 1.7E-08 3.7E-13 77.4 12.8 103 70-182 43-169 (209)
178 COG3963 Phospholipid N-methylt 99.0 1.3E-08 2.9E-13 77.0 11.2 119 53-179 31-154 (194)
179 KOG2730 Methylase [General fun 99.0 2.7E-09 5.8E-14 84.2 7.7 98 55-158 79-176 (263)
180 PRK11727 23S rRNA mA1618 methy 99.0 5.5E-09 1.2E-13 88.8 10.1 83 70-156 114-198 (321)
181 PF00891 Methyltransf_2: O-met 98.9 4.2E-09 9.2E-14 86.5 8.9 103 63-184 93-202 (241)
182 PRK00050 16S rRNA m(4)C1402 me 98.9 7.2E-09 1.6E-13 87.0 10.3 92 59-157 9-100 (296)
183 KOG1499 Protein arginine N-met 98.9 3.3E-09 7.2E-14 89.4 8.2 105 68-182 58-168 (346)
184 PF05185 PRMT5: PRMT5 arginine 98.9 1.3E-08 2.9E-13 90.4 12.1 103 71-181 187-297 (448)
185 KOG2361 Predicted methyltransf 98.9 1.8E-09 3.9E-14 86.4 5.7 106 73-183 74-185 (264)
186 TIGR02081 metW methionine bios 98.9 5.5E-09 1.2E-13 83.1 8.4 89 70-173 13-104 (194)
187 PRK14896 ksgA 16S ribosomal RN 98.9 2.1E-08 4.6E-13 83.3 12.2 90 53-157 12-101 (258)
188 COG2520 Predicted methyltransf 98.9 2E-08 4.4E-13 85.5 11.8 106 68-183 186-291 (341)
189 PF01170 UPF0020: Putative RNA 98.9 4.4E-08 9.5E-13 76.9 12.8 122 52-180 10-150 (179)
190 KOG1541 Predicted protein carb 98.9 4.6E-09 9.9E-14 83.0 7.0 112 54-180 32-159 (270)
191 PRK01544 bifunctional N5-gluta 98.9 2.3E-08 5.1E-13 90.5 12.3 103 70-179 347-460 (506)
192 COG0357 GidB Predicted S-adeno 98.9 5.2E-08 1.1E-12 78.0 12.5 98 71-179 68-166 (215)
193 COG2521 Predicted archaeal met 98.9 3.8E-09 8.2E-14 84.1 5.6 104 68-179 132-243 (287)
194 KOG3010 Methyltransferase [Gen 98.8 4E-09 8.6E-14 84.4 5.0 111 59-179 21-135 (261)
195 PRK00274 ksgA 16S ribosomal RN 98.8 5.9E-08 1.3E-12 81.2 12.3 101 54-168 26-126 (272)
196 TIGR00755 ksgA dimethyladenosi 98.8 4.7E-08 1E-12 81.0 11.6 101 54-169 13-116 (253)
197 PF12147 Methyltransf_20: Puta 98.8 1.8E-07 4E-12 77.2 13.4 123 59-187 124-255 (311)
198 PRK04148 hypothetical protein; 98.8 1.2E-07 2.6E-12 70.2 10.0 98 58-172 4-102 (134)
199 PF03059 NAS: Nicotianamine sy 98.7 8.4E-08 1.8E-12 79.6 9.2 105 70-181 120-230 (276)
200 PF03291 Pox_MCEL: mRNA cappin 98.7 7.7E-08 1.7E-12 82.4 8.4 105 70-179 62-184 (331)
201 COG1041 Predicted DNA modifica 98.7 1.5E-07 3.4E-12 79.8 9.9 118 52-180 179-309 (347)
202 KOG1122 tRNA and rRNA cytosine 98.7 1.2E-07 2.5E-12 81.6 8.5 111 67-183 238-373 (460)
203 PF05958 tRNA_U5-meth_tr: tRNA 98.6 3.6E-07 7.8E-12 79.2 11.5 113 51-167 174-299 (352)
204 COG0030 KsgA Dimethyladenosine 98.6 1.2E-06 2.5E-11 72.1 13.6 102 54-168 14-116 (259)
205 KOG3420 Predicted RNA methylas 98.6 6.7E-08 1.5E-12 71.6 5.1 94 68-172 46-144 (185)
206 COG4262 Predicted spermidine s 98.6 9.3E-07 2E-11 75.0 12.4 106 69-181 288-407 (508)
207 KOG1500 Protein arginine N-met 98.6 2.3E-07 4.9E-12 77.8 8.5 99 69-178 176-279 (517)
208 KOG0820 Ribosomal RNA adenine 98.6 6.7E-07 1.5E-11 73.0 10.7 91 56-158 44-134 (315)
209 PF04816 DUF633: Family of unk 98.6 7.8E-07 1.7E-11 71.1 11.0 99 74-180 1-100 (205)
210 PF05711 TylF: Macrocin-O-meth 98.6 2.7E-07 5.8E-12 75.6 8.0 139 54-213 54-228 (248)
211 PLN02232 ubiquinone biosynthes 98.5 4E-07 8.6E-12 70.2 7.9 78 99-183 1-83 (160)
212 PRK10611 chemotaxis methyltran 98.5 1.3E-06 2.9E-11 73.3 11.1 164 6-181 55-262 (287)
213 TIGR00478 tly hemolysin TlyA f 98.5 2.3E-07 4.9E-12 75.4 6.2 93 69-179 74-169 (228)
214 KOG1975 mRNA cap methyltransfe 98.5 9.1E-07 2E-11 73.9 9.7 107 69-179 116-235 (389)
215 KOG2187 tRNA uracil-5-methyltr 98.5 8.4E-07 1.8E-11 78.3 9.5 122 51-178 360-487 (534)
216 PRK10742 putative methyltransf 98.4 2.8E-06 6.1E-11 69.3 10.3 88 60-156 76-173 (250)
217 PF05219 DREV: DREV methyltran 98.4 1.4E-05 3E-10 65.3 14.0 132 70-223 94-236 (265)
218 TIGR00006 S-adenosyl-methyltra 98.4 5.2E-06 1.1E-10 70.1 12.0 93 59-157 10-102 (305)
219 PF02384 N6_Mtase: N-6 DNA Met 98.4 2.7E-06 5.8E-11 72.5 10.3 124 49-177 25-179 (311)
220 KOG1562 Spermidine synthase [A 98.4 4.6E-06 9.9E-11 69.0 10.9 150 67-236 118-282 (337)
221 PF08123 DOT1: Histone methyla 98.4 5.9E-06 1.3E-10 66.1 11.4 118 58-183 31-160 (205)
222 PF13679 Methyltransf_32: Meth 98.4 1.5E-05 3.2E-10 60.1 12.3 103 59-169 10-122 (141)
223 PF01728 FtsJ: FtsJ-like methy 98.3 2.3E-06 5.1E-11 67.1 7.5 99 70-180 23-138 (181)
224 TIGR02987 met_A_Alw26 type II 98.3 1.2E-05 2.7E-10 73.4 12.9 100 54-156 8-121 (524)
225 PF01269 Fibrillarin: Fibrilla 98.3 8E-06 1.7E-10 65.3 9.8 107 67-180 70-177 (229)
226 PRK11783 rlmL 23S rRNA m(2)G24 98.3 9.4E-06 2E-10 76.6 11.8 98 54-156 173-312 (702)
227 COG0293 FtsJ 23S rRNA methylas 98.3 1E-05 2.2E-10 64.2 9.9 103 68-183 43-161 (205)
228 PF06962 rRNA_methylase: Putat 98.3 3.8E-06 8.3E-11 62.6 7.0 84 97-187 1-96 (140)
229 KOG1709 Guanidinoacetate methy 98.2 2.5E-05 5.5E-10 61.9 11.7 105 69-184 100-209 (271)
230 TIGR01444 fkbM_fam methyltrans 98.2 4.3E-06 9.3E-11 62.8 6.9 58 73-132 1-58 (143)
231 PF01739 CheR: CheR methyltran 98.2 2.4E-06 5.1E-11 67.9 5.4 105 70-181 31-175 (196)
232 TIGR03439 methyl_EasF probable 98.2 0.0001 2.2E-09 62.9 15.5 108 70-179 76-195 (319)
233 PF02005 TRM: N2,N2-dimethylgu 98.2 1.7E-05 3.7E-10 69.2 10.8 104 70-180 49-153 (377)
234 COG1352 CheR Methylase of chem 98.2 4.2E-05 9.1E-10 63.6 12.5 103 71-180 97-240 (268)
235 COG4076 Predicted RNA methylas 98.2 4.5E-06 9.8E-11 64.7 6.0 100 71-183 33-137 (252)
236 PF00398 RrnaAD: Ribosomal RNA 98.1 1.6E-05 3.4E-10 66.3 9.2 120 54-183 14-136 (262)
237 COG2384 Predicted SAM-dependen 98.1 6.7E-05 1.5E-09 59.8 12.1 102 71-180 17-119 (226)
238 COG0116 Predicted N6-adenine-s 98.1 0.00011 2.4E-09 63.4 14.2 120 54-180 175-343 (381)
239 COG3510 CmcI Cephalosporin hyd 98.1 6.3E-05 1.4E-09 58.6 10.9 153 56-221 55-215 (237)
240 KOG3115 Methyltransferase-like 98.1 1.4E-05 3E-10 62.7 6.6 103 72-179 62-181 (249)
241 PF05148 Methyltransf_8: Hypot 98.0 2.9E-05 6.3E-10 61.5 8.5 128 46-223 52-181 (219)
242 KOG3178 Hydroxyindole-O-methyl 98.0 2.5E-05 5.3E-10 66.4 8.1 96 71-184 178-278 (342)
243 COG0275 Predicted S-adenosylme 98.0 0.00012 2.5E-09 61.2 11.7 86 68-157 21-106 (314)
244 PF09243 Rsm22: Mitochondrial 98.0 3.7E-05 8E-10 64.4 8.5 105 68-181 31-140 (274)
245 PF01795 Methyltransf_5: MraW 98.0 3.9E-05 8.5E-10 64.8 8.3 96 58-158 9-104 (310)
246 COG1889 NOP1 Fibrillarin-like 97.9 0.00015 3.3E-09 57.0 9.7 118 54-179 58-178 (231)
247 KOG3201 Uncharacterized conser 97.9 0.00011 2.4E-09 55.7 8.3 121 53-179 9-138 (201)
248 PRK01747 mnmC bifunctional tRN 97.8 0.00017 3.7E-09 67.8 10.8 104 70-179 57-204 (662)
249 PF01861 DUF43: Protein of unk 97.8 0.0034 7.3E-08 51.1 16.3 102 69-179 43-147 (243)
250 COG1189 Predicted rRNA methyla 97.8 0.0017 3.6E-08 52.6 14.0 147 54-223 60-220 (245)
251 PRK11760 putative 23S rRNA C24 97.7 0.00024 5.2E-09 60.6 9.6 87 69-174 210-296 (357)
252 COG0500 SmtA SAM-dependent met 97.7 0.00035 7.7E-09 51.7 9.6 104 74-185 52-159 (257)
253 COG1867 TRM1 N2,N2-dimethylgua 97.7 0.00056 1.2E-08 58.6 11.2 101 71-180 53-153 (380)
254 KOG2940 Predicted methyltransf 97.7 5.1E-05 1.1E-09 60.8 4.2 98 71-180 73-173 (325)
255 KOG3045 Predicted RNA methylas 97.7 0.00025 5.4E-09 57.9 8.2 97 58-183 168-266 (325)
256 PF05971 Methyltransf_10: Prot 97.7 8.8E-05 1.9E-09 62.4 5.8 81 72-156 104-186 (299)
257 COG3897 Predicted methyltransf 97.7 0.00015 3.2E-09 56.8 6.5 73 68-154 77-149 (218)
258 PF04672 Methyltransf_19: S-ad 97.6 0.00071 1.5E-08 56.0 10.5 167 14-184 11-193 (267)
259 PHA01634 hypothetical protein 97.6 0.00021 4.5E-09 52.0 6.1 75 69-156 27-101 (156)
260 KOG2352 Predicted spermine/spe 97.6 0.00015 3.2E-09 64.1 6.3 115 70-186 295-421 (482)
261 PF03141 Methyltransf_29: Puta 97.6 6.3E-05 1.4E-09 66.7 3.7 100 71-183 118-221 (506)
262 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 4.5E-05 9.8E-10 62.9 2.0 116 70-188 56-206 (256)
263 KOG0024 Sorbitol dehydrogenase 97.4 0.0015 3.3E-08 55.1 10.0 120 54-181 144-273 (354)
264 KOG1269 SAM-dependent methyltr 97.4 0.00024 5.2E-09 61.6 5.5 107 68-183 108-217 (364)
265 KOG1253 tRNA methyltransferase 97.4 0.00018 4E-09 63.6 4.2 114 63-180 102-215 (525)
266 PF07942 N2227: N2227-like pro 97.3 0.0022 4.7E-08 53.4 9.4 108 71-186 57-208 (270)
267 KOG2198 tRNA cytosine-5-methyl 97.3 0.0039 8.5E-08 53.5 10.6 118 66-184 151-299 (375)
268 PF04445 SAM_MT: Putative SAM- 97.3 0.00024 5.3E-09 57.6 3.2 75 72-155 77-159 (234)
269 PF07091 FmrO: Ribosomal RNA m 97.2 0.002 4.2E-08 52.7 8.4 88 57-155 91-179 (251)
270 KOG1596 Fibrillarin and relate 97.2 0.0027 5.8E-08 51.4 8.9 106 68-180 154-260 (317)
271 COG5459 Predicted rRNA methyla 97.2 0.00033 7.1E-09 59.5 3.4 108 68-180 111-224 (484)
272 COG1064 AdhP Zn-dependent alco 97.1 0.006 1.3E-07 52.3 10.3 97 68-183 164-261 (339)
273 KOG4058 Uncharacterized conser 97.0 0.0038 8.3E-08 46.8 7.4 115 54-180 57-171 (199)
274 COG1063 Tdh Threonine dehydrog 97.0 0.011 2.4E-07 51.3 11.4 102 70-183 168-271 (350)
275 KOG1501 Arginine N-methyltrans 97.0 0.0015 3.2E-08 57.2 5.6 59 73-133 69-127 (636)
276 COG4798 Predicted methyltransf 97.0 0.0022 4.8E-08 50.3 6.0 109 66-183 44-168 (238)
277 KOG4589 Cell division protein 96.9 0.016 3.5E-07 45.3 10.2 99 69-186 68-187 (232)
278 PF00107 ADH_zinc_N: Zinc-bind 96.8 0.0045 9.7E-08 45.3 6.5 91 80-183 1-91 (130)
279 PF11599 AviRa: RRNA methyltra 96.8 0.073 1.6E-06 42.6 13.2 108 70-181 51-214 (246)
280 COG0286 HsdM Type I restrictio 96.8 0.018 3.9E-07 52.3 11.3 136 50-187 166-335 (489)
281 PF12692 Methyltransf_17: S-ad 96.7 0.027 5.8E-07 42.3 9.3 101 71-183 29-136 (160)
282 COG4301 Uncharacterized conser 96.5 0.084 1.8E-06 43.2 12.1 111 65-179 73-191 (321)
283 PF03141 Methyltransf_29: Puta 96.3 0.0097 2.1E-07 53.2 6.2 101 68-183 363-469 (506)
284 PRK09880 L-idonate 5-dehydroge 96.3 0.031 6.8E-07 48.1 9.0 98 70-182 169-267 (343)
285 cd00315 Cyt_C5_DNA_methylase C 96.2 0.024 5.2E-07 47.5 7.8 95 73-183 2-113 (275)
286 KOG2793 Putative N2,N2-dimethy 96.2 0.05 1.1E-06 44.7 9.3 104 70-183 86-201 (248)
287 KOG1331 Predicted methyltransf 96.1 0.0054 1.2E-07 50.9 3.3 106 52-179 30-141 (293)
288 PRK09424 pntA NAD(P) transhydr 96.1 0.071 1.5E-06 48.5 10.7 108 69-186 163-290 (509)
289 KOG1227 Putative methyltransfe 96.0 0.0047 1E-07 51.6 2.7 101 70-180 194-296 (351)
290 cd08283 FDH_like_1 Glutathione 96.0 0.063 1.4E-06 47.1 9.9 107 66-181 180-306 (386)
291 PF05430 Methyltransf_30: S-ad 96.0 0.013 2.8E-07 43.1 4.7 51 123-179 32-88 (124)
292 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.4 8.7E-06 37.7 12.7 126 73-226 2-151 (185)
293 KOG3987 Uncharacterized conser 95.8 0.0017 3.6E-08 51.5 -0.9 95 70-184 112-210 (288)
294 KOG0822 Protein kinase inhibit 95.8 0.024 5.3E-07 50.9 6.2 100 73-180 370-477 (649)
295 TIGR00027 mthyl_TIGR00027 meth 95.7 0.49 1.1E-05 39.4 13.3 111 70-183 81-199 (260)
296 PF02254 TrkA_N: TrkA-N domain 95.6 0.068 1.5E-06 38.2 7.1 88 79-179 4-94 (116)
297 KOG1099 SAM-dependent methyltr 95.5 0.053 1.1E-06 43.8 6.5 94 70-180 41-162 (294)
298 cd08281 liver_ADH_like1 Zinc-d 95.5 0.14 2.9E-06 44.7 9.8 102 68-182 189-291 (371)
299 TIGR03451 mycoS_dep_FDH mycoth 95.5 0.18 3.9E-06 43.7 10.5 103 68-182 174-277 (358)
300 cd08254 hydroxyacyl_CoA_DH 6-h 95.5 0.18 4E-06 42.8 10.4 99 68-180 163-262 (338)
301 KOG2651 rRNA adenine N-6-methy 95.4 0.056 1.2E-06 46.8 6.9 54 58-113 141-194 (476)
302 KOG2360 Proliferation-associat 95.3 0.022 4.7E-07 49.3 4.0 99 52-156 195-293 (413)
303 KOG2671 Putative RNA methylase 95.3 0.026 5.7E-07 48.2 4.3 97 49-155 187-292 (421)
304 PRK13699 putative methylase; P 95.3 0.036 7.9E-07 45.1 5.1 51 124-179 2-70 (227)
305 COG0686 Ald Alanine dehydrogen 95.2 0.27 5.9E-06 41.7 10.1 96 70-179 167-266 (371)
306 cd08237 ribitol-5-phosphate_DH 95.1 0.23 5E-06 42.8 9.9 94 69-181 162-256 (341)
307 PF00145 DNA_methylase: C-5 cy 95.1 0.13 2.7E-06 43.8 8.3 94 73-183 2-112 (335)
308 COG3129 Predicted SAM-dependen 95.1 0.043 9.3E-07 44.4 4.8 85 72-161 80-167 (292)
309 PF11968 DUF3321: Putative met 95.1 0.062 1.3E-06 43.1 5.7 80 72-176 53-139 (219)
310 PRK11524 putative methyltransf 95.0 0.057 1.2E-06 45.5 5.8 53 123-180 8-79 (284)
311 COG0677 WecC UDP-N-acetyl-D-ma 94.9 0.34 7.4E-06 42.4 10.2 106 72-187 10-134 (436)
312 PLN03154 putative allyl alcoho 94.9 0.44 9.5E-06 41.2 11.2 101 67-181 155-258 (348)
313 PRK11524 putative methyltransf 94.9 0.11 2.3E-06 43.8 7.2 56 59-117 195-252 (284)
314 cd05188 MDR Medium chain reduc 94.9 0.43 9.4E-06 38.8 10.6 99 69-181 133-232 (271)
315 TIGR00561 pntA NAD(P) transhyd 94.8 0.23 5E-06 45.3 9.4 101 69-179 162-282 (511)
316 PRK10309 galactitol-1-phosphat 94.8 0.38 8.2E-06 41.4 10.4 103 68-182 158-261 (347)
317 PF02636 Methyltransf_28: Puta 94.7 0.048 1E-06 45.1 4.5 47 71-117 19-72 (252)
318 PF01555 N6_N4_Mtase: DNA meth 94.7 0.1 2.2E-06 41.7 6.3 52 59-113 178-231 (231)
319 cd08239 THR_DH_like L-threonin 94.6 0.36 7.9E-06 41.2 9.9 99 68-180 161-261 (339)
320 PLN02740 Alcohol dehydrogenase 94.5 0.54 1.2E-05 41.1 10.8 102 67-181 195-300 (381)
321 COG1062 AdhC Zn-dependent alco 94.2 0.66 1.4E-05 39.9 10.2 113 57-183 173-287 (366)
322 TIGR03201 dearomat_had 6-hydro 94.2 0.41 8.9E-06 41.3 9.3 107 68-183 164-274 (349)
323 PLN02827 Alcohol dehydrogenase 94.2 0.55 1.2E-05 41.1 10.2 102 67-181 190-295 (378)
324 PF05050 Methyltransf_21: Meth 94.2 0.13 2.9E-06 38.9 5.6 43 76-118 1-48 (167)
325 TIGR00675 dcm DNA-methyltransf 94.0 0.41 8.9E-06 41.0 8.7 93 74-183 1-110 (315)
326 TIGR00518 alaDH alanine dehydr 93.9 0.56 1.2E-05 41.1 9.7 104 70-187 166-273 (370)
327 cd08294 leukotriene_B4_DH_like 93.9 0.91 2E-05 38.4 10.8 100 66-180 139-240 (329)
328 cd08230 glucose_DH Glucose deh 93.9 0.44 9.6E-06 41.2 8.9 96 69-182 171-270 (355)
329 TIGR02818 adh_III_F_hyde S-(hy 93.9 1.1 2.4E-05 39.0 11.5 102 67-181 182-287 (368)
330 PRK13699 putative methylase; P 93.8 0.28 6E-06 40.0 7.1 56 60-118 151-208 (227)
331 cd08285 NADP_ADH NADP(H)-depen 93.8 0.72 1.6E-05 39.7 10.2 104 67-182 163-267 (351)
332 cd08293 PTGR2 Prostaglandin re 93.8 0.97 2.1E-05 38.6 10.8 95 72-179 156-252 (345)
333 COG0604 Qor NADPH:quinone redu 93.7 0.92 2E-05 39.0 10.5 103 66-182 138-242 (326)
334 TIGR03366 HpnZ_proposed putati 93.7 1.1 2.5E-05 37.2 10.8 100 70-183 120-220 (280)
335 TIGR02825 B4_12hDH leukotriene 93.6 1.5 3.3E-05 37.2 11.6 100 66-180 134-236 (325)
336 KOG2352 Predicted spermine/spe 93.6 0.5 1.1E-05 42.3 8.7 96 73-179 51-159 (482)
337 KOG1098 Putative SAM-dependent 93.6 1.6 3.4E-05 40.5 11.8 39 68-106 42-80 (780)
338 KOG2798 Putative trehalase [Ca 93.5 0.32 7E-06 41.2 7.0 35 145-179 257-294 (369)
339 PRK07502 cyclohexadienyl dehyd 93.5 0.52 1.1E-05 40.0 8.6 88 72-178 7-97 (307)
340 cd08295 double_bond_reductase_ 93.5 1.4 3.1E-05 37.6 11.4 100 67-180 148-250 (338)
341 COG1565 Uncharacterized conser 93.5 0.42 9.1E-06 41.3 7.7 49 71-119 78-133 (370)
342 cd05278 FDH_like Formaldehyde 93.5 0.84 1.8E-05 39.0 9.9 102 67-180 164-266 (347)
343 PRK11064 wecC UDP-N-acetyl-D-m 93.4 2.2 4.8E-05 38.0 12.7 105 72-186 4-124 (415)
344 PF03807 F420_oxidored: NADP o 93.4 0.64 1.4E-05 31.9 7.5 85 74-178 2-91 (96)
345 COG1568 Predicted methyltransf 93.3 0.66 1.4E-05 38.8 8.3 97 69-174 151-250 (354)
346 PF01262 AlaDh_PNT_C: Alanine 93.3 0.21 4.7E-06 38.5 5.4 45 67-113 16-61 (168)
347 COG1748 LYS9 Saccharopine dehy 93.3 0.44 9.5E-06 41.9 7.7 83 72-167 2-88 (389)
348 PLN02353 probable UDP-glucose 93.0 3.5 7.5E-05 37.5 13.4 102 73-187 3-133 (473)
349 cd08300 alcohol_DH_class_III c 93.0 1.6 3.6E-05 37.8 11.1 103 67-182 183-289 (368)
350 PF03686 UPF0146: Uncharacteri 92.9 0.67 1.5E-05 34.0 7.1 89 63-172 6-95 (127)
351 PF01210 NAD_Gly3P_dh_N: NAD-d 92.9 0.47 1E-05 36.2 6.7 95 73-179 1-101 (157)
352 TIGR01202 bchC 2-desacetyl-2-h 92.9 0.56 1.2E-05 39.8 7.8 87 70-181 144-231 (308)
353 TIGR02822 adh_fam_2 zinc-bindi 92.8 1.1 2.4E-05 38.3 9.7 93 67-182 162-255 (329)
354 cd08233 butanediol_DH_like (2R 92.8 1.8 3.9E-05 37.1 11.0 102 68-181 170-272 (351)
355 cd00401 AdoHcyase S-adenosyl-L 92.8 1.4 3E-05 39.2 10.2 88 69-181 200-289 (413)
356 COG0270 Dcm Site-specific DNA 92.7 0.86 1.9E-05 39.2 8.8 98 71-183 3-118 (328)
357 cd08261 Zn_ADH7 Alcohol dehydr 92.7 1.7 3.6E-05 37.1 10.6 101 66-179 155-256 (337)
358 PTZ00357 methyltransferase; Pr 92.7 0.59 1.3E-05 43.9 7.9 104 73-176 703-830 (1072)
359 cd08286 FDH_like_ADH2 formalde 92.6 2.1 4.6E-05 36.5 11.2 100 68-179 164-264 (345)
360 cd08301 alcohol_DH_plants Plan 92.6 1.9 4E-05 37.5 10.8 104 66-182 183-290 (369)
361 cd08277 liver_alcohol_DH_like 92.5 2.1 4.5E-05 37.2 11.0 102 68-182 182-287 (365)
362 TIGR02356 adenyl_thiF thiazole 92.4 2.3 4.9E-05 33.9 10.3 80 70-156 20-120 (202)
363 PRK09422 ethanol-active dehydr 92.1 1.9 4.1E-05 36.7 10.2 100 66-179 158-259 (338)
364 PRK05708 2-dehydropantoate 2-r 92.1 0.84 1.8E-05 38.8 7.9 102 72-183 3-107 (305)
365 PF06859 Bin3: Bicoid-interact 92.1 0.07 1.5E-06 38.0 1.1 40 147-186 1-49 (110)
366 COG1004 Ugd Predicted UDP-gluc 92.1 5.7 0.00012 35.0 12.8 101 73-186 2-125 (414)
367 COG3315 O-Methyltransferase in 92.1 2.9 6.3E-05 35.5 11.0 109 71-182 93-210 (297)
368 KOG0022 Alcohol dehydrogenase, 92.0 2.3 5E-05 36.3 10.0 104 66-182 188-295 (375)
369 PRK12475 thiamine/molybdopteri 91.8 2.6 5.6E-05 36.5 10.7 79 70-156 23-125 (338)
370 cd08278 benzyl_alcohol_DH Benz 91.8 2.1 4.6E-05 37.1 10.3 99 68-179 184-283 (365)
371 PF10354 DUF2431: Domain of un 91.7 1.1 2.3E-05 34.7 7.3 100 77-180 3-124 (166)
372 COG1255 Uncharacterized protei 91.4 3 6.5E-05 30.1 8.6 89 64-173 7-96 (129)
373 TIGR02819 fdhA_non_GSH formald 91.3 2.1 4.6E-05 37.7 9.8 105 68-182 183-300 (393)
374 KOG0780 Signal recognition par 91.2 3.4 7.3E-05 36.4 10.4 111 72-183 102-224 (483)
375 PRK07417 arogenate dehydrogena 91.0 1.2 2.6E-05 37.3 7.6 87 73-180 2-89 (279)
376 PF04378 RsmJ: Ribosomal RNA s 91.0 1.4 3E-05 36.3 7.7 114 56-179 44-162 (245)
377 KOG2912 Predicted DNA methylas 91.0 0.42 9E-06 40.6 4.6 78 75-155 107-186 (419)
378 PLN02586 probable cinnamyl alc 90.9 4.7 0.0001 35.0 11.5 96 69-181 182-278 (360)
379 cd01488 Uba3_RUB Ubiquitin act 90.8 3 6.4E-05 35.3 9.7 77 73-156 1-97 (291)
380 PF02153 PDH: Prephenate dehyd 90.7 0.91 2E-05 37.6 6.6 74 86-178 3-76 (258)
381 cd01484 E1-2_like Ubiquitin ac 90.7 3.5 7.5E-05 33.8 9.8 87 73-167 1-111 (234)
382 PF00899 ThiF: ThiF family; I 90.6 2.8 6.1E-05 30.8 8.6 80 71-157 2-102 (135)
383 COG0287 TyrA Prephenate dehydr 90.6 1.4 3.1E-05 37.0 7.7 90 72-180 4-96 (279)
384 cd00757 ThiF_MoeB_HesA_family 90.6 4.2 9E-05 33.0 10.2 80 70-156 20-120 (228)
385 cd08238 sorbose_phosphate_red 90.5 2 4.3E-05 38.0 9.0 102 69-179 174-286 (410)
386 cd05279 Zn_ADH1 Liver alcohol 90.4 4.2 9.1E-05 35.2 10.8 101 67-180 180-284 (365)
387 cd08231 MDR_TM0436_like Hypoth 90.3 4.5 9.8E-05 34.8 10.9 99 70-180 177-279 (361)
388 PRK15182 Vi polysaccharide bio 90.2 4.1 8.8E-05 36.5 10.6 104 70-187 5-126 (425)
389 cd08296 CAD_like Cinnamyl alco 90.1 4.3 9.2E-05 34.6 10.5 97 67-179 160-257 (333)
390 COG2961 ComJ Protein involved 90.1 7.5 0.00016 32.1 10.9 117 53-179 72-193 (279)
391 cd08263 Zn_ADH10 Alcohol dehyd 90.1 4.3 9.3E-05 35.1 10.6 99 69-179 186-285 (367)
392 cd05285 sorbitol_DH Sorbitol d 90.0 5.7 0.00012 33.9 11.2 100 67-179 159-263 (343)
393 PRK06249 2-dehydropantoate 2-r 89.9 1.3 2.7E-05 37.8 7.0 35 145-179 70-104 (313)
394 PF02558 ApbA: Ketopantoate re 89.9 5.9 0.00013 29.4 10.0 93 74-179 1-99 (151)
395 PRK15057 UDP-glucose 6-dehydro 89.8 5.2 0.00011 35.3 10.9 102 73-187 2-123 (388)
396 KOG0781 Signal recognition par 89.8 3.1 6.6E-05 37.6 9.2 132 70-218 377-527 (587)
397 cd05281 TDH Threonine dehydrog 89.8 7.8 0.00017 33.1 11.8 98 69-179 162-260 (341)
398 cd08265 Zn_ADH3 Alcohol dehydr 89.7 3.8 8.3E-05 35.8 10.0 102 68-180 201-306 (384)
399 PRK09496 trkA potassium transp 89.7 4.7 0.0001 36.0 10.7 95 71-178 231-328 (453)
400 PRK05786 fabG 3-ketoacyl-(acyl 89.6 9.1 0.0002 30.5 12.1 82 70-155 4-89 (238)
401 cd08232 idonate-5-DH L-idonate 89.6 2.6 5.7E-05 35.8 8.7 95 70-179 165-260 (339)
402 PLN02256 arogenate dehydrogena 89.5 4.2 9.1E-05 34.6 9.7 93 66-180 31-125 (304)
403 cd08236 sugar_DH NAD(P)-depend 89.5 6.4 0.00014 33.5 11.1 102 66-180 155-257 (343)
404 KOG0821 Predicted ribosomal RN 89.5 0.89 1.9E-05 36.7 5.2 62 68-133 48-109 (326)
405 PRK10083 putative oxidoreducta 89.4 4.6 0.0001 34.3 10.1 99 67-179 157-257 (339)
406 TIGR00692 tdh L-threonine 3-de 89.2 9.5 0.00021 32.5 11.9 99 69-180 160-260 (340)
407 PF05206 TRM13: Methyltransfer 89.1 1.9 4.1E-05 35.9 7.1 65 69-134 17-85 (259)
408 cd01492 Aos1_SUMO Ubiquitin ac 89.1 5.6 0.00012 31.5 9.6 79 70-156 20-119 (197)
409 PRK05690 molybdopterin biosynt 89.1 7.1 0.00015 32.1 10.5 80 70-156 31-131 (245)
410 PRK12921 2-dehydropantoate 2-r 89.1 2.3 4.9E-05 35.9 7.9 91 73-178 2-99 (305)
411 KOG2078 tRNA modification enzy 89.0 0.34 7.5E-06 42.7 2.7 65 69-136 248-313 (495)
412 PRK08324 short chain dehydroge 88.6 7.1 0.00015 37.2 11.6 80 70-156 421-507 (681)
413 PLN02662 cinnamyl-alcohol dehy 88.6 3.2 6.9E-05 35.0 8.5 79 70-155 3-84 (322)
414 PRK08655 prephenate dehydrogen 88.5 2.7 5.8E-05 37.8 8.2 87 73-178 2-89 (437)
415 PRK15001 SAM-dependent 23S rib 88.5 7.2 0.00016 34.4 10.7 107 58-180 32-141 (378)
416 PRK08293 3-hydroxybutyryl-CoA 88.3 5.4 0.00012 33.5 9.6 96 72-179 4-118 (287)
417 PRK08507 prephenate dehydrogen 88.2 2.3 5E-05 35.5 7.3 84 73-178 2-88 (275)
418 PRK08306 dipicolinate synthase 88.1 6.6 0.00014 33.3 10.0 92 70-184 151-243 (296)
419 cd01483 E1_enzyme_family Super 88.1 8.8 0.00019 28.4 10.2 77 73-157 1-99 (143)
420 cd08255 2-desacetyl-2-hydroxye 87.9 6.9 0.00015 32.1 9.9 95 66-179 93-188 (277)
421 PRK06130 3-hydroxybutyryl-CoA 87.9 7.1 0.00015 33.1 10.2 95 71-178 4-112 (311)
422 cd08279 Zn_ADH_class_III Class 87.8 5.6 0.00012 34.4 9.7 101 67-179 179-280 (363)
423 PRK06940 short chain dehydroge 87.8 9 0.00019 31.7 10.6 81 72-156 3-85 (275)
424 PRK08114 cystathionine beta-ly 87.8 14 0.0003 32.8 12.2 127 54-187 60-192 (395)
425 PRK05396 tdh L-threonine 3-deh 87.8 6.1 0.00013 33.7 9.9 100 70-181 163-263 (341)
426 PRK07688 thiamine/molybdopteri 87.8 9.2 0.0002 33.1 10.8 80 70-156 23-125 (339)
427 KOG2782 Putative SAM dependent 87.6 0.56 1.2E-05 37.8 2.9 102 55-159 29-130 (303)
428 PLN02494 adenosylhomocysteinas 87.5 4.7 0.0001 36.5 9.0 87 69-180 252-340 (477)
429 PF10237 N6-adenineMlase: Prob 87.5 8.3 0.00018 29.6 9.3 93 70-180 25-122 (162)
430 PRK07109 short chain dehydroge 87.5 15 0.00033 31.5 12.1 84 70-156 7-94 (334)
431 PRK14620 NAD(P)H-dependent gly 87.4 3.7 8E-05 35.1 8.2 94 73-178 2-103 (326)
432 cd08240 6_hydroxyhexanoate_dh_ 87.2 9.6 0.00021 32.6 10.7 94 70-179 175-272 (350)
433 TIGR00936 ahcY adenosylhomocys 87.2 5.8 0.00013 35.3 9.3 88 69-181 193-282 (406)
434 PRK09496 trkA potassium transp 87.1 7.2 0.00016 34.8 10.2 92 73-178 2-96 (453)
435 PRK05476 S-adenosyl-L-homocyst 87.1 17 0.00036 32.6 12.2 87 70-181 211-299 (425)
436 PRK11199 tyrA bifunctional cho 87.0 11 0.00024 33.1 11.1 33 72-105 99-132 (374)
437 PRK12439 NAD(P)H-dependent gly 87.0 3.7 8E-05 35.5 8.0 100 70-182 6-113 (341)
438 PF07015 VirC1: VirC1 protein; 86.9 2.2 4.7E-05 34.8 6.1 75 80-155 12-91 (231)
439 KOG1201 Hydroxysteroid 17-beta 86.9 4.2 9.1E-05 34.4 7.8 85 68-156 35-123 (300)
440 PRK08594 enoyl-(acyl carrier p 86.9 15 0.00033 30.0 11.4 82 70-155 6-95 (257)
441 TIGR02355 moeB molybdopterin s 86.8 11 0.00025 30.8 10.4 89 70-165 23-132 (240)
442 TIGR00853 pts-lac PTS system, 86.8 5.2 0.00011 27.8 7.2 71 72-174 4-74 (95)
443 PLN02514 cinnamyl-alcohol dehy 86.8 13 0.00027 32.2 11.3 96 70-182 180-276 (357)
444 PRK05703 flhF flagellar biosyn 86.7 23 0.0005 31.7 13.4 78 71-155 221-307 (424)
445 PRK08762 molybdopterin biosynt 86.7 8.4 0.00018 33.8 10.2 79 70-155 134-233 (376)
446 COG4121 Uncharacterized conser 86.7 1.4 3E-05 36.4 4.9 106 70-179 58-206 (252)
447 PRK06522 2-dehydropantoate 2-r 86.6 9.1 0.0002 32.1 10.1 92 73-178 2-97 (304)
448 PF11899 DUF3419: Protein of u 86.6 3.9 8.4E-05 36.0 7.9 83 97-186 252-339 (380)
449 KOG3924 Putative protein methy 86.6 6.5 0.00014 34.6 9.0 110 68-184 190-311 (419)
450 PF11312 DUF3115: Protein of u 86.5 2.5 5.4E-05 36.0 6.4 116 72-190 88-249 (315)
451 PF02826 2-Hacid_dh_C: D-isome 86.5 6.4 0.00014 30.5 8.4 89 68-178 33-124 (178)
452 KOG0023 Alcohol dehydrogenase, 86.4 8.6 0.00019 33.0 9.4 101 68-182 179-280 (360)
453 PRK10669 putative cation:proto 86.4 2.8 6.2E-05 38.8 7.4 93 72-179 418-513 (558)
454 cd08291 ETR_like_1 2-enoyl thi 86.2 12 0.00026 31.6 10.8 97 70-180 142-241 (324)
455 PRK07680 late competence prote 86.2 4.9 0.00011 33.5 8.1 87 73-178 2-93 (273)
456 PF02737 3HCDH_N: 3-hydroxyacy 86.1 3.6 7.7E-05 32.1 6.8 96 73-181 1-114 (180)
457 cd08297 CAD3 Cinnamyl alcohol 86.1 9.5 0.00021 32.4 10.1 101 67-180 162-264 (341)
458 cd08266 Zn_ADH_like1 Alcohol d 86.1 10 0.00022 31.8 10.2 98 68-179 164-263 (342)
459 cd00755 YgdL_like Family of ac 86.0 15 0.00033 29.9 10.7 80 70-155 10-110 (231)
460 cd08260 Zn_ADH6 Alcohol dehydr 86.0 13 0.00028 31.7 10.9 98 68-179 163-262 (345)
461 cd08243 quinone_oxidoreductase 86.0 15 0.00032 30.6 11.1 96 68-180 140-237 (320)
462 cd05288 PGDH Prostaglandin deh 86.0 9.6 0.00021 32.1 10.0 98 68-179 143-242 (329)
463 PF12242 Eno-Rase_NADH_b: NAD( 85.8 2.4 5.2E-05 28.2 4.7 37 69-105 37-74 (78)
464 cd01485 E1-1_like Ubiquitin ac 85.7 15 0.00033 29.0 10.4 79 70-156 18-122 (198)
465 PRK07063 short chain dehydroge 85.7 12 0.00026 30.4 10.2 83 70-156 6-95 (260)
466 PRK05808 3-hydroxybutyryl-CoA 85.7 14 0.00031 30.7 10.8 94 72-179 4-116 (282)
467 cd05286 QOR2 Quinone oxidoredu 85.6 10 0.00023 31.3 9.9 97 66-179 132-233 (320)
468 cd05284 arabinose_DH_like D-ar 85.5 14 0.0003 31.4 10.8 97 68-179 165-264 (340)
469 cd08234 threonine_DH_like L-th 85.5 8.9 0.00019 32.4 9.6 99 66-179 155-255 (334)
470 TIGR00497 hsdM type I restrict 85.5 22 0.00047 32.6 12.5 100 51-155 196-301 (501)
471 PRK03659 glutathione-regulated 85.4 3.8 8.3E-05 38.4 7.7 93 72-179 401-496 (601)
472 PRK00094 gpsA NAD(P)H-dependen 85.2 5.8 0.00013 33.7 8.3 93 73-178 3-102 (325)
473 PRK15116 sulfur acceptor prote 85.1 21 0.00046 29.8 11.2 80 70-156 29-130 (268)
474 PRK06172 short chain dehydroge 85.1 13 0.00027 30.1 10.0 80 70-155 6-92 (253)
475 PRK05854 short chain dehydroge 85.1 14 0.0003 31.4 10.5 85 70-155 13-101 (313)
476 PRK08818 prephenate dehydrogen 84.9 4.9 0.00011 35.3 7.7 33 71-104 4-38 (370)
477 cd08245 CAD Cinnamyl alcohol d 84.9 20 0.00043 30.2 11.5 96 67-180 159-255 (330)
478 PLN02178 cinnamyl-alcohol dehy 84.9 15 0.00033 32.1 10.9 94 70-182 178-274 (375)
479 PRK07533 enoyl-(acyl carrier p 84.8 20 0.00043 29.3 11.4 80 70-155 9-96 (258)
480 PLN02989 cinnamyl-alcohol dehy 84.8 6.8 0.00015 33.2 8.5 79 70-155 4-85 (325)
481 PRK06914 short chain dehydroge 84.8 9.8 0.00021 31.3 9.3 81 71-155 3-89 (280)
482 KOG2539 Mitochondrial/chloropl 84.6 0.74 1.6E-05 41.1 2.5 106 69-179 199-313 (491)
483 PRK07877 hypothetical protein; 84.6 11 0.00023 36.2 10.3 81 70-156 106-205 (722)
484 KOG1197 Predicted quinone oxid 84.6 13 0.00028 31.1 9.3 96 70-179 146-243 (336)
485 PF08351 DUF1726: Domain of un 84.5 1.3 2.9E-05 30.6 3.3 35 145-179 9-43 (92)
486 PF14740 DUF4471: Domain of un 84.4 1.6 3.5E-05 36.8 4.3 56 123-183 201-256 (289)
487 TIGR01425 SRP54_euk signal rec 84.4 25 0.00054 31.6 11.9 104 71-183 100-223 (429)
488 PRK08328 hypothetical protein; 84.3 17 0.00038 29.5 10.3 79 70-155 26-126 (231)
489 KOG2015 NEDD8-activating compl 84.3 15 0.00033 31.6 9.9 76 72-155 41-137 (422)
490 COG1893 ApbA Ketopantoate redu 84.2 4.4 9.5E-05 34.6 7.0 37 145-181 65-102 (307)
491 PF07757 AdoMet_MTase: Predict 84.1 0.98 2.1E-05 32.1 2.4 32 70-104 58-89 (112)
492 PLN02702 L-idonate 5-dehydroge 84.1 15 0.00033 31.6 10.5 103 68-180 179-284 (364)
493 PRK07904 short chain dehydroge 83.9 8.4 0.00018 31.5 8.4 81 69-155 6-95 (253)
494 PRK08213 gluconate 5-dehydroge 83.8 16 0.00034 29.7 10.1 80 70-155 11-97 (259)
495 PRK12491 pyrroline-5-carboxyla 83.8 8.3 0.00018 32.2 8.4 87 73-180 4-95 (272)
496 cd08256 Zn_ADH2 Alcohol dehydr 83.8 13 0.00028 31.8 9.9 101 68-180 172-273 (350)
497 PTZ00354 alcohol dehydrogenase 83.6 16 0.00035 30.6 10.4 98 68-179 138-238 (334)
498 KOG2920 Predicted methyltransf 83.5 1 2.2E-05 37.7 2.7 38 69-108 115-152 (282)
499 PRK03562 glutathione-regulated 83.5 4.2 9.2E-05 38.2 7.1 69 72-155 401-472 (621)
500 PRK05867 short chain dehydroge 83.3 15 0.00033 29.7 9.7 80 70-155 8-94 (253)
No 1
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=5e-41 Score=274.12 Aligned_cols=224 Identities=59% Similarity=1.057 Sum_probs=198.3
Q ss_pred CCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026461 14 LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP 93 (238)
Q Consensus 14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~ 93 (238)
....+.+++|+.+++..+.+++.+.++++.+.+++++.+.+.+..+++|..+++..++++|||||+++|++|++++..++
T Consensus 23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~ 102 (247)
T PLN02589 23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP 102 (247)
T ss_pred ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence 34568999999988777888999999999999988888888999999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCC
Q 026461 94 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 173 (238)
Q Consensus 94 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~ 173 (238)
++++|+++|.+++.++.|+++++++|+.++|+++.+++.+.++.+..++...++||+||+|+++..|..+++.+.++|++
T Consensus 103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~ 182 (247)
T PLN02589 103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKV 182 (247)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999998754311136999999999999999999999999999
Q ss_pred CeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461 174 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237 (238)
Q Consensus 174 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 237 (238)
||+|++||++|+|.+.++....++.........+++|++.+.++|+|+++++|+|||+.+++|+
T Consensus 183 GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 183 GGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred CeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 9999999999999998875322221111022358899999999999999999999999999996
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=3e-41 Score=268.83 Aligned_cols=199 Identities=44% Similarity=0.797 Sum_probs=178.9
Q ss_pred CCChHHHHHHHHHhcCC-CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHH
Q 026461 32 REPEPLKKIRDVTADHP-WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 110 (238)
Q Consensus 32 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~ 110 (238)
.+++.++++++.+.... ++.+.+.+..+++|..+++..++++||||||++|++|++||+++|++++|+++|++++.++.
T Consensus 6 ~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~ 85 (205)
T PF01596_consen 6 REPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI 85 (205)
T ss_dssp CSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH
Confidence 47889999999988764 77888999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccccCccccC
Q 026461 111 GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV 190 (238)
Q Consensus 111 a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~ 190 (238)
|+++++++|+.++|+++.+|+.+.++.+..+. ..++||+||+|+.+..|..+++.+.++|+|||+|++||++|+|.+..
T Consensus 86 A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~ 164 (205)
T PF01596_consen 86 ARENFRKAGLDDRIEVIEGDALEVLPELANDG-EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD 164 (205)
T ss_dssp HHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence 99999999999999999999999999886541 13689999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461 191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237 (238)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 237 (238)
+....+ ....+++|++++.++|+|+++++|+|||+.|++||
T Consensus 165 ~~~~~~------~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 165 PDDEDP------KTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp TTGGSH------HHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred ccchhh------hHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 843321 45559999999999999999999999999999996
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=3.6e-39 Score=266.13 Aligned_cols=215 Identities=40% Similarity=0.680 Sum_probs=193.4
Q ss_pred CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC
Q 026461 13 GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI 92 (238)
Q Consensus 13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~ 92 (238)
.....+.+++|+.++ .++++.+.++++.+.++..+.+.+.+..++++..+++..++++|||||||+|++|++++..+
T Consensus 64 ~~~~~~~i~~Y~~~~---~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al 140 (278)
T PLN02476 64 VISLTPRLYDYVLSN---VREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVL 140 (278)
T ss_pred cccchHHHHHHHHhc---CCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhC
Confidence 344557999999984 25788999999999988777888999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccC
Q 026461 93 PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK 172 (238)
Q Consensus 93 ~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~ 172 (238)
++.++|+++|.+++.++.|+++++++|+.++++++.+|+.+.++.+..+ ...++||+||+|+++..|..+++.+.++|+
T Consensus 141 ~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~ 219 (278)
T PLN02476 141 PESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVR 219 (278)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999999999999999999886432 113689999999999999999999999999
Q ss_pred CCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461 173 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237 (238)
Q Consensus 173 ~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 237 (238)
|||+|++||++|+|.+.++....+ .+.++++|++++.++|+++++++|+|||+.|++|+
T Consensus 220 ~GGvIV~DNvL~~G~V~d~~~~d~------~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 220 VGGVIVMDNVLWHGRVADPLVNDA------KTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred CCcEEEEecCccCCcccCcccCCH------HHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 999999999999999988754321 35679999999999999999999999999999985
No 4
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=7.5e-39 Score=261.35 Aligned_cols=220 Identities=58% Similarity=0.999 Sum_probs=196.6
Q ss_pred CcHHHHHHHHhccCCCCCChHHHHHHHHHhcC--CCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026461 16 QSEDLYRYILETSVYPREPEPLKKIRDVTADH--PWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP 93 (238)
Q Consensus 16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~ 93 (238)
..+.++.|+.+++.++++++.+.++++.+.++ ..+.+.+.+..+++|..+++..++++|||||||+|+++++++..++
T Consensus 12 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~ 91 (234)
T PLN02781 12 KSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALP 91 (234)
T ss_pred CcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCC
Confidence 34789999998776678899999999998866 3455678899999999999999999999999999999999999988
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCC
Q 026461 94 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 173 (238)
Q Consensus 94 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~ 173 (238)
+.++|+++|+++++++.|+++++++|+.++++++.+|+.+.++.+.++ +..++||+||+|+.+..+..+++.+.++|+|
T Consensus 92 ~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 92 EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999999998876432 1136899999999999999999999999999
Q ss_pred CeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461 174 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 237 (238)
Q Consensus 174 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 237 (238)
||+|+++|++|+|.+.++....+++.+. .++.+++|++++.++|+++++++|+|||+.|++|+
T Consensus 171 GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 171 GGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred CeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 9999999999999999886544444554 67889999999999999999999999999999986
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=252.60 Aligned_cols=214 Identities=37% Similarity=0.622 Sum_probs=188.1
Q ss_pred CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC
Q 026461 13 GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI 92 (238)
Q Consensus 13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~ 92 (238)
.....+.+..|+.++.. ...+..++++++.+.+.+.+.. .++.+++|..+++..++++|||||++.|+|++|||..+
T Consensus 5 ~~~~~~~l~~y~~~~~~-~~~~~~~~~~~e~a~~~~~pi~--~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l 81 (219)
T COG4122 5 MPNMDEDLYDYLEALIP-GEPPALLAELEEFARENGVPII--DPETGALLRLLARLSGPKRILEIGTAIGYSALWMALAL 81 (219)
T ss_pred cccchHHHHHHHHhhcc-cCCchHHHHHHHHhHhcCCCCC--ChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhC
Confidence 44566899999999642 1355677888888887766554 49999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhcc
Q 026461 93 PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 171 (238)
Q Consensus 93 ~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L 171 (238)
|.++++++||++++.++.|++++++.|+.++++++. +|+.+.+... ..++||+||+|+++..|+++++.+.++|
T Consensus 82 ~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lL 156 (219)
T COG4122 82 PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPLL 156 (219)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHh
Confidence 988999999999999999999999999999999998 6999988762 2689999999999999999999999999
Q ss_pred CCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEcC
Q 026461 172 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 238 (238)
Q Consensus 172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~~ 238 (238)
+|||+|++||++|+|.+.++.- +..+. ....++.|+.++.++|+++++++|+|||+.+++|++
T Consensus 157 r~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 157 RPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred CCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHHhhCcCceeEEEecCCceEEEeecC
Confidence 9999999999999999888742 22233 566699999999999999999999999999999974
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.5e-38 Score=247.31 Aligned_cols=228 Identities=55% Similarity=0.921 Sum_probs=207.3
Q ss_pred HHHHhhhhc-CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcC--CCCCccCcHhHHHHHHHHHhhcCCCEEEEEccc
Q 026461 4 KAKQAASSK-GLLQSEDLYRYILETSVYPREPEPLKKIRDVTADH--PWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVF 80 (238)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G 80 (238)
..+..+..+ ....++.++.|+.+++..+.+++.++++++.+..+ ..+.|.+.++.++++..+++..+++++||||+.
T Consensus 4 ~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvf 83 (237)
T KOG1663|consen 4 KLDNEVPDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVF 83 (237)
T ss_pred cccccCcchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecc
Confidence 334444444 77788999999999999999999999999999877 467789999999999999999999999999999
Q ss_pred ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccch
Q 026461 81 TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 160 (238)
Q Consensus 81 ~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~ 160 (238)
+|++++.+|..+|++++|+++|++++.++.+.+..+.+|...+|+++++++.+.++++.++. +.++||++|+|+++..|
T Consensus 84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~-~~~tfDfaFvDadK~nY 162 (237)
T KOG1663|consen 84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG-ESGTFDFAFVDADKDNY 162 (237)
T ss_pred cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC-CCCceeEEEEccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999987763 57899999999999999
Q ss_pred HHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHH---HHHHHhhcCCCeeEEeeecCCeeEEEEEc
Q 026461 161 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL---DLNRSLADDPRVQLSHVALGDGITICRRI 237 (238)
Q Consensus 161 ~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~lp~~~G~~i~~~~ 237 (238)
..+++.+.++||+||+|++||++|+|.+..|....+.+.+. ++ ++|+.|..||+++...+|+|+|+.+|+|+
T Consensus 163 ~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-----~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 163 SNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-----IREALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred HHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-----hhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 99999999999999999999999999888887665544443 66 99999999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=2.5e-18 Score=124.55 Aligned_cols=104 Identities=22% Similarity=0.361 Sum_probs=87.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
++.+|||||||+|..++++++..+ ..+|+++|+++++++.+++++...+..++++++++|+ ...... .++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 467899999999999999999655 8899999999999999999998888889999999999 332222 57899
Q ss_pred EEEEcC-Cccc------hHHHHHHHHhccCCCeEEEEec
Q 026461 150 YAFVDA-DKDN------YCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 150 ~V~~d~-~~~~------~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+|++.. .... ...+++.+.++|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 3222 2456899999999999999874
No 8
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.74 E-value=4.2e-17 Score=130.87 Aligned_cols=168 Identities=21% Similarity=0.321 Sum_probs=114.8
Q ss_pred CchHHHHhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhc-CCCC----CccCcHhHHHHHHHHHhhcCCCEEE
Q 026461 1 MTDKAKQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDVTAD-HPWA----MMGTAPDAGQLMAMLLRLVNAKKTI 75 (238)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~-~~~~----~~~~~~~~~~~l~~l~~~~~~~~vL 75 (238)
|..+-+..+..+....+.++.+-+.+ .|.+.-....++..+.. ..++ .....+.....+..++...+..+||
T Consensus 1 ~~~~lv~~~~~~~~v~~~~v~~a~~~---vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VL 77 (205)
T PRK13944 1 MAKRLVEELVREGIIKSERVKKAMLS---VPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPRPGMKIL 77 (205)
T ss_pred CHHHHHHHHHHcCCcCCHHHHHHHHh---CCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcCCCCCCEEE
Confidence 44444555555555567777777765 33332222222222221 1111 1223343333333444455667999
Q ss_pred EEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC
Q 026461 76 EIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 76 eiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~ 155 (238)
|||||+|+.+..+++.+++.++|+++|+++++++.+++++...++.++++++.+|+.+.++. ..+||+|+++.
T Consensus 78 DiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~ 150 (205)
T PRK13944 78 EVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HAPFDAIIVTA 150 (205)
T ss_pred EECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CCCccEEEEcc
Confidence 99999999999999987657899999999999999999999988877899999998765432 36999999997
Q ss_pred CccchHHHHHHHHhccCCCeEEEEec
Q 026461 156 DKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 156 ~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.....+ +.+.+.|+|||.+++..
T Consensus 151 ~~~~~~---~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIP---SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchhh---HHHHHhcCcCcEEEEEE
Confidence 654443 56778999999998853
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.73 E-value=2.9e-16 Score=121.25 Aligned_cols=121 Identities=26% Similarity=0.270 Sum_probs=104.9
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
...++.-.+.-..+...+..+++|||||+|..++.++...| .++|++||-++++++..++|++++|. ++++++.+++.
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap 94 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAP 94 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccch
Confidence 34555555555556677888999999999999999995554 99999999999999999999999995 66999999999
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+.++.+ ..+|.||+.+. ......++.++..|+|||.||++-+.
T Consensus 95 ~~L~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 95 EALPDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred HhhcCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 988854 48999999988 88999999999999999999998655
No 10
>PRK04457 spermidine synthase; Provisional
Probab=99.73 E-value=4.2e-16 Score=129.41 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=97.6
Q ss_pred HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461 56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135 (238)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 135 (238)
+....++..+....++++|||||||+|..+.+++...| ..+|+++|+++++++.|++++...+..++++++.+|+.+++
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 34444545555456788999999999999999999886 88999999999999999999876555578999999999988
Q ss_pred HHHHhcccCCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461 136 DQLLKYSENEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.. .++||+|++|..... ..++++.+.+.|+|||+++++
T Consensus 131 ~~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 754 478999999863221 368999999999999999996
No 11
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.72 E-value=2.4e-16 Score=115.92 Aligned_cols=109 Identities=24% Similarity=0.301 Sum_probs=91.9
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461 64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
......+..+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...++. +++++.+|+.+.++..
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 85 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS----- 85 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh-----
Confidence 334445567999999999999999999887 589999999999999999999988765 5899988876543332
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.++||+|+++........+++.+.+.|+|||.++++
T Consensus 86 -~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 -LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred -cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 469999999877667788999999999999999986
No 12
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.71 E-value=3e-16 Score=139.27 Aligned_cols=164 Identities=23% Similarity=0.263 Sum_probs=122.6
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
++.....++..++...++.+|||+|||+|+.|.++++.+.+.++|+++|+++.+++.+++++...|+.+ ++++++|+.+
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~ 314 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRN 314 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhh
Confidence 344455666666666677899999999999999999987657899999999999999999999999864 9999999876
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV 188 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 188 (238)
...... ...++||.|++|++++. ...++..++++|||||.++...+..
T Consensus 315 ~~~~~~---~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi---- 387 (434)
T PRK14901 315 LLELKP---QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL---- 387 (434)
T ss_pred cccccc---cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC----
Confidence 532110 01368999999975421 1356788889999999999876553
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE-----eeec---CCeeEEEEEcC
Q 026461 189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRIF 238 (238)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~G~~i~~~~~ 238 (238)
.++++ ......++..+|+|+.. ++|. .||+++|+.+|
T Consensus 388 -~~~En------------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 388 -HPAEN------------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred -ChhhH------------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 12222 44455567778888755 4564 39999998764
No 13
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.71 E-value=7.9e-16 Score=121.78 Aligned_cols=120 Identities=28% Similarity=0.295 Sum_probs=97.5
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+.+....++...+...++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++...++. +++++.+|+.
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~ 91 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAP 91 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCch
Confidence 34455555554455566778999999999999999998876 789999999999999999999988874 5999998874
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.. + .++||+|+++.....+..+++.+.+.|+|||.++++...
T Consensus 92 ~~---~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 92 IE---L------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred hh---c------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 22 2 368999999876667788999999999999999987543
No 14
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.70 E-value=9.1e-16 Score=135.83 Aligned_cols=126 Identities=21% Similarity=0.302 Sum_probs=102.4
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
..++....+++..++...++.+|||+|||+|+.|.+++..+.+.++|+++|+++.+++.+++++.+.|+. +++++++|+
T Consensus 219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da 297 (431)
T PRK14903 219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADA 297 (431)
T ss_pred EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECch
Confidence 3455666677777777777889999999999999999998866789999999999999999999999985 499999998
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
.+..... .++||.|++|+++.. ..+.+..++++|+|||.++...+..
T Consensus 298 ~~l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 298 ERLTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 7653222 468999999975421 1345777889999999999887664
No 15
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.70 E-value=4.6e-16 Score=125.81 Aligned_cols=154 Identities=25% Similarity=0.351 Sum_probs=108.7
Q ss_pred CCCCcHHHHHHHHhccCCCCCChHHHHHHHHHhc-CC----CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHH
Q 026461 13 GLLQSEDLYRYILETSVYPREPEPLKKIRDVTAD-HP----WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLL 87 (238)
Q Consensus 13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~-~~----~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~ 87 (238)
....+.++...+.+ .|.+.-....+...... .. .+.....+.....+..++...++.+|||||||+|+.+..
T Consensus 18 ~~v~~~~v~~a~~~---v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~ 94 (215)
T TIGR00080 18 GYIKSKRVIDALLS---VPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAV 94 (215)
T ss_pred CCcCCHHHHHHHHh---CChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHH
Confidence 33456777777765 33332222222222221 11 122234444444444555677788999999999999999
Q ss_pred HHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461 88 TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 167 (238)
Q Consensus 88 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~ 167 (238)
+++..++.++|+++|+++++++.|++++...++ ++++++.+|+.+.++. ..+||+|++++.....+ +.+
T Consensus 95 la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~~---~~~ 163 (215)
T TIGR00080 95 LAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKIP---EAL 163 (215)
T ss_pred HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCccccc---HHH
Confidence 999876568899999999999999999999987 5699999998765432 36899999997654443 456
Q ss_pred HhccCCCeEEEEe
Q 026461 168 MKLLKVGGIAVYD 180 (238)
Q Consensus 168 ~~~L~~gG~lv~~ 180 (238)
.+.|+|||++++.
T Consensus 164 ~~~L~~gG~lv~~ 176 (215)
T TIGR00080 164 IDQLKEGGILVMP 176 (215)
T ss_pred HHhcCcCcEEEEE
Confidence 7899999999874
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.70 E-value=5.6e-16 Score=121.82 Aligned_cols=102 Identities=23% Similarity=0.314 Sum_probs=88.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++.+|||+|||+|..++.++...+ .++|+++|.++.+++.+++++++.++. +++++++|+.+.. . .++
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--~------~~~ 109 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--H------EEQ 109 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--c------cCC
Confidence 34578999999999999999987655 689999999999999999999998875 5999999987751 1 479
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
||+|++++ ..++..+++.+.++|+|||.+++.
T Consensus 110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 99999987 566788889999999999999975
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.70 E-value=5.8e-16 Score=123.64 Aligned_cols=112 Identities=25% Similarity=0.356 Sum_probs=96.3
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.....+..+|||+|||+|..++.++...++.++|+++|+++.+++.+++++...++.+++.++.+|+.+.++..
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------ 108 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------ 108 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------
Confidence 34456778999999999999999998776578999999999999999999999887678999999998776654
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.+.||.||+......+..+++.+.+.|+|||.++++..
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 47899999987666788899999999999999998644
No 18
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.68 E-value=5.4e-16 Score=125.04 Aligned_cols=118 Identities=25% Similarity=0.339 Sum_probs=96.5
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
..+.|.....+...+...+..+|||||||+|+.+..+++.+++.++|+++|+++++++.+++++...++ .+++++++|+
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 346666666666666777888999999999999999999876578999999999999999999999887 4699999998
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+.++. .++||+|++++.....+ +.+.+.|+|||.+++.
T Consensus 137 ~~~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred ccCCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 765332 47999999987654443 4567789999998884
No 19
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.68 E-value=2.3e-15 Score=125.31 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=98.6
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
..++.....+...++...++.+|||+|||+|..|..+++.+.+.++|+++|+++.+++.++++++..++. +++++..|+
T Consensus 53 ~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~ 131 (264)
T TIGR00446 53 YYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDG 131 (264)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCH
Confidence 3345555666556666667789999999999999999998876789999999999999999999999985 599999998
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
...... .+.||.|++|.+... ..++++.++++|+|||+|+...+.
T Consensus 132 ~~~~~~-------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 132 RVFGAA-------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHhhhh-------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 765322 357999999965432 134777778999999999976554
No 20
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.6e-16 Score=123.22 Aligned_cols=118 Identities=23% Similarity=0.292 Sum_probs=99.9
Q ss_pred CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461 49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128 (238)
Q Consensus 49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (238)
.+...+.|.....+-.++...+..+|||||||+||.+.-|++.. ++|+++|..++.++.|++++...|+.+ |.+.+
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 34455777776677777788899999999999999999999975 499999999999999999999999976 99999
Q ss_pred cchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+|...-++. ..+||.|++.+.....++ .+.+.|++||.+++-
T Consensus 127 gDG~~G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 127 GDGSKGWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred CCcccCCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 999887665 489999999986666554 367889999999984
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.7e-15 Score=122.82 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=101.5
Q ss_pred cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461 55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134 (238)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (238)
.....+.+..+....++.+|||+|||||-.++.+++..+ .++|+++|+|+.+++.|++.+...+..+ ++|+++|+.++
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L 113 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL 113 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC
Confidence 344444555555555789999999999999999999988 8999999999999999999999988877 99999999776
Q ss_pred HHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 135 LDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
. +++.+||+|.+.- ...+.+..++++.|.|||||.+++-+...
T Consensus 114 P-------f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 P-------FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred C-------CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 2 2478999999874 45577889999999999999988876653
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.68 E-value=1.1e-15 Score=120.53 Aligned_cols=101 Identities=18% Similarity=0.260 Sum_probs=88.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
++.+|||+|||+|..++.++...+ .++|+++|+++++++.|+++++..++.+ ++++++|+.+... .++||
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~fD 114 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEKFD 114 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCCcc
Confidence 478999999999999999998766 7899999999999999999999999865 9999999877421 36999
Q ss_pred EEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 150 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+|++++ ...+..+++.+.+.|+|||.+++-.
T Consensus 115 lV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 115 VVTSRA-VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 999986 3567889999999999999998753
No 23
>PLN03075 nicotianamine synthase; Provisional
Probab=99.67 E-value=5.9e-16 Score=129.03 Aligned_cols=117 Identities=14% Similarity=0.198 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH-cCCCCcEEEEecchhHH
Q 026461 57 DAGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSV 134 (238)
Q Consensus 57 ~~~~~l~~l~~~~~~~~vLeiG~G~G-~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~ 134 (238)
....+|..+... ++++|+|||||.| ++++.++....++++++++|+++++++.|++++.. .++.++++|..+|+.+.
T Consensus 111 lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~ 189 (296)
T PLN03075 111 LEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV 189 (296)
T ss_pred HHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence 344455555444 8899999999955 55666665554589999999999999999999964 88888999999999875
Q ss_pred HHHHHhcccCCCCeeEEEEcC----CccchHHHHHHHHhccCCCeEEEEec
Q 026461 135 LDQLLKYSENEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~----~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.+. .+.||+||+++ .+......++.+.+.|+|||++++..
T Consensus 190 ~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 190 TES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 332 37899999985 24678899999999999999999976
No 24
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.67 E-value=5.8e-16 Score=123.97 Aligned_cols=141 Identities=21% Similarity=0.305 Sum_probs=105.8
Q ss_pred CCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHH
Q 026461 30 YPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 109 (238)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~ 109 (238)
|......+.+++..+...+++. +.+........+.. ++.+|||+|||+|..+..++..++ ..+|+++|+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~ 78 (202)
T PRK00121 4 FVRRRGRLTKGQQRAIEELWPR--LSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVG 78 (202)
T ss_pred chhhccccccchhhhhcccchh--hcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHH
Confidence 3444455666777766655543 45555555555544 667999999999999999998876 679999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEE
Q 026461 110 IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 110 ~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv 178 (238)
.+++++...++ .+++++++|+.+.++... ..++||+|++..... ....+++.+.+.|+|||+++
T Consensus 79 ~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 79 KALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred HHHHHHHHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 99999988877 569999999944444221 247899999853211 14678999999999999998
Q ss_pred Ee
Q 026461 179 YD 180 (238)
Q Consensus 179 ~~ 180 (238)
+.
T Consensus 154 i~ 155 (202)
T PRK00121 154 FA 155 (202)
T ss_pred EE
Confidence 74
No 25
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.67 E-value=2.3e-15 Score=134.18 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=101.4
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
..++.....++..++...++.+|||+|||+|..++++++.+++.++|+++|+++.+++.+++++.+.|+.+ ++++++|+
T Consensus 232 ~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~ 310 (444)
T PRK14902 232 ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDA 310 (444)
T ss_pred EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCc
Confidence 33455666677777766677899999999999999999987557899999999999999999999999865 99999998
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
.+..+.+ .++||+|++|++... ...+++.+.++|+|||.++...+..
T Consensus 311 ~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 311 RKVHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred ccccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 7764433 368999999975321 1346788889999999999776543
No 26
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.67 E-value=3.4e-15 Score=119.00 Aligned_cols=125 Identities=23% Similarity=0.251 Sum_probs=101.9
Q ss_pred CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461 50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
+.+...+....++...+...+..+|||+|||+|..+..++...+ .++|+++|+++++++.+++++...++. +++++.+
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~ 97 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG 97 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC
Confidence 44566777777766666666778999999999999999987665 689999999999999999999988874 5999999
Q ss_pred chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|+.+.++.+ ...+|.++++.. .....+++.+.+.|+|||.+++....
T Consensus 98 d~~~~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 98 SAPECLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred chHHHHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 987755443 345788888753 35678899999999999999987543
No 27
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.66 E-value=2.9e-15 Score=133.39 Aligned_cols=122 Identities=24% Similarity=0.245 Sum_probs=97.0
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
++.....+...++...++.+|||+|||+|+.|.++++.++..++|+++|+++.+++.+++++...|+. +++++++|+.+
T Consensus 234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~ 312 (445)
T PRK14904 234 VQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARS 312 (445)
T ss_pred EeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccc
Confidence 34444555555555666789999999999999999998765689999999999999999999999985 59999999876
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEecccc
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
..+ .++||.|++|.++.. ...++..+.++|+|||+++...+..
T Consensus 313 ~~~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 313 FSP--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred ccc--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 532 468999999864321 1246788889999999999977653
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.66 E-value=1.5e-15 Score=116.17 Aligned_cols=108 Identities=27% Similarity=0.397 Sum_probs=90.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH-HHhcccCCCC
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~ 147 (238)
.+..+|||+|||+|..+..++..+.+.++++|+|+++++++.|++.++..++. +++|+++|+.+ ++. + .++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~------~~~ 73 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL------EEK 73 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS------STT
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc------CCC
Confidence 35789999999999999999965545899999999999999999999999987 79999999988 332 1 279
Q ss_pred eeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461 148 FDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 148 fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
||+|++.... ......++.+.+.|+++|++++.+..+
T Consensus 74 ~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~ 113 (152)
T PF13847_consen 74 FDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH 113 (152)
T ss_dssp EEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred eeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence 9999998643 344578899999999999999887663
No 29
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.66 E-value=1.1e-15 Score=124.54 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=83.3
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461 62 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 141 (238)
Q Consensus 62 l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 141 (238)
+..+....++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|++.+...+.. +++++++|+.++ + +
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~--- 112 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-F--- 112 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S---
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-C---
Confidence 333445667889999999999999999998876899999999999999999999988865 799999999876 2 1
Q ss_pred ccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 142 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
++++||.|++.-. ..+....++++.+.|||||.+++-+..
T Consensus 113 --~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 113 --PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp ---TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 2689999998743 445678999999999999998886654
No 30
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.65 E-value=6.4e-15 Score=130.57 Aligned_cols=162 Identities=21% Similarity=0.269 Sum_probs=116.5
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
++.....++..++...++.+|||+|||+|+.|.++++.++ .++|+++|+++++++.+++++++.|+..++.+..+|...
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~ 300 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG 300 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 3455666677677777788999999999999999999887 789999999999999999999999986445557777644
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV 188 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 188 (238)
..... ..++||.|++|+++.. ...+++.++++|+|||.++...+...
T Consensus 301 ~~~~~-----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~--- 372 (426)
T TIGR00563 301 PSQWA-----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL--- 372 (426)
T ss_pred ccccc-----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC---
Confidence 32110 1468999999964332 14577888899999999998877642
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHhhcCCCee--------------EEeeec---CCeeEEEEEcC
Q 026461 189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ--------------LSHVAL---GDGITICRRIF 238 (238)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~lp~---~~G~~i~~~~~ 238 (238)
++++ ...++.| +.++|++. ..++|. .||+++|+.+|
T Consensus 373 --~~En---------e~~v~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 425 (426)
T TIGR00563 373 --PEEN---------SEQIKAF---LQEHPDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKLIK 425 (426)
T ss_pred --hhhC---------HHHHHHH---HHhCCCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEEEe
Confidence 2221 1224444 44566553 234563 49999998764
No 31
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=9.8e-15 Score=129.40 Aligned_cols=160 Identities=24% Similarity=0.274 Sum_probs=116.8
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
++...+.+...++...++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++...|+. ++++++|+.+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~ 304 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD 304 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence 4555566666666677788999999999999999999876 489999999999999999999998873 6899999876
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCccc-------------------------hHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV 188 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 188 (238)
..... ..++||.|++|++... ...++..+.++|+|||.+++..+...
T Consensus 305 ~~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~--- 376 (427)
T PRK10901 305 PAQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL--- 376 (427)
T ss_pred chhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---
Confidence 43222 1368999999975321 12567788899999999998775431
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE-----------eeec---CCeeEEEEEcC
Q 026461 189 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----------HVAL---GDGITICRRIF 238 (238)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~lp~---~~G~~i~~~~~ 238 (238)
+.++ ......++.++++++.+ ++|- .||+++|+.+|
T Consensus 377 --~~En------------e~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 426 (427)
T PRK10901 377 --PEEN------------EQQIKAFLARHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALLIK 426 (427)
T ss_pred --hhhC------------HHHHHHHHHhCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEEEE
Confidence 2221 23344445566766533 3453 49999997553
No 32
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.64 E-value=1.9e-14 Score=120.92 Aligned_cols=119 Identities=14% Similarity=0.272 Sum_probs=93.2
Q ss_pred CcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461 54 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
..++.+.++...+. ..++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++++...++.++++++++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~ 179 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS 179 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34455566655443 23457999999999999999999876 78999999999999999999999998778999999
Q ss_pred chhHHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEec
Q 026461 130 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
|+.+.++ .++||+|+++.+. ..+..++..+.++|+|||.++++-
T Consensus 180 D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 180 DLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred chhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9865432 3589999997421 012456777788999999999863
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=3.9e-15 Score=116.04 Aligned_cols=111 Identities=22% Similarity=0.373 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461 59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 138 (238)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~ 138 (238)
..+|...+...+.++|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++..+++.+ ++++.+|..+.++
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-- 95 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-- 95 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--
Confidence 33444444444888999999999999999999877 6789999999999999999999999877 9999999876533
Q ss_pred HhcccCCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEE
Q 026461 139 LKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.++||+|+++.+.. ....+++.+.++|+|||.+++
T Consensus 96 ------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 48999999986432 246778888899999998854
No 34
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.1e-15 Score=119.22 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=105.5
Q ss_pred CccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461 51 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130 (238)
Q Consensus 51 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (238)
...+.|....++.......+..+|+|.|+|+|..|.+||.+..+.++|+++|+.++.++.|++|++..++.+++++..+|
T Consensus 75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D 154 (256)
T COG2519 75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD 154 (256)
T ss_pred CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence 34466767777777888999999999999999999999998887899999999999999999999999999889999999
Q ss_pred hhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.+... ...||.||+|-+ +..++++.+.+.|+|||.+++=
T Consensus 155 v~~~~~--------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 155 VREGID--------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred cccccc--------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEE
Confidence 988744 359999999954 5578899999999999999874
No 35
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.62 E-value=2e-15 Score=120.93 Aligned_cols=118 Identities=25% Similarity=0.314 Sum_probs=90.1
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
..+.|..-..+-.++...+..+|||||||+||.|..++....+.++|+++|+++..++.|++++...+.. ++.++++|.
T Consensus 54 ~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg 132 (209)
T PF01135_consen 54 TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDG 132 (209)
T ss_dssp EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-G
T ss_pred echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcch
Confidence 3455655444444556778889999999999999999998776789999999999999999999999875 699999998
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
...++. ..+||.|++.+.....+ ..+.+.|++||++|+-
T Consensus 133 ~~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 133 SEGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred hhcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence 776554 37999999998666554 3467889999999984
No 36
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=8.2e-15 Score=121.49 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=87.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.++.+|||+|||+|..+..++.. ..+|+++|+++++++.|++++...++.++++++++|+.+..+.. .++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence 35679999999999999999985 56999999999999999999999888788999999998764332 5799
Q ss_pred eEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+|++... ..+....++.+.+.|+|||++++-
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998753 345567899999999999998763
No 37
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=6.1e-14 Score=118.97 Aligned_cols=117 Identities=15% Similarity=0.286 Sum_probs=91.6
Q ss_pred cHhHHHHHHHHHh-h-c--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461 55 APDAGQLMAMLLR-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130 (238)
Q Consensus 55 ~~~~~~~l~~l~~-~-~--~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (238)
.+..+.++...+. . . .+.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++++...++.++++++++|
T Consensus 114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 3455555554432 1 1 236899999999999999999876 789999999999999999999999987789999999
Q ss_pred hhHHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEe
Q 026461 131 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+.++ .++||+|+++.+. ..+..+++.+.+.|+|||.++++
T Consensus 193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 866432 3589999987421 11245677778899999999986
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.60 E-value=1.4e-14 Score=120.71 Aligned_cols=110 Identities=22% Similarity=0.322 Sum_probs=85.8
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.+...++.+|||||||.|..++++++.. +.+|+|+.+|++..+.+++.+...|+.+++++..+|..++
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~---------- 124 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL---------- 124 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------
Confidence 3456778899999999999999999986 5799999999999999999999999999999999998765
Q ss_pred CCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 145 EGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 145 ~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
.++||.|+.-. +..+++.+|+.+.++|+|||.++++.+....
T Consensus 125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 46999998753 3456789999999999999999998776543
No 39
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=2.5e-14 Score=118.94 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=90.7
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH--cCCCCcEEEEecchhHHHHHH
Q 026461 61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQL 138 (238)
Q Consensus 61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~l~~~ 138 (238)
.+..+....++.+|||+|||+|..+..+++..++.++|+++|+++++++.|++.... .+...+++++++|+.++ +
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-- 140 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-- 140 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C--
Confidence 333344556678999999999999999998775578999999999999999876532 22234699999998764 1
Q ss_pred HhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 139 LKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
...++||+|++.. ...+....++++.+.|||||.+++.+...
T Consensus 141 ----~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 141 ----FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred ----CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 1257899999864 34456788999999999999998876653
No 40
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.60 E-value=1.7e-14 Score=117.77 Aligned_cols=110 Identities=18% Similarity=0.380 Sum_probs=90.4
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.+...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++...++ ++++++.+|+.+.. + .
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-----~ 111 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F-----D 111 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C-----C
Confidence 44455678999999999999999999876678999999999999999999988776 56999999986641 1 2
Q ss_pred CCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461 145 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 145 ~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.++||+|++... ...+...++.+.+.|+|||.+++.+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 479999998743 34567788999999999999987543
No 41
>PRK00811 spermidine synthase; Provisional
Probab=99.59 E-value=7.5e-14 Score=117.28 Aligned_cols=106 Identities=21% Similarity=0.274 Sum_probs=87.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C--CCcEEEEecchhHHHHHHHhccc
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
..++++||+||||.|..+.++++..+ ..+|+++|+++.+++.+++++...+ . .++++++.+|+.++++..
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~----- 147 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET----- 147 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence 35788999999999999999997633 5799999999999999999987542 2 468999999999987653
Q ss_pred CCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461 144 NEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.++||+|++|...+. ..++++.+.+.|+|||++++.
T Consensus 148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 579999999863221 257789999999999999975
No 42
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1.9e-14 Score=118.74 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=98.0
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461 63 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 142 (238)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 142 (238)
...+.+.++.+|||||||-|..++++|+.. +.+|+|+++|++..+.+++.++..|+..+++++..|-.++
T Consensus 65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-------- 134 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-------- 134 (283)
T ss_pred HHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------
Confidence 334557788999999999999999999987 5899999999999999999999999998899999888776
Q ss_pred cCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 143 ENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 143 ~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
.+.||-|+.-+ ..++++.+|+.+.++|+|||.++++.+....
T Consensus 135 --~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 135 --EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred --ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 46699998753 4677999999999999999999999877533
No 43
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.58 E-value=3e-14 Score=113.42 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=87.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
...+|||||||+|..+..++...| ..+|+++|+++.+++.|++++...++. +++++++|+.+.++... ..+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCcee
Confidence 556899999999999999999887 789999999999999999999988885 69999999988765442 135899
Q ss_pred EEEEcCCccc-----------hHHHHHHHHhccCCCeEEEEe
Q 026461 150 YAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 150 ~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.|+++.+... ...+++.+.+.|+|||.+++.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 9998742111 257899999999999998874
No 44
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.58 E-value=2.1e-15 Score=108.31 Aligned_cols=102 Identities=31% Similarity=0.571 Sum_probs=51.8
Q ss_pred EEEcccccHHHHHHHhhCCCCC--EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461 75 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 75 LeiG~G~G~~t~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~ 152 (238)
||||++.|.++.++++.+++.. +++++|..+. .+.+++.+++.++.++++++.++..+.++.+. .++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence 7999999999999999987554 7999999986 44566666667777889999999999988873 37999999
Q ss_pred EcCCc--cchHHHHHHHHhccCCCeEEEEecc
Q 026461 153 VDADK--DNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 153 ~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+|+.+ +.....++.+++.|+|||+|++||+
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 99864 5567788999999999999999984
No 45
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.58 E-value=4.1e-14 Score=114.15 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=92.0
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+.+.....+..++...+..+|||+|||+|+.+..++... ++|+++|+++++++.+++++.+.++.+ +++..+|+.
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 136 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW 136 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence 4566666666666667778899999999999999888764 489999999999999999999988754 999999976
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.++. .++||+|+++.....+ .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 137 KGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 54332 3789999998765444 45677899999999985
No 46
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=2.5e-14 Score=116.12 Aligned_cols=118 Identities=20% Similarity=0.290 Sum_probs=101.0
Q ss_pred HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461 56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135 (238)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 135 (238)
...+-+|..++.....++|||+|||+|..++.+++..+ ..+|++||+++++++.|+++++.+++.++++++++|..++.
T Consensus 30 ~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 30 GTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL 108 (248)
T ss_pred ccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence 34677888888888899999999999999999999876 59999999999999999999999999999999999999887
Q ss_pred HHHHhcccCCCCeeEEEEcCCc---------------------cchHHHHHHHHhccCCCeEEEE
Q 026461 136 DQLLKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+... ..+||+|+++.+- ....++++.+..+||+||.+.+
T Consensus 109 ~~~~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 109 KALV-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred hccc-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 7652 3579999997431 1135677888899999998887
No 47
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=2.9e-14 Score=104.00 Aligned_cols=101 Identities=24% Similarity=0.449 Sum_probs=85.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
.+|||+|||+|..++.+++.. ..+++++|+++..++.++.++...++.++++++++|..+..+.+ ..++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence 589999999999999999876 57999999999999999999999998888999999998876433 26899999
Q ss_pred EEcCCcc-----------chHHHHHHHHhccCCCeEEEE
Q 026461 152 FVDADKD-----------NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 152 ~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+.+.+.. .+..+++.+.++|+|||++++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9986422 246788999999999999876
No 48
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.57 E-value=5.3e-14 Score=115.02 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=94.6
Q ss_pred CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461 50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
....+.+....++-..+...++.+|||.|+|+|..|.+|+..+.+.|+|+++|+.++.++.|+++++..|+.+++++.+.
T Consensus 20 rtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~ 99 (247)
T PF08704_consen 20 RTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR 99 (247)
T ss_dssp SS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred CcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec
Confidence 33456777777888888899999999999999999999999988799999999999999999999999999989999999
Q ss_pred chhH-HHH-HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhcc-CCCeEEEE
Q 026461 130 EALS-VLD-QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVY 179 (238)
Q Consensus 130 d~~~-~l~-~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L-~~gG~lv~ 179 (238)
|+.+ .++ .+ ...+|.||+|-+ .....+..+.+.| ++||.+++
T Consensus 100 Dv~~~g~~~~~------~~~~DavfLDlp--~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 100 DVCEEGFDEEL------ESDFDAVFLDLP--DPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp -GGCG--STT-------TTSEEEEEEESS--SGGGGHHHHHHHE-EEEEEEEE
T ss_pred ceecccccccc------cCcccEEEEeCC--CHHHHHHHHHHHHhcCCceEEE
Confidence 9864 221 11 478999999965 3356677788899 89999886
No 49
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=5.1e-14 Score=121.29 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=89.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.++++....++.++++++++|+.+. + +..++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~------~~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P------FEDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C------CCCCCc
Confidence 456799999999999999999875 4799999999999999999999888878899999998764 1 125799
Q ss_pred eEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 149 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 149 D~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|+|++... ..+...+++++.+.|+|||.+++.+..
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998643 345577899999999999999987654
No 50
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.56 E-value=9.2e-14 Score=112.91 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=88.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
++|||||||+|..+..+++.++ ..+|+++|+++++++.+++++...++.++++++.+|..+. + . .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence 4799999999999999999876 6899999999999999999999999888999999987544 1 1 3689999
Q ss_pred EEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 152 FVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 152 ~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
++.. ...+...+++.+.++|+|||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9753 2345678999999999999999998764
No 51
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.56 E-value=4.2e-13 Score=105.62 Aligned_cols=156 Identities=20% Similarity=0.280 Sum_probs=121.4
Q ss_pred cHhHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 55 APDAGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~--~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
+|..+++++.|+...+.+.|+|++|+.|. .|+.|+.+. ..+++++||-.+++.....++.+...++.+.++|+.++.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 57899999999999999999999877554 355555433 237999999999999888999998888887789999985
Q ss_pred -hHHHHHHHhcccCCCCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 026461 132 -LSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD 209 (238)
Q Consensus 132 -~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (238)
.+.++.+ ...|++++|+...++. .+|+.+ ++-+.|.++|..|++..+. . -..
T Consensus 106 ~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~~ 159 (218)
T PF07279_consen 106 PEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GFS 159 (218)
T ss_pred HHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Ccc
Confidence 4577776 7999999999887777 776664 4445677788888764321 0 113
Q ss_pred HHHHhhcCCCeeEEeeecCCeeEEEEE
Q 026461 210 LNRSLADDPRVQLSHVALGDGITICRR 236 (238)
Q Consensus 210 ~~~~l~~~~~~~~~~lp~~~G~~i~~~ 236 (238)
|...++..+.+.+++||+|.|+.|.+-
T Consensus 160 w~~~~~~~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 160 WRSVLRGRRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred HHHhcCCCCceeEEEeccCCCeEEEEE
Confidence 455567778899999999999999874
No 52
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.55 E-value=2.3e-13 Score=118.94 Aligned_cols=110 Identities=20% Similarity=0.317 Sum_probs=89.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..++++|||+|||+|..++..+.. ...+|+++|+++.+++.|++|+..+++. ++++++++|+.+.++.+... .+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC
Confidence 346789999999999998876642 2569999999999999999999999986 47999999999988766322 46
Q ss_pred CeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEecc
Q 026461 147 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 147 ~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+||+|++|.+. ..+..++..+.++|+|||+++...+
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 89999999652 2355666677899999999987543
No 53
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=6.8e-14 Score=115.44 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=86.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.+..+|||+|||+|..+..+++.+ .+..+|+++|+++.+++.|++++...+...+++++++|+.+.. .+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 356799999999999999998854 2478999999999999999999998887778999999986641 246
Q ss_pred eeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEeccc
Q 026461 148 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 148 fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+|+|++.... .....+++.+.+.|+|||.+++.+..
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 8998875321 22357899999999999999997754
No 54
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=113.54 Aligned_cols=101 Identities=23% Similarity=0.254 Sum_probs=87.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.+...++.+|+|+|||+|.+|..|++.+| .+.|+|+|-|++|++.|++.+ .+++|..+|+.++-+
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p-------- 89 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP-------- 89 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------
Confidence 34566788999999999999999999998 999999999999999998764 468999999988744
Q ss_pred CCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+.|++|.++ +..+....|..++..|.|||+|.+.
T Consensus 90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 90 EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 57999999986 4556678888899999999999985
No 55
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.54 E-value=2.6e-13 Score=111.46 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=86.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
+..+|||||||+|..+..+++.++ ++.+|+++|+++.+++.|++++...+...+++++++|+.+.. ...+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 123 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA 123 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence 567899999999999999998753 378999999999999999999988776667999999987651 2468
Q ss_pred eEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEecccc
Q 026461 149 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 149 D~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
|+|++.... .....+++.+.+.|+|||.+++.+...
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 988775432 234678899999999999999987653
No 56
>PLN02366 spermidine synthase
Probab=99.54 E-value=4e-13 Score=113.66 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=88.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
..++++||+||||.|..+.+++++ ++..+|+.+|+++..++.+++++...+ + ++|++++.+|+.+.+....
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----- 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----- 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence 457899999999999999999986 435799999999999999999987542 2 3589999999999877541
Q ss_pred CCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.++||+|++|...+. ..++++.+.+.|+|||+++..
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 368999999964321 357899999999999999875
No 57
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.54 E-value=4.6e-14 Score=112.89 Aligned_cols=117 Identities=19% Similarity=0.234 Sum_probs=93.3
Q ss_pred cHhHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 55 APDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 55 ~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
.+....++...+.. ....+|||||||.|..+..||+. +.+|+++|++++.++.|+.+....++. +++.+..+
T Consensus 41 N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~ 115 (243)
T COG2227 41 NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATV 115 (243)
T ss_pred ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhH
Confidence 33344444444442 47789999999999999999985 589999999999999999999888863 77888777
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
++.... .++||+|.+-.. .++...++..+.+++||||+++++.+-
T Consensus 116 edl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 116 EDLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 776442 489999998643 445677999999999999999998765
No 58
>PRK01581 speE spermidine synthase; Validated
Probab=99.53 E-value=3.5e-13 Score=114.96 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=86.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH--H---HcCC-CCcEEEEecchhHHHHHHHh
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLLK 140 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~l~~~~~ 140 (238)
...+|++||+||||.|+.+..+++.. +..+|++||+++++++.|+++. . +..+ .++++++.+|+.++++..
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-- 223 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-- 223 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence 35678999999999999988888753 3689999999999999999732 1 1122 468999999999988764
Q ss_pred cccCCCCeeEEEEcCCcc-------c-hHHHHHHHHhccCCCeEEEEe
Q 026461 141 YSENEGSFDYAFVDADKD-------N-YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 141 ~~~~~~~fD~V~~d~~~~-------~-~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+.||+|++|.... . ..++++.+.+.|+|||++++.
T Consensus 224 ----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 ----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999996322 1 257899999999999999886
No 59
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=9.6e-14 Score=110.73 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=81.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++.+|||+|||+|..+.+|++. +.+|+++|+|+.+++.++++....++. ++++..+|..+. .+ .++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~~ 95 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DGE 95 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CCC
Confidence 446789999999999999999984 469999999999999999999888874 488888887654 11 367
Q ss_pred eeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEE
Q 026461 148 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 148 fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
||+|++.... .....+++.+.++|+|||.+++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999976432 2456889999999999998554
No 60
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.53 E-value=1.1e-13 Score=117.78 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=85.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
++.+|||||||+|..+..++.. +.+|++||+++++++.|+++....+...+++++++++.++... .++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~-------~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE-------GRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------cCCCC
Confidence 4568999999999999999863 5799999999999999998876655556799999998665221 47999
Q ss_pred EEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461 150 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 150 ~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+|++... ..+...+++.+.++|+|||.+++...
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 9998643 34567899999999999999999864
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.53 E-value=2.2e-13 Score=114.67 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=91.4
Q ss_pred HhHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 56 PDAGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 56 ~~~~~~l~~l~~~---~~~-~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
++...++...... ..+ .+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++|+...++.++++++++|.
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 4455555544321 223 6899999999999999999876 6899999999999999999999998877799999998
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCc----------------------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.+.++ ..+||+|+++.+. ..+..++..+.+.|+|||++++.-..
T Consensus 175 ~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 175 FEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred hccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 66422 2489999987321 02345677777899999999986433
No 62
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.52 E-value=6e-13 Score=105.90 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=90.5
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
+..+.....++..+....+..+|||+|||+|..++.++... ..+|+++|.++.+++.+++|++..++. +++++.+|+
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~ 111 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNA 111 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchH
Confidence 33444445556666554567799999999999998655432 369999999999999999999999874 699999999
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCC-ccc-hHHHHHHHHh--ccCCCeEEEEec
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYDN 181 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~ 181 (238)
.+.++.. ..+||+||+|.+ ... ....++.+.. +|+++++++++.
T Consensus 112 ~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 112 LSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 8876532 357999999987 333 3445555543 478999999874
No 63
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=2.1e-13 Score=114.12 Aligned_cols=113 Identities=18% Similarity=0.301 Sum_probs=91.8
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
....++.+|||||||+|..++.++....+.++|+++|+++.+++.|+++....++. ++++..+|+.+. + + ..
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~ 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----AD 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CC
Confidence 34557789999999999999888887665679999999999999999999888874 699999987553 1 1 24
Q ss_pred CCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 146 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 146 ~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
++||+|+.+.. ..+....++++.+.|+|||.+++.++...+
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 68999998753 334567899999999999999998776433
No 64
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=1.8e-13 Score=109.02 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=79.9
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.+++.....++. +++..+|.... .+ .
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~------~ 92 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL------N 92 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc------c
Confidence 34456789999999999999999974 569999999999999999988877763 77777776432 12 3
Q ss_pred CCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461 146 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 146 ~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
++||+|++... ......+++.+.++|+|||++++-
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 68999987532 234567899999999999985553
No 65
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=114.73 Aligned_cols=99 Identities=23% Similarity=0.317 Sum_probs=82.3
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
...++.+|||||||+|..+..+++.++ ..+|+++|+++.+++.+++++ .+++++.+|+.+..+ ..
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~ 92 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQ 92 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CC
Confidence 345678999999999999999999876 789999999999999998764 358899999865422 46
Q ss_pred CeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461 147 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 147 ~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+||+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999998753 345678899999999999999885
No 66
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.51 E-value=9.6e-13 Score=109.96 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=87.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC---CCcEEEEecchhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
..++++||+||||+|..+..++...+ ..+++++|++++.++.+++++...+. ..+++++.+|+.+.+...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 45678999999999999998887653 57899999999999999998865431 257899999999887764
Q ss_pred CCCeeEEEEcCCcc-----c--hHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~-----~--~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.++||+|++|.... . ..++++.+.+.|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 57999999986421 1 367889999999999999986
No 67
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.51 E-value=9e-14 Score=98.94 Aligned_cols=93 Identities=20% Similarity=0.388 Sum_probs=73.6
Q ss_pred EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 74 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 74 vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
|||+|||+|..+..++..++. ..+++++|+++++++.++++....+. +++++++|+.++ +.. .++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence 799999999999999998732 37999999999999999999988665 689999999885 332 5799999
Q ss_pred EEc-C-----CccchHHHHHHHHhccCCCe
Q 026461 152 FVD-A-----DKDNYCNYHERLMKLLKVGG 175 (238)
Q Consensus 152 ~~d-~-----~~~~~~~~~~~~~~~L~~gG 175 (238)
++. . +......+++.+.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 993 3 22345678899999999998
No 68
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.51 E-value=3.2e-13 Score=105.32 Aligned_cols=165 Identities=19% Similarity=0.282 Sum_probs=104.5
Q ss_pred hcCCCCCccCcHhHHHHHHHH---HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC
Q 026461 45 ADHPWAMMGTAPDAGQLMAML---LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD 121 (238)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~ 121 (238)
...+|..-...-+..+.-..+ +....-.++||+|||.|..|..|+..+ .+++++|+++.+++.|++.+...
T Consensus 15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--- 88 (201)
T PF05401_consen 15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--- 88 (201)
T ss_dssp SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---
Confidence 345666544444443332322 233344689999999999999999875 59999999999999999988643
Q ss_pred CcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC------ccchHHHHHHHHhccCCCeEEEEeccc-----cCccccC
Q 026461 122 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTL-----WGGTVAV 190 (238)
Q Consensus 122 ~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~-----~~g~~~~ 190 (238)
++|++.+++..+..| .++||+|++... ......++..+...|+|||.+|+-..- ..|+.+
T Consensus 89 ~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~- 159 (201)
T PF05401_consen 89 PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA- 159 (201)
T ss_dssp SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--
T ss_pred CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc-
Confidence 469999999977755 589999998742 234556788888999999999995542 112211
Q ss_pred CCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEE
Q 026461 191 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR 235 (238)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~ 235 (238)
+ .....+-|++.+.+-..+++.--..+..-.+++
T Consensus 160 ----------g-a~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 160 ----------G-AETVLEMLQEHLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp ------------HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred ----------c-hHHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence 2 344466677777666666655444454444544
No 69
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=3.2e-13 Score=114.89 Aligned_cols=105 Identities=22% Similarity=0.375 Sum_probs=85.1
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.+...+..+|||||||+|+.+..+++..+..++|+++|+++++++.|++++...+. +++.++.+|+.+.++.
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~------- 146 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE------- 146 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------
Confidence 34455678999999999999999999876457899999999999999999999887 4699999998765443
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.++||+|+++......+ ..+.+.|+|||.+++.
T Consensus 147 ~~~fD~Ii~~~g~~~ip---~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHhH---HHHHHhcCCCCEEEEE
Confidence 36899999986544333 4467889999998874
No 70
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.51 E-value=2.3e-13 Score=117.83 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=89.4
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecch
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEA 131 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~ 131 (238)
++....-++..+ ......+|||+|||+|..++.+++..| ..+|+++|+++.+++.++++++.++.. .+++++.+|+
T Consensus 213 LD~GtrllL~~l-p~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 213 LDIGARFFMQHL-PENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred cChHHHHHHHhC-CcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence 444444444443 333346999999999999999999877 789999999999999999999887643 3689998887
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEEe
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+.++ .++||+|+++.+.+ ....++..+.++|+|||.+++.
T Consensus 291 l~~~~--------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 291 LSGVE--------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cccCC--------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 54321 35899999985421 1246788888999999988775
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=4.5e-13 Score=112.96 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=85.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.++++|||+|||+|..++.++.. + ..+|+++|+++.+++.+++++..+++..++.+..++.... ..++|
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~f 226 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKA 226 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCc
Confidence 35689999999999999888763 3 4699999999999999999999988877777777652211 14699
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|+|+++........++..+.+.|+|||.+++..+.
T Consensus 227 DlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 227 DVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred eEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99999876666678888999999999999998755
No 72
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.51 E-value=8.3e-13 Score=103.72 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461 59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 138 (238)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~ 138 (238)
..+|...+...++++|||+|||+|..+..++... .+|+++|+++.+++.+++++...+. +++++.+|..+..
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--- 79 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---
Confidence 3455555556677899999999999999999854 3899999999999999999987775 4888998876532
Q ss_pred HhcccCCCCeeEEEEcCCcc------------------------chHHHHHHHHhccCCCeEEEEec
Q 026461 139 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.++||+|+++.+.. .+..+++.+.++|+|||.+++..
T Consensus 80 ------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 ------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 35899999874321 03457888889999999988754
No 73
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=1.1e-13 Score=114.71 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=80.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++.+|||||||+|..+..++..+| ..+|+++|+++.+++.|++. +++++++|+.+..+ .++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~ 89 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPD 89 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCC
Confidence 45678999999999999999999876 78999999999999998752 47889999865421 479
Q ss_pred eeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461 148 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 148 fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
||+|++... ..+....++.+.+.|+|||.+++.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 999999753 345577889999999999999885
No 74
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.50 E-value=1.2e-13 Score=96.35 Aligned_cols=92 Identities=24% Similarity=0.309 Sum_probs=74.2
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc
Q 026461 75 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 154 (238)
Q Consensus 75 LeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d 154 (238)
||+|||+|..+..+++. + ..+|+++|+++.+++.+++..... ++.+.++|+.+. + +++++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~------~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P------FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S------S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c------cccccccccccc
Confidence 89999999999999997 3 789999999999999999986543 466999998776 2 236899999987
Q ss_pred CC---ccchHHHHHHHHhccCCCeEEEE
Q 026461 155 AD---KDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 155 ~~---~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.. ......+++++.+.|||||++++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 53 35667899999999999999986
No 75
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.50 E-value=7.7e-13 Score=117.65 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=100.4
Q ss_pred cCcHhHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc
Q 026461 53 GTAPDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 130 (238)
Q Consensus 53 ~~~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (238)
-++...+.+...++ ...++.+|||+++|.|+-|.++++.+...+.|++.|+++..++..++++.+.|+. ++.+...|
T Consensus 94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D 172 (470)
T PRK11933 94 YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFD 172 (470)
T ss_pred EEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCc
Confidence 34455555555555 4567789999999999999999999987799999999999999999999999985 48888899
Q ss_pred hhHHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461 131 ALSVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
+....+.+ .+.||.|++|++++.. ..++..++++|+|||+||-+.+.+
T Consensus 173 ~~~~~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 173 GRVFGAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhhhhhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 87654443 4689999999765421 456777789999999999777654
No 76
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.50 E-value=5.7e-13 Score=115.33 Aligned_cols=115 Identities=21% Similarity=0.326 Sum_probs=96.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhccc
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
+.....+++||++-|+||..+++.|.+- ..+||+||+|..+++.|++|++.+|+. .++.|+++|+.+++......
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~-- 287 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR-- 287 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc--
Confidence 3444468899999999999999999752 349999999999999999999999986 56899999999999988654
Q ss_pred CCCCeeEEEEcCC------------ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 144 NEGSFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 144 ~~~~fD~V~~d~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
..+||+|++|.+ ..++......+.++|+|||++++.++..
T Consensus 288 -g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 -GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred -CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 569999999964 1335667777889999999999987764
No 77
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.8e-13 Score=112.81 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=92.3
Q ss_pred CCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE
Q 026461 47 HPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126 (238)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (238)
.+-+.......+.+.|..+.. ++++|||+|||+|..++..+.. . ..+|+++|++|.+++.+++|++.++....++.
T Consensus 141 FGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~ 216 (300)
T COG2264 141 FGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQA 216 (300)
T ss_pred cCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhc
Confidence 334444444455555555544 7889999999999999988874 3 57899999999999999999999988653333
Q ss_pred EecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
...+..+... .++||+|+.+.-..-...+...+.++|+|||.++++.++
T Consensus 217 ~~~~~~~~~~--------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 217 KGFLLLEVPE--------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ccccchhhcc--------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 3333323211 469999998864444567777888999999999998876
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.49 E-value=3.5e-12 Score=105.45 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=84.1
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461 58 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 136 (238)
Q Consensus 58 ~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~ 136 (238)
...++..+.. ..++++|||+|||+|..++.++.. . ..+|+++|+++.+++.|++++..+++..++.+..+
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~------- 176 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG------- 176 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------
Confidence 3444444443 346789999999999999887764 3 34799999999999999999998887544544332
Q ss_pred HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
..+||+|+.+........++..+.+.|+|||.+++.+..
T Consensus 177 --------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 177 --------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred --------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 137999998876666678888999999999999997654
No 79
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.48 E-value=4.7e-13 Score=125.23 Aligned_cols=110 Identities=19% Similarity=0.312 Sum_probs=91.4
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchhHHHHHHHhcccC
Q 026461 66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
....++++|||+|||+|..+++++.. + ..+|+++|+|+.+++.|++|+..+++. ++++++++|+.++++.+
T Consensus 534 ~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------ 605 (702)
T PRK11783 534 GQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------ 605 (702)
T ss_pred HHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------
Confidence 33456789999999999999999985 2 357999999999999999999999986 68999999999987654
Q ss_pred CCCeeEEEEcCCc--------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461 145 EGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 145 ~~~fD~V~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.++||+|++|.+. ..+..++..+.++|+|||++++....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 4789999999642 12456777788999999999887543
No 80
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.48 E-value=8.9e-13 Score=113.91 Aligned_cols=104 Identities=24% Similarity=0.289 Sum_probs=87.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.....+||||||+|..++.+|...| +..++|+|+++.+++.+.+.+...++. ++.++++|+...+..+ ..+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~ 193 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSV 193 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCce
Confidence 3456899999999999999999987 789999999999999999999998885 4999999998776544 25899
Q ss_pred eEEEEcCCccc---------hHHHHHHHHhccCCCeEEEE
Q 026461 149 DYAFVDADKDN---------YCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 149 D~V~~d~~~~~---------~~~~~~~~~~~L~~gG~lv~ 179 (238)
|.|++.-+.++ ...+++.+.+.|+|||.+.+
T Consensus 194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 99998643211 25789999999999998887
No 81
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.47 E-value=9e-13 Score=110.57 Aligned_cols=114 Identities=20% Similarity=0.279 Sum_probs=85.9
Q ss_pred HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461 58 AGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 136 (238)
Q Consensus 58 ~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~ 136 (238)
+..+|..+... .++++|||+|||+|..++..+.. . ..+|+++|++|.+++.|++|+..+++.+++.+. ...+.
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-- 221 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-- 221 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT--
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc--
Confidence 34444444443 45679999999999999988874 3 568999999999999999999999998877663 11111
Q ss_pred HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
..++||+|+.+....-...+...+.++|+|||.++++.++.
T Consensus 222 -------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 222 -------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp -------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred -------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 14899999998766666777777889999999999988873
No 82
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=7.7e-13 Score=107.41 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=86.8
Q ss_pred HhHHHHHHHH--HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 56 PDAGQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 56 ~~~~~~l~~l--~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
...+.++..+ +...+..+|||+|||+|..+..++...+ .++|+++|+++++++.+.+++... .++.++.+|+.+
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~ 131 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARK 131 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCC
Confidence 3445555544 4556778999999999999999999887 789999999999999887776543 458999999864
Q ss_pred HH--HHHHhcccCCCCeeEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461 134 VL--DQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 134 ~l--~~~~~~~~~~~~fD~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.. ..+ .++||+|+.+....+ ....++.+.+.|||||.+++.
T Consensus 132 ~~~~~~l------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 132 PERYAHV------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred cchhhhc------cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 111 357999998764322 234578889999999999985
No 83
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=8e-13 Score=112.96 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=83.8
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
....+++|||||||+|+.+..++...+ .+|+|+|+++.++..++..-...+...++.++.+++.+... .+
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--------~~ 188 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--------LK 188 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--------cC
Confidence 334678999999999999999998643 47999999999887655443333334579999998866511 37
Q ss_pred CeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 147 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 147 ~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
+||+|++.+. ..+...+++.+.+.|+|||.++++.....+
T Consensus 189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred CcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 8999998643 345678899999999999999998765443
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.46 E-value=1.9e-12 Score=106.83 Aligned_cols=117 Identities=24% Similarity=0.389 Sum_probs=90.5
Q ss_pred cHhHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 55 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 55 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+....++..+... .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|+.
T Consensus 70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 34445555554443 2456899999999999999999876 679999999999999999999988875 6999999987
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCccc-----------------------------hHHHHHHHHhccCCCeEEEEec
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKDN-----------------------------YCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+.++ .++||+|+++.+... +..+++.+.++|+|||.+++..
T Consensus 148 ~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 148 EPLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ccCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6432 478999998643110 2356778889999999999853
No 85
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.45 E-value=1.1e-12 Score=111.60 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=90.6
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461 64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
......+..+|||||||+|..++.+++..| ..+++++|. +.+++.+++++...++.++++++.+|+.+. .
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~------ 212 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S------ 212 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C------
Confidence 334455678999999999999999999987 789999998 789999999999999988999999998653 1
Q ss_pred CCCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccccC
Q 026461 144 NEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWG 185 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (238)
.+.+|+|++....+ .....++.+.+.|+|||.+++.+..+.
T Consensus 213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 13579988764322 235688999999999999999887653
No 86
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=8.6e-13 Score=119.04 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=82.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
+.+|||+|||+|..++.++..++ ..+|+++|+|+.+++.|++++...++.++++++++|..+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 46899999999999999998876 789999999999999999999998888889999999765322 368999
Q ss_pred EEEcCCc-----------------------------cchHHHHHHHHhccCCCeEEEEe
Q 026461 151 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 151 V~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 9986420 01234556667899999999986
No 87
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.45 E-value=6.5e-12 Score=99.42 Aligned_cols=124 Identities=10% Similarity=-0.024 Sum_probs=93.7
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
.+...+.++..+.......++||++||+|..++.++... ..+|+++|.++.+++.+++|++..++.++++++.+|+.+
T Consensus 33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 333344455544444567899999999999999999864 358999999999999999999999987789999999988
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCc--cchHHHHHHHH--hccCCCeEEEEecc
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDNT 182 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~ 182 (238)
.+..+... ...||+||+|.+. ..+...++.+. .+|+++|++++...
T Consensus 111 ~l~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 111 ALKFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 77654221 2358999999754 33455555554 47999999998643
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=2.1e-12 Score=101.80 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-EEEEecchhHHHHHH
Q 026461 60 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL 138 (238)
Q Consensus 60 ~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~~~ 138 (238)
.++.......+.++|||+|||+|..+..++.. ..+|+++|+++++++.+++++...+..++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 33444444467789999999999999999986 57999999999999999999988887654 8889988765422
Q ss_pred HhcccCCCCeeEEEEcCCcc------------------------chHHHHHHHHhccCCCeEEEEe
Q 026461 139 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+||+|+.+.+.. ....+++.+.+.|+|||.+++-
T Consensus 88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34899999874311 1345788888999999987763
No 89
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.45 E-value=2.2e-12 Score=107.96 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=89.5
Q ss_pred CCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCchh
Q 026461 30 YPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRET 107 (238)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~--~~v~~iD~~~~~ 107 (238)
-+..+..+-+.+....+.+... .+.....+.+..... ....+|||+|||+|+.+..++..++.. ..++|+|+++.+
T Consensus 47 ~~~d~~~~~~ar~~fl~~g~y~-~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~ 124 (272)
T PRK11088 47 DPGDNKEMMQARRAFLDAGHYQ-PLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVA 124 (272)
T ss_pred CCCcCHHHHHHHHHHHHCCChH-HHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHH
Confidence 3345556666665555443322 122233333333222 245689999999999999999877532 379999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 108 YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 108 ~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
++.|++.. .++.+.++|+.+. + + ..++||+|+.... +..++++.+.|+|||.+++-
T Consensus 125 l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~sfD~I~~~~~----~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 125 IKYAAKRY------PQVTFCVASSHRL-P-F-----ADQSLDAIIRIYA----PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred HHHHHHhC------CCCeEEEeecccC-C-C-----cCCceeEEEEecC----CCCHHHHHhhccCCCEEEEE
Confidence 99998753 3588899887664 2 1 2579999997543 23457788999999999874
No 90
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.44 E-value=1.2e-12 Score=108.87 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 137 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~ 137 (238)
...++.. +...+..+|||||||+|..+..++... ..+|+++|+++.+++.+++++.. .+++.+..+|+.+. .
T Consensus 41 ~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~--~ 112 (263)
T PTZ00098 41 TTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK--D 112 (263)
T ss_pred HHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC--C
Confidence 3334433 345677899999999999999998754 46999999999999999987643 35799999998643 1
Q ss_pred HHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 138 LLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
...++||+|++... ..+...+++.+.++|+|||.+++.+...
T Consensus 113 -----~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 113 -----FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred -----CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 12579999998421 1256788999999999999999987654
No 91
>PLN02823 spermine synthase
Probab=99.44 E-value=1.6e-12 Score=111.12 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=87.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
..++++||.||+|.|..+.++++..+ ..+|++||+++..++.+++++...+ + .++++++.+|+.+++...
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------ 173 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------ 173 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence 44688999999999999999988644 5789999999999999999986432 1 368999999999988653
Q ss_pred CCCeeEEEEcCCcc---------chHHHHH-HHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~---------~~~~~~~-~~~~~L~~gG~lv~~ 180 (238)
.++||+||+|...+ ...++++ .+.+.|+|||+++++
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999995321 1356887 889999999999875
No 92
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1.3e-12 Score=110.17 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=80.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++++|||+|||+|..+.+++.. +.+|+++|+++.+++.+++++...++ ++++...|.... .+ .++
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~~ 184 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QEE 184 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cCC
Confidence 346779999999999999999974 57999999999999999999988887 588888887543 11 478
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEE
Q 026461 148 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 148 fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
||+|++... ......+++.+.+.|+|||++++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987642 23567889999999999998655
No 93
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.44 E-value=3.7e-12 Score=100.13 Aligned_cols=127 Identities=21% Similarity=0.255 Sum_probs=97.4
Q ss_pred CccCcHhHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461 51 MMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 51 ~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
.|+.+...+.++..+... ..+.++||+.||+|..++..++.- ..+|+.||.++.++...++|++..+..++++++.+
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 456667777777777766 788999999999999999877642 46999999999999999999999999888999999
Q ss_pred chhHHHHHHHhcccCCCCeeEEEEcCCcc--c-hHHHHHHHH--hccCCCeEEEEecc
Q 026461 130 EALSVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDNT 182 (238)
Q Consensus 130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~~ 182 (238)
|+...+..+... ..+||+||+|.+-. . +...++.+. .+|+++|+|++...
T Consensus 100 d~~~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 100 DAFKFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp SHHHHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CHHHHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 999888776433 68999999997533 2 366777776 78999999999753
No 94
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.43 E-value=3.4e-14 Score=100.68 Aligned_cols=96 Identities=24% Similarity=0.335 Sum_probs=62.9
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc
Q 026461 75 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 154 (238)
Q Consensus 75 LeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d 154 (238)
||||||+|..+..++..++ ..+++++|+|+.+++.+++.+...+... ......+..+..... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence 7999999999999999986 8999999999999999999988876533 334433333332211 12599999987
Q ss_pred CC---ccchHHHHHHHHhccCCCeEE
Q 026461 155 AD---KDNYCNYHERLMKLLKVGGIA 177 (238)
Q Consensus 155 ~~---~~~~~~~~~~~~~~L~~gG~l 177 (238)
.. .......++.+.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 43 356678899999999999986
No 95
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=2.8e-12 Score=104.59 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=89.3
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.+...++.+|||+|||+|..+..++..+++.++++++|+++..++.++++.. ....++++..+|+.+.. + .
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~-----~ 84 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F-----P 84 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C-----C
Confidence 4455677899999999999999999987547899999999999999998733 22356899998875531 1 2
Q ss_pred CCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 145 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 145 ~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
.++||+|++... ..+...+++.+.++|+|||.+++....+..
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 478999998743 345678999999999999999987765443
No 96
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.43 E-value=2.2e-12 Score=105.39 Aligned_cols=108 Identities=17% Similarity=0.309 Sum_probs=88.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++++..+|+.+.. . ..++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~ 121 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F-----PDNS 121 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----CCCC
Confidence 34567999999999999999999876568999999999999999999887666667999999986642 1 1478
Q ss_pred eeEEEEcC---CccchHHHHHHHHhccCCCeEEEEecc
Q 026461 148 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 148 fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
||+|++.. .......+++.+.++|+|||.+++.+.
T Consensus 122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 99999764 344567889999999999999887554
No 97
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=8.6e-13 Score=109.09 Aligned_cols=113 Identities=14% Similarity=0.222 Sum_probs=85.0
Q ss_pred cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461 55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134 (238)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (238)
....+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++.. ...++++|+.+.
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~ 97 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC
Confidence 3444444444444445689999999999999988863 5799999999999999987642 246788888654
Q ss_pred HHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 135 LDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+ + ..++||+|++.. +..+....+.++.+.|+|||.+++....
T Consensus 98 -~-~-----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 98 -P-L-----ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred -c-C-----CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 2 1 256899999874 3456678899999999999999987543
No 98
>PRK06922 hypothetical protein; Provisional
Probab=99.42 E-value=2.3e-12 Score=117.02 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=87.8
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461 64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
.+....++.+|||||||+|..+..++..++ ..+|+|+|+++.+++.|+++....+ .+++++++|+.+....+
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f----- 483 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF----- 483 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc-----
Confidence 344455778999999999999999998876 8899999999999999998876544 35888999987642112
Q ss_pred CCCCeeEEEEcCCc----------------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461 144 NEGSFDYAFVDADK----------------DNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 144 ~~~~fD~V~~d~~~----------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.+++||+|++.... .....+++.+.+.|||||.+++.+..
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 25789999875321 23467888999999999999997654
No 99
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.42 E-value=3.5e-12 Score=105.38 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=79.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
+.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|++|+..++ ++++++|..+.++... .++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CCCEeE
Confidence 35899999999999999998776 6799999999999999999998765 4788999877554321 357999
Q ss_pred EEEcCCccc-----------------------------hHHHHHHHHhccCCCeEEEEe
Q 026461 151 AFVDADKDN-----------------------------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 151 V~~d~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|++|.+... +..++..+.++|+|||.+++.
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999863210 235666667899999999986
No 100
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.2e-11 Score=102.64 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=90.3
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.++....-++..+.... ..+|||+|||.|..++.+++..| ..+++.+|++..+++.+++|+..++..+. .+...|..
T Consensus 142 ~lD~GS~lLl~~l~~~~-~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~ 218 (300)
T COG2813 142 KLDKGSRLLLETLPPDL-GGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY 218 (300)
T ss_pred CcChHHHHHHHhCCccC-CCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc
Confidence 45555566666655443 44999999999999999999987 89999999999999999999999888653 66777765
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCccc----h----HHHHHHHHhccCCCeEEEE
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKDN----Y----CNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~----~----~~~~~~~~~~L~~gG~lv~ 179 (238)
+-. .++||+|+++.+.+. . ..++....++|++||-|.+
T Consensus 219 ~~v---------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 219 EPV---------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred ccc---------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 542 359999999865332 2 3788888899999996544
No 101
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.42 E-value=2.8e-12 Score=108.76 Aligned_cols=109 Identities=14% Similarity=0.094 Sum_probs=81.5
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++++|||||||+|+.+..++... ..+|+|+|+++.++..++..-...+...++.+..+++.+... ..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--------~~~ 188 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--------LYA 188 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--------CCC
Confidence 3456899999999999999888753 248999999999887654433322333568888888755421 358
Q ss_pred eeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 148 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 148 fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
||+||+.+. ..+....++.+.+.|+|||.+++......|
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 999998753 345568899999999999999998765444
No 102
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.41 E-value=2.5e-12 Score=110.58 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=86.8
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
+......++..+. .....+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++. .+++.+|..+
T Consensus 181 lD~gt~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~ 256 (342)
T PRK09489 181 LDVGSQLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS 256 (342)
T ss_pred CCHHHHHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc
Confidence 3344454555443 33456899999999999999999876 789999999999999999999998864 4667777644
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCcc--------chHHHHHHHHhccCCCeEEEE
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~ 179 (238)
. . .++||+|+++.+.+ ....++..+.++|+|||.+++
T Consensus 257 ~---~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 257 D---I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred c---c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 2 1 47899999985432 236788888999999998765
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=7.6e-12 Score=101.70 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=79.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+..+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++...+. +++++.+|..+.++ .++|
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~f 102 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPF 102 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCe
Confidence 44579999999999999998874 3 45999999999999999999988775 48889988766432 4689
Q ss_pred eEEEEcCCcc------------------------chHHHHHHHHhccCCCeEEEE
Q 026461 149 DYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 149 D~V~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~ 179 (238)
|+|+++.+.. .+..+++.+.++|++||.+++
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999984211 024567778899999999886
No 104
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.40 E-value=4.7e-12 Score=101.43 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=79.0
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
+....++.+|||+|||+|..+..++..++ ..+++|+|+|+++++.|++++ .++++.++|+.+. . .
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~--~------~ 102 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDP--F------K 102 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCC--C------C
Confidence 33455677999999999999999998765 689999999999999998764 2467888887662 1 2
Q ss_pred CCCeeEEEEcCCcc-----chHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 145 EGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 145 ~~~fD~V~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
.++||+|++..... .....++++.+.+ ++.+++.+...+.
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 57999999875432 2356677777776 4677777765444
No 105
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=3.1e-12 Score=100.60 Aligned_cols=104 Identities=17% Similarity=0.222 Sum_probs=81.3
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
+...+++++||+|||.|..+++||+. +-.|+++|.|+..++.+++.....+++ ++....|..+.. + .
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~--~------~ 92 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD--F------P 92 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---------T
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc--c------c
Confidence 45567899999999999999999985 679999999999999999988888874 888888876652 2 4
Q ss_pred CCeeEEEEc-----CCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 146 GSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 146 ~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+.||+|+.. ...+..+..++.+...++|||++++...
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 689999864 2455667889999999999999888543
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=5.2e-12 Score=105.70 Aligned_cols=116 Identities=24% Similarity=0.411 Sum_probs=88.0
Q ss_pred cHhHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 55 APDAGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 55 ~~~~~~~l~~l~---~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
.++...++..+. ...++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++. .+...+++++.+|.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 344455555444 234567999999999999999999886 7899999999999999999987 34446799999987
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCc-----------------------------cchHHHHHHHHhccCCCeEEEEe
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+.++ .++||+|+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 168 ~~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 168 FEPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 54321 3689999986421 11245667777999999999984
No 107
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.39 E-value=1.5e-11 Score=102.45 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=91.5
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
..++++||.||-|.|..+..++++.+ -.+++.||+++..++.+++++.... . ++|++++.+|+.+++...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------ 146 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------ 146 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence 34558999999999999999999876 7899999999999999999997644 2 379999999999999876
Q ss_pred CCCeeEEEEcCCcc-c------hHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKD-N------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~-~------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+||+|++|.... . ..++++.+.++|+++|+++..
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 45899999996432 2 378999999999999999997
No 108
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=4.9e-12 Score=113.87 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 137 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~ 137 (238)
...++..+ ...++.+|||||||+|..+..++... +.+|+++|+++.+++.|+++.. +...+++|.++|+.+..
T Consensus 255 te~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 255 TKEFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred HHHHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--
Confidence 34444433 34567799999999999999999865 4699999999999999998765 44457999999986541
Q ss_pred HHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 138 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
+ +.++||+|++... ..+...+++.+.+.|+|||.+++.+...
T Consensus 328 ~-----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 328 Y-----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred C-----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 1 1468999998643 3456788999999999999999987653
No 109
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.3e-11 Score=106.64 Aligned_cols=130 Identities=21% Similarity=0.277 Sum_probs=103.5
Q ss_pred CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461 50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128 (238)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (238)
+...++....++...++...++.+|||.+++.|+=|.++++.+... ..|+++|.++..+...++++.+.|+.+ +.+.+
T Consensus 136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~ 214 (355)
T COG0144 136 GLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVN 214 (355)
T ss_pred eEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEe
Confidence 3345667778888888888888999999999999999999998753 456999999999999999999999976 88888
Q ss_pred cchhHHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEeccc
Q 026461 129 SEALSVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.|+........ ..++||.|++|++++.. .+++..++++|||||+|+.+.+.
T Consensus 215 ~d~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 215 KDARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ccccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 88765543331 12369999999764331 35677778999999999987766
Q ss_pred c
Q 026461 184 W 184 (238)
Q Consensus 184 ~ 184 (238)
.
T Consensus 291 ~ 291 (355)
T COG0144 291 L 291 (355)
T ss_pred C
Confidence 4
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.39 E-value=7.4e-12 Score=108.95 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=88.9
Q ss_pred CcHhHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 54 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
..++...++..+... .+..+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|++|+...+. +++++++|..
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~ 310 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWF 310 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchh
Confidence 345566666666543 3456999999999999999998766 78999999999999999999988764 6999999986
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCcc----------------------------chHHHHHHHHhccCCCeEEEEe
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKD----------------------------NYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~----------------------------~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.... ..++||+|+++.+.- .+..+++.+.+.|+|||.+++.
T Consensus 311 e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 311 DTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred ccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 53110 135899999975310 0234555556799999998875
No 111
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.38 E-value=3.7e-12 Score=104.00 Aligned_cols=102 Identities=20% Similarity=0.302 Sum_probs=82.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
..+.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++.+. .++.++.+|+.+... ..++|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-------~~~~f 99 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-------EDSSF 99 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-------CCCce
Confidence 3457899999999999999999876 7789999999999998887653 368899998865421 25789
Q ss_pred eEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 149 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 149 D~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|+|++... ..+....++.+.+.|+|||.+++....
T Consensus 100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99998753 335678899999999999999987543
No 112
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.38 E-value=9.6e-12 Score=103.80 Aligned_cols=120 Identities=22% Similarity=0.349 Sum_probs=89.5
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC-CcEEEEecchh
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEAL 132 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~ 132 (238)
-.+..-..+.. ..+.++||++-|++|..+++.+..- ..+|++||.|..+++.+++|+..++++ .+++++.+|+.
T Consensus 110 DqR~nR~~v~~---~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 110 DQRENRKWVRK---YAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp GGHHHHHHHHH---HCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred HHHhhHHHHHH---HcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 33444444444 4567899999999999999877642 358999999999999999999999987 67999999999
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCc---------cchHHHHHHHHhccCCCeEEEEecc
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~---------~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+++..+.. .++||+|++|.+. ..|..++..+.++|+|||+|++...
T Consensus 185 ~~l~~~~~----~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 185 KFLKRLKK----GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHH----TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHhc----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 98877543 4799999999642 3456778888899999999887554
No 113
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.37 E-value=1.5e-11 Score=105.06 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=81.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.++.+|||+|||+|..++.++.. ..+|+++|+++.+++.|+++++..++ ++++|+++|+.++.... .+.|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~ 241 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP 241 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence 35689999999999999999983 46999999999999999999999998 56999999998875432 3579
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+|++|.+.......+......++|++++.++
T Consensus 242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred eEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence 99999987655444443334556787777764
No 114
>PRK03612 spermidine synthase; Provisional
Probab=99.37 E-value=4.7e-12 Score=114.82 Aligned_cols=107 Identities=19% Similarity=0.320 Sum_probs=85.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH--HHHc---CC-CCcEEEEecchhHHHHHHHhc
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY 141 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~l~~~~~~ 141 (238)
..++++||+||||+|..+..++++ ++..+|+++|+++++++.++++ +... .+ .++++++.+|+.+.+...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 457889999999999999999875 4247999999999999999984 3321 12 258999999999887654
Q ss_pred ccCCCCeeEEEEcCCccc--------hHHHHHHHHhccCCCeEEEEec
Q 026461 142 SENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.++||+|++|...+. ..++++.+.++|+|||+++++.
T Consensus 371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 579999999964221 2468899999999999999864
No 115
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.36 E-value=1.2e-12 Score=105.66 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=78.6
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-----cEEEEecchhHHHHHHHhcccCCC
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
++|||+|||+|..+..||+. +..|+|||+++++++.|++........+ ++++.+.++... .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence 67999999999999999985 5799999999999999999944433322 356666665444 46
Q ss_pred CeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 147 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 147 ~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.||.|++.-. ..+..+++..+.++|+|+|.+++.++-
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 7999998743 334578888999999999999997754
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.36 E-value=1.1e-11 Score=106.49 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=93.1
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+.+..+..+..++...++.+|||+|||+|..++..+.. ..+++|+|+++.+++.+++|+..+++.+ +.+.++|+.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~ 240 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT 240 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence 355666666666666667779999999999998876653 5799999999999999999999999876 899999987
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEe
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+. +. ..++||+|++|.+. ..+..+++.+.+.|+|||.+++-
T Consensus 241 ~l-~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 241 KL-PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cC-Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 64 21 14799999998531 11467888889999999988874
No 117
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.35 E-value=2e-11 Score=97.08 Aligned_cols=101 Identities=25% Similarity=0.372 Sum_probs=84.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~ 152 (238)
.+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++. ++.++.+|+...+..+. .++++|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~----~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLF----PPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHS----TTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcc----cCCchheEE
Confidence 899999999999999999988 899999999999999999999998884 59999999999888774 358999999
Q ss_pred EcC---Ccc--------chHHHHHHHHhccCCCeEEEE
Q 026461 153 VDA---DKD--------NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 153 ~d~---~~~--------~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+.- ++. -.+.+++.+.+.|+|||.|.+
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 863 211 137899999999999998876
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=4.1e-11 Score=97.91 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461 59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 138 (238)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~ 138 (238)
..++.......++.+|||||||+|..+..+++. ..+++++|+++..++.+++++...+. .+++..++..+.....
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence 445555544556789999999999999988874 46899999999999999999877665 4788888887664322
Q ss_pred HhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEecc
Q 026461 139 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.++||+|++... ..+....++.+.+.|+|||.+++...
T Consensus 112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 479999998642 33556788999999999999998653
No 119
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.35 E-value=1.5e-11 Score=99.47 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=85.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++. ...++++..+|+.+.. . ..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~ 106 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNS 106 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCc
Confidence 4467899999999999999999988744799999999999999998875 3356899999987642 1 1468
Q ss_pred eeEEEEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 148 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 148 fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
||+|++.. ........++.+.+.|+|||.+++.+..
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998763 3445678889999999999999886543
No 120
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=1.5e-11 Score=107.51 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=81.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
...++.+|||||||+|..+..+++.. +.+|+++|+++++++.|++++. ++ .+++..+|..+. .+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~ 227 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG 227 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC
Confidence 34567799999999999999999865 4699999999999999999874 32 378888886543 36
Q ss_pred CeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 147 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 147 ~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
+||.|+.... ...+..+++.+.++|+|||.+++.....
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 8999986532 3345788999999999999999976543
No 121
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.34 E-value=2.2e-11 Score=100.25 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=86.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC---CCcEEEEecchhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
..++++||-||-|.|..+..++++.+ ..+|++||+++..++.+++++..... ++|++++.+|+..++...
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------ 146 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------ 146 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence 44799999999999999999987643 67999999999999999999876432 368999999999998875
Q ss_pred CC-CeeEEEEcCCcc-------chHHHHHHHHhccCCCeEEEEec
Q 026461 145 EG-SFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 145 ~~-~fD~V~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.+ +||+|++|...+ ...++++.+.+.|+|||++++..
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 45 899999996431 13789999999999999999875
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.6e-11 Score=102.85 Aligned_cols=118 Identities=21% Similarity=0.397 Sum_probs=87.8
Q ss_pred cHhHHHHHHHHH-hhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 55 APDAGQLMAMLL-RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 55 ~~~~~~~l~~l~-~~~-~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+++..++..+. ... .+.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|++|+..+++ .++.++.+|..
T Consensus 93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf 170 (280)
T COG2890 93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF 170 (280)
T ss_pred CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence 445666666533 111 222799999999999999999987 78999999999999999999999998 55666666543
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCC---cc-------------------------chHHHHHHHHhccCCCeEEEEeccc
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+.+ .++||+|+++.+ .. .+..++..+...|+|||++++.--.
T Consensus 171 ---~~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 171 ---EPL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred ---ccc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 333 469999998742 11 1245666667899999999986433
No 123
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.33 E-value=1.2e-11 Score=99.74 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=76.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------------CCcEEEEecchhHHH
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVL 135 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~l 135 (238)
++.+|||+|||.|..+++||+. +-+|+++|+|+.+++.+.+. .++ ..+++++++|..+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5579999999999999999974 67999999999999976432 121 246899999998763
Q ss_pred HHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 136 DQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
... .++||.|+-.. +......+++.+.++|+|||++++....
T Consensus 108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 321 35788887432 2334467899999999999986665443
No 124
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.32 E-value=6.1e-11 Score=95.97 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=92.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461 64 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
.+........+||||||.|.+.+.+|...| +..++|||+....+..+.+.+.+.++. +++++++|+.+++..+.+
T Consensus 42 ~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~--- 116 (227)
T COG0220 42 ALFGNNNAPIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP--- 116 (227)
T ss_pred HHhCCCCCcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC---
Confidence 343333346899999999999999999988 789999999999999999999999986 799999999999988842
Q ss_pred CCCCeeEEEEc---CCcc--c------hHHHHHHHHhccCCCeEEEE
Q 026461 144 NEGSFDYAFVD---ADKD--N------YCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 144 ~~~~fD~V~~d---~~~~--~------~~~~~~~~~~~L~~gG~lv~ 179 (238)
.++.|-|++. .|+. + .+.+++.+.+.|+|||.|.+
T Consensus 117 -~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 117 -DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred -CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 4699988874 3321 1 47899999999999999987
No 125
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.32 E-value=2.5e-11 Score=93.00 Aligned_cols=108 Identities=25% Similarity=0.294 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461 56 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134 (238)
Q Consensus 56 ~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (238)
.....++..+.. ..+.++|||||||.|..+..++.. ..+|+++|+++.+++. .++.....+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP 72 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence 445667777765 567889999999999999999764 3499999999999887 1122222222222
Q ss_pred HHHHHhcccCCCCeeEEEEcCCc---cchHHHHHHHHhccCCCeEEEEecccc
Q 026461 135 LDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
.. ..++||+|++.... .+...+++.+.++|+|||++++.....
T Consensus 73 ~~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 73 PF-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HC-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hc-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 11 16899999987643 356788999999999999999987653
No 126
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.31 E-value=2.9e-11 Score=97.29 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=73.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~ 145 (238)
..++.+|||||||+|.++..+++..++.++|++||+++. .+. .+++++++|+.+. ++.+... ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence 346679999999999999999998866789999999881 122 3489999998763 2222111 125
Q ss_pred CCeeEEEEcCCccc--------------hHHHHHHHHhccCCCeEEEEe
Q 026461 146 GSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 146 ~~fD~V~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
++||+|+++..+.. ....++.+.+.|+|||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 78999999753211 134678888999999999985
No 127
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.31 E-value=4.9e-11 Score=96.65 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=80.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++.+|||+|||+|..+..++.. ..+|+|+|+++++++.|++++...+..+++.+.++|+.+. .++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence 346789999999999999999874 4599999999999999999998877666799999997654 368
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEec
Q 026461 148 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
||+|++... .......+..+.+.+++++++.+.+
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 999987432 1234566777888888877777643
No 128
>PTZ00146 fibrillarin; Provisional
Probab=99.31 E-value=3.2e-11 Score=100.48 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=82.8
Q ss_pred cHhHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 55 APDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
+.-.+.++.-+- ...+..+|||+|||+|.++.+++..+.+.++|+++|+++.+.+...+..... .++.++.+|+.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence 333344444333 2456679999999999999999999876789999999987655444433221 46888999986
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEe
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~ 180 (238)
....... ..+.+|+||+|....+.. .++.++.+.|||||.+++.
T Consensus 192 ~p~~y~~----~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 192 YPQKYRM----LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred Chhhhhc----ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 4311110 135899999997544433 4455778899999999983
No 129
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=2.4e-11 Score=109.37 Aligned_cols=109 Identities=26% Similarity=0.295 Sum_probs=81.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
++...+.++|||||||+|..+..+++.. .+|+++|+++.+++.+++.. +...+++++++|+......+ +
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~ 100 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----S 100 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----C
Confidence 3334456799999999999999999863 58999999999998776532 33356899999985421111 2
Q ss_pred CCCeeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEecccc
Q 026461 145 EGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
.++||+|++...... ...+++.+.+.|+|||++++.+..+
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 478999998753222 4678889999999999999977654
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.31 E-value=2.8e-11 Score=103.57 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=79.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
+..+|||||||+|..+..+++..+ ..+|+++|+++++++.++++... .+++++.+|+.+. + + ..++||
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFD 180 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYAD 180 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCcee
Confidence 456999999999999999998775 57999999999999999987542 3588899998654 1 1 247899
Q ss_pred EEEEcCC---ccchHHHHHHHHhccCCCeEEEEe
Q 026461 150 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 150 ~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+|++... ..+....++++.+.|+|||.+++-
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9998643 234567899999999999998774
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.31 E-value=7e-11 Score=105.39 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=84.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+..+|||+|||+|..++.++... .+|+++|+++++++.|++++..+++. +++++.+|+.+.+....- ...+|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~---~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW---ALGGF 368 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh---hcCCC
Confidence 355799999999999999999864 59999999999999999999988875 599999999876543210 13579
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+|++|.+.......++.+.+ +++++++.++
T Consensus 369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999999877666777766655 6888887775
No 132
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.30 E-value=8.6e-11 Score=104.55 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=84.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+..+|||+|||+|..++.++... .+|+++|+++.+++.|++|+..+++ ++++++.+|+.+.++.+... ..+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~---~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWA---GQIP 363 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhc---CCCC
Confidence 345799999999999999999863 5899999999999999999999887 46999999998876654211 3579
Q ss_pred eEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+|++|.+... ...+++.+. .++|++++.++
T Consensus 364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 99999987555 567777654 47898887764
No 133
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.29 E-value=8.9e-11 Score=97.74 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHH----HcC------------------
Q 026461 70 NAKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIK----KAG------------------ 119 (238)
Q Consensus 70 ~~~~vLeiG~G~G~----~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~----~~~------------------ 119 (238)
++.+|+++|||+|. .++.+++..+. ..+|+|+|+|+.+++.|++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999997 45556665442 4789999999999999987531 001
Q ss_pred ----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEec
Q 026461 120 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 120 ----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+..+|+|.++|..+..+ ..++||+|++.... ......++.+.+.|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 12468898888876422 14799999986432 234568899999999999999854
No 134
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.29 E-value=8.5e-11 Score=99.74 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=79.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
++.+|||+|||+|..|..+++.++...+|+++|+|+++++.+++.+......-++.++++|..+.++..... ......
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence 557899999999999999999886457899999999999999998876432235778899987654332100 011333
Q ss_pred EEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461 150 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 150 ~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+++++.. ......+++.+.+.|+|||.+++.
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4555432 223456899999999999999874
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.29 E-value=3.5e-11 Score=97.27 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=75.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------------CCcEEEEecchhHH
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSV 134 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~ 134 (238)
.+..+||++|||.|..+++||+. +.+|++||+++.+++.+.+ +.++ ..+|++.++|+.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence 34579999999999999999984 6799999999999997642 2222 25689999999876
Q ss_pred HHHHHhcccCCCCeeEEEEc-----CCccchHHHHHHHHhccCCCeEEEE
Q 026461 135 LDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+.. .+.||+|+-. .+++....++..+.++|+|||++++
T Consensus 110 ~~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 110 TAAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred Cccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 4321 3689999833 2344557889999999999986444
No 136
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.28 E-value=1.4e-10 Score=101.21 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=82.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.++.+|||+|||+|..++.++.. ..+|+++|+++.+++.|++|++.+++. +++|+.+|+.+.+... ..+|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~ 301 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MSAP 301 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CCCC
Confidence 35679999999999999999963 468999999999999999999999885 6999999998876542 3569
Q ss_pred eEEEEcCCccch-HHHHHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+|++|.+.... ...++.+. .++|++++.++
T Consensus 302 D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 302 ELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 999999875543 45555554 57898888775
No 137
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.27 E-value=5.7e-11 Score=98.55 Aligned_cols=116 Identities=20% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461 62 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 141 (238)
Q Consensus 62 l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 141 (238)
+...+....+++|||||||.||.+..++..- ...|+|+|.++....+.+..-.-.|....+.++..-+ +.++.
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~---- 179 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN---- 179 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc----
Confidence 3334445678999999999999999999863 3679999999987766554433444433344443223 33332
Q ss_pred ccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461 142 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
.+.||+||+-+. ..+....+..+...|++||.+|++.....|.
T Consensus 180 ---~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 180 ---LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred ---cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 379999998763 4556778889999999999999988876654
No 138
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.27 E-value=9.5e-11 Score=94.33 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchhHHHHHHHHHHcCCCCc--EEEEecc
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-----GQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESE 130 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d 130 (238)
...+.-..+...+..++||++||+|-.+..+.++.... ++|+.+|++|++++.+++...+.++... +.++.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 33333334444456799999999999999999988742 8999999999999999999888787654 8999999
Q ss_pred hhHHHHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEE
Q 026461 131 ALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 131 ~~~~l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
++++ | +...+||...+.- ...+.+..++++++.|||||.+.+
T Consensus 168 AE~L-p------Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 168 AEDL-P------FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred cccC-C------CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 9776 2 2368999988764 345668889999999999998765
No 139
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.27 E-value=2.1e-10 Score=89.26 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=99.5
Q ss_pred CccCcHhHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec
Q 026461 51 MMGTAPDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 51 ~~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
.|+.++..+.+...+.. .....++||+-+|+|..++..++.- ..+++.||.+...+...++|++..+...+++++..
T Consensus 23 RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 23 RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 45566677777777777 4788999999999999999888753 47999999999999999999999998888999999
Q ss_pred chhHHHHHHHhcccCCCCeeEEEEcCCcc--chHHHHHHHH----hccCCCeEEEEecc
Q 026461 130 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM----KLLKVGGIAVYDNT 182 (238)
Q Consensus 130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~----~~L~~gG~lv~~~~ 182 (238)
|+...++.+.. .++||+||+|.+-. ........+. .+|+|+|.++++.-
T Consensus 101 da~~~L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 101 DALRALKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred cHHHHHHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 99988777632 24599999998644 2222222222 67999999999743
No 140
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=3.2e-11 Score=94.12 Aligned_cols=106 Identities=19% Similarity=0.308 Sum_probs=80.9
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE-EEecchhHHHHHHHhccc
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSE 143 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~l~~~~~~~~ 143 (238)
++.......|||+|||+|.+-.+.-- .+..+||++|+++.+-+.+.+.++..-. .++. |++++.++. ++++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~---- 142 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA---- 142 (252)
T ss_pred HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc----
Confidence 33333444689999999998433321 1478999999999999999998888754 3455 888887654 4442
Q ss_pred CCCCeeEEEEc---CCccchHHHHHHHHhccCCCeEEEE
Q 026461 144 NEGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 144 ~~~~fD~V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+++||.|+.- +..++..+.+.++.++|+|||.+++
T Consensus 143 -d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 143 -DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 6899999753 5677888999999999999999887
No 141
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.27 E-value=1.3e-10 Score=94.54 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=78.4
Q ss_pred HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461 60 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 137 (238)
Q Consensus 60 ~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~ 137 (238)
.++..+.. ..++.+|||+|||+|..+..++.. ..+|+++|+++.+++.|++++...+..+++++..+|.. .
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~ 123 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----S 123 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----h
Confidence 34444433 345679999999999999999875 35799999999999999999988877678999998832 1
Q ss_pred HHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEE
Q 026461 138 LLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
. .++||+|++.... ......++.+.+.+++++++.+
T Consensus 124 ~------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 124 L------LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred c------cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 1 4789999976432 2334566666666655555444
No 142
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.26 E-value=3.8e-10 Score=94.81 Aligned_cols=151 Identities=23% Similarity=0.300 Sum_probs=114.6
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
..++.....+...++...+...|||++++.|+-|.++++.+...+.|++.|+++..+...++++.+.|..+ +.....|+
T Consensus 67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~ 145 (283)
T PF01189_consen 67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADA 145 (283)
T ss_dssp EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHH
T ss_pred EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecc
Confidence 44566667777777777788899999999999999999999878999999999999999999999999854 88887888
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccch-------------------------HHHHHHHHhcc----CCCeEEEEecc
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLL----KVGGIAVYDNT 182 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L----~~gG~lv~~~~ 182 (238)
....+... ...||.|++|++++.. ...++.+.+++ +|||.+|...+
T Consensus 146 ~~~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 146 RKLDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHHHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred cccccccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 88765542 3469999999754321 35677778999 99999997765
Q ss_pred ccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEee
Q 026461 183 LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 225 (238)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 225 (238)
.. .++++ ...++.| +.++|+++.+-+
T Consensus 221 S~-----~~eEN---------E~vV~~f---l~~~~~~~l~~~ 246 (283)
T PF01189_consen 221 SL-----SPEEN---------EEVVEKF---LKRHPDFELVPI 246 (283)
T ss_dssp HH-----HGGGT---------HHHHHHH---HHHSTSEEEECC
T ss_pred cH-----HHHHH---------HHHHHHH---HHhCCCcEEEec
Confidence 53 23332 2335555 556777766543
No 143
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.25 E-value=1.8e-10 Score=93.39 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=83.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++...+.. ++++..+|+.+..... .++||
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D 114 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFD 114 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCcc
Confidence 4779999999999999988875 347999999999999999998876653 5888888887664321 37899
Q ss_pred EEEEcC---CccchHHHHHHHHhccCCCeEEEEecc
Q 026461 150 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 150 ~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+|++.. .......+++.+.+.|++||.+++...
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999864 344567788999999999999888653
No 144
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.25 E-value=1.3e-10 Score=81.31 Aligned_cols=99 Identities=20% Similarity=0.333 Sum_probs=78.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~ 152 (238)
+++|+|||.|..+..++. . ...+++++|+++..+..+++..... ...+++++.+|..+..... .++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA------DESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc------CCceEEEE
Confidence 489999999999999988 3 3689999999999999888644333 3356899999988765411 47899999
Q ss_pred EcCCcc----chHHHHHHHHhccCCCeEEEEe
Q 026461 153 VDADKD----NYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 153 ~d~~~~----~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
++.... ....+++.+.+.+++||.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 986533 4577888888999999999875
No 145
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.24 E-value=2.6e-11 Score=92.86 Aligned_cols=122 Identities=22% Similarity=0.324 Sum_probs=91.8
Q ss_pred cHhHHHHHHHHHhh-------cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461 55 APDAGQLMAMLLRL-------VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 127 (238)
Q Consensus 55 ~~~~~~~l~~l~~~-------~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (238)
+.....++..|... .++.+|||+|||.|.....|++.-- .+.++|+|.++.+++.|+...++.++++.|+|.
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEE
Confidence 34445555555432 2345999999999999999997532 466999999999999999999999999889999
Q ss_pred ecchhHHHHHHHhcccCCCCeeEEEE----cC-------CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 128 ESEALSVLDQLLKYSENEGSFDYAFV----DA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 128 ~~d~~~~l~~~~~~~~~~~~fD~V~~----d~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
+.|+.+. . +..++||+|.= |+ ......-|+..+.++|+|||++++-.+-|
T Consensus 124 q~DI~~~--~-----~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 124 QLDITDP--D-----FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EeeccCC--c-----ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 9998764 1 12578888862 21 12223567888889999999999977765
No 146
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1.4e-10 Score=90.20 Aligned_cols=104 Identities=12% Similarity=-0.011 Sum_probs=80.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..+..+|||||||+|..+..+++. ..+|+++|+++.+++.+++++.. .++++++++|+.+.... ..+
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~~ 77 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KLQ 77 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------ccC
Confidence 445678999999999999999986 46999999999999999998854 24799999999876321 346
Q ss_pred eeEEEEcCCccchHHHHHHHHh--ccCCCeEEEEecccc
Q 026461 148 FDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLW 184 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~ 184 (238)
||.|+.+.+.......+..+.. .+.++|++++..-..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a 116 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVA 116 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHh
Confidence 9999998765554566666654 345888998876443
No 147
>PRK06202 hypothetical protein; Provisional
Probab=99.23 E-value=5.4e-11 Score=97.27 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (238)
...++...+...++.+|||+|||+|..+..+++..+ +..+|+++|+++++++.|++..... ++++...++...
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l 123 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL 123 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc
Confidence 344444444445677999999999999999886542 2459999999999999998875432 355555554332
Q ss_pred HHHHHhcccCCCCeeEEEEcCCccc-----hHHHHHHHHhccCCCeEEEEeccccC
Q 026461 135 LDQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLWG 185 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (238)
+. ..++||+|++....++ ...+++++.+.++ |.+++.+...+
T Consensus 124 -~~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 124 -VA------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -cc------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 11 1479999998754332 3457888888887 66666665543
No 148
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.23 E-value=1.8e-10 Score=91.21 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=75.3
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHH
Q 026461 61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQL 138 (238)
Q Consensus 61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~ 138 (238)
+...+....++.+|||+|||+|..+..++....+.++|+++|+++.. .. .+++++++|+.+. ++.+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence 33334445677899999999999999999887556799999999864 11 3478888887542 1111
Q ss_pred HhcccCCCCeeEEEEcCCcc-------c-------hHHHHHHHHhccCCCeEEEEe
Q 026461 139 LKYSENEGSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
... ...++||+|+++..+. . ....+..+.+.|+|||.+++.
T Consensus 91 ~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 RER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 110 1246899999975311 1 246788889999999999985
No 149
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1.8e-10 Score=93.64 Aligned_cols=122 Identities=16% Similarity=0.283 Sum_probs=92.3
Q ss_pred CcHhHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461 54 TAPDAGQLMAMLLRL------VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 127 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~------~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (238)
..+++++++...+.. ..+..+||+|||+|..++.++..++ .++|+++|.++.++..|.+|+.++++.+++.++
T Consensus 126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 445666666655442 2345799999999999999999999 999999999999999999999999999999888
Q ss_pred ec----chhHHHHHHHhcccCCCCeeEEEEcCCc--------------------------cc---hHHHHHHHHhccCCC
Q 026461 128 ES----EALSVLDQLLKYSENEGSFDYAFVDADK--------------------------DN---YCNYHERLMKLLKVG 174 (238)
Q Consensus 128 ~~----d~~~~l~~~~~~~~~~~~fD~V~~d~~~--------------------------~~---~~~~~~~~~~~L~~g 174 (238)
+- |..+..+. ..+++|+++.+.+- .. +..++..+.++|+||
T Consensus 205 ~~~me~d~~~~~~l------~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 205 HNIMESDASDEHPL------LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred eccccccccccccc------ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 54 33333222 25899999876320 11 134555666999999
Q ss_pred eEEEEecc
Q 026461 175 GIAVYDNT 182 (238)
Q Consensus 175 G~lv~~~~ 182 (238)
|.+.++-.
T Consensus 279 g~~~le~~ 286 (328)
T KOG2904|consen 279 GFEQLELV 286 (328)
T ss_pred CeEEEEec
Confidence 99998754
No 150
>PHA03411 putative methyltransferase; Provisional
Probab=99.20 E-value=6.1e-10 Score=91.92 Aligned_cols=115 Identities=12% Similarity=0.108 Sum_probs=80.5
Q ss_pred CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe
Q 026461 49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 128 (238)
Q Consensus 49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (238)
.+...........+ ........+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++ .++++++
T Consensus 45 ~G~FfTP~~i~~~f--~~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~ 115 (279)
T PHA03411 45 SGAFFTPEGLAWDF--TIDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWIT 115 (279)
T ss_pred ceeEcCCHHHHHHH--HhccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEE
Confidence 44444444443222 12333457999999999999999888654 579999999999999998863 3588999
Q ss_pred cchhHHHHHHHhcccCCCCeeEEEEcCCccc-----------------------hHHHHHHHHhccCCCeEEEEe
Q 026461 129 SEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~-----------------------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+|+.+... ..+||+|+++.+... ...++..+..+|+|+|.+.+-
T Consensus 116 ~D~~e~~~--------~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 116 SDVFEFES--------NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred Cchhhhcc--------cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99887632 368999999753211 134455556788998866553
No 151
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.20 E-value=3.2e-11 Score=95.70 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=92.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
...+.||+|+|.|..|..++..+ ..+|..+|..+..++.|++++...+ ....++++.-..++.|. .+.||
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD 124 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD 124 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence 45689999999999999887543 4699999999999999998875421 23357788777777654 47999
Q ss_pred EEEEcC-----CccchHHHHHHHHhccCCCeEEEE-eccccCcc-ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE
Q 026461 150 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY-DNTLWGGT-VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL 222 (238)
Q Consensus 150 ~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 222 (238)
+||+-- ...+...+++.+...|+|+|+||+ +|+...|. +.++++. .-.| ..+....|.+..++.+
T Consensus 125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds--SvTR------s~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS--SVTR------SDEHFRELFKQAGLRL 196 (218)
T ss_dssp EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT--EEEE------EHHHHHHHHHHCT-EE
T ss_pred EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC--eeec------CHHHHHHHHHHcCCEE
Confidence 999853 234567899999999999999988 55666664 5665544 1233 3444455566677776
Q ss_pred Eeeec
Q 026461 223 SHVAL 227 (238)
Q Consensus 223 ~~lp~ 227 (238)
+.--.
T Consensus 197 v~~~~ 201 (218)
T PF05891_consen 197 VKEEK 201 (218)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 65433
No 152
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.19 E-value=1.9e-10 Score=90.92 Aligned_cols=162 Identities=17% Similarity=0.247 Sum_probs=91.7
Q ss_pred cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
.|...-.++.++-..+|+.|+|+|+..|++++++|+. +...++|++||++..... ++.++..++.++|++++||.
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence 4555666777777889999999999999999998764 334789999999755332 22333456668999999998
Q ss_pred hHH--HHHHHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCeEEEEeccccCccccC--CCCCCCCCcccchHH
Q 026461 132 LSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQ 205 (238)
Q Consensus 132 ~~~--l~~~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~--~~~~~~~~~~~~~~~ 205 (238)
.+. +.....- -......+|+.|+. ..+...-++.+.+++++|+++|+.|..+...... +..++... ..
T Consensus 95 ~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g-----~~ 168 (206)
T PF04989_consen 95 IDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPG-----NN 168 (206)
T ss_dssp SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-----------------
T ss_pred CCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhh-----hH
Confidence 653 2221100 11346668888864 4567777888899999999999988875443322 11222111 11
Q ss_pred HHHHHHHHhhcCCCeeEEe
Q 026461 206 AILDLNRSLADDPRVQLSH 224 (238)
Q Consensus 206 ~~~~~~~~l~~~~~~~~~~ 224 (238)
-..+..++|.++++|+...
T Consensus 169 p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 169 PKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp -HHHHHHHHHTTTTEEEET
T ss_pred HHHHHHHHHHHCCCcEecc
Confidence 1667777899999976653
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.17 E-value=9.5e-10 Score=95.95 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=84.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++. ++++.++|+.+.+.. .+.||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence 35899999999999999988665 468999999999999999999998875 478999999877653 257999
Q ss_pred EEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 151 AFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 151 V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|++|.. .....+++.+...+++||+|.+.
T Consensus 129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 999974 44467888878889999999995
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.17 E-value=7.3e-10 Score=86.52 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=72.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--CCCcEEEEecchhHHH-HHHHhcccC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l-~~~~~~~~~ 144 (238)
..++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++ ...++.+...+-.+.. +... .
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~ 116 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----E 116 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S
T ss_pred hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----c
Confidence 56788999999999999999998754 67999999988 9999999999876 4567888777654422 2221 1
Q ss_pred CCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEEec
Q 026461 145 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 145 ~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
..+||+|+... ....++.+++.+..+|+++|.+++..
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 46899998643 35667888899999999988766653
No 155
>PRK05785 hypothetical protein; Provisional
Probab=99.16 E-value=4.6e-10 Score=91.41 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=73.5
Q ss_pred HHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461 60 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 138 (238)
Q Consensus 60 ~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~ 138 (238)
.++..+... .++.+|||+|||+|..+..+++.. +.+|+|+|+++++++.|++. ..++++|+.+. +
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-- 105 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-- 105 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C--
Confidence 344444332 347799999999999999999865 46999999999999998763 13467777654 2
Q ss_pred HhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccCCCe
Q 026461 139 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGG 175 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~~gG 175 (238)
+.+++||+|++... ..+....++++.+.|||..
T Consensus 106 ----~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 ----FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ----CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 23689999998643 3456788999999999953
No 156
>PLN02672 methionine S-methyltransferase
Probab=99.16 E-value=6.7e-10 Score=106.79 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=90.9
Q ss_pred cCcHhHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--------
Q 026461 53 GTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-------- 120 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-------- 120 (238)
...++...++..+.... ++++|||+|||+|..++.++...+ ..+|+++|+++++++.|++|+..+++
T Consensus 97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 34456666666643221 246899999999999999999876 67999999999999999999987643
Q ss_pred -------CCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc------cc----------------------------
Q 026461 121 -------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------DN---------------------------- 159 (238)
Q Consensus 121 -------~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~------~~---------------------------- 159 (238)
.++++++++|..+.++.. ..+||+|+.+.+- ..
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~ 249 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVE 249 (1082)
T ss_pred ccccccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCC
Confidence 257999999987765321 2479999986320 00
Q ss_pred -------hHHHHHHHHhccCCCeEEEEeccc
Q 026461 160 -------YCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 160 -------~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+...+..+.+.|+|||.++++--.
T Consensus 250 g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 250 DQFGLGLIARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 134455556799999999987443
No 157
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.15 E-value=1.1e-10 Score=89.29 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=60.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
..|+|+.||.|+.++.+|..+. +|++||+++..++.++.|++-.|..++|+++++|..+.++.+.. ...+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence 3699999999999999999754 89999999999999999999999999999999999998765421 1228999
Q ss_pred EEcCCc
Q 026461 152 FVDADK 157 (238)
Q Consensus 152 ~~d~~~ 157 (238)
|++.++
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998643
No 158
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.15 E-value=1.4e-09 Score=94.58 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=78.8
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc--------
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE-------- 143 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~-------- 143 (238)
.++||++||+|..++.++... .+|+++|+++.+++.+++|+..+++. +++++.+|+.+.++.+.....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhccccccccccc
Confidence 579999999999999999864 48999999999999999999998885 699999999988776532100
Q ss_pred -CCCCeeEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461 144 -NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 144 -~~~~fD~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (238)
...+||+||+|.+... ....++.+.+ +++++.++
T Consensus 284 ~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred ccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 0125999999987544 3445555543 67777664
No 159
>PRK00536 speE spermidine synthase; Provisional
Probab=99.14 E-value=9.8e-10 Score=90.69 Aligned_cols=100 Identities=9% Similarity=0.065 Sum_probs=79.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC--C-CCcEEEEecchhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
...+|++||-||.|.|..+..++++ + .+|+.||++++.++.+++++.... + ++|++++.. ..+.
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~----- 135 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL----- 135 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc-----
Confidence 3568899999999999999999997 3 399999999999999999776432 2 267887751 2221
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
..++||+|++|.. ..+++++.+.+.|+|||+++...
T Consensus 136 ~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 136 DIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence 1378999999964 33788899999999999999864
No 160
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.14 E-value=6.4e-10 Score=88.37 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=78.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..+...|+|..||.|+.++.+|...+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.++++ .+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~ 169 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK 169 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence 45678999999999999999998544 678999999999999999999999999999999999998876 379
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
+|-|+++.+. ....++..+..++++||++.
T Consensus 170 ~drvim~lp~-~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNLPE-SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE--TS-SGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECChH-HHHHHHHHHHHHhcCCcEEE
Confidence 9999998754 34578888999999999875
No 161
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.4e-09 Score=82.91 Aligned_cols=89 Identities=17% Similarity=0.289 Sum_probs=70.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
....+.|+|+|||+|..++..+..- ..+|+|+|+++++++.+++|..+ +..+++|+.+|+.+. .+.
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~----------~~~ 108 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF----------RGK 108 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc----------CCc
Confidence 3466789999999999998877643 47999999999999999999988 346799999999877 689
Q ss_pred eeEEEEcCCc-----cchHHHHHHHHhc
Q 026461 148 FDYAFVDADK-----DNYCNYHERLMKL 170 (238)
Q Consensus 148 fD~V~~d~~~-----~~~~~~~~~~~~~ 170 (238)
+|.++++.+. +.-..++...++.
T Consensus 109 ~dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 109 FDTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred cceEEECCCCccccccCCHHHHHHHHHh
Confidence 9999998642 2234566655554
No 162
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=3.6e-10 Score=90.31 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=81.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC----------------------------
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------------------------- 119 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------------------------- 119 (238)
...++.+|||||.+|..|+.+|+.+. ...|.|+||++..+..|+++++..-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 34678999999999999999999997 6679999999999999999886421
Q ss_pred ------CCCcEEEEec----chhHHHHHHHhcccCCCCeeEEEEc---------CCccchHHHHHHHHhccCCCeEEEEe
Q 026461 120 ------VDHKINFIES----EALSVLDQLLKYSENEGSFDYAFVD---------ADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 120 ------~~~~v~~~~~----d~~~~l~~~~~~~~~~~~fD~V~~d---------~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.+++.|... +..+++.. ....||+|++- ...+....+|..+.++|.|||++|++
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1112222221 12234422 25799999753 23456789999999999999999997
Q ss_pred ccccC
Q 026461 181 NTLWG 185 (238)
Q Consensus 181 ~~~~~ 185 (238)
---|.
T Consensus 209 PQpWk 213 (288)
T KOG2899|consen 209 PQPWK 213 (288)
T ss_pred CCchH
Confidence 55543
No 163
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.12 E-value=1.3e-09 Score=92.61 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC----CCcEEEEecchhHHHHHHHhcccCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++++...+. ..+++|..+|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 4679999999999999999974 56999999999999999999876522 13578888886432 4
Q ss_pred CCeeEEEEcCCccch-----HHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNY-----CNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~-----~~~~~~~~~~L~~gG~lv~ 179 (238)
++||+|++.....++ ...+..+. .+.+||+++.
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence 789999865432222 23445554 3456666654
No 164
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.5e-10 Score=88.56 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=85.7
Q ss_pred HHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchhHHHHHHHHHHcCC---------CCcEEEE
Q 026461 59 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKAGV---------DHKINFI 127 (238)
Q Consensus 59 ~~~l~~l~~-~~~~~~vLeiG~G~G~~t~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~v~~~ 127 (238)
+.++..|-. +.+..+.||+|+|+||.+..++.-+... ...+|||.-++.++.+++++.+.-- ..++.++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 455555543 4566799999999999999999655433 4459999999999999999987541 1467889
Q ss_pred ecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 128 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 128 ~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+|.....++ ..+||.|++.+..+. ..+.+...|++||.+++-
T Consensus 150 vGDgr~g~~e-------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRKGYAE-------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eCCccccCCc-------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence 9999887655 489999999875443 345677888999988874
No 165
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.09 E-value=3.4e-09 Score=91.84 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=78.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc-------c-
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-------S- 142 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-------~- 142 (238)
+.+|||+|||+|..++.++... .+|+++|+++++++.+++|+..+++. +++++.+|+.++++..... +
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 273 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGI 273 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhcccccccccc
Confidence 3579999999999999999875 48999999999999999999999885 5999999998877642110 0
Q ss_pred -cCCCCeeEEEEcCCccc-hHHHHHHHHhccCCCeEEEEe
Q 026461 143 -ENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 143 -~~~~~fD~V~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.....||+||+|.+... ....++.+.+ +++++.++
T Consensus 274 ~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 274 DLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 00124899999987555 3455565543 67877774
No 166
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.09 E-value=2.3e-09 Score=93.09 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=87.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
.+|||+.||+|..++.++...+...+|+++|+++++++.+++|++.++.. +++++++|+...+... ...||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence 48999999999999999986543468999999999999999999988875 5899999999988764 4689999
Q ss_pred EEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 152 FVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
++|. .....++++.+.+.+++||+|.+.
T Consensus 119 dlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 9998 444468999999999999999885
No 167
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.09 E-value=6.7e-10 Score=89.73 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=88.8
Q ss_pred CCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH-cC------
Q 026461 47 HPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG------ 119 (238)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~------ 119 (238)
.+|......+...+++.. ....++.+||..|||.|+-..+||+. +.+|+|+|+++.+++.+.+.... ..
T Consensus 15 ~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~ 90 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGG 90 (218)
T ss_dssp -TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTT
T ss_pred CCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccc
Confidence 345555567777777776 34556679999999999999999985 56999999999999988432211 00
Q ss_pred ----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc-----CCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 120 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 120 ----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
-..+|++.++|..++-+.. .++||+|+=. .++.....+.+.+.++|+|||.+++-.+.+
T Consensus 91 ~~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 91 FKRYQAGRITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEY 158 (218)
T ss_dssp EEEETTSSEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES
T ss_pred eeeecCCceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEc
Confidence 1246899999998864322 3689999843 245566789999999999999954433433
No 168
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.06 E-value=1.7e-09 Score=85.51 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=91.1
Q ss_pred cHhHHHHHHHHHhhc-CCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 55 APDAGQLMAMLLRLV-NAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 55 ~~~~~~~l~~l~~~~-~~~-~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
++....++..|.+.. ... +|||||||+|-.+.+++..+| ..+....|+++......+.++...++.+-..-+..|+.
T Consensus 8 eRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred hhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecC
Confidence 344455555555432 334 499999999999999999998 78899999999998889999988887542233444444
Q ss_pred HH-HHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccccC
Q 026461 133 SV-LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 185 (238)
Q Consensus 133 ~~-l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (238)
+. .+.........++||.||+-. .......+|+.+.++|++||.+++-..+..
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 32 111100001246999999753 344557788999999999999999776543
No 169
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=9.9e-10 Score=85.66 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=77.0
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHh
Q 026461 61 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 140 (238)
Q Consensus 61 ~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~ 140 (238)
++..++ .+..+|||+|||.|....+|.+. .+.+..|+|++++.+..+.++ .+.++++|+.+.+..+
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f-- 71 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADF-- 71 (193)
T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhC--
Confidence 344444 35689999999999999888885 268899999999988777653 3789999999988876
Q ss_pred cccCCCCeeEEEEcCCccch---HHHHHHHHhccCCCeEEEEecc
Q 026461 141 YSENEGSFDYAFVDADKDNY---CNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 141 ~~~~~~~fD~V~~d~~~~~~---~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
++++||.|++....+.. ...++++.+.-+ .+++.+.|.
T Consensus 72 ---~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 72 ---PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred ---CCCCccEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 47899999998755444 344455544322 367777664
No 170
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.05 E-value=4.4e-10 Score=89.16 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=98.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
-+++||+|||+|..+..+-... .+++|+|+|..|++.|.+. |+- -.+.++++..+++.. ..+.||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~-----~~er~DL 191 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDL-----TQERFDL 191 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhc-----cCCcccc
Confidence 4699999999999998887653 4899999999999998764 321 245667776666543 3689999
Q ss_pred EEEcC---CccchHHHHHHHHhccCCCeEEEEeccc---cCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEe
Q 026461 151 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL---WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH 224 (238)
Q Consensus 151 V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 224 (238)
|..-. .......++-.+..+|+|||.+.|+-=. +.+.+..|. -|+ .+-+.|.+.+....+++++-
T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps------~Ry---AH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPS------QRY---AHSESYVRALLAASGLEVIA 262 (287)
T ss_pred hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchh------hhh---ccchHHHHHHHHhcCceEEE
Confidence 98643 2345567777888999999999985322 222112221 111 22455666666667777653
Q ss_pred e-----------ecCCeeEEEEEcC
Q 026461 225 V-----------ALGDGITICRRIF 238 (238)
Q Consensus 225 l-----------p~~~G~~i~~~~~ 238 (238)
+ |+..++.|+||+.
T Consensus 263 ~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 263 IEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred eecccchhhcCCCCCCceEEEecCC
Confidence 3 7778888888864
No 171
>PHA03412 putative methyltransferase; Provisional
Probab=99.05 E-value=3.3e-09 Score=85.76 Aligned_cols=117 Identities=14% Similarity=0.219 Sum_probs=81.4
Q ss_pred CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461 50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 127 (238)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (238)
+........+..+.. ....+.+|||+|||+|..++.++..++ +..+|+++|+++.+++.|++++ .++.++
T Consensus 31 GqFfTP~~iAr~~~i--~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~ 102 (241)
T PHA03412 31 GAFFTPIGLARDFTI--DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWI 102 (241)
T ss_pred CccCCCHHHHHHHHH--hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEE
Confidence 333444555554432 223467999999999999999988653 2569999999999999999875 247889
Q ss_pred ecchhHHHHHHHhcccCCCCeeEEEEcCCcc-----c----------hHHHHHHHHhccCCCeEEEEecc
Q 026461 128 ESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N----------YCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 128 ~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~-----~----------~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.+|+.... + .++||+|+.+.+-. + ...++..+.+++++|+.|+-.+.
T Consensus 103 ~~D~~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 103 NADALTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred Ecchhccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 99886531 2 36899999875311 1 23467777787888776444433
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.03 E-value=8.2e-09 Score=87.06 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=74.3
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
+++.....+...+...+..+|||||||+|..|..++.. ..+|+++|+++.+++.+++++...+..++++++++|+.+
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 45555555555555667789999999999999999985 458999999999999999999877756789999999977
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCcc
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKD 158 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~ 158 (238)
. . ...||.|+.+.+..
T Consensus 97 ~--~-------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 97 T--E-------FPYFDVCVANVPYQ 112 (294)
T ss_pred h--c-------ccccCEEEecCCcc
Confidence 5 1 25789999876543
No 173
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3.2e-09 Score=86.26 Aligned_cols=112 Identities=17% Similarity=0.241 Sum_probs=87.3
Q ss_pred HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461 56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135 (238)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 135 (238)
+..+ ++-.++...++.+|+|-|+|+|..+.++++...+.++++.+|+.....+.|.+.++..++.+++++.+-|+...
T Consensus 92 ~Dia-~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~- 169 (314)
T KOG2915|consen 92 PDIA-MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS- 169 (314)
T ss_pred ccHH-HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC-
Confidence 4444 44455678889999999999999999999999889999999999999999999999999999999999887653
Q ss_pred HHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCe
Q 026461 136 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 175 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG 175 (238)
.+.. ....+|.||+|.+.++ ..+..+++.|+.+|
T Consensus 170 -GF~~---ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g 203 (314)
T KOG2915|consen 170 -GFLI---KSLKADAVFLDLPAPW--EAIPHAAKILKDEG 203 (314)
T ss_pred -Cccc---cccccceEEEcCCChh--hhhhhhHHHhhhcC
Confidence 1111 1479999999964322 22233445666655
No 174
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9.9e-09 Score=90.67 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=94.6
Q ss_pred CCccCcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE
Q 026461 50 AMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 125 (238)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~ 125 (238)
.+....+...+.|...+. ..+..++||+-||.|..++.+|.. ..+|+|+|+++++++.|++|++.++..+ ++
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~ 344 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VE 344 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EE
Confidence 344455666555555433 335568999999999999999965 4699999999999999999999999977 99
Q ss_pred EEecchhHHHHHHHhcccCCCCeeEEEEcCCccchH-HHHHHHHhccCCCeEEEEe
Q 026461 126 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 126 ~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~ 180 (238)
|..+++.++.+... ....+|.|++|.+..... .+++.+ ..++|..++.++
T Consensus 345 f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 345 FIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred EEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 99999999877652 135889999998877766 555555 566777776664
No 175
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.01 E-value=6.5e-09 Score=84.08 Aligned_cols=131 Identities=8% Similarity=0.005 Sum_probs=88.4
Q ss_pred cCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH------H--
Q 026461 46 DHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK------K-- 117 (238)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~------~-- 117 (238)
..+|......+...+.+..+. ..++.+||..|||.|.-..+||+. +.+|+|+|+|+.+++.+.+... .
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~ 95 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGN 95 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceeccc
Confidence 334544444454444444332 224579999999999999999985 5689999999999998755210 0
Q ss_pred ---cCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 118 ---AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 118 ---~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
.-....++++++|..++-+.. ...++||+|+-.+ ++.....+.+.+.++|+|||.+++-...+
T Consensus 96 ~~~~~~~~~i~~~~gD~f~l~~~~----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 96 DYKLYKGDDIEIYVADIFNLPKIA----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccceeccCceEEEEccCcCCCccc----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 001246899999998862210 0136899987542 34455788999999999999877754433
No 176
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.00 E-value=4.3e-09 Score=82.66 Aligned_cols=96 Identities=23% Similarity=0.290 Sum_probs=81.7
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~ 152 (238)
+++|||+|.|.-++.++-..| +.+++.+|.....+...+......++. +++++++.+.+ +. ...+||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence 799999999999999999987 899999999999999999999999996 59999999887 11 268999999
Q ss_pred EcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 153 VDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 153 ~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.-+.. ....+++.+.+++++||.+++
T Consensus 121 aRAv~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 121 ARAVA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred eehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence 98743 567888999999999998886
No 177
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.7e-08 Score=77.45 Aligned_cols=103 Identities=21% Similarity=0.214 Sum_probs=81.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
.++.++|||||+|+.+.++++...+...+.++|++|++++...+..+.++. +++.+..|....+. .++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence 488999999999999999999988789999999999999999888877664 47888888777655 48999
Q ss_pred EEEEcCCc------c------------------chHHHHHHHHhccCCCeEEEEecc
Q 026461 150 YAFVDADK------D------------------NYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 150 ~V~~d~~~------~------------------~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+++++.+- + -...++..+-.+|+|.|++.+--+
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 99887420 0 023455556678899998887543
No 178
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.96 E-value=1.3e-08 Score=77.01 Aligned_cols=119 Identities=18% Similarity=0.103 Sum_probs=93.4
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+++..++.+...+....+.-|||+|.|+|..|..++++.-+...++++|.+++.+....+.+ +.++++.||+.
T Consensus 31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~ 104 (194)
T COG3963 31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAF 104 (194)
T ss_pred CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchh
Confidence 356667777777777778889999999999999999887655788999999999998887764 34779999998
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEE
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+.-..+.+. ....||.|++.-+. +....+++.+...|..||.++-
T Consensus 105 ~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 105 DLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 764334322 46789999987543 3345788889999999998775
No 179
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.96 E-value=2.7e-09 Score=84.19 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=79.1
Q ss_pred cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461 55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134 (238)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (238)
++....+........++..|+|.-||.|+.++.++...+ .|++||++|..+.-|+.|++-.|++++|+|++||..++
T Consensus 79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 333333333344444788999999999999999998755 89999999999999999999999999999999999998
Q ss_pred HHHHHhcccCCCCeeEEEEcCCcc
Q 026461 135 LDQLLKYSENEGSFDYAFVDADKD 158 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~~~~ 158 (238)
...+... ...+|+||...++.
T Consensus 156 ~~~lq~~---K~~~~~vf~sppwg 176 (263)
T KOG2730|consen 156 ASKLKAD---KIKYDCVFLSPPWG 176 (263)
T ss_pred HHHHhhh---hheeeeeecCCCCC
Confidence 8877543 34588999886543
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.95 E-value=5.5e-09 Score=88.79 Aligned_cols=83 Identities=13% Similarity=0.252 Sum_probs=65.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEe-cchhHHHHHHHhcccCCCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~l~~~~~~~~~~~~ 147 (238)
...++||||||+|.....++...+ ..+++++|+++.+++.|+++++.+ ++.+++++.. .+..+.+..... ..+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence 346899999999998888887665 689999999999999999999999 7888898864 444444433211 1468
Q ss_pred eeEEEEcCC
Q 026461 148 FDYAFVDAD 156 (238)
Q Consensus 148 fD~V~~d~~ 156 (238)
||+|+++.+
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999999864
No 181
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.94 E-value=4.2e-09 Score=86.53 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=81.2
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461 63 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 142 (238)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 142 (238)
.......+.++|||||.|.|..+..+++..| +.+++.+|. |+.++.+++ .++++++.+|..+.+
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~------- 156 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL------- 156 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC-------
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh-------
Confidence 3334455667999999999999999999998 899999999 888888887 578999999987432
Q ss_pred cCCCCeeEEEEcCCccc-----hHHHHHHHHhccCCC--eEEEEecccc
Q 026461 143 ENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVG--GIAVYDNTLW 184 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~-----~~~~~~~~~~~L~~g--G~lv~~~~~~ 184 (238)
+. +|++++....++ ...+++++.+.|+|| |.|++.+.+.
T Consensus 157 --P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 157 --PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp --SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred --cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 23 999998754433 456889999999999 9988888775
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.94 E-value=7.2e-09 Score=87.04 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461 59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 138 (238)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~ 138 (238)
.+++..+. ..++..+||++||.|+.|..+++.+++.++|+|+|.++++++.+++.+.. .+++++++++..++...+
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 44555443 34567999999999999999999987689999999999999999988755 368999999998876655
Q ss_pred HhcccCCCCeeEEEEcCCc
Q 026461 139 LKYSENEGSFDYAFVDADK 157 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~~ 157 (238)
.. ...++|.|++|.+.
T Consensus 85 ~~---~~~~vDgIl~DLGv 100 (296)
T PRK00050 85 AE---GLGKVDGILLDLGV 100 (296)
T ss_pred Hc---CCCccCEEEECCCc
Confidence 21 12389999998543
No 183
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.94 E-value=3.3e-09 Score=89.36 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=83.5
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
+.+.+.|||+|||+|..+++.|++- ..+|+++|.+.-+ +.|++.+..+++.+.|+++++.+.++ .++ .++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence 6688999999999999999999875 5799999997655 99999999999999999999999886 441 389
Q ss_pred eeEEEEcC--CccchHHHHHHHH----hccCCCeEEEEecc
Q 026461 148 FDYAFVDA--DKDNYCNYHERLM----KLLKVGGIAVYDNT 182 (238)
Q Consensus 148 fD~V~~d~--~~~~~~~~~~~~~----~~L~~gG~lv~~~~ 182 (238)
.|+|+..- ..-.+...++.++ +.|+|||++.-+-+
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 99998762 1223344555554 68999999876443
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.93 E-value=1.3e-08 Score=90.39 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=79.8
Q ss_pred CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 71 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.+.|+|+|||+|-.....+++. ....+|++||-++.++...++.+...++.++|+++++|++++ ++ +.+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v--~l------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV--EL------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS--CH------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC--CC------CCc
Confidence 4689999999999988777654 224799999999999988888888889999999999999987 22 579
Q ss_pred eeEEEEc-----CCccchHHHHHHHHhccCCCeEEEEec
Q 026461 148 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.|+|+.- +..+..++.+....+.|+|||+++=+.
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS 297 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence 9999874 234456778888889999999887543
No 185
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=1.8e-09 Score=86.41 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=78.5
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
+|||||||.|.....+++..+. +-+|.++|.+|.+++..+++-.... +++.-...|.... .+ .++.+.+++|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~--~~-~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP--SL-KEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch--hc-cCCCCcCccceE
Confidence 7999999999999999987762 3789999999999999988754332 3454444444322 11 112346899977
Q ss_pred EE-----cCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 152 FV-----DADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 152 ~~-----d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.+ ...+..+...++++.++|||||.|++-|.-
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 43 235677888999999999999999998754
No 186
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.92 E-value=5.5e-09 Score=83.07 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=65.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
++.+|||+|||+|..+..++... ...++++|+++++++.+++ .+++++++|+.+.++.+ ..++||
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~-----~~~sfD 77 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF-----PDKSFD 77 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc-----CCCCcC
Confidence 56799999999999999888653 4578999999999988764 13678888876533222 147899
Q ss_pred EEEEcCCc---cchHHHHHHHHhccCC
Q 026461 150 YAFVDADK---DNYCNYHERLMKLLKV 173 (238)
Q Consensus 150 ~V~~d~~~---~~~~~~~~~~~~~L~~ 173 (238)
+|++.... .+....++++.+.+++
T Consensus 78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 78 YVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 99987543 3445666777666554
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.92 E-value=2.1e-08 Score=83.27 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=71.1
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+++.....+...+...+..+|||||||+|..|..+++. ..+|+++|+++.+++.+++++.. .++++++++|+.
T Consensus 12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~ 85 (258)
T PRK14896 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDAL 85 (258)
T ss_pred cCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccc
Confidence 356666666666666667789999999999999999986 35899999999999999988754 257999999987
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCc
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADK 157 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~ 157 (238)
+.. ...||.|+.+.+.
T Consensus 86 ~~~---------~~~~d~Vv~NlPy 101 (258)
T PRK14896 86 KVD---------LPEFNKVVSNLPY 101 (258)
T ss_pred cCC---------chhceEEEEcCCc
Confidence 651 2458999887543
No 188
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=2e-08 Score=85.55 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=92.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...+..|||.-+|.|+.++.+|..-. .+|+++|++|.+++..++|++.+++.+.+..+++|+.+..+.+ +.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~ 256 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GV 256 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------cc
Confidence 44588999999999999999998743 3499999999999999999999999988999999999997764 79
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+|-|++..+. ...+++..+..++++||++-+....
T Consensus 257 aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 257 ADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred CCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEecc
Confidence 9999998754 4467788888999999999987766
No 189
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.90 E-value=4.4e-08 Score=76.89 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=88.4
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC--------EEEEEeCCchhHHHHHHHHHHcCCCCc
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------QITAIDVNRETYEIGLPIIKKAGVDHK 123 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~--------~v~~iD~~~~~~~~a~~~~~~~~~~~~ 123 (238)
..+.+..+..+-.++...+...+||--||+|...+..+....... +++|.|+++++++.+++|+..+++...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 456777888888888777778999999999999988766544222 499999999999999999999999888
Q ss_pred EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----------cchHHHHHHHHhccCCCeEEEEe
Q 026461 124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.+.+.|+.++. + ..+++|.|+.|.+. ..|..+++.+.+.+++..++++.
T Consensus 90 i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 90 IDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred eEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999998874 1 15799999999642 22456677777889996666654
No 190
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.90 E-value=4.6e-09 Score=83.00 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=80.6
Q ss_pred CcHhHHHHHHHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 54 TAPDAGQLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~--~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
++.+..+-.-.|+.... +.-|||||||+|.++..+.+. +..++|+|+|+.+++.|.+.- +. -.++.+|.
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DM 102 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDM 102 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeec
Confidence 44555444444555544 678999999999999888763 567999999999999998732 11 25677787
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcC--------C------ccchHHHHHHHHhccCCCeEEEEe
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDA--------D------KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~--------~------~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
-+-+|. .+++||-+++-. . ......||..++.+|++|+..|+.
T Consensus 103 G~Glpf------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 103 GEGLPF------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCCCCC------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 766653 479999887532 1 122356788899999999988875
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.88 E-value=2.3e-08 Score=90.46 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
....+||||||.|.+++.+|...| +..++|+|+....+..+.+.....++. ++.++..|+..+...+ ..+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence 456899999999999999999988 789999999999999998888888874 5888888875554444 257899
Q ss_pred EEEEc---CCcc--c------hHHHHHHHHhccCCCeEEEE
Q 026461 150 YAFVD---ADKD--N------YCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 150 ~V~~d---~~~~--~------~~~~~~~~~~~L~~gG~lv~ 179 (238)
.|++. .|+. + .+.+++.+.+.|+|||.+.+
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 99885 3321 1 36899999999999998876
No 192
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=5.2e-08 Score=77.96 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=83.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC-ee
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD 149 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~-fD 149 (238)
+++++|||+|.|.-++.+|-..| +.+|+-+|.....+...+......++. +++++++.+++...+ .. ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence 68999999999999999997776 777999999999999999999999985 499999999887432 23 99
Q ss_pred EEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 150 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+|.+.+. .....+.+.+.+++++||.+++
T Consensus 138 ~vtsRAv-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 138 VVTSRAV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence 9998863 3567788889999999888764
No 193
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.86 E-value=3.8e-09 Score=84.15 Aligned_cols=104 Identities=15% Similarity=0.268 Sum_probs=81.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHHcCC-CCcEEEEecchhHHHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
..+..+|||.++|-||.++..++. ++ +|+++|.+|+.++.|.-|==..++ ..+++++.||+.+.++.+ .+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D 203 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DD 203 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cc
Confidence 446789999999999999988874 44 999999999999888654111111 135899999999999887 36
Q ss_pred CCeeEEEEcCCc-----c-chHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADK-----D-NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~-----~-~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+||+|+-|.+. + ...++++++++.|+|||.++.
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 799999988642 1 236788999999999999875
No 194
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.84 E-value=4e-09 Score=84.44 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=75.0
Q ss_pred HHHHHHHHhhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461 59 GQLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 137 (238)
Q Consensus 59 ~~~l~~l~~~~~~~-~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~ 137 (238)
...+..++...... .++|+|||+|..++.+++++. +|+++|+++.+++.|++...........++...+..+++.
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g- 96 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG- 96 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-
Confidence 33444454444443 799999999988888888865 8999999999999988764222111112233323223321
Q ss_pred HHhcccCCCCeeEEEEcCC--ccchHHHHHHHHhccCCCe-EEEE
Q 026461 138 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY 179 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~ 179 (238)
.+++.|+|.+... .-+...+++.+.+.||+.| ++.+
T Consensus 97 ------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 97 ------GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ------CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 2589999987632 3456899999999998866 6665
No 195
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.84 E-value=5.9e-08 Score=81.22 Aligned_cols=101 Identities=15% Similarity=0.047 Sum_probs=71.7
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
+++.....+...+...++.+|||||||+|..|..++... .+|+++|+++.+++.+++++.. ++++++++|+.+
T Consensus 26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~ 98 (272)
T PRK00274 26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALK 98 (272)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhc
Confidence 445554444445555677899999999999999999874 3899999999999999987642 579999999887
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 168 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~ 168 (238)
.... .-.+|.|+.+.+..-...++..+.
T Consensus 99 ~~~~-------~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 99 VDLS-------ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred CCHH-------HcCcceEEEeCCccchHHHHHHHH
Confidence 5211 111577877755433344444444
No 196
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=4.7e-08 Score=80.95 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=71.7
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
+.+....-+...+...++.+|||||||+|..|..+++..+ +|+++|+++.+++.+++++.. ..+++++++|+.+
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~ 86 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK 86 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence 4455544444444556778999999999999999998754 699999999999999987743 3579999999877
Q ss_pred HHHHHHhcccCCCCee---EEEEcCCccchHHHHHHHHh
Q 026461 134 VLDQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK 169 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD---~V~~d~~~~~~~~~~~~~~~ 169 (238)
... ..+| +|+.+.+.......+..+..
T Consensus 87 ~~~---------~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 87 VDL---------PDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred CCh---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 521 1344 77766554444445555443
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.79 E-value=1.8e-07 Score=77.19 Aligned_cols=123 Identities=21% Similarity=0.244 Sum_probs=96.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--H
Q 026461 59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L 135 (238)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l 135 (238)
.+.+..|.....+-+||||.||.|...+-.....+. ..+|...|.++..++.+++.++..|+.+-++|.++|+.+. +
T Consensus 124 ~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 124 RQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred HHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence 333334444457789999999999999988888874 3689999999999999999999999998779999999885 3
Q ss_pred HHHHhcccCCCCeeEEEEcCCccc------hHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461 136 DQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~~~~------~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
..+ ....+++++.+-.+. ....+..+...+.|||++|.-+--|+-.
T Consensus 204 ~~l------~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 204 AAL------DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred hcc------CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 333 467899998763322 3446777789999999999877666543
No 198
>PRK04148 hypothetical protein; Provisional
Probab=98.75 E-value=1.2e-07 Score=70.24 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 136 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~-~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~ 136 (238)
.++.|.......++++|||||||+|. .+..|++. +..|+++|+++..++.++++ .++++.+|..+--.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 34444444444456789999999997 66677753 57999999999998888765 26888999887544
Q ss_pred HHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccC
Q 026461 137 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK 172 (238)
Q Consensus 137 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~ 172 (238)
.+ -+.+|+|+.--++......+-.+.+.+.
T Consensus 73 ~~------y~~a~liysirpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 73 EI------YKNAKLIYSIRPPRDLQPFILELAKKIN 102 (134)
T ss_pred HH------HhcCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 44 4799999988777666666666655443
No 199
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.71 E-value=8.4e-08 Score=79.63 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=69.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-HcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.|++|+=||||. -.+++.|++....+..|+++|+++++++.+++.+. ..++..+++|+.+|..+....+ ..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------cc
Confidence 356999999994 55667777654336789999999999999999888 6677889999999987764333 79
Q ss_pred eeEEEEcCCcc----chHHHHHHHHhccCCCeEEEEec
Q 026461 148 FDYAFVDADKD----NYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~~~----~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
||+||+.+-.. .-.+.++.+.+.++||+.|++-.
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 99999986544 66789999999999999999863
No 200
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.68 E-value=7.7e-08 Score=82.38 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=70.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC---------CCCcEEEEecchhHH-HH-HH
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALSV-LD-QL 138 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~-l~-~~ 138 (238)
++.+|||+|||-|+-..-+..+- -.+++|+|++.+.++.|++...... ..-...++.+|.... +. .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56799999999888666555542 4799999999999999999883311 112356788887642 22 12
Q ss_pred HhcccCCCCeeEEEEcC-------CccchHHHHHHHHhccCCCeEEEE
Q 026461 139 LKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~-------~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
. +...+||+|-+-- .......++..+..+|+|||+++.
T Consensus 140 ~---~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 140 P---PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp S---STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred c---ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 1135999997642 233456799999999999999886
No 201
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.5e-07 Score=79.75 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=96.1
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-c
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-E 130 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d 130 (238)
.++.|..+.++-.|++..++..|||=-||||...+...-. +.+++|+|++..+++-|+.|++..++.+ ..+... |
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D 254 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD 254 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence 4678999999999999989999999999999998876653 6899999999999999999999998765 444444 8
Q ss_pred hhHHHHHHHhcccCCCCeeEEEEcCCc------------cchHHHHHHHHhccCCCeEEEEe
Q 026461 131 ALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 131 ~~~~l~~~~~~~~~~~~fD~V~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.... +. ...+|.|..|.+- ..+.++++.+.+.|++||.+++-
T Consensus 255 a~~lp--l~-----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 255 ATNLP--LR-----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred cccCC--CC-----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 86652 41 3469999999641 22567888888999999998874
No 202
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.65 E-value=1.2e-07 Score=81.64 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=88.3
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
...++.+|||.++..|+-|.++|..+...|.|++-|.+...+...+.++.+.|+.+ .-+.+.|..++.... + .+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~----~-~~ 311 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKE----F-PG 311 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccc----c-Cc
Confidence 34456799999999999999999999888999999999999999999999999865 556677776543221 1 34
Q ss_pred CeeEEEEcCCccch-------------------------HHHHHHHHhccCCCeEEEEeccc
Q 026461 147 SFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 147 ~fD~V~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+||-|++|++++.. .+++..+.+++++||+||-+.+.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 89999999865541 34555566899999999976554
No 203
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.64 E-value=3.6e-07 Score=79.20 Aligned_cols=113 Identities=17% Similarity=0.223 Sum_probs=69.2
Q ss_pred CccCcHhHHHHH-HHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE
Q 026461 51 MMGTAPDAGQLM-AMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 127 (238)
Q Consensus 51 ~~~~~~~~~~~l-~~l~~~~~--~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (238)
+..+.+...+-+ .......+ +..|||+-||.|..++.+|... .+|+|||+++++++.|++|+..+++. +++|+
T Consensus 174 FfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~ 249 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEFI 249 (352)
T ss_dssp ---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEE
T ss_pred CccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEE
Confidence 334455554443 33333322 3389999999999999999864 59999999999999999999999985 59999
Q ss_pred ecchhHHHHHHHhc---------ccCCCCeeEEEEcCCccchH-HHHHHH
Q 026461 128 ESEALSVLDQLLKY---------SENEGSFDYAFVDADKDNYC-NYHERL 167 (238)
Q Consensus 128 ~~d~~~~l~~~~~~---------~~~~~~fD~V~~d~~~~~~~-~~~~~~ 167 (238)
.+++.++...+... .-....+|+|++|.+..... ..++.+
T Consensus 250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 98887653332100 00123789999998765554 344444
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.2e-06 Score=72.13 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=74.3
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
.+....+-+-..+...+...|||||+|.|..|..|++.. .+|+++|+++..++..++.+. ..++++++++|+.+
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk 87 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALK 87 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhc
Confidence 334343333344445567899999999999999999964 589999999999999998875 33679999999988
Q ss_pred H-HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHH
Q 026461 134 V-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 168 (238)
Q Consensus 134 ~-l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~ 168 (238)
. ++.+ ..++.|+.+.+-.-..+++..+.
T Consensus 88 ~d~~~l-------~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 88 FDFPSL-------AQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred Ccchhh-------cCCCEEEEcCCCcccHHHHHHHH
Confidence 6 2222 17889998876544455544443
No 205
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.7e-08 Score=71.55 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=72.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...+++++|+|||+|...+..+ ++....|+|+|++|++++.++.|.....++ ++++++|+.+.... .+.
T Consensus 46 diEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g~ 114 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GGI 114 (185)
T ss_pred cccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CCe
Confidence 3568899999999999885444 454678999999999999999999888763 68999998877443 589
Q ss_pred eeEEEEcCCc-----cchHHHHHHHHhccC
Q 026461 148 FDYAFVDADK-----DNYCNYHERLMKLLK 172 (238)
Q Consensus 148 fD~V~~d~~~-----~~~~~~~~~~~~~L~ 172 (238)
||.++++.+. ..-.++++..+++.+
T Consensus 115 fDtaviNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 115 FDTAVINPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred EeeEEecCCCCcccccccHHHHHHHHHHHH
Confidence 9999998642 223556666655544
No 206
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.60 E-value=9.3e-07 Score=75.00 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=85.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH--HHcC---C-CCcEEEEecchhHHHHHHHhcc
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--KKAG---V-DHKINFIESEALSVLDQLLKYS 142 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~~~~---~-~~~v~~~~~d~~~~l~~~~~~~ 142 (238)
....++|-+|-|.|.....+.+. |.-.+|+-+|.+|.+++.++++. +..+ + +.|++++..|+..++...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 45679999999999999999885 54689999999999999998443 3322 1 268999999999999876
Q ss_pred cCCCCeeEEEEcCCccc--------hHHHHHHHHhccCCCeEEEEec
Q 026461 143 ENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
...||+|++|-..+. ..+++..+.+.|+++|.+|+..
T Consensus 363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 579999999953222 2577888889999999999863
No 207
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.60 E-value=2.3e-07 Score=77.83 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=77.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
...+.|||+|||+|..+.+.+.+- ..+|.++|.+ ++.++|++.++.+++.+||.++.|.++++ ++ +++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence 467899999999999999888763 5799999985 68899999999999999999999999886 44 5899
Q ss_pred eEEEEcCC-----ccchHHHHHHHHhccCCCeEEE
Q 026461 149 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 149 D~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv 178 (238)
|+|+...- .+.+.+-+-.+.+.|+|.|...
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 99997631 1122222233358999999765
No 208
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=6.7e-07 Score=73.00 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=74.1
Q ss_pred HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461 56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135 (238)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 135 (238)
+....-+..-+...++..|||||.|+|..|..|++. +.+|+++|+++.+++...+.++....+++.++++||....
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~- 119 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT- 119 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-
Confidence 444444444455677889999999999999999996 5699999999999999999998777778999999998766
Q ss_pred HHHHhcccCCCCeeEEEEcCCcc
Q 026461 136 DQLLKYSENEGSFDYAFVDADKD 158 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~~~ 158 (238)
. ...||.++.+-+..
T Consensus 120 -d-------~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 120 -D-------LPRFDGCVSNLPYQ 134 (315)
T ss_pred -C-------CcccceeeccCCcc
Confidence 1 36899999875543
No 209
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.58 E-value=7.8e-07 Score=71.15 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=73.5
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEE
Q 026461 74 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 153 (238)
Q Consensus 74 vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~ 153 (238)
|.||||--|+..++|++.-. ..+++++|+++..++.|++++...|+.+++++..+|.++.++. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999999754 5789999999999999999999999999999999999887653 234799988
Q ss_pred cC-CccchHHHHHHHHhccCCCeEEEEe
Q 026461 154 DA-DKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 154 d~-~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+ +-....++++.....++....+++.
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence 75 3344567777776667666677775
No 210
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.56 E-value=2.7e-07 Score=75.62 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=88.8
Q ss_pred CcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhC---C-CCCEEEEEeCCc--------------------
Q 026461 54 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVNR-------------------- 105 (238)
Q Consensus 54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~---~-~~~~v~~iD~~~-------------------- 105 (238)
+...-...|..++. ..-|..|+|+||..|.+++.++..+ . +.-+++++|--.
T Consensus 54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~ 133 (248)
T PF05711_consen 54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE 133 (248)
T ss_dssp SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence 44545555555544 2347789999999999987765432 2 234688888421
Q ss_pred ------hhHHHHHHHHHHcCC-CCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-cchHHHHHHHHhccCCCeEE
Q 026461 106 ------ETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIA 177 (238)
Q Consensus 106 ------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-~~~~~~~~~~~~~L~~gG~l 177 (238)
-..+..++++.+.|+ .++++++.|...+.++... .+.+-++.+|++. +.....++.+++.|.|||+|
T Consensus 134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 134555666666664 3579999999988887542 4688888999753 44577888899999999999
Q ss_pred EEeccccCccccCCCCCCCCCcccchHHHHHHHHHH
Q 026461 178 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS 213 (238)
Q Consensus 178 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (238)
++||....| +.+++++|.+.
T Consensus 209 i~DDY~~~g----------------cr~AvdeF~~~ 228 (248)
T PF05711_consen 209 IFDDYGHPG----------------CRKAVDEFRAE 228 (248)
T ss_dssp EESSTTTHH----------------HHHHHHHHHHH
T ss_pred EEeCCCChH----------------HHHHHHHHHHH
Confidence 999987644 67778888554
No 211
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.53 E-value=4e-07 Score=70.17 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=60.4
Q ss_pred EEEeCCchhHHHHHHHHHHcC--CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCC
Q 026461 99 TAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 173 (238)
Q Consensus 99 ~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~ 173 (238)
+|+|+|+++++.|++.....+ ...+++++++|+.+. + + ..++||+|++.. ...+....++++.+.|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P-F-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C-C-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 589999999999987765322 234699999998765 2 1 257999998864 344567889999999999
Q ss_pred CeEEEEeccc
Q 026461 174 GGIAVYDNTL 183 (238)
Q Consensus 174 gG~lv~~~~~ 183 (238)
||.+++-+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999887654
No 212
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.51 E-value=1.3e-06 Score=73.27 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=97.1
Q ss_pred HHhhhhcCCCCcHHHHHHHHhccCCCCCChHHHHHHHH-HhcCCCCCccCcHhHHHHHHHHHhh-cCCCEEEEEcccccH
Q 026461 6 KQAASSKGLLQSEDLYRYILETSVYPREPEPLKKIRDV-TADHPWAMMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGY 83 (238)
Q Consensus 6 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~ 83 (238)
.+-|...++..-+.+..++... ...+.+.++... +... ..+.-++..-..|...+.. ..+-+|+-.||++|-
T Consensus 55 ~~r~~~~g~~s~~~y~~~L~~~----~~~~e~~~li~~ltine--T~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGE 128 (287)
T PRK10611 55 VRRLRSLGLNDFGQYLALLESN----QNSAEWQAFINALTTNL--TAFFREAHHFPILAEHARRRSGEYRVWSAAASTGE 128 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHhcC----CCHHHHHHHHHHhhCCC--CCccCCcHHHHHHHHHHHhcCCCEEEEEccccCCH
Confidence 3444445555555555555531 122344444332 2222 2333455555555544432 234699999999997
Q ss_pred HH----HHHHhhCC---CCCEEEEEeCCchhHHHHHHHH------------------HHc-----C-------CCCcEEE
Q 026461 84 SL----LLTALTIP---EDGQITAIDVNRETYEIGLPII------------------KKA-----G-------VDHKINF 126 (238)
Q Consensus 84 ~t----~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~-----~-------~~~~v~~ 126 (238)
=. +.+.+..+ ...+|+|+|+|+.+++.|++.. ... + +...|+|
T Consensus 129 EpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F 208 (287)
T PRK10611 129 EPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDF 208 (287)
T ss_pred HHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEE
Confidence 33 33334332 1368999999999999997642 110 1 2245677
Q ss_pred EecchhHHHHHHHhcccCCCCeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEec
Q 026461 127 IESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
...|..+.. . +..+.||+||+-. ........++.+.+.|+|||+|++..
T Consensus 209 ~~~NL~~~~--~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 209 QQLNLLAKQ--W----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EcccCCCCC--C----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 777775521 0 1147899999853 23345678889999999999998853
No 213
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.51 E-value=2.3e-07 Score=75.37 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=59.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHH-HHHHHHHcCCCCcEE-EEecchhHH-HHHHHhcccCC
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENE 145 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~-l~~~~~~~~~~ 145 (238)
.+.+.|||+|||+|.+|..+++. + ..+|+++|+++.++.. .+++ .++. +...|+... +.... ..-
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~ 141 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDF 141 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCc
Confidence 35678999999999999999985 2 5789999999977765 2221 2332 333344321 11110 013
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
..+|++|+.. ...+..+.++|++ |.+++
T Consensus 142 ~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 142 ATFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 4788888754 2246777888888 65543
No 214
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.50 E-value=9.1e-07 Score=73.87 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=76.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-----cEEEEecchhHH-HHHHHhcc
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSV-LDQLLKYS 142 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~-l~~~~~~~ 142 (238)
.+...++++|||-|+-.+-+-.+- -+.++|+||..-.++.|++..+...... .+.|+.+|.... +..+.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e-- 191 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE-- 191 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc--
Confidence 456789999999999887766542 4799999999999999998877543222 268899997652 333321
Q ss_pred cCCCCeeEEEEc---C----CccchHHHHHHHHhccCCCeEEEE
Q 026461 143 ENEGSFDYAFVD---A----DKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 143 ~~~~~fD~V~~d---~----~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+...+||+|-+- + ......-++.++..+|+|||+++-
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 123459999542 2 223446688899999999999985
No 215
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.4e-07 Score=78.32 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=89.2
Q ss_pred CccCcHhHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE
Q 026461 51 MMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126 (238)
Q Consensus 51 ~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (238)
++......++.|+..+. ....+.++|+.||+|..++.++... .+|+|||++++.++.|+.|...+|++ +.+|
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~F 435 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NATF 435 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-ceee
Confidence 34556677888887765 4456789999999999999999864 59999999999999999999999986 4999
Q ss_pred EecchhHHHHHHHhcccCCCCee-EEEEcCCccch-HHHHHHHHhccCCCeEEE
Q 026461 127 IESEALSVLDQLLKYSENEGSFD-YAFVDADKDNY-CNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 127 ~~~d~~~~l~~~~~~~~~~~~fD-~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv 178 (238)
++|.+++.++.+... .-++-+ ++++|.+.... ..++..+...-++-=++.
T Consensus 436 i~gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy 487 (534)
T KOG2187|consen 436 IVGQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY 487 (534)
T ss_pred eecchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence 999999988877432 112445 66778665544 344444444433443333
No 216
>PRK10742 putative methyltransferase; Provisional
Probab=98.42 E-value=2.8e-06 Score=69.25 Aligned_cols=88 Identities=10% Similarity=0.179 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc------C--CCCcEEEEec
Q 026461 60 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------G--VDHKINFIES 129 (238)
Q Consensus 60 ~~l~~l~~~~~~~--~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~--~~~~v~~~~~ 129 (238)
+.|...+...++. +|||+.+|.|.-++.++.. +++|+++|-++......++++... + +..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4555555555555 8999999999999999975 567999999999999999999885 2 2257999999
Q ss_pred chhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461 130 EALSVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 130 d~~~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
|+.+++... ..+||+||+|..
T Consensus 153 da~~~L~~~------~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI------TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC------CCCCcEEEECCC
Confidence 999998875 458999999964
No 217
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.40 E-value=1.4e-05 Score=65.33 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=85.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
+..++||||+|.|..|..++..+. +|++.|.|+.|.... ++.|+ +++. ..++ .. ...+||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL----~~kg~----~vl~--~~~w-~~------~~~~fD 153 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRL----SKKGF----TVLD--IDDW-QQ------TDFKFD 153 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHH----HhCCC----eEEe--hhhh-hc------cCCceE
Confidence 556899999999999999998765 799999998875544 44453 4443 3332 21 146999
Q ss_pred EEEEcC---CccchHHHHHHHHhccCCCeEEEEeccccCccc--------cCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 026461 150 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV--------AVPEEQVPDHFRGSSRQAILDLNRSLADDP 218 (238)
Q Consensus 150 ~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (238)
+|.+-. -+.....+++.+.+.|+|+|++++.=++.-..+ ..|.+..+-.-+ +....+..+. .+.+-.
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~-~~E~~v~~l~-~v~~p~ 231 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGA-TFEEQVSSLV-NVFEPA 231 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCC-cHHHHHHHHH-HHHHhc
Confidence 998643 244567788999999999999998765522221 112111111112 2555566777 455566
Q ss_pred CeeEE
Q 026461 219 RVQLS 223 (238)
Q Consensus 219 ~~~~~ 223 (238)
+|++.
T Consensus 232 GF~v~ 236 (265)
T PF05219_consen 232 GFEVE 236 (265)
T ss_pred CCEEE
Confidence 77765
No 218
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.40 E-value=5.2e-06 Score=70.07 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=73.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHH
Q 026461 59 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 138 (238)
Q Consensus 59 ~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~ 138 (238)
.+++..|. ..++..++|+.+|.|+.|..+++.++ .++|+++|.++.+++.+++.+... .+++++++++..++...+
T Consensus 10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305)
T ss_pred HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence 44444442 34667999999999999999999987 599999999999999999988654 468999999988766555
Q ss_pred HhcccCCCCeeEEEEcCCc
Q 026461 139 LKYSENEGSFDYAFVDADK 157 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~~ 157 (238)
... ...++|.|++|.+.
T Consensus 86 ~~~--~~~~vDgIl~DLGv 102 (305)
T TIGR00006 86 DEL--LVTKIDGILVDLGV 102 (305)
T ss_pred Hhc--CCCcccEEEEeccC
Confidence 321 23579999998544
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.39 E-value=2.7e-06 Score=72.53 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=83.8
Q ss_pred CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCchhHHHHHHHHHHcCCCC
Q 026461 49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH 122 (238)
Q Consensus 49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~ 122 (238)
.+....+.....++..++...+..+|+|-+||+|.....+.+.+ ....+++|+|+++..+..++-++.-.+...
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 44555678889999999977777789999999999998887743 126799999999999999998887666543
Q ss_pred c-EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc------------------------hHHHHHHHHhccCCCeEE
Q 026461 123 K-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------------------YCNYHERLMKLLKVGGIA 177 (238)
Q Consensus 123 ~-v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~------------------------~~~~~~~~~~~L~~gG~l 177 (238)
. ..+..+|........ ....||+|+.+.+... ...++..+...|++||.+
T Consensus 105 ~~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp BGCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred ccccccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 3 468888876542210 1369999998743111 024678888999999964
No 220
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=4.6e-06 Score=68.98 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=111.2
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--CCC-CcEEEEecchhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
+..+|+++|-||-|-|......+.+ +.-..++-+|++...++..++++... |+. .++.+..||...+++...
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~---- 192 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK---- 192 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence 4678999999999999998888877 44578999999999999999988753 333 679999999999988763
Q ss_pred CCCCeeEEEEcCCccc-------hHHHHHHHHhccCCCeEEEEec-cccCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 026461 144 NEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 215 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 215 (238)
.++||+|+.|....- ...+++.+.+.||++|+++... ..| -+.+ ..+-++.|-+.+.
T Consensus 193 -~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w------------l~~~--~i~e~r~~~~~~f 257 (337)
T KOG1562|consen 193 -ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW------------LHLD--YIKEGRSFCYVIF 257 (337)
T ss_pred -cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh------------HHHH--HHHHHHHhHHHhc
Confidence 589999999863211 2568888899999999988742 232 1111 4445777777776
Q ss_pred cCCCeeEEeeecC----CeeEEEEE
Q 026461 216 DDPRVQLSHVALG----DGITICRR 236 (238)
Q Consensus 216 ~~~~~~~~~lp~~----~G~~i~~~ 236 (238)
..-.+-.+..|.. -|+.+|.+
T Consensus 258 ~~t~ya~ttvPTypsg~igf~l~s~ 282 (337)
T KOG1562|consen 258 DLTAYAITTVPTYPSGRIGFMLCSK 282 (337)
T ss_pred CccceeeecCCCCccceEEEEEecc
Confidence 6666666666633 56666653
No 221
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.39 E-value=5.9e-06 Score=66.11 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-------HcCC-CCcEEEEec
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIES 129 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~v~~~~~ 129 (238)
...++. .+...+....+|||||.|...++.|...+ ..+.+|||+.+...+.|+.... ..|. ..++++.++
T Consensus 31 ~~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 31 VSKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344443 34566778999999999999988887655 6679999999998887765433 2343 256888999
Q ss_pred chhHH--HHHHHhcccCCCCeeEEEEcCCc--cchHHHHHHHHhccCCCeEEEEeccc
Q 026461 130 EALSV--LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 130 d~~~~--l~~~~~~~~~~~~fD~V~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|..+. .... ...-|+||++... +.....+......||+|..||.-.-+
T Consensus 109 dfl~~~~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 109 DFLDPDFVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp -TTTHHHHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred CccccHhHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 98653 2322 2467999998653 33444556666788999888764434
No 222
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.35 E-value=1.5e-05 Score=60.05 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=70.4
Q ss_pred HHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHHcC--CCCcEEEEec
Q 026461 59 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIES 129 (238)
Q Consensus 59 ~~~l~~l~~~----~~~~~vLeiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~ 129 (238)
.+++..+... .++..|+|+|||.|+.+..++..+ .+..+|++||.++..++.+.+..+..+ +..++++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 4445555444 677899999999999999999832 136899999999999999999888877 4455666666
Q ss_pred chhHHHHHHHhcccCCCCeeEEEEcCCccch-HHHHHHHHh
Q 026461 130 EALSVLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMK 169 (238)
Q Consensus 130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-~~~~~~~~~ 169 (238)
+..+... ....++++--+..... ...++...+
T Consensus 90 ~~~~~~~--------~~~~~~~vgLHaCG~Ls~~~l~~~~~ 122 (141)
T PF13679_consen 90 DIADESS--------SDPPDILVGLHACGDLSDRALRLFIR 122 (141)
T ss_pred chhhhcc--------cCCCeEEEEeecccchHHHHHHHHHH
Confidence 5543311 3566666655544443 334444433
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.31 E-value=2.3e-06 Score=67.10 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=61.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENEG 146 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~~ 146 (238)
++.++||+||++|+++..+++...+.++|+++|+.+. ... ..+.++++|..+. ...+... ....+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 4579999999999999999998744689999999877 111 3466666665431 1111110 00136
Q ss_pred CeeEEEEcCCcc--------c------hHHHHHHHHhccCCCeEEEEe
Q 026461 147 SFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 147 ~fD~V~~d~~~~--------~------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
++|+|++|..+. . ....+..+...|++||.+|+.
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 999999997211 0 122334445789999988875
No 224
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.30 E-value=1.2e-05 Score=73.39 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=65.6
Q ss_pred CcHhHHHHHHHHHhhc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHHcC
Q 026461 54 TAPDAGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKKAG 119 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~G~G~~t~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~~~ 119 (238)
..+..++++..++... ...+|||.|||+|...+.++..++. ...++++|+++..+..++.++...+
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3455555555443211 3468999999999999998876641 2578999999999999999988765
Q ss_pred CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461 120 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 120 ~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
. ..+++...|.......... ...+.||+|+.+.+
T Consensus 88 ~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNPP 121 (524)
T TIGR02987 88 L-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNPP 121 (524)
T ss_pred C-CCceeeecccccccccccc--cccCcccEEEeCCC
Confidence 2 2355565554432110000 11368999998753
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.28 E-value=8e-06 Score=65.26 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=74.2
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 67 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
...++.+||-+|+++|....+++....+.|.|.++|.++......-...++ .+|+--+.+|+...-.-. .--+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~----~lv~ 142 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYR----MLVE 142 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGT----TTS-
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhh----cccc
Confidence 355678999999999999999999998899999999999765554443333 256887888986532111 1146
Q ss_pred CeeEEEEcCCccch-HHHHHHHHhccCCCeEEEEe
Q 026461 147 SFDYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 147 ~fD~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv~~ 180 (238)
..|+||.|-..++- .-+..++...||+||.+++.
T Consensus 143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 99999999655444 44556677899999987763
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.27 E-value=9.4e-06 Score=76.55 Aligned_cols=98 Identities=11% Similarity=0.142 Sum_probs=72.9
Q ss_pred CcHhHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhC---CC-----------------------------------
Q 026461 54 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTI---PE----------------------------------- 94 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~---~~----------------------------------- 94 (238)
+.+..+..+-.+..- .+...++|-+||+|...+..|... ++
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 444444444445443 346789999999999998876521 11
Q ss_pred ---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461 95 ---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 95 ---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+..... ..++||+|+.+.+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP 312 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP 312 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence 23799999999999999999999999888999999998763221 1357999999864
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1e-05 Score=64.18 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=71.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~ 145 (238)
..+...|+|+|+..|.++..+++.+.+.++|+++|+.|-. .. ..|.++++|+.+ .+..+... ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~-l~~ 109 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEA-LGG 109 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHH-cCC
Confidence 3456899999999999999999998878889999998752 12 348888888753 22222221 124
Q ss_pred CCeeEEEEcCCc--------cch------HHHHHHHHhccCCCeEEEEeccc
Q 026461 146 GSFDYAFVDADK--------DNY------CNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 146 ~~fD~V~~d~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.++|+|++|..+ .++ ...++.+...|+|||.+++....
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 457999999643 111 22344445799999999987533
No 228
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.25 E-value=3.8e-06 Score=62.60 Aligned_cols=84 Identities=25% Similarity=0.408 Sum_probs=58.8
Q ss_pred EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcC------Cc------cchHHHH
Q 026461 97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DK------DNYCNYH 164 (238)
Q Consensus 97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~------~~------~~~~~~~ 164 (238)
+|+++|+.+++++.+++.+.+.++.++++++..+=..+...+. .+++|+++++- ++ ......+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999999999999999999998899999865544433331 24899998872 11 1235677
Q ss_pred HHHHhccCCCeEEEEeccccCcc
Q 026461 165 ERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 165 ~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
+.++++|++||+|++ +.++|+
T Consensus 76 ~~al~lL~~gG~i~i--v~Y~GH 96 (140)
T PF06962_consen 76 EAALELLKPGGIITI--VVYPGH 96 (140)
T ss_dssp HHHHHHEEEEEEEEE--EE--ST
T ss_pred HHHHHhhccCCEEEE--EEeCCC
Confidence 888899999999988 567776
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.25 E-value=2.5e-05 Score=61.87 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=84.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecchhHHHHHHHhcccCCC
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
.+..+||++|-|-|.....+.++-| .+-+-||.+|+.++..+++ |.. .+|-++.+--++.++.+. ++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~----gw~ek~nViil~g~WeDvl~~L~-----d~ 168 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDW----GWREKENVIILEGRWEDVLNTLP-----DK 168 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhc----ccccccceEEEecchHhhhcccc-----cc
Confidence 6788999999999999988888654 4567799999998877765 333 568888998888888885 56
Q ss_pred CeeEEEEcCCcc---chHHHHHHHHhccCCCeEEEEecccc
Q 026461 147 SFDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 147 ~fD~V~~d~~~~---~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
.||=|+-|...+ +..++.+.+.++|||+|++-+-|.+-
T Consensus 169 ~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 169 HFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred CcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 799999997543 34567788889999999998876664
No 230
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.22 E-value=4.3e-06 Score=62.83 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=50.0
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.++|||||.|..+.+++...+ ..+|+++|+++.+++.++++++.+++. ++++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence 389999999999999998876 679999999999999999999988875 4887776543
No 231
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.21 E-value=2.4e-06 Score=67.92 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCCEEEEEcccccHHHHH----HHhhC----CCCCEEEEEeCCchhHHHHHHHH--------------HH-----cC---
Q 026461 70 NAKKTIEIGVFTGYSLLL----TALTI----PEDGQITAIDVNRETYEIGLPII--------------KK-----AG--- 119 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~----la~~~----~~~~~v~~iD~~~~~~~~a~~~~--------------~~-----~~--- 119 (238)
++-+|+-+||++|-=+-. +.+.. +...+|+|+|+|+.+++.|++-. .+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 556899999999974333 33311 11358999999999999996521 11 11
Q ss_pred -----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----cchHHHHHHHHhccCCCeEEEEec
Q 026461 120 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 120 -----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+..+|+|...|..+..+. .+.||+||+-... ......++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcc-------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125789999998872222 5899999997642 333677888899999999999854
No 232
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.20 E-value=0.0001 Score=62.90 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=76.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE--EecchhHHHHHHHhcccC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSEN 144 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~l~~~~~~~~~ 144 (238)
++..++|+|||+|.-+..|++++.+ ..+++++|+|.+.++.+.+.+....++ .+++ +.+|..+.+..+... ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~-~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRP-EN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccc-cc
Confidence 4558999999999999999888742 367999999999999999998744443 3555 788877765544210 01
Q ss_pred CCCeeEEEEcC-C-----ccchHHHHHHHHh-ccCCCeEEEE
Q 026461 145 EGSFDYAFVDA-D-----KDNYCNYHERLMK-LLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~-~-----~~~~~~~~~~~~~-~L~~gG~lv~ 179 (238)
.....+++.-+ . +.....+++.+.+ .|+|||.+++
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 23456665533 2 3334578888888 9999998877
No 233
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.19 E-value=1.7e-05 Score=69.19 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCC-cEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+-+|||.=+|+|.=++..+..++...+|+.-|+++++++..++|++.+++.+ ++++.+.|+...+... ...|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cccC
Confidence 34589999999999999999887656799999999999999999999999987 7999999998887422 5899
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+|=+|.. .....|++.+.+.++.||+|.+-
T Consensus 123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp EEEEE--S-S--HHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEe
Confidence 99999963 34478999999999999999984
No 234
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.19 E-value=4.2e-05 Score=63.55 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=71.9
Q ss_pred CCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHH-----cC------------------
Q 026461 71 AKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AG------------------ 119 (238)
Q Consensus 71 ~~~vLeiG~G~G~----~t~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~------------------ 119 (238)
+-+|+-+||++|- .++.+.+.++. ..+|+++|+|...++.|+.-.=. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6799999999996 34445555542 57899999999999998642100 11
Q ss_pred -----CCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEe
Q 026461 120 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 120 -----~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+...|.|...|..+..+ . .+.||+||+-.. ...-...++.....|+|||+|++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-c------cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 11346666666655432 2 578999998643 333467788888999999999985
No 235
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.17 E-value=4.5e-06 Score=64.67 Aligned_cols=100 Identities=9% Similarity=0.140 Sum_probs=77.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
...+.|+|+|+|..+...+.. ..+|++||.+|...+.|.+|+.-.|. .+++++.+|+.+. .+ ...|+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~f-------e~ADv 99 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--DF-------ENADV 99 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--cc-------cccce
Confidence 378999999999999888876 35999999999999999999866665 5699999999886 22 56788
Q ss_pred EEEcC-----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 151 AFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 151 V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|++.. -.+.....+..++..|+-++.++-..+.
T Consensus 100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred eHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence 87542 1222345566777788988888865554
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.14 E-value=1.6e-05 Score=66.26 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=81.3
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
+++...+-+...+...+...|||||+|.|..|..|++.. .+++++|+++.+++..++.+. ..++++++.+|+.+
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK 87 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence 455666666666666688899999999999999999875 699999999999999988764 34679999999987
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccC---CCeEEEEeccc
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK---VGGIAVYDNTL 183 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~---~gG~lv~~~~~ 183 (238)
+-.... -......|+.+.+......++..+...-+ ...++++..-.
T Consensus 88 ~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~ 136 (262)
T PF00398_consen 88 WDLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEV 136 (262)
T ss_dssp SCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHH
T ss_pred cccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhh
Confidence 621100 01344566666554444455555554222 34566665433
No 237
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.13 E-value=6.7e-05 Score=59.78 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=82.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
..++.||||--||.+.++....+ ...+++.|+++..++.|.+++.++++.++++...+|.+..+.. ...+|.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d~ 88 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEIDV 88 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcCE
Confidence 34499999999999999999876 7899999999999999999999999999999999998655442 358999
Q ss_pred EEEcC-CccchHHHHHHHHhccCCCeEEEEe
Q 026461 151 AFVDA-DKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 151 V~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|++.+ +-....++++.-.+.|+.--.+++.
T Consensus 89 ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 89 IVIAGMGGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred EEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence 99875 3334567777777777643455543
No 238
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.12 E-value=0.00011 Score=63.44 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---C----------------------------CC------
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---E----------------------------DG------ 96 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~---~----------------------------~~------ 96 (238)
+....+..+-.+..-.+...++|-=||+|...+..|...+ | .+
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 3444444444455444556899999999999988776542 1 11
Q ss_pred -EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc-----------cchHHHH
Q 026461 97 -QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYH 164 (238)
Q Consensus 97 -~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~-----------~~~~~~~ 164 (238)
.++|+|+++.+++.|+.|...+|+.+.|+|.++|+..+-+. .+.+|+|+++.+- ..|..+.
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFG 327 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence 47899999999999999999999999999999999776332 1699999998642 1345555
Q ss_pred HHHHhccCCCeEEEEe
Q 026461 165 ERLMKLLKVGGIAVYD 180 (238)
Q Consensus 165 ~~~~~~L~~gG~lv~~ 180 (238)
+.+.+.++..+..|+.
T Consensus 328 ~~lk~~~~~ws~~v~t 343 (381)
T COG0116 328 RTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHhcCCceEEEE
Confidence 6666777777777663
No 239
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.10 E-value=6.3e-05 Score=58.56 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=93.9
Q ss_pred HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
+..--..+.++-..+|..|+|+|+-.|++++++|..+- ...+|+++|++-...+-+... .++|.|+.++..
T Consensus 55 p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~ 128 (237)
T COG3510 55 PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSST 128 (237)
T ss_pred HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCC
Confidence 34444556666677999999999999999999997542 236899999986654433221 257999999876
Q ss_pred HH--HHHHHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHH
Q 026461 133 SV--LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 208 (238)
Q Consensus 133 ~~--l~~~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 208 (238)
+. ..+...- .+.-+-=+|+.|+ .+.+...-++.+.++|.-|-++++.|....+... +..++.. -.+ - .+
T Consensus 129 dpai~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~~~p~~~-g~g-P---~~ 201 (237)
T COG3510 129 DPAIAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-PVLPWRF-GGG-P---YE 201 (237)
T ss_pred CHHHHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-cccchhc-CCC-h---HH
Confidence 52 1111100 0112222444554 3444556667777999999999998887666532 2222211 111 1 44
Q ss_pred HHHHHhhcCC-Cee
Q 026461 209 DLNRSLADDP-RVQ 221 (238)
Q Consensus 209 ~~~~~l~~~~-~~~ 221 (238)
...++++.+| +|+
T Consensus 202 AVe~ylr~~p~~yE 215 (237)
T COG3510 202 AVEAYLREFPQDYE 215 (237)
T ss_pred HHHHHHHhCCcccc
Confidence 5566677788 554
No 240
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=62.72 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=77.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC------CCCcEEEEecchhHHHHHHHhcccCC
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
-.+.|||||.|+..+.++..+| +.-+.|.||--...++.++.+.... .-.++.++..++...++.+...
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k---- 136 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK---- 136 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh----
Confidence 4689999999999999999998 8899999998888888888887654 1245888999999998887543
Q ss_pred CCeeEEEEcCCccc-----------hHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~ 179 (238)
++..-.|+--+.++ ...++....-+|++||.+..
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 55554443211111 24567777789999997764
No 241
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.05 E-value=2.9e-05 Score=61.54 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=77.2
Q ss_pred cCCCCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE
Q 026461 46 DHPWAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 125 (238)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~ 125 (238)
...||.. | ...++..+....+...|.|.|||.+..+.. ++..-+|.+.|+... .+ .
T Consensus 52 v~~WP~n---P-vd~iI~~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~--------------n~--~ 107 (219)
T PF05148_consen 52 VKKWPVN---P-VDVIIEWLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP--------------NP--R 107 (219)
T ss_dssp HCTSSS----H-HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------ST--T
T ss_pred HhcCCCC---c-HHHHHHHHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC--------------CC--C
Confidence 3457653 2 445666666665567999999999988744 333457999999643 12 3
Q ss_pred EEecchhHHHHHHHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccch
Q 026461 126 FIESEALSVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSS 203 (238)
Q Consensus 126 ~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (238)
+..+|+..+. + +.++.|++++.- --.++..++.++.|.||+||.+.+..+..+=
T Consensus 108 Vtacdia~vP--L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf----------------- 163 (219)
T PF05148_consen 108 VTACDIANVP--L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF----------------- 163 (219)
T ss_dssp EEES-TTS-S---------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG------------------
T ss_pred EEEecCccCc--C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC-----------------
Confidence 5667876552 1 158999998764 3457899999999999999999998776321
Q ss_pred HHHHHHHHHHhhcCCCeeEE
Q 026461 204 RQAILDLNRSLADDPRVQLS 223 (238)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~~~ 223 (238)
..++.|.+.+..- +|...
T Consensus 164 -~~~~~F~~~~~~~-GF~~~ 181 (219)
T PF05148_consen 164 -ENVKQFIKALKKL-GFKLK 181 (219)
T ss_dssp -S-HHHHHHHHHCT-TEEEE
T ss_pred -cCHHHHHHHHHHC-CCeEE
Confidence 1277888777654 45443
No 242
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.02 E-value=2.5e-05 Score=66.36 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=74.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
-...+|+|.|.|..+..++..+| +|-+++.+...+..+..++. .| |+.+-+|..+.. ++-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence 36899999999999999999777 68999999888888887764 33 777888876653 34468
Q ss_pred EEEc-----CCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 151 AFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 151 V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
||+- -.-++...++++|++.|+|||.|++-+...
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 8864 234556789999999999998777655543
No 243
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=0.00012 Score=61.17 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=72.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..+....+|+.-|.|+.+..+++.+++.++++++|.++.+++.|++.+...+ +++.+++++..++...+... ..++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~ 96 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK 96 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence 4456899999999999999999999888999999999999999999987765 78999999887765555322 2569
Q ss_pred eeEEEEcCCc
Q 026461 148 FDYAFVDADK 157 (238)
Q Consensus 148 fD~V~~d~~~ 157 (238)
+|-|++|.+.
T Consensus 97 vDGiL~DLGV 106 (314)
T COG0275 97 VDGILLDLGV 106 (314)
T ss_pred eeEEEEeccC
Confidence 9999998543
No 244
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.98 E-value=3.7e-05 Score=64.43 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=66.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...|.+|||+|||.|..+....+.++.-.+++++|.|+.+.+.++..+............ .. ..... ....+
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~---~~~~~----~~~~~ 102 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RV---LYRDF----LPFPP 102 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hh---hhccc----ccCCC
Confidence 357889999999999888777777775678999999999999999877654321111111 11 11110 01234
Q ss_pred eeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEEec
Q 026461 148 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.|+|++... ......+++.++..+++ -+|+++.
T Consensus 103 ~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEp 140 (274)
T PF09243_consen 103 DDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEP 140 (274)
T ss_pred CcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcC
Confidence 599987642 23345677777777766 4444443
No 245
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.97 E-value=3.9e-05 Score=64.81 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 137 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~ 137 (238)
..+++..|. ..++..++|+..|.|+.+..+++.+++ ++|+|+|.++++++.+++.+... .+++.+++++..++...
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHH
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHH
Confidence 344555444 456779999999999999999999985 99999999999999999877644 57899999988776554
Q ss_pred HHhcccCCCCeeEEEEcCCcc
Q 026461 138 LLKYSENEGSFDYAFVDADKD 158 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~~~~ 158 (238)
+... ....++|-|++|.+.+
T Consensus 85 l~~~-~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 85 LKEL-NGINKVDGILFDLGVS 104 (310)
T ss_dssp HHHT-TTTS-EEEEEEE-S--
T ss_pred HHHc-cCCCccCEEEEccccC
Confidence 4322 1246999999996544
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00015 Score=57.01 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=84.0
Q ss_pred CcHhHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 54 TAPDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 54 ~~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
-+.-.+.++.-|- ...+..+||=+|+.+|....+++...+ .+.+.++|.++......-..+.+ .+|+--+.+|+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA 133 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDA 133 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeeccc
Confidence 3444555555553 356778999999999999999999988 89999999999876655544443 34577788888
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccch-HHHHHHHHhccCCCeEEEE
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~~-~~~~~~~~~~L~~gG~lv~ 179 (238)
.....-.. --+..|+|+.|-..++. .-+..++...|++||.+++
T Consensus 134 ~~P~~Y~~----~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 134 RKPEKYRH----LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred CCcHHhhh----hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 65322111 14689999999655444 4455677789999995554
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00011 Score=55.69 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=75.5
Q ss_pred cCcHhHHHHHHHHHh---hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEE
Q 026461 53 GTAPDAGQLMAMLLR---LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINF 126 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~---~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~ 126 (238)
++.|..+.+....++ ...+++|||+|.| +|..++.+|...+ ...|...|-+++.++..++....+-.+ .++..
T Consensus 9 ciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~v 87 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCV 87 (201)
T ss_pred EecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehh
Confidence 445544444444333 2345789999998 7778888888776 788999999999999998877554222 11211
Q ss_pred EecchhHHHHHHHhcccCCCCeeEEEEc-CC--ccchHHHHHHHHhccCCCeEEEE
Q 026461 127 IESEALSVLDQLLKYSENEGSFDYAFVD-AD--KDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d-~~--~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+.-+... ....+ ....||+|+.. +. .+......+.+..+|+|.|.-++
T Consensus 88 lrw~~~~--aqsq~---eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 88 LRWLIWG--AQSQQ---EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred hHHHHhh--hHHHH---hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 1111111 11111 14699999864 31 33446677888899999887544
No 248
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.82 E-value=0.00017 Score=67.83 Aligned_cols=104 Identities=20% Similarity=0.149 Sum_probs=72.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchhHHHH--------------HHHHHH-----cC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIG--------------LPIIKK-----AG 119 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~-------~~----~~~v~~iD~~~~~~~~a--------------~~~~~~-----~~ 119 (238)
..-+|+|+|-|+|++.+...+.+ ++ .-+++++|..|-..+.. ++.+.. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999887766554 21 35899999866322222 222222 12
Q ss_pred C------CC--cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc------chHHHHHHHHhccCCCeEEEE
Q 026461 120 V------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 120 ~------~~--~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~------~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+ .. .+++..+|+.+.++.+ ...+|++|+|+..+ ...++|..+.+++++||+++-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1 12 3457889999999887 46799999996321 236889999999999999885
No 249
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.79 E-value=0.0034 Score=51.06 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=63.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
..+++||=+|=.--.+....+... ..+|+.+|+++..++..++..++.|+. ++..+.|..+.+|.-. .++|
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~--~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGL--PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKF 113 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-B
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCC--CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCC
Confidence 367899999976655543333333 479999999999999999999999984 9999999999877521 5899
Q ss_pred eEEEEcCC--ccchHHHHHHHHhccCCCe-EEEE
Q 026461 149 DYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY 179 (238)
Q Consensus 149 D~V~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~ 179 (238)
|++|.|.+ .+...-|+......|+..| ...+
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 99999974 4556778888888888766 4443
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.0017 Score=52.57 Aligned_cols=147 Identities=18% Similarity=0.105 Sum_probs=95.5
Q ss_pred CcHhHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEE-EEec
Q 026461 54 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIES 129 (238)
Q Consensus 54 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~-~~~~ 129 (238)
+++..-++...+-. ..+++.+||||+.+|++|-.+++.- ..+|+++|..-..+.+--+ .+.|+. +...
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR------~d~rV~~~E~t 131 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLR------NDPRVIVLERT 131 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHh------cCCcEEEEecC
Confidence 45555556555543 3467899999999999999999852 4799999997654433221 134554 4556
Q ss_pred chhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE--e--------ccccCccccCCCCCCCCCc
Q 026461 130 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY--D--------NTLWGGTVAVPEEQVPDHF 199 (238)
Q Consensus 130 d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~--~--------~~~~~g~~~~~~~~~~~~~ 199 (238)
|+..+-+... .+..|++++|-.--.....+..+..++++++.++. . .+--.|.+.++..
T Consensus 132 N~r~l~~~~~-----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~------ 200 (245)
T COG1189 132 NVRYLTPEDF-----TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKL------ 200 (245)
T ss_pred ChhhCCHHHc-----ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcch------
Confidence 6666533321 45899999997766777888888999999886665 1 1112333333322
Q ss_pred ccchHHHHHHHHHHhhcCCCeeEE
Q 026461 200 RGSSRQAILDLNRSLADDPRVQLS 223 (238)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~~~ 223 (238)
....+..+.++..+. +|++.
T Consensus 201 ---~~~v~~~i~~~~~~~-g~~~~ 220 (245)
T COG1189 201 ---HAEVLSKIENFAKEL-GFQVK 220 (245)
T ss_pred ---HHHHHHHHHHHHhhc-CcEEe
Confidence 344566666777666 66654
No 251
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=0.00024 Score=60.63 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=62.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+..++|||||++|++|..+++. +.+|++||..+-. ..+.. .++|+.+.+|.....+. .+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence 46779999999999999999985 5699999965421 11222 35799999998777542 4789
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCC
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVG 174 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~g 174 (238)
|++++|... ......+.+.+.|..|
T Consensus 272 DwvVcDmve-~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 272 DWLVCDMVE-KPARVAELMAQWLVNG 296 (357)
T ss_pred CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence 999999643 3345556666677665
No 252
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.73 E-value=0.00035 Score=51.72 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=67.7
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH-HHHHHhcccCC-CCeeEE
Q 026461 74 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENE-GSFDYA 151 (238)
Q Consensus 74 vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-l~~~~~~~~~~-~~fD~V 151 (238)
++|+|||+|..+ .++...+....++++|+++.++..++..... .....+.+..++.... ++- .. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence 999999999987 4444333124899999999988885544432 2111167777776542 221 12 379999
Q ss_pred EEcCCccc--hHHHHHHHHhccCCCeEEEEeccccC
Q 026461 152 FVDADKDN--YCNYHERLMKLLKVGGIAVYDNTLWG 185 (238)
Q Consensus 152 ~~d~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (238)
........ ....+..+.+.++++|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 43322111 46788888999999999888766543
No 253
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00056 Score=58.62 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=84.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
+.+|+|.=+|+|.=++.++...+ ..+|+.=|++|++++.+++|+..+... ....++.|+...+-+. ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence 88999999999999999998876 349999999999999999999987433 3566668988887765 589999
Q ss_pred EEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 151 AFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 151 V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|=+|.. ....+|++.+.+.++.||++.+-
T Consensus 125 IDiDPF-GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 125 IDIDPF-GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred EecCCC-CCCchHHHHHHHHhhcCCEEEEE
Confidence 988852 34578889999999999999983
No 254
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.68 E-value=5.1e-05 Score=60.81 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=74.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
...++||||+.|+...++.... -.+++.+|.|-.+++.++..-. .+ -.+...++|- +.++ +.+.++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DE-E~Ld------f~ens~DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDE-EFLD------FKENSVDL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cc--eEEEEEecch-hccc------ccccchhh
Confidence 4579999999999998887642 4689999999999998876421 11 2345566663 4444 23689999
Q ss_pred EEEc---CCccchHHHHHHHHhccCCCeEEEEe
Q 026461 151 AFVD---ADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 151 V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+.. +|..+.+..+..+...|||+|.++..
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 9876 57778888999999999999998863
No 255
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.68 E-value=0.00025 Score=57.86 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 137 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~ 137 (238)
.-.++..+-.......|.|+|||-+..+. ....+|+++|+.+- +-+++.+|+..+.-
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a~----------------~~~V~~cDm~~vPl- 224 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVAV----------------NERVIACDMRNVPL- 224 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh------ccccceeeeeeecC----------------CCceeeccccCCcC-
Confidence 34566777666677789999999988754 12468999998532 24667788877421
Q ss_pred HHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 138 LLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.+++.|+++... --.++..++.++.+.|++||.+.+..+.
T Consensus 225 ------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 ------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred ------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 168999988653 3457889999999999999999987765
No 256
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.67 E-value=8.8e-05 Score=62.38 Aligned_cols=81 Identities=12% Similarity=0.297 Sum_probs=48.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEEecchh-HHHHHHHhcccCCCCee
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFD 149 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~-~~l~~~~~~~~~~~~fD 149 (238)
-++||||||....=-.|+.... +=+++|.|+++..++.|++++..+ ++.++|+++..... .++..+.. ..+.||
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence 4799999976543222332222 568999999999999999999999 99999998755322 23332221 146899
Q ss_pred EEEEcCC
Q 026461 150 YAFVDAD 156 (238)
Q Consensus 150 ~V~~d~~ 156 (238)
+..++.+
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 9998754
No 257
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00015 Score=56.75 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=58.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..+.++|||.|+|+|..++..+..- ...|+..|++|-....++-|.+.++. .+.+...|..- ++..
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g----------~~~~ 142 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG----------SPPA 142 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC----------CCcc
Confidence 4567899999999999998877753 47899999999999989989888875 37777766533 1689
Q ss_pred eeEEEEc
Q 026461 148 FDYAFVD 154 (238)
Q Consensus 148 fD~V~~d 154 (238)
||+|+..
T Consensus 143 ~Dl~Lag 149 (218)
T COG3897 143 FDLLLAG 149 (218)
T ss_pred eeEEEee
Confidence 9999875
No 258
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.63 E-value=0.00071 Score=55.95 Aligned_cols=167 Identities=11% Similarity=0.107 Sum_probs=87.1
Q ss_pred CCCcHHHHHHHHhccCCCCCChHHHHHHHHHhcCCCCCccCcHhHHHHHHHHHh----hcCCCEEEEEccc--ccHHHHH
Q 026461 14 LLQSEDLYRYILETSVYPREPEPLKKIRDVTADHPWAMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVF--TGYSLLL 87 (238)
Q Consensus 14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G--~G~~t~~ 87 (238)
....-++++|+.-.. ...+.=+++-+...+.--.........-.+|...++ ...-.+.|||||| +-.++-.
T Consensus 11 ~P~~ARvYDy~LGGk---dnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHe 87 (267)
T PF04672_consen 11 RPSPARVYDYLLGGK---DNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHE 87 (267)
T ss_dssp S--HHHHHHHHCT-S---S--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHH
T ss_pred CCcHHHHHHHHhCCc---cCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhH
Confidence 344568999988522 111211222222111111112233334444444333 3355689999999 3446677
Q ss_pred HHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH---hc--ccCCCCeeEEEEcC-----Cc
Q 026461 88 TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---KY--SENEGSFDYAFVDA-----DK 157 (238)
Q Consensus 88 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~---~~--~~~~~~fD~V~~d~-----~~ 157 (238)
+++...++++|+-+|.+|-.+..++..+....- .+..++++|..+.-.-+. .. -+-..+.-++++.- +.
T Consensus 88 vAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~ 166 (267)
T PF04672_consen 88 VAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDD 166 (267)
T ss_dssp HHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CG
T ss_pred HHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCc
Confidence 887776799999999999999999998876532 348899999876433221 11 01133444555431 23
Q ss_pred cchHHHHHHHHhccCCCeEEEEecccc
Q 026461 158 DNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 158 ~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
......+..+...|.||.+|++.....
T Consensus 167 ~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 167 DDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp CTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred cCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 456788899999999999999987654
No 259
>PHA01634 hypothetical protein
Probab=97.60 E-value=0.00021 Score=52.03 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=56.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
...++|+|||.+.|-++++++..- ..+|+++|.++...+..+++++.+++-++..... ++ +. .-++|
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW-~~------~Y~~~ 93 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EW-NG------EYEDV 93 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cc-cc------cCCCc
Confidence 367899999999999999999753 4789999999999999999887765433222211 12 21 15899
Q ss_pred eEEEEcCC
Q 026461 149 DYAFVDAD 156 (238)
Q Consensus 149 D~V~~d~~ 156 (238)
|+..+|+.
T Consensus 94 Di~~iDCe 101 (156)
T PHA01634 94 DIFVMDCE 101 (156)
T ss_pred ceEEEEcc
Confidence 99999963
No 260
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00015 Score=64.13 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=87.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
....+|-+|-|.|....++...+| ..++++++++|++++.|.+++....- .+..+...|..+.+............||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 456789999999999999988887 78999999999999999999855432 3566677788888777765433467899
Q ss_pred EEEEcCCc--c--------c--hHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 150 YAFVDADK--D--------N--YCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 150 ~V~~d~~~--~--------~--~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
++++|-+- . . ...++..+...|.|.|+++++-+....
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 99997321 1 1 134566667889999999998766543
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.57 E-value=6.3e-05 Score=66.74 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=57.9
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
-+.+||||||.|.++.+|.+. +..++++-.....-.+.+ .+...|+..-+.++ +..-+| +....||+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvq-faleRGvpa~~~~~---~s~rLP------fp~~~fDm 184 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQ-FALERGVPAMIGVL---GSQRLP------FPSNAFDM 184 (506)
T ss_pred eEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhh-hhhhcCcchhhhhh---cccccc------CCccchhh
Confidence 347899999999999999974 334444444322211111 11122543322211 122333 34789999
Q ss_pred EEEcC----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 151 AFVDA----DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 151 V~~d~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|.+.. +...---++-++-+.|+|||+++.+..-
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 98753 2222233556677999999999976543
No 262
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.52 E-value=4.5e-05 Score=62.88 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=68.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC---------------------------C
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---------------------------H 122 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---------------------------~ 122 (238)
++.++||||||+-..- ++.+.+...+|++.|..+...+..+++++..+.- .
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4568999999874442 3333333458999999999999888887654310 1
Q ss_pred cEE-EEecchhHHHHHHHhcccCCCCeeEEEEc-------CCccchHHHHHHHHhccCCCeEEEEeccccCccc
Q 026461 123 KIN-FIESEALSVLDQLLKYSENEGSFDYAFVD-------ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 188 (238)
Q Consensus 123 ~v~-~~~~d~~~~l~~~~~~~~~~~~fD~V~~d-------~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 188 (238)
.|+ ++.+|..+.-+-.... ..+.+||+|+.- .....|...++.+.++|||||.+++..++-...+
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~-~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y 206 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPV-VLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYY 206 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS--SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEE
T ss_pred hhceEEEeeccCCCCCCccc-cCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeE
Confidence 122 4445544321110000 012359999764 2455677888888999999999999887754433
No 263
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.44 E-value=0.0015 Score=55.09 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=79.2
Q ss_pred CcHhHHHHHHHHH---------hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc
Q 026461 54 TAPDAGQLMAMLL---------RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK 123 (238)
Q Consensus 54 ~~~~~~~~l~~l~---------~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~ 123 (238)
++-+.+.++..|. ......+||-+|+| .|..+...|+++. ..+|+.+|+++..++.|++ + |...-
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~ 218 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVT 218 (354)
T ss_pred CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEE
Confidence 4445555655542 24456799999999 6889999999987 8999999999999999998 3 65321
Q ss_pred EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
......+..+.+.+..++......+|+.|--. .....++.....+++||++++-.
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred eeccccccHHHHHHHHHhhccccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence 12222221222222222212234599988543 44566677788999999977754
No 264
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.43 E-value=0.00024 Score=61.61 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=83.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++..++++|||.|....+++..- ..++++++.++..+..+.......++.++..++.++..+. ++++..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-------~fedn~ 178 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-------PFEDNT 178 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-------CCCccc
Confidence 4455679999999999999998753 5789999999998888888888878877777766665443 234689
Q ss_pred eeEEEE-cC--CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 148 FDYAFV-DA--DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 148 fD~V~~-d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
||.+.+ +. ..+.....++++++.++|||+.+...+.
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 999964 43 3456678889999999999999986554
No 265
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00018 Score=63.56 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=93.3
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461 63 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 142 (238)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 142 (238)
..+....++-+|||.=+++|.-++..+..++.-.+|++-|.++..++..+.|++.++..+.++..+.|+.-.+-...
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~--- 178 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP--- 178 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc---
Confidence 33445566779999999999999999999986688999999999999999999999888888888999876544331
Q ss_pred cCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.....||+|=+|.. .....|++.+.+.++.||+|++-
T Consensus 179 ~~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 179 MVAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEE
Confidence 11378999999853 24467889999999999999983
No 266
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.30 E-value=0.0022 Score=53.39 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---C----------------------------
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---G---------------------------- 119 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~---------------------------- 119 (238)
+.+||-=|||.|..+..+|.. +-.+.+.|.|-.|+-..+-.+... +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 468999999999999999985 578999999987755444333210 0
Q ss_pred --------CCCcEEEEecchhHHHHHHHhcccCCCCeeEEE----EcCCccchHHHHHHHHhccCCCeEEEEec-cccCc
Q 026461 120 --------VDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDN-TLWGG 186 (238)
Q Consensus 120 --------~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~----~d~~~~~~~~~~~~~~~~L~~gG~lv~~~-~~~~g 186 (238)
...++.+..||..+.-..- ...++||.|+ +| ..++..++++.+.++|||||+.|=-. ++|+-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFID-TAENIIEYIETIEHLLKPGGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEee-chHHHHHHHHHHHHHhccCCEEEecCCccccC
Confidence 0124555666655542211 0137999884 44 45678999999999999999655333 34433
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0039 Score=53.53 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=78.5
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHH-hc
Q 026461 66 LRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL-KY 141 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~-~~ 141 (238)
+...+..+|||.++..|.-|+.+++.+- ..+.|++=|.++..+......+...+. .++.+...++........ ..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 3456778999999999999999998764 136899999999988888877755443 334444444432211110 00
Q ss_pred -ccCCCCeeEEEEcCCccc------h--------------------HHHHHHHHhccCCCeEEEEecccc
Q 026461 142 -SENEGSFDYAFVDADKDN------Y--------------------CNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 142 -~~~~~~fD~V~~d~~~~~------~--------------------~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
+.....||-|++|.++.. . ..++...+++|++||.+|-+.+..
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 012468999999853211 1 234455568999999999876653
No 268
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.25 E-value=0.00024 Score=57.62 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=48.6
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---CC-----CCcEEEEecchhHHHHHHHhccc
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
.+|||+.+|-|.-++-++.. +++|+++|-+|-.....+.-+..+ .- ..+++++++|+.++++..
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~----- 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP----- 148 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH-----
T ss_pred CEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc-----
Confidence 38999999999999998864 568999999997766665444332 11 147999999999988722
Q ss_pred CCCCeeEEEEcC
Q 026461 144 NEGSFDYAFVDA 155 (238)
Q Consensus 144 ~~~~fD~V~~d~ 155 (238)
..+||+|++|.
T Consensus 149 -~~s~DVVY~DP 159 (234)
T PF04445_consen 149 -DNSFDVVYFDP 159 (234)
T ss_dssp -SS--SEEEE--
T ss_pred -CCCCCEEEECC
Confidence 58999999995
No 269
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.25 E-value=0.002 Score=52.71 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461 57 DAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135 (238)
Q Consensus 57 ~~~~~l~~l~~~-~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 135 (238)
....+...+... ..+.+|+|||||.--.++.+.... ++..++++|++...++.....+...+.. .++...|.....
T Consensus 91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 344555555443 448899999998888887766543 3789999999999999999999998865 455555654432
Q ss_pred HHHHhcccCCCCeeEEEEcC
Q 026461 136 DQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~ 155 (238)
+ ....|+.++--
T Consensus 168 ~--------~~~~DlaLllK 179 (251)
T PF07091_consen 168 P--------KEPADLALLLK 179 (251)
T ss_dssp T--------TSEESEEEEET
T ss_pred C--------CCCcchhhHHH
Confidence 2 57899998764
No 270
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.24 E-value=0.0027 Score=51.42 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=73.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
+.+..+||-+|+++|.+-.+.+....+++-|+++|.++..-...-....+ ..+|--+..|+...-+-.. .-+-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYRm----lVgm 226 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYRM----LVGM 226 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---cCCceeeeccCCCchheee----eeee
Confidence 56778999999999999999999998899999999998653333222211 2456666677765322111 1357
Q ss_pred eeEEEEcCCccchHHHHH-HHHhccCCCeEEEEe
Q 026461 148 FDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYD 180 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~ 180 (238)
.|+||.|-.+++....+. ++...|++||.+++.
T Consensus 227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 899999976665544432 334689999988874
No 271
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00033 Score=59.55 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=68.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...|++|||+|.|.|.....+-..+|.-..++.+|.++..-+........... .....-..|...-.-.+ +....
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~l----p~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSL----PAADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCC----Cccce
Confidence 34678999999999998877777777667788899888655554443333222 12222333332221122 12467
Q ss_pred eeEEEEcC------CccchHHHHHHHHhccCCCeEEEEe
Q 026461 148 FDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 148 fD~V~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+++++-. .......+++.+|.++.|||.+|+-
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 88887642 2233455889999999999988874
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.10 E-value=0.006 Score=52.33 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=69.8
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+.++|+-+|+| .|..++.+|.++. .+|+++|.+++..+.|++. |. -.++.....+..+.. .+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~~ 228 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------KE 228 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------Hh
Confidence 4567789888887 5557788888774 8999999999999988875 42 234443323444444 24
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.||+|+.-.. ...++...+.|++||.+++-...
T Consensus 229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 5999997654 55667778899999999986655
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0038 Score=46.80 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=82.7
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
.....+.+|+ ++..++..+.+|+|+|.|..-+..++.. --.-+|+|++|-.+.+++-..-+.|.....+|..-|..+
T Consensus 57 tteQv~nVLS-ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 57 TTEQVENVLS-LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred cHHHHHHHHH-HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 3444455554 3444566789999999999988888753 235799999999999998888888888888888776654
Q ss_pred HHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 134 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 134 ~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
. . -..|..|++-+..+-++.....+..-+..+..++.-
T Consensus 134 ~--d-------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 134 V--D-------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred c--c-------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 4 2 356666766665556666666666677777777754
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.01 E-value=0.011 Score=51.29 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=70.8
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhcccCCCC
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS 147 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~~~~~ 147 (238)
...+|+-+||| .|..+..+++.+. ..+|+.+|.+++.++.|++.... ..+..... +......... ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence 34489999999 5778888888876 78999999999999999985421 11222212 2222222221 1237
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+|++|--.. ....+..+.+.+++||.+++-.+.
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 999997654 566788889999999999986555
No 275
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0015 Score=57.20 Aligned_cols=59 Identities=24% Similarity=0.354 Sum_probs=51.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
.|||||+|+|..++..+.+.. -.|+++|.-..+.+.|++...++|++++|+++.-...+
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 589999999999998888753 56999999999999999999999999999988655443
No 276
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0022 Score=50.29 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=65.7
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhH------HHHHHHHHHcCCCCcEEEEecchhHHHHHHH
Q 026461 66 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY------EIGLPIIKKAGVDHKINFIESEALSVLDQLL 139 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~------~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~ 139 (238)
....+..+|+|+-.|.|++|..|+....+.+.|+++-..+... ...+....+... .+++.+-.+.....
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~---- 118 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG---- 118 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC----
Confidence 3466778999999999999999999998899999887654311 111111111111 22333322211111
Q ss_pred hcccCCCCeeEEEEcC----------CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 140 KYSENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 140 ~~~~~~~~fD~V~~d~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.....|+++... ...........+.+.|||||++++.|..
T Consensus 119 ----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 119 ----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 145666665421 1222356778888999999988876643
No 277
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.016 Score=45.26 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=64.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhH------HHHHHHhc
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS------VLDQLLKY 141 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~------~l~~~~~~ 141 (238)
.+..+|||+||..|.++.-..+...|.+.|.|||+-.-. .. ..++++.+ |..+ +.+.+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~-~Ga~~i~~~dvtdp~~~~ki~e~l--- 132 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PP-EGATIIQGNDVTDPETYRKIFEAL--- 132 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CC-CCcccccccccCCHHHHHHHHHhC---
Confidence 456799999999999998888888679999999985321 11 12455544 3322 22333
Q ss_pred ccCCCCeeEEEEcCCcc-------chHHHHH-------HHHhccCCCeEEEEeccccCc
Q 026461 142 SENEGSFDYAFVDADKD-------NYCNYHE-------RLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~~~-------~~~~~~~-------~~~~~L~~gG~lv~~~~~~~g 186 (238)
+..+.|+|+.|..+. +....++ .....++|+|.+++. +|.|
T Consensus 133 --p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 133 --PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred --CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 257999999984321 1122222 234678899999985 4555
No 278
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.83 E-value=0.0045 Score=45.33 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=63.2
Q ss_pred cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccc
Q 026461 80 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 159 (238)
Q Consensus 80 G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~ 159 (238)
|.|..++.+|+... .+|+++|.++...+.+++. |...-+.....|..+.+..+. +...+|+||-...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----ccccccccccccccccccccc----ccccceEEEEecC---
Confidence 46889999999875 8999999999988877653 532212222333444444442 1248999986543
Q ss_pred hHHHHHHHHhccCCCeEEEEeccc
Q 026461 160 YCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 160 ~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
....++....+|+++|.+++-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 367888889999999999986554
No 279
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.80 E-value=0.073 Score=42.60 Aligned_cols=108 Identities=13% Similarity=0.118 Sum_probs=65.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHc------------------------------
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA------------------------------ 118 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~------------------------------ 118 (238)
.|-.+.|-+||+|+...-+.--.++ -..|.+-|+++++++.|++|+...
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4568999999999987766654432 268999999999999999988521
Q ss_pred -----------CCCCcEEEEecchhHHH--HHHHhcccCCCCeeEEEEcCC-------cc-----chHHHHHHHHhccCC
Q 026461 119 -----------GVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDAD-------KD-----NYCNYHERLMKLLKV 173 (238)
Q Consensus 119 -----------~~~~~v~~~~~d~~~~l--~~~~~~~~~~~~fD~V~~d~~-------~~-----~~~~~~~~~~~~L~~ 173 (238)
|-.....+...|+.+.- .... .....|+|+-|-+ .. ....++..+.+.|..
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~----~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~ 206 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD----AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH----TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc----cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence 11122567777776632 2221 1345799999832 11 246789999999977
Q ss_pred CeEEEEec
Q 026461 174 GGIAVYDN 181 (238)
Q Consensus 174 gG~lv~~~ 181 (238)
++++++.|
T Consensus 207 ~sVV~v~~ 214 (246)
T PF11599_consen 207 RSVVAVSD 214 (246)
T ss_dssp T-EEEEEE
T ss_pred CcEEEEec
Confidence 88888843
No 280
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.79 E-value=0.018 Score=52.28 Aligned_cols=136 Identities=20% Similarity=0.267 Sum_probs=95.9
Q ss_pred CCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE
Q 026461 50 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINF 126 (238)
Q Consensus 50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (238)
+..-.++.+.+++..++...+..+|.|-.||+|......+..+.. ...+.|.|+++.....++.++--+|....+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 555567888899998887756668999999999988887776642 26799999999999999999988887644566
Q ss_pred EecchhHHHHHHHhcccCCCCeeEEEEcCCcc----------------------------chHHHHHHHHhccCCCe---
Q 026461 127 IESEALSVLDQLLKYSENEGSFDYAFVDADKD----------------------------NYCNYHERLMKLLKVGG--- 175 (238)
Q Consensus 127 ~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~----------------------------~~~~~~~~~~~~L~~gG--- 175 (238)
..+|...-..... .+..+.||+|+.+.+-. ....++..+...|+|||
T Consensus 246 ~~~dtl~~~~~~~--~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 246 RHGDTLSNPKHDD--KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccCCcccc--cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 6666544321100 01247899887653210 01356777788999865
Q ss_pred EEEEeccccCcc
Q 026461 176 IAVYDNTLWGGT 187 (238)
Q Consensus 176 ~lv~~~~~~~g~ 187 (238)
+++.++++++|.
T Consensus 324 ivl~~gvlfr~~ 335 (489)
T COG0286 324 IVLPDGVLFRGG 335 (489)
T ss_pred EEecCCcCcCCC
Confidence 666677777664
No 281
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.65 E-value=0.027 Score=42.28 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeE
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
+.-|||+|-|.|..=-+|-+.+| +-+|+.+|..-.+-.. ...+.-.++.||+.+.++.+..- ..+.-+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~--------~~P~~~~~ilGdi~~tl~~~~~~---g~~a~l 96 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPS--------STPPEEDLILGDIRETLPALARF---GAGAAL 96 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GG--------G---GGGEEES-HHHHHHHHHHH----S-EEE
T ss_pred CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCC--------CCCchHheeeccHHHHhHHHHhc---CCceEE
Confidence 35799999999999999999998 8899999974221110 11123468999999988873322 455666
Q ss_pred EEEcCCccchH---HHH----HHHHhccCCCeEEEEeccc
Q 026461 151 AFVDADKDNYC---NYH----ERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 151 V~~d~~~~~~~---~~~----~~~~~~L~~gG~lv~~~~~ 183 (238)
+..|....... .+. ..+.++|.|||++|-+.-+
T Consensus 97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl 136 (160)
T PF12692_consen 97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPL 136 (160)
T ss_dssp EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 66664322221 111 2234789999999987655
No 282
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.084 Score=43.20 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=78.9
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461 65 LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 141 (238)
Q Consensus 65 l~~~~~~~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 141 (238)
++....+...+|+|+|+-.-|..+...+.. -.+++.||++...+....+.+......-.+.-+.+|-...+..+.
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-- 150 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-- 150 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--
Confidence 344667899999999999999999988753 268999999999886555444443333346667888766666652
Q ss_pred ccCCCCeeEEEEcCC-----ccchHHHHHHHHhccCCCeEEEE
Q 026461 142 SENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
..+.-=++|+... +.....++..+...++||-.+++
T Consensus 151 --~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 151 --RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred --CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 1334445555432 44457789999999999998877
No 283
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.32 E-value=0.0097 Score=53.19 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=61.5
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...-++|+|..+|.|+++..|.+. . |+..-..|..-...-..+-..|+ +-..+ |-.+.++.. +.+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~---~--VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsTY------PRT 427 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD---P--VWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFSTY------PRT 427 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC---C--ceEEEecccCCCCcchhhhhccc---chhcc-chhhccCCC------Ccc
Confidence 334568999999999999988753 2 43333333221111122222243 22222 555655555 689
Q ss_pred eeEEEEcCCc------cchHHHHHHHHhccCCCeEEEEeccc
Q 026461 148 FDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 148 fD~V~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
||+|..++-. -.....+-++=+.|+|||.+++.|-.
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 9999887432 23455666666999999999997644
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.26 E-value=0.031 Score=48.14 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=60.0
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
+..+||-+|+| .|..++.++.... ..+|+++|.+++..+.+++ .|...-+.....+..+... . .+.+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~----~---~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA----E---KGYF 236 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc----c---CCCC
Confidence 46789888875 4555666777653 3479999999988887765 3532111111112212111 1 2469
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
|+||-... ....+....++|++||.++.-..
T Consensus 237 D~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSG---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 99885432 23456677889999999887543
No 285
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.21 E-value=0.024 Score=47.53 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=63.7
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~ 152 (238)
+++|+.||.|..+..+...- -..+.++|+++.+++..+.|+.. .++.+|+.++.+.- ..+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~-----~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD-----FIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh-----cCCCCCEEE
Confidence 58999999999988887642 34689999999999988887632 15667776654321 035799999
Q ss_pred EcCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461 153 VDADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 153 ~d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.+.++.. +..+++. .+.++| -+++++|+.
T Consensus 68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~-i~~~~P-~~~v~ENV~ 113 (275)
T cd00315 68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIRI-LKEKKP-KYFLLENVK 113 (275)
T ss_pred eCCCChhhhHHhhcCCCCCchHHHHHHHHHH-HHhcCC-CEEEEEcCc
Confidence 8743322 1223332 345577 478888874
No 286
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.20 E-value=0.05 Score=44.71 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc-----CCCCcEEEEe---cchhHHHHHHHhc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----GVDHKINFIE---SEALSVLDQLLKY 141 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~~~~~v~~~~---~d~~~~l~~~~~~ 141 (238)
.+.+|||+|+|+|..++..+... ..+|+..|.. ..++....+.... .+...+.+.. +++.+. ...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~--- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFR--- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhc---
Confidence 46789999999999888888754 5788888874 3344343332222 2222233222 222222 111
Q ss_pred ccCCCC-eeEEEEcC---CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 142 SENEGS-FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 142 ~~~~~~-fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.+. +|+|+... ..+.+...+..+..+|..+|++.+..-+
T Consensus 159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 233 89998643 2455677777888888888866655433
No 287
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.12 E-value=0.0054 Score=50.91 Aligned_cols=106 Identities=22% Similarity=0.163 Sum_probs=73.5
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
....|.+.+++.... ....++|+|||.|-.+. ..+...++++|++...+.-+++- | -.....+|+
T Consensus 30 ~~~Wp~v~qfl~~~~---~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~ 94 (293)
T KOG1331|consen 30 AAPWPMVRQFLDSQP---TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADA 94 (293)
T ss_pred cCccHHHHHHHhccC---CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---Cceeehhhh
Confidence 334566666666543 46789999999998732 22367899999998888777642 2 125677777
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCCccc------hHHHHHHHHhccCCCeEEEE
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~~~~------~~~~~~~~~~~L~~gG~lv~ 179 (238)
..... ...+||..+.-+..++ -...++++.+.|+|||-..+
T Consensus 95 l~~p~-------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 95 LKLPF-------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hcCCC-------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 66532 3689999987654433 35678889999999997554
No 288
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.10 E-value=0.071 Score=48.54 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=68.7
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEE--Eec-------------chh
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IES-------------EAL 132 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~-------------d~~ 132 (238)
.++.+|+-+|+| .|..++..|..+. .+|+++|.+++..+.+++. |.. .+.+ ... +..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhHH
Confidence 467899999999 5778888888875 5899999999998888763 421 0111 110 100
Q ss_pred HH-HHHHHhcccCCCCeeEEEEcCCccc--hHHH-HHHHHhccCCCeEEEEeccccCc
Q 026461 133 SV-LDQLLKYSENEGSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 133 ~~-l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
+. ...+.+. ...+|+|+--...+. .+.. .+...+.+||||+++.-.+..+|
T Consensus 236 ~~~~~~~~~~---~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 236 KAEMALFAEQ---AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHHHHhc---cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 10 1111110 257999997654322 2445 48888999999998875554444
No 289
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.05 E-value=0.0047 Score=51.60 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=70.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
....|+|+-+|.||+|+.+.-... ...|+++|.+|..++..+.+++.++...+..+..+|-+..-+ ....|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~Ad 264 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRAD 264 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccch
Confidence 446799999999999994443333 578999999999999999999998887777777777655422 45677
Q ss_pred EEEEcCCccchHHHHHHHHhccCCC-e-EEEEe
Q 026461 150 YAFVDADKDNYCNYHERLMKLLKVG-G-IAVYD 180 (238)
Q Consensus 150 ~V~~d~~~~~~~~~~~~~~~~L~~g-G-~lv~~ 180 (238)
-|.+..-++. ..-+..+.+.|+|. | ++=++
T Consensus 265 rVnLGLlPSs-e~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 265 RVNLGLLPSS-EQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred heeecccccc-ccchHHHHHHhhhcCCcEEEEe
Confidence 7776532222 22233445677774 4 44443
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.03 E-value=0.063 Score=47.13 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=68.1
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc-hhHHHHHHHhccc
Q 026461 66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSE 143 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~l~~~~~~~~ 143 (238)
....+..+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.. +. ..+.+...+ ..+.+..+.
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~---- 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT---- 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----
Confidence 3445667899999987 888889998875 357999999998888877652 21 112222221 222232321
Q ss_pred CCCCeeEEEEcCCc------------------cchHHHHHHHHhccCCCeEEEEec
Q 026461 144 NEGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 144 ~~~~fD~V~~d~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
....+|+|+-.... .+....+..+.+.++++|.++.-.
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 13479988753211 112456778889999999887643
No 291
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.03 E-value=0.013 Score=43.06 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=38.5
Q ss_pred cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc------cchHHHHHHHHhccCCCeEEEE
Q 026461 123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~------~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+++..+|+.+.++.+ ...+|+||.|+.- -...++++.+.+++++||+++.
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 3567899999999987 5899999999621 1237899999999999999885
No 292
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.83 E-value=0.4 Score=37.70 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=67.0
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHH------------HHHcCCCCcEEEEecchhHHHHHHH
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL 139 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~l~~~~ 139 (238)
+|--||. |+.++.+|..+.. +.+|+++|++++.++..++- +++..-..++.+.. |..+.+
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~-~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT-DIEEAI---- 74 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES-EHHHHH----
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh-hhhhhh----
Confidence 5666766 5555554444322 46999999999987766531 11111012333332 333322
Q ss_pred hcccCCCCeeEEEEcCC----------ccchHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 026461 140 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD 209 (238)
Q Consensus 140 ~~~~~~~~fD~V~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (238)
...|++|+.-+ ........+.+.+.++++.++++......|. ....++.
T Consensus 75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt---------------t~~~~~~ 133 (185)
T PF03721_consen 75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT---------------TEELLKP 133 (185)
T ss_dssp ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH---------------HHHHHHH
T ss_pred ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee---------------ehHhhhh
Confidence 35688887532 1224566777788999999999998887774 3323445
Q ss_pred HHHHhhcC-CCeeEEeee
Q 026461 210 LNRSLADD-PRVQLSHVA 226 (238)
Q Consensus 210 ~~~~l~~~-~~~~~~~lp 226 (238)
+.+..... .+|....-|
T Consensus 134 ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 134 ILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp HHHHHCCTTTCEEEEE--
T ss_pred hhhhhcccccCCeEEECC
Confidence 54443322 567777666
No 293
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.81 E-value=0.0017 Score=51.49 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=64.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
.+.++||+|+|.|-.|..++-.+. +|.+.|.|..+....++ .+ .+++. ..+++.. +-+||
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~----ynVl~--~~ew~~t-------~~k~d 171 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KN----YNVLT--EIEWLQT-------DVKLD 171 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cC----Cceee--ehhhhhc-------Cceee
Confidence 467999999999999999997654 68899998887766553 23 23332 2233222 46899
Q ss_pred EEEEcC---CccchHHHHHHHHhccCC-CeEEEEecccc
Q 026461 150 YAFVDA---DKDNYCNYHERLMKLLKV-GGIAVYDNTLW 184 (238)
Q Consensus 150 ~V~~d~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 184 (238)
+|.+-. .+-+.-..++.++..|+| .|.+++.-++.
T Consensus 172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 986532 123345667777888888 78777765553
No 294
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.024 Score=50.91 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=75.3
Q ss_pred EEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 73 KTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la---~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
.|+-+|.|-|-...... +...+..++++||-+|.++-..+. .......++|+++.+|.+++-+. ..+.|
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~eq~D 441 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------REQAD 441 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hhhcc
Confidence 57888999998765443 333446889999999999887765 44445668999999999887431 26889
Q ss_pred EEEEc-----CCccchHHHHHHHHhccCCCeEEEEe
Q 026461 150 YAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 150 ~V~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+++.. ++-+.-++.+..+.+.|||+|+-+-.
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 98753 34556689999999999999887643
No 295
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.68 E-value=0.49 Score=39.35 Aligned_cols=111 Identities=9% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCC--CCcEEEEecchhHHH-HHHHhcccCCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSVL-DQLLKYSENEG 146 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~l-~~~~~~~~~~~ 146 (238)
....|+.+|| |.-|..+--..+.+.+++-+|. |+.++.-++.+.+.+. ..+.+++..|..+.+ ..+...++...
T Consensus 81 g~~qvV~LGa--GlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 81 GIRQVVILGA--GLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CCcEEEEeCC--ccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3568999999 4555544333332345555555 5667777777776543 356888888886433 33332211111
Q ss_pred CeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 147 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 147 ~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
..=+++.-+ .......+++.+.....||+.|+++-+.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 222333333 2344567788887777799999998543
No 296
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.62 E-value=0.068 Score=38.25 Aligned_cols=88 Identities=20% Similarity=0.095 Sum_probs=58.4
Q ss_pred ccccHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCeeEEEEcC
Q 026461 79 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 79 ~G~G~~t~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~fD~V~~d~ 155 (238)
||.|..+..+++.+...+ .|+.+|.+++.++.+++. + +.++.||+.+ .+.... -...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~-----i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAG-----IEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTT-----GGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcC-----ccccCEEEEcc
Confidence 455788888888776555 899999999998877753 2 6789999876 344432 46889888875
Q ss_pred CccchHHHHHHHHhccCCCeEEEE
Q 026461 156 DKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 156 ~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
......-......+.+.|...+++
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEE
Confidence 433322233334466677766665
No 297
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.51 E-value=0.053 Score=43.81 Aligned_cols=94 Identities=14% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC----CC----CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh------HHH
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP----ED----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL------SVL 135 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~----~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~------~~l 135 (238)
.-++++|+++..|.++..+++.+- .. .+|++||+.+-+ .+.. |.-+++|+. .++
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHH
Confidence 356899999999999999888762 12 239999997642 3322 555666653 244
Q ss_pred HHHHhcccCCCCeeEEEEcCCc-----cchHHHH---------HHHHhccCCCeEEEEe
Q 026461 136 DQLLKYSENEGSFDYAFVDADK-----DNYCNYH---------ERLMKLLKVGGIAVYD 180 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~~-----~~~~~~~---------~~~~~~L~~gG~lv~~ 180 (238)
..+ ..++-|+|++|+.+ +++.+|+ ......|+|||.+|..
T Consensus 109 ~hf-----ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHF-----GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHh-----CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 444 46799999999642 3443333 2233689999999864
No 298
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.47 E-value=0.14 Score=44.71 Aligned_cols=102 Identities=24% Similarity=0.336 Sum_probs=60.3
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+..+||-.|+| .|..+..+++... ..+|+++|.+++..+.+++ .|...-+.....+..+.+..+. .+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~ 258 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GG 258 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CC
Confidence 3456788888875 3445556666543 2379999999988887764 3542112221222222233221 23
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.+|+||-... ....+....+.|+++|.++.-..
T Consensus 259 g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 259 GVDYAFEMAG---SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEcc
Confidence 7998884332 23456677889999998886443
No 299
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.47 E-value=0.18 Score=43.66 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=61.7
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+..+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++ .|...-+.....+..+.+.... ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence 4456789988875 3555566777653 2369999999888777754 3542212222223333333331 124
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.+|+|+--.. ....+....+.+++||.+++-..
T Consensus 245 g~d~vid~~g---~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAVG---RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECCC---CHHHHHHHHHHhccCCEEEEECC
Confidence 6898874322 13456667789999999887543
No 300
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.45 E-value=0.18 Score=42.80 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=61.8
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
...+.+||..|+| .|..++.+|... +.+|++++.+++..+.+++ .|....+.....+..+.+ ... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence 4456688888876 477778888875 4679999999887776654 354221111111222222 121 246
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+|+|+-... ....++.+.+.|+++|.++.-
T Consensus 232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 7998874322 245677788999999988864
No 301
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.45 E-value=0.056 Score=46.78 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 113 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~ 113 (238)
..+++..+......+.++|+|+|.|+.+..++-++ +..|.+||-+....+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 46677777777888899999999999999999765 5899999999776666653
No 302
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.29 E-value=0.022 Score=49.27 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=75.3
Q ss_pred ccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 52 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
+.++....-+...++...++.+|+|+.|..|..|.+++..+++.+++.++|.+++.++..++.+...|.+. ++...+|.
T Consensus 195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df 273 (413)
T KOG2360|consen 195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDF 273 (413)
T ss_pred eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccc
Confidence 33445555555666667778899999999999999999999888999999999999999999999988754 66667777
Q ss_pred hHHHHHHHhcccCCCCeeEEEEcCC
Q 026461 132 LSVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 132 ~~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
... +.. +.-...-.|++|+.
T Consensus 274 ~~t-~~~----~~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 274 LNT-ATP----EKFRDVTYILVDPS 293 (413)
T ss_pred cCC-CCc----ccccceeEEEeCCC
Confidence 654 221 11245667777753
No 303
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.28 E-value=0.026 Score=48.15 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=74.0
Q ss_pred CCCccCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHH-------HHHHHHHHcCCC
Q 026461 49 WAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVD 121 (238)
Q Consensus 49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~ 121 (238)
.+....+++..-+.+.++...+++.|.|=-.|+|......|.. ++.|+|.||+-.++. ..+.|+++.|..
T Consensus 187 iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~ 263 (421)
T KOG2671|consen 187 IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS 263 (421)
T ss_pred cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc
Confidence 4445567778888888888888899999999999987776653 689999999887765 457899999965
Q ss_pred C-cEEEEecchhHH-HHHHHhcccCCCCeeEEEEcC
Q 026461 122 H-KINFIESEALSV-LDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 122 ~-~v~~~~~d~~~~-l~~~~~~~~~~~~fD~V~~d~ 155 (238)
+ -+.++.+|...- +.. ...||.|++|.
T Consensus 264 ~~fldvl~~D~sn~~~rs-------n~~fDaIvcDP 292 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPPLRS-------NLKFDAIVCDP 292 (421)
T ss_pred chhhheeeecccCcchhh-------cceeeEEEeCC
Confidence 4 356777776542 221 47999999984
No 304
>PRK13699 putative methylase; Provisional
Probab=95.26 E-value=0.036 Score=45.11 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=39.7
Q ss_pred EEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc------------------chHHHHHHHHhccCCCeEEEE
Q 026461 124 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 124 v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~------------------~~~~~~~~~~~~L~~gG~lv~ 179 (238)
++++++|+.+.++.+. .+++|+|+.|.+-. .....+.++.+.|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4688999999998874 68999999995321 123567888899999998875
No 305
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.25 E-value=0.27 Score=41.67 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=68.8
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+.+|.-||-| .|..+..+|..+ ++.|+-+|+|.+.+.+....+ ..+++..-.+...+.... .+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~a 232 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKA 232 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhc
Confidence 34578888877 688888888877 589999999999888777665 356888877776665554 688
Q ss_pred eEEEEc---CCccchHHHHHHHHhccCCCeEEEE
Q 026461 149 DYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 149 D~V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
|+|+-. .......-..+++.+.++||++|+=
T Consensus 233 DlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 233 DLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred cEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 998743 1222233345666788899888763
No 306
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.10 E-value=0.23 Score=42.79 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=57.5
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.+..+||-+|+| .|..++.++.......+|+++|.+++..+.+++ .+. . ... + +. .. ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~-~--~~-~~-------~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI-D--DI-PE-------DLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh-h--hh-hh-------ccC
Confidence 456789999975 233445556542214689999999888887764 221 1 111 1 11 11 235
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+|+||-..........+....++|++||.+++-.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 8988743332224567778889999999988644
No 307
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.10 E-value=0.13 Score=43.77 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=63.1
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~ 152 (238)
+++|+-||.|+.+.-|..+- -..+.++|+++.+++.-+.|+. ....+|+.++-.... .+.+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence 68999999999999888753 2478999999999999998873 778888887643321 11599998
Q ss_pred EcCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461 153 VDADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 153 ~d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
...+++. +..+++.+ +.++| -+++++|+.
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~P-k~~~~ENV~ 112 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKP-KYFLLENVP 112 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS--SEEEEEEEG
T ss_pred eccCCceEeccccccccccccchhhHHHHHHH-hhccc-eEEEecccc
Confidence 7643222 23344443 56788 567778875
No 308
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.09 E-value=0.043 Score=44.40 Aligned_cols=85 Identities=9% Similarity=0.275 Sum_probs=57.1
Q ss_pred CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHc-CCCCcEEEE-ecchhHHHHHHHhcccCCCCe
Q 026461 72 KKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFI-ESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~-~~d~~~~l~~~~~~~~~~~~f 148 (238)
-++||||+|. +.++=+-.. ..+-+++|.|+++..++.|+.++..+ ++...+++. +-|...+++.... ..+.|
T Consensus 80 i~~LDIGvGA--nCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~y 154 (292)
T COG3129 80 IRILDIGVGA--NCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNERY 154 (292)
T ss_pred eEEEeeccCc--ccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---cccee
Confidence 3789999854 444433222 12458999999999999999999887 666667764 3444445544321 15899
Q ss_pred eEEEEcCCccchH
Q 026461 149 DYAFVDADKDNYC 161 (238)
Q Consensus 149 D~V~~d~~~~~~~ 161 (238)
|+..++.+.+...
T Consensus 155 d~tlCNPPFh~s~ 167 (292)
T COG3129 155 DATLCNPPFHDSA 167 (292)
T ss_pred eeEecCCCcchhH
Confidence 9999987644433
No 309
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.06 E-value=0.062 Score=43.08 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=52.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH-HHHHHhcccCCCCeeE
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDY 150 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-l~~~~~~~~~~~~fD~ 150 (238)
-++|||||-+..+...-.. --.|+.||+++.. -.+.+.|..+. +|.. +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~-----~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN-----ESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC-----cccceeE
Confidence 5899999976665544332 3459999998742 23344454442 2221 2579999
Q ss_pred EEEcC------CccchHHHHHHHHhccCCCeE
Q 026461 151 AFVDA------DKDNYCNYHERLMKLLKVGGI 176 (238)
Q Consensus 151 V~~d~------~~~~~~~~~~~~~~~L~~gG~ 176 (238)
|.+.- .+..--+++..+.++|+++|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 98763 233345688888899999999
No 310
>PRK11524 putative methyltransferase; Provisional
Probab=95.01 E-value=0.057 Score=45.49 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=40.2
Q ss_pred cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCcc---c------------h----HHHHHHHHhccCCCeEEEEe
Q 026461 123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N------------Y----CNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~---~------------~----~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+++++|+.+.+..+. .++||+|++|.+-. . + ...+..+.++|+|||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35789999999887663 57999999996421 0 1 35677888999999988864
No 311
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.95 E-value=0.34 Score=42.42 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=63.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc-------
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE------- 143 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~------- 143 (238)
.+|--||- ||.++.+|-.+.. +.+|+|+|+++..++...+ | ...+..-+..+.+.+....+.
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 46666766 6666666655532 4789999999998876653 2 233333333333333222110
Q ss_pred -CCCCeeEEEEcCC----------ccchHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461 144 -NEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 144 -~~~~fD~V~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
....-|++++.-+ .+......+.+.+.|++|-++++....++|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 0125566665311 1223455566678999999999999999885
No 312
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.92 E-value=0.44 Score=41.21 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=63.6
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~ 143 (238)
...+..+||-.|+ +.|..++.+|+.. +.+|++++.+++..+.+++. .|...-+..... +..+.+....
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---- 225 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF---- 225 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC----
Confidence 3456678999887 4777788888876 46899999888876666532 354322222211 3333333331
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.+.+|+||-... ...+..++++|+++|.+++-.
T Consensus 226 -~~gvD~v~d~vG----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 226 -PEGIDIYFDNVG----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -CCCcEEEEECCC----HHHHHHHHHHhccCCEEEEEC
Confidence 247998884322 246677889999999988644
No 313
>PRK11524 putative methyltransferase; Provisional
Probab=94.92 E-value=0.11 Score=43.82 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH
Q 026461 59 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 117 (238)
Q Consensus 59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 117 (238)
.+++..++.. .++..|||--+|+|..++...+. +-+++|+|++++.++.|++.+..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 5566666553 46779999999999877765553 34899999999999999999854
No 314
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.85 E-value=0.43 Score=38.83 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=61.4
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.++.+||..|+|. |..+..++... +.+|++++.+++..+.+++. +...-+.....+..+.+. . ...+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~----~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-L----TGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-H----hcCCC
Confidence 5677999999885 66777777765 47899999998776666432 322112222122222111 1 12468
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+|+++..... ...+..+.+.|+++|.++.-.
T Consensus 202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence 9999865432 245666778899999888643
No 315
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.83 E-value=0.23 Score=45.26 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=59.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe---------------cchh
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---------------SEAL 132 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---------------~d~~ 132 (238)
.++.+++-+|+| .|..+..++..+. ..|+.+|.++...+.+++ .|... +.+-. .+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EeccccccccccccceeecCHHHH
Confidence 356799999998 5677777777764 579999999998777765 23211 11110 0111
Q ss_pred H-HHHHHHhcccCCCCeeEEEEcC---CccchHHHHHHHHhccCCCeEEEE
Q 026461 133 S-VLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 133 ~-~l~~~~~~~~~~~~fD~V~~d~---~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+ ....+.+. ...+|+||.-. ......-..+...+.+|||++|+=
T Consensus 235 ~~~~~~~~e~---~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQ---AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHH---hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 1 01111111 36799997654 111212244566788999988663
No 316
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.78 E-value=0.38 Score=41.37 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=60.0
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..++.+||-.|+| .|..++.+|+... ...|++++.+++..+.+++ .|...-+.....+ .+.+..+. ...
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~----~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL----REL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh----cCC
Confidence 3456789888875 4445566676654 2347899998887776643 3532111211112 12222221 134
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.+|.+++|+.- ....+....++|++||.+++-..
T Consensus 228 ~~d~~v~d~~G--~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLILETAG--VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEEECCC--CHHHHHHHHHHhhcCCEEEEEcc
Confidence 68866666432 24566777899999999887543
No 317
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.73 E-value=0.048 Score=45.09 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHH
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK 117 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~ 117 (238)
+-+|+|+|.|.|..+.-++..+.. ..+++.||+||...+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 468999999999999999887752 25899999999999888888765
No 318
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.71 E-value=0.1 Score=41.73 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461 59 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 113 (238)
Q Consensus 59 ~~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~ 113 (238)
.+++..++. ..++..|||.-||+|..+....+. +-+.+|+|++++.++.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 344444444 346779999999999887766653 3489999999999998875
No 319
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.62 E-value=0.36 Score=41.25 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=58.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
..+..+||-+|+| .|..+..+++... .+ |++++.+++..+.+++ .|...-+.....+ .+.+.... ..
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~ 229 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SG 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CC
Confidence 3456788888864 3445556666654 45 9999999887776654 3542212222222 22222221 13
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+|+||-... ....+....+.|+++|.+++-
T Consensus 230 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 230 AGADVAIECSG---NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 47999885432 233456667889999988863
No 320
>PLN02740 Alcohol dehydrogenase-like
Probab=94.47 E-value=0.54 Score=41.13 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=60.4
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~ 143 (238)
...+..+||-+|+| .|..++.+|+... ..+|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 265 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT---- 265 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh----
Confidence 34566789999875 3445566666653 2379999999988887765 35422122111 11223333331
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 181 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 181 (238)
.+.+|+||-... ....+......+++| |.+++-.
T Consensus 266 -~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 -GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred -CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEc
Confidence 237998875432 234566677788886 8777643
No 321
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.23 E-value=0.66 Score=39.88 Aligned_cols=113 Identities=21% Similarity=0.324 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHH
Q 026461 57 DAGQLMAMLLRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSV 134 (238)
Q Consensus 57 ~~~~~l~~l~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~ 134 (238)
..+..+... +..+...|.-+||| .|.+++.-|.... ..+|+++|+++...+.|++. |..+-++-... |..+.
T Consensus 173 G~Gav~nta-~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~ 246 (366)
T COG1062 173 GIGAVVNTA-KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEA 246 (366)
T ss_pred ChHHhhhcc-cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHH
Confidence 344444433 35567789999997 5777777777665 78999999999999998864 54332322222 45555
Q ss_pred HHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 135 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+..+. .+..|.+|--. ...+.++..+..+.++|..++-.+-
T Consensus 247 i~~~T-----~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 247 IVELT-----DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred HHHhc-----CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecC
Confidence 55552 44888886432 2234666666777778877775443
No 322
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.21 E-value=0.41 Score=41.28 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=61.1
Q ss_pred hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+..+||-+|+|. |..++.+|.... .+|++++.+++..+.+++ .|...-+.....+..++.....+- ....
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~ 236 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKAR 236 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccC
Confidence 44567899999864 666677777764 589999999988877754 254221222221111222211100 0123
Q ss_pred CeeE---EEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 147 SFDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 147 ~fD~---V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
.+|. +++|+. .....++.+.++|++||.+++-...
T Consensus 237 g~d~~~d~v~d~~--g~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 237 GLRSTGWKIFECS--GSKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCCcCEEEECC--CChHHHHHHHHHHhcCCeEEEECcC
Confidence 5652 344443 2244566677899999998875443
No 323
>PLN02827 Alcohol dehydrogenase-like
Probab=94.19 E-value=0.55 Score=41.10 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=59.2
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~ 143 (238)
...+..+||-.|+| .|..++.+++... ...|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT---- 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence 34567789988874 3444555666553 3368999998887776644 35422122111 12223333331
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 181 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 181 (238)
.+.+|+|+-... ....+....+.+++| |.+++-.
T Consensus 261 -~~g~d~vid~~G---~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 -GGGADYSFECVG---DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred -CCCCCEEEECCC---ChHHHHHHHHhhccCCCEEEEEC
Confidence 237998874332 233456677889998 9987643
No 324
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=94.17 E-value=0.13 Score=38.89 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=28.7
Q ss_pred EEccccc--HHHHHHH-hhCCCCCEEEEEeCCchhHHHHHHH--HHHc
Q 026461 76 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA 118 (238)
Q Consensus 76 eiG~G~G--~~t~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~ 118 (238)
|||++.| .++.+++ ....+.++|+++|++|..++..+++ +.-.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666664 2344579999999999999999888 5443
No 325
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.98 E-value=0.41 Score=40.97 Aligned_cols=93 Identities=10% Similarity=-0.078 Sum_probs=60.9
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEE
Q 026461 74 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 153 (238)
Q Consensus 74 vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~ 153 (238)
|+|+.||.|+.+.-+..+- ---+.++|+++.+++.-+.|+. + .++.+|+.++...- ...+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEe
Confidence 5899999999998887642 2346789999999998888752 2 44567877764321 256899986
Q ss_pred cCCccc-----------------hHHHHHHHHhccCCCeEEEEeccc
Q 026461 154 DADKDN-----------------YCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 154 d~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
..++.. +..+++. .+.++| -+++++|+.
T Consensus 66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~-i~~~~P-~~~v~ENV~ 110 (315)
T TIGR00675 66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRI-LKEKKP-KFFLLENVK 110 (315)
T ss_pred cCCCcccchhcccCCCCCchhhHHHHHHHH-HhhcCC-CEEEeeccH
Confidence 532211 1223333 345677 478888874
No 326
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.93 E-value=0.56 Score=41.11 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=58.6
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
++.+|+-+|+| .|..+...+..+. .+|+.+|.+++..+.+...+ + ..+.....+..+ +.+. -..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~-l~~~------l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYE-IEDA------VKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHH-HHHH------HccC
Confidence 56789999997 5666666666653 58999999987766554432 2 112222222222 3332 2578
Q ss_pred eEEEEcCCc--cchHH-HHHHHHhccCCCeEEEEeccccCcc
Q 026461 149 DYAFVDADK--DNYCN-YHERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 149 D~V~~d~~~--~~~~~-~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
|+|+..... ...+. .-+.....+++|++++-=.+-..|.
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence 999975421 11122 2245556788887766433333443
No 327
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.90 E-value=0.91 Score=38.40 Aligned_cols=100 Identities=10% Similarity=0.051 Sum_probs=62.3
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461 66 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 66 ~~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
....++.+||-.|. +.|..++.+|... +.+|++++.+++..+.+++ .|...-+.....+..+.+..+.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~---- 208 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA---- 208 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC----
Confidence 33456678888873 5666777788876 4689999988887776655 3542212222223333333331
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
...+|+|+-... ...+...++.|+++|.++.-
T Consensus 209 -~~gvd~vld~~g----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 -PDGIDCYFDNVG----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -CCCcEEEEECCC----HHHHHHHHHhhccCCEEEEE
Confidence 357998883222 24567778999999998753
No 328
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.88 E-value=0.44 Score=41.15 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=58.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeC---CchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.++.+||-+|+| .|..+..+|+... .+|++++. +++..+.+++ .|.. .+.....+..+ . ..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~-~-~~------ 235 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAE-V-KL------ 235 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhh-h-hh------
Confidence 356789999886 3556677777654 58999987 5666555543 3532 12111111111 1 11
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
...+|+||--.. ....+....+.|+++|.+++-..
T Consensus 236 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 236 VGEFDLIIEATG---VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cCCCCEEEECcC---CHHHHHHHHHHccCCcEEEEEec
Confidence 357998886543 23466777899999998887443
No 329
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.85 E-value=1.1 Score=38.96 Aligned_cols=102 Identities=20% Similarity=0.294 Sum_probs=60.4
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe--cchhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~l~~~~~~~~ 143 (238)
......+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++ .|...-+.... .+..+.+.++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 252 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT---- 252 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence 34556789999875 3555666777653 2379999999988887755 35422122111 11222222321
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEec
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 181 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 181 (238)
.+.+|+|+-... ....+....+.++++ |.++.-.
T Consensus 253 -~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 253 -DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred -CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEe
Confidence 237898874332 244566677888886 8777543
No 330
>PRK13699 putative methylase; Provisional
Probab=93.85 E-value=0.28 Score=39.96 Aligned_cols=56 Identities=7% Similarity=0.029 Sum_probs=42.8
Q ss_pred HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc
Q 026461 60 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 118 (238)
Q Consensus 60 ~~l~~l~~--~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~ 118 (238)
+++..++. ..++..|||--||+|..+....+. +-+++|+|++++..+.+.+.+...
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34444443 346779999999999887766653 458999999999999999888653
No 331
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.83 E-value=0.72 Score=39.66 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=62.8
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
...+..+||-.|+| .|..++.+++... ...|++++.+++..+.+++ .|...-+.....+..+.+..+. ..
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~ 233 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GG 233 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence 34556788888865 4556667777664 3469999999877766664 3542222222223222222221 13
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
..+|+|+-.... ...+..++++|+++|.++.-..
T Consensus 234 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 234 KGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 579988854322 3456778899999998886433
No 332
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.79 E-value=0.97 Score=38.65 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=58.9
Q ss_pred CEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 72 KKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 72 ~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
.+||-.|+ |.|..++.+|+... ..+|++++.+++..+.+++. .|...-+.....+..+.+..+. ...+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCce
Confidence 68888885 56777788888763 22799999888776666553 3543212222223333333331 35799
Q ss_pred EEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 150 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+|+-... . ..+...+++|+++|.++.
T Consensus 227 ~vid~~g-~---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 227 VYFDNVG-G---EISDTVISQMNENSHIIL 252 (345)
T ss_pred EEEECCC-c---HHHHHHHHHhccCCEEEE
Confidence 8884322 1 234677899999998885
No 333
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.74 E-value=0.92 Score=39.02 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=65.8
Q ss_pred HhhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhccc
Q 026461 66 LRLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 143 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 143 (238)
.+.....+||-.|.. .|..++.||+.+. ..++.+--+++..+.+ .+.|.+.-+.+...|..+.+.++.
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t---- 207 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT---- 207 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc----
Confidence 345567899999854 4556677888764 3667776666554433 344654445666666666665552
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
....+|+|+-.-. ...+......|+++|.++.-..
T Consensus 208 ~g~gvDvv~D~vG----~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 GGKGVDVVLDTVG----GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCCceEEEECCC----HHHHHHHHHHhccCCEEEEEec
Confidence 1247999985432 4455557788899998887443
No 334
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.66 E-value=1.1 Score=37.24 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
+..+||-+|+| .|..+..+|+... ..+|+.+|.+++..+.+++ .|...-+.. .+..+.+..+. ....+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGV 188 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCC
Confidence 56789988875 4555566776653 3359999998887777665 353211111 11112222221 13469
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
|+|+-... ....++.+.++|+++|.++.-...
T Consensus 189 d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVALEFSG---ATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEEECCC---ChHHHHHHHHHhcCCCEEEEeccC
Confidence 99874332 244566778899999998875543
No 335
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.61 E-value=1.5 Score=37.22 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=61.8
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhcc
Q 026461 66 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS 142 (238)
Q Consensus 66 ~~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~ 142 (238)
....+..+||-.|. +.|..++.+++.. +.+|++++.+++..+.+++ .|...-+..... +..+.+...
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---- 203 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---- 203 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence 34556678988884 4777778888875 4689999988887776653 354221222211 222233332
Q ss_pred cCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+.+|+||-... ...+...+++|+++|.++.-
T Consensus 204 -~~~gvdvv~d~~G----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 -SPDGYDCYFDNVG----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred -CCCCeEEEEECCC----HHHHHHHHHHhCcCcEEEEe
Confidence 1357998884322 13457778999999998864
No 336
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.60 E-value=0.5 Score=42.34 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=65.5
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~ 152 (238)
+++.+|||.--....+-+.. -..|+.+|+|+-.++.....-... ....++...|+... . ++.++||+|+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l--~-----fedESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQL--V-----FEDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccC--CcceEEEEecchhc--c-----CCCcceeEEE
Confidence 79999998877666665542 357999999999888776543211 23467777777654 2 2368999887
Q ss_pred EcCC-------------ccchHHHHHHHHhccCCCeEEEE
Q 026461 153 VDAD-------------KDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 153 ~d~~-------------~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.-+. .......+..+.+.|++||..+.
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 4211 12234567788899999997554
No 337
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.59 E-value=1.6 Score=40.52 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=34.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE 106 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~ 106 (238)
+.+...|||+||..|.+..-.++.+|.++-|+|+|+-|-
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 446678999999999999999999998899999999764
No 338
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.54 E-value=0.32 Score=41.20 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=27.1
Q ss_pred CCCeeEEEEc---CCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d---~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+.||+|+.. ...++..++++.+...|+|||+.|=
T Consensus 257 ~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 257 AGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 4579998532 2356788999999999999998764
No 339
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.52 E-value=0.52 Score=40.04 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=51.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+|.-||+| ..+..++..+... .+|+++|.+++..+.+++ .|... . ...+.. .. ....
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~----~~------~~~a 67 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAA----EA------VKGA 67 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHH----HH------hcCC
Confidence 578889875 4444444333212 389999999887666543 23211 1 111211 11 2467
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
|+|++..+.......++.+.+.+++|++++
T Consensus 68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 888887765555666677767778876544
No 340
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.52 E-value=1.4 Score=37.63 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=62.5
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec-chhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~ 143 (238)
...++.+||-.|+ |.|..++.+|+.. +.+|+++..+++..+.+++. .|...-+..... +..+.+....
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---- 218 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF---- 218 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC----
Confidence 3456778998886 4666777788875 46899998888877766652 254222222111 2323333321
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
...+|+|+-... ...+..++++|+++|.++.-
T Consensus 219 -~~gvd~v~d~~g----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 -PNGIDIYFDNVG----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred -CCCcEEEEECCC----HHHHHHHHHHhccCcEEEEe
Confidence 257999884322 24567788999999988853
No 341
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.42 Score=41.34 Aligned_cols=49 Identities=20% Similarity=0.055 Sum_probs=40.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCchhHHHHHHHHHHcC
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKAG 119 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~ 119 (238)
+-.++|||.|.|....-++..+. ...++..||+|++..+.-++.++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 45799999999999988887652 25789999999999888888876543
No 342
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.46 E-value=0.84 Score=38.98 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=59.0
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
...++.+||..|+| .|..++.+|+... ..++++++.++...+.+++ .+...-+.....+..+.+..+. ..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~ 234 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GG 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CC
Confidence 34456788887764 4666677777653 2478899887766665553 2422112222222223333321 13
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+|+++-.... ...+...++.|+++|.++.-
T Consensus 235 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence 579988843221 24667778899999988753
No 343
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.43 E-value=2.2 Score=38.00 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=58.7
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc-----cCC
Q 026461 72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE 145 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~-----~~~ 145 (238)
++|.-||.|. .+..+|..+. .+.+|+++|.+++.++..+. |. +.+...+..+.+......+ ...
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 5688888854 4444444332 14789999999988775321 21 2222222222222111000 001
Q ss_pred CCeeEEEEcCCc----------cchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 146 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 146 ~~fD~V~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
..-|+||+.-+. .......+.+.+.+++|.+++.......|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 356899886443 23445567777889998888887776555
No 344
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.39 E-value=0.64 Score=31.88 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=53.9
Q ss_pred EEEEcccccHHHHHHHhhCCC-C---CEEE-EEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 74 TIEIGVFTGYSLLLTALTIPE-D---GQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 74 vLeiG~G~G~~t~~la~~~~~-~---~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
|.=||+ |..+..++..+-. + .+|+ +.+.+++..+...+.+ + +.+...+..+.+. .-
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a 62 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA 62 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence 455665 6666666655422 2 5888 4499998877665542 2 4555545555543 45
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
|+||+.-.+....+.++.+ ..+.++.+++
T Consensus 63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 8999998888999998888 6666655554
No 345
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.33 E-value=0.66 Score=38.75 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=68.0
Q ss_pred cCCCEEEEEcccccHHHHH-HHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVFTGYSLLL-TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~-la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
..++.|+-+|-- -..++. ++..+| .+|..+|+++..++...+..++.|+. +++.+.-|.+..+|+-. ...
T Consensus 151 L~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~k 221 (354)
T COG1568 151 LEGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRK 221 (354)
T ss_pred cCCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----Hhh
Confidence 356789999943 333343 344454 68999999999999999999999984 48888889888776543 579
Q ss_pred eeEEEEcCC--ccchHHHHHHHHhccCCC
Q 026461 148 FDYAFVDAD--KDNYCNYHERLMKLLKVG 174 (238)
Q Consensus 148 fD~V~~d~~--~~~~~~~~~~~~~~L~~g 174 (238)
||+++-|.+ ......|+..=...|+.-
T Consensus 222 FDvfiTDPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 222 FDVFITDPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred CCeeecCchhhHHHHHHHHhccHHHhcCC
Confidence 999998863 222334444444566654
No 346
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.28 E-value=0.21 Score=38.49 Aligned_cols=45 Identities=16% Similarity=0.020 Sum_probs=33.5
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 113 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~ 113 (238)
...+|.+|+-+|.| .|..+..++..++ .+++.+|..+...+..+.
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES 61 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence 34578899999998 5777788888884 799999999887766554
No 347
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.25 E-value=0.44 Score=41.89 Aligned_cols=83 Identities=22% Similarity=0.155 Sum_probs=52.7
Q ss_pred CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCC
Q 026461 72 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS 147 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~ 147 (238)
++||-|||| ..+...+..+. ...+|+..|.+++.++.+..... .+++.++.|+.+. +.++ -..
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l------i~~ 68 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL------IKD 68 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH------Hhc
Confidence 579999994 44444333321 13799999999988887766531 3688888787653 4344 256
Q ss_pred eeEEEEcCCccchHHHHHHH
Q 026461 148 FDYAFVDADKDNYCNYHERL 167 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~ 167 (238)
+|+|+.-.+.......++.+
T Consensus 69 ~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 69 FDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred CCEEEEeCCchhhHHHHHHH
Confidence 69998766544444444333
No 348
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.04 E-value=3.5 Score=37.46 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=56.4
Q ss_pred EEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHH---cCC--------CCcEEEEecchhHHHHHH
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKK---AGV--------DHKINFIESEALSVLDQL 138 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~---~~~--------~~~v~~~~~d~~~~l~~~ 138 (238)
+|.-||+|..+ ..+|..+.. +.+|+++|++++.++..++.... .++ ..++.+ ..|..+.
T Consensus 3 ~I~ViG~GyvG--l~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~---- 75 (473)
T PLN02353 3 KICCIGAGYVG--GPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKH---- 75 (473)
T ss_pred EEEEECCCHHH--HHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHH----
Confidence 57788875444 443433321 36799999999988876542100 000 001111 1121111
Q ss_pred HhcccCCCCeeEEEEcCC-cc--------------chHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461 139 LKYSENEGSFDYAFVDAD-KD--------------NYCNYHERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~-~~--------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
-..-|++|+.-+ +. ......+.+.+.|++|-++++......|.
T Consensus 76 ------i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 76 ------VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred ------HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 145688877421 11 23445566678889988889888887664
No 349
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.98 E-value=1.6 Score=37.84 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=60.8
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~~ 143 (238)
...+..+||-+|+| .|..+..+|+... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 253 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT---- 253 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh----
Confidence 34567789888864 4445566777654 2379999999988777654 354221222111 1223333331
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 182 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (238)
.+.+|+|+-... ....+....++|+++ |.++.-..
T Consensus 254 -~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 -DGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred -CCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEcc
Confidence 247998884322 134566677889887 87776443
No 350
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.93 E-value=0.67 Score=33.96 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHhhcCCCEEEEEcccccHHH-HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461 63 AMLLRLVNAKKTIEIGVFTGYSL-LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 141 (238)
Q Consensus 63 ~~l~~~~~~~~vLeiG~G~G~~t-~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 141 (238)
...++..+..+|+|+|.|.=... ..|.+. +..|+++|+.+. .+. ..++++.-|+.+--..+
T Consensus 6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~i--- 67 (127)
T PF03686_consen 6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEI--- 67 (127)
T ss_dssp HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc---------cCcceeeecccCCCHHH---
Confidence 33444567779999999865544 344443 478999999988 111 23677777776632232
Q ss_pred ccCCCCeeEEEEcCCccchHHHHHHHHhccC
Q 026461 142 SENEGSFDYAFVDADKDNYCNYHERLMKLLK 172 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~ 172 (238)
-...|+|+.--++......+-.+.+.+.
T Consensus 68 ---Y~~a~lIYSiRPP~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 68 ---YEGADLIYSIRPPPELQPPILELAKKVG 95 (127)
T ss_dssp ---HTTEEEEEEES--TTSHHHHHHHHHHHT
T ss_pred ---hcCCcEEEEeCCChHHhHHHHHHHHHhC
Confidence 2689999987766666666655555443
No 351
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.88 E-value=0.47 Score=36.15 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=58.5
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcC------CCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
+|.-||+|.++.++...-... +.+|+-...+++.++..++.-.... +..++.+ ..|..+.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence 467788877666554333222 4589999999877776665422111 1123433 33443332 4
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.-|+|++--+.....++++.+.+.++++-.++.
T Consensus 69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 669999988878889999999999988776664
No 352
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.87 E-value=0.56 Score=39.77 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=54.6
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
+..++|-+|+| .|..++.+|.... ...|+++|.+++.++.+.+. . ++ |..+. . ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~ 201 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDY 201 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCC
Confidence 45678888875 5666677777664 34577888887766655431 1 11 11111 1 3579
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
|+||-... ....++.+.++|+++|.+++-.
T Consensus 202 Dvvid~~G---~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 202 RAIYDASG---DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CEEEECCC---CHHHHHHHHHhhhcCcEEEEEe
Confidence 98874332 2345677789999999998644
No 353
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.85 E-value=1.1 Score=38.33 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=58.2
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
...+..+||-.|+| .|..+..+|+.. +.+|++++.+++..+.+++ .|... ++. ..+. ..
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~---------~~ 221 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT---------PP 221 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc---------Cc
Confidence 34456789999864 344456666665 4689999999888776665 35432 111 1110 02
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
+.+|+++..... ...+....+.|++||.+++-..
T Consensus 222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 468876653322 2467778899999999887544
No 354
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.80 E-value=1.8 Score=37.15 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..++.+||-.|+| .|..++.++.... ..+|++++.+++..+.+++ .|...-+.....+..+.+..+. ...
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAG-ASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CCC
Confidence 4456788888753 3444555666543 2389999988887777654 2542222222233333333331 124
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
.+|+|+-... ....++.+++.|+++|.++.-.
T Consensus 241 ~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAG---VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCC---CHHHHHHHHHhccCCCEEEEEc
Confidence 5999985432 1345677788999999887643
No 355
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.76 E-value=1.4 Score=39.23 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=57.6
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...++|+-+|+| .|......+..+ +.+|+.+|.++...+.|+. .|. +.. +..+ .+ ..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v-------~~ 257 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV-------KE 257 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH-------cC
Confidence 357899999998 455556666655 4689999999988777764 243 222 1111 11 46
Q ss_pred eeEEEEcCCccchHHHHHH-HHhccCCCeEEEEec
Q 026461 148 FDYAFVDADKDNYCNYHER-LMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~-~~~~L~~gG~lv~~~ 181 (238)
.|+|+.... ....+.. ..+.+++||+++.-.
T Consensus 258 aDVVI~atG---~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 258 GDIFVTTTG---NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCEEEECCC---CHHHHHHHHHhcCCCCcEEEEeC
Confidence 799886432 3445554 478999999987643
No 356
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.72 E-value=0.86 Score=39.21 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=66.9
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC-Cee
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD 149 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~-~fD 149 (238)
..+++|+-||.|+..+-+..+. ---+.++|+++.+++.-+.|+.. -.++..|+.+...+-. .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence 4579999999999998887753 24689999999999988887632 4556667766533321 12 789
Q ss_pred EEEEcCCccch-----------------HHHHHHHHhccCCCeEEEEeccc
Q 026461 150 YAFVDADKDNY-----------------CNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 150 ~V~~d~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+++-..+++.+ ..+++ +...++| -+++++|+-
T Consensus 70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r-~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIR-LIEQLRP-KFFVLENVK 118 (328)
T ss_pred EEEeCCCCcchhhcCcccCCcCccceeeHHHHH-HHHhhCC-CEEEEecCc
Confidence 99865433221 23333 3467788 888888874
No 357
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.69 E-value=1.7 Score=37.10 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=62.0
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
....+..+||-.|+|. |..++.+|+.. +.+|+++..+++..+.+++ .+...-+.....+..+.+.... .
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~ 224 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----D 224 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----C
Confidence 3445667899988763 66777788875 5789999888777766643 2432212222223223333331 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
...+|+++-.... ...+..+++.|+++|.++.
T Consensus 225 ~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 3569999865321 3456777888999998775
No 358
>PTZ00357 methyltransferase; Provisional
Probab=92.67 E-value=0.59 Score=43.85 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=68.4
Q ss_pred EEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchhHHHHHHHHHH-cCC-------CCcEEEEecchhHHHHHHH-h
Q 026461 73 KTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKK-AGV-------DHKINFIESEALSVLDQLL-K 140 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~-------~~~v~~~~~d~~~~l~~~~-~ 140 (238)
.|+-+|+|-|-......++ .....+|++||-++..+.....+... ... .++|+++..|.+++-.... .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999876554443 33357899999998876655554322 122 3469999999988732110 0
Q ss_pred c---ccCCCCeeEEEEc-----CCccchHHHHHHHHhccCC----CeE
Q 026461 141 Y---SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI 176 (238)
Q Consensus 141 ~---~~~~~~fD~V~~d-----~~~~~~~~~~~~~~~~L~~----gG~ 176 (238)
+ +...+++|+|+.- ++-+..++.++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0 0012479999863 3455668888888888876 776
No 359
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=92.60 E-value=2.1 Score=36.53 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=57.5
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+..+||-.|+| .|..+..+++... ..+|++++.++...+.+++ .|...-+.....+....+..+. ...
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~ 234 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence 3455677777653 3334455666553 2678999888876665553 3543223333233323233321 135
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+|+|+- +. .....++.+.+.|+++|.++.
T Consensus 235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 235 GVDVVIE-AV--GIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEE
Confidence 7998873 32 224457778899999998875
No 360
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=92.56 E-value=1.9 Score=37.47 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=59.8
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhcc
Q 026461 66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS 142 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~ 142 (238)
....+..+||-.|+| .|..+..+|+... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 254 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT--- 254 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence 344567788888864 3444556666653 3489999999888777754 354221222111 1222233331
Q ss_pred cCCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461 143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 182 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (238)
.+.+|+++--.. ....+....+.+++| |.+++-..
T Consensus 255 --~~~~d~vid~~G---~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 --GGGVDYSFECTG---NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred --CCCCCEEEECCC---ChHHHHHHHHHhhcCCCEEEEECc
Confidence 247897774321 244556677888996 88876443
No 361
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=92.49 E-value=2.1 Score=37.19 Aligned_cols=102 Identities=21% Similarity=0.325 Sum_probs=59.6
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~~~ 144 (238)
..+..+||-+|+| .|..++.+|+... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~----- 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT----- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----
Confidence 4566788888874 4445566677653 3379999999888777754 354221221111 1123333331
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 182 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (238)
...+|+|+-... ....+...++.++++ |.++.-..
T Consensus 252 ~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 GGGVDYSFECTG---NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEcC
Confidence 257998884322 134566778889885 88776433
No 362
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.41 E-value=2.3 Score=33.89 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=45.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
...+|+-+|||. |......+.... -++++.+|.+. ..++.+.+.+...+..-+++.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 567899999973 333333332223 46899999872 345556666666553333444443
Q ss_pred chhH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461 130 EALS-VLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
.... .+..+ -..+|+|+...+
T Consensus 99 ~i~~~~~~~~------~~~~D~Vi~~~d 120 (202)
T TIGR02356 99 RVTAENLELL------INNVDLVLDCTD 120 (202)
T ss_pred cCCHHHHHHH------HhCCCEEEECCC
Confidence 3322 22333 368999876543
No 363
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=92.13 E-value=1.9 Score=36.67 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=60.4
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhccc
Q 026461 66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE 143 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~ 143 (238)
....++.+||-.|+| .|..++.++.... +.+|++++.+++..+.+++ .|...-+.... .+..+.+...
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~----- 227 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK----- 227 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh-----
Confidence 334566788888854 4555566666532 5689999999988777753 35422111111 1112223322
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+.+|.++++.. ....++.+++.|+++|.++.
T Consensus 228 -~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 228 -TGGAHAAVVTAV---AKAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred -cCCCcEEEEeCC---CHHHHHHHHHhccCCCEEEE
Confidence 246887777653 24567788899999998875
No 364
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.10 E-value=0.84 Score=38.84 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=55.9
Q ss_pred CEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 72 KKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 72 ~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
.+|+-+|+| .|+.+..|++. +..|+.++..++.++..++. .|+ .+.........+.........++||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGL----TLVEQGQASLYAIPAETADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCe----EEeeCCcceeeccCCCCcccccccC
Confidence 468999997 34444555542 35799999976555544431 122 1110000000000000001136899
Q ss_pred EEEEcCCccchHHHHHHHHhccCCCeEE-EEeccc
Q 026461 150 YAFVDADKDNYCNYHERLMKLLKVGGIA-VYDNTL 183 (238)
Q Consensus 150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~l-v~~~~~ 183 (238)
+||+--...+....++.+.+++.++..+ .+.|-+
T Consensus 73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv 107 (305)
T PRK05708 73 RLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGL 107 (305)
T ss_pred EEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 9998765555677888888899888855 445444
No 365
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.09 E-value=0.07 Score=38.03 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=28.3
Q ss_pred CeeEEEEcCC---------ccchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 147 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 147 ~fD~V~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
.||+|++-.. ......+|+.+..+|+|||+++++---|..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s 49 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS 49 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence 4899987542 344678999999999999999998655543
No 366
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.09 E-value=5.7 Score=35.00 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=56.0
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHH------------HHHHcCCCCcEEEEecchhHHHHHHH
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLP------------IIKKAGVDHKINFIESEALSVLDQLL 139 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~l~~~~ 139 (238)
+|--+|+| |.++-.+..+.. +..|+|+|++++.++..++ .++++....|++|-. |..+. .
T Consensus 2 kI~viGtG--YVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~a---~- 74 (414)
T COG1004 2 KITVIGTG--YVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEEA---V- 74 (414)
T ss_pred ceEEECCc--hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHHH---H-
Confidence 45667774 444332222221 4689999999998887653 222222223454443 33222 1
Q ss_pred hcccCCCCeeEEEEcCC-c---------cchHHHHHHHHhccCCCeEEEEeccccCc
Q 026461 140 KYSENEGSFDYAFVDAD-K---------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 186 (238)
Q Consensus 140 ~~~~~~~~fD~V~~d~~-~---------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 186 (238)
..-|++|+.-+ + .......+.+.+.++..-++|.......|
T Consensus 75 ------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG 125 (414)
T COG1004 75 ------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG 125 (414)
T ss_pred ------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence 46688888521 1 11233445555677777788887777555
No 367
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.07 E-value=2.9 Score=35.51 Aligned_cols=109 Identities=12% Similarity=0.192 Sum_probs=69.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCC--CcEEEEecchh-H-HHHHHHhcccCCC
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEAL-S-VLDQLLKYSENEG 146 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~-~-~l~~~~~~~~~~~ 146 (238)
...|+.+|| |.-|...---.+.+.+|.-+|. |+.++.=++.+...+.. ...+++..|.. + +...+.+.++...
T Consensus 93 ~~qvViLga--GLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGA--GLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecc--ccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 678999999 5555544433343466777776 77888878888777643 36888999987 3 4455543221112
Q ss_pred CeeEEEEcC-----CccchHHHHHHHHhccCCCeEEEEecc
Q 026461 147 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 147 ~fD~V~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.-=+++.-+ +.+....+|+.+..++.||..++++-.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 222333332 345567888999888888888777643
No 368
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.99 E-value=2.3 Score=36.29 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=63.9
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE--ecchhHHHHHHHhcc
Q 026461 66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYS 142 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~l~~~~~~~ 142 (238)
+...+...+.-+|.|. |.+.+.-++... .+++++||++++..+.|++. |..+-++-. ...+.+.+.+..
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT--- 259 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT--- 259 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh---
Confidence 3455677888888864 333344444433 68999999999999999864 543322221 224566666653
Q ss_pred cCCCCeeEEEEcCCccchHHHHHHHHhccCCC-eEEEEecc
Q 026461 143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 182 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 182 (238)
++.+|+-|=-. ...+.+..++...++| |.-++-.+
T Consensus 260 --dgGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 260 --DGGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred --cCCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEEe
Confidence 68999988332 2244455555556676 66555433
No 369
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.83 E-value=2.6 Score=36.49 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=47.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCcEEE
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF 126 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~ 126 (238)
..++||-||||. .+..++..+.. -++++-+|.+. ..++.+++.+...+..-+++.
T Consensus 23 ~~~~VlIiG~Gg--lGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 23 REKHVLIVGAGA--LGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred cCCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 457899999963 33333332211 36899999874 245566677777664445666
Q ss_pred Eecchh-HHHHHHHhcccCCCCeeEEEEcCC
Q 026461 127 IESEAL-SVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 127 ~~~d~~-~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
+..+.. +.+..+ -..+|+|+...+
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid~~D 125 (338)
T PRK12475 101 VVTDVTVEELEEL------VKEVDLIIDATD 125 (338)
T ss_pred EeccCCHHHHHHH------hcCCCEEEEcCC
Confidence 665543 233333 367999886543
No 370
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.82 E-value=2.1 Score=37.12 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=58.9
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+..+||-.|+| .|..++.+++... ..++++++.+++..+.+++ .+...-+.....+..+.+..+. ..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~~ 253 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----GG 253 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----CC
Confidence 4456788888765 3566677777764 3479999999887766654 2432111111112223333331 35
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+|+|+-.... ...+..+++.|+++|.++.
T Consensus 254 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 254 GVDYALDTTGV---PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CCcEEEECCCC---cHHHHHHHHHhccCCEEEE
Confidence 79988854322 2356677888999998875
No 371
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.67 E-value=1.1 Score=34.67 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=57.8
Q ss_pred EcccccHHHHHHHhhCCCCCEEEEEeCCc--hhHH---HHHHHHHHcCCCCcEEE-EecchhHHHHHHHhcccCCCCeeE
Q 026461 77 IGVFTGYSLLLTALTIPEDGQITAIDVNR--ETYE---IGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDY 150 (238)
Q Consensus 77 iG~G~G~~t~~la~~~~~~~~v~~iD~~~--~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~l~~~~~~~~~~~~fD~ 150 (238)
+|=|.=..+..|++.+....++++.-.+. +..+ .+..++....- ..+++ ...|+.++-.... .....||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~---~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFR---LKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCccccccc---ccCCcCCE
Confidence 55566667777888766455665555443 3322 23345544321 12333 3445555433221 12579999
Q ss_pred EEEcCCccc----------------hHHHHHHHHhccCCCeEEEEe
Q 026461 151 AFVDADKDN----------------YCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 151 V~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+.+.++.. ...+|..+.++|+++|.|.+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998754322 256788888999999988774
No 372
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.41 E-value=3 Score=30.07 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=56.1
Q ss_pred HHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcc
Q 026461 64 MLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 142 (238)
Q Consensus 64 ~l~~~~~~~~vLeiG~G~G~-~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 142 (238)
..+.....++|+|+|.|.=. .+..|++. +..|+++|+++. .+ + ..+++..-|..+---.+
T Consensus 7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------~--~g~~~v~DDitnP~~~i---- 67 (129)
T COG1255 7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------P--EGLRFVVDDITNPNISI---- 67 (129)
T ss_pred HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------c--ccceEEEccCCCccHHH----
Confidence 34456677899999996432 33445543 468999999987 11 1 23788888876642222
Q ss_pred cCCCCeeEEEEcCCccchHHHHHHHHhccCC
Q 026461 143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKV 173 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~ 173 (238)
-...|+|++--++......+-.+.+.++-
T Consensus 68 --Y~~A~lIYSiRpppEl~~~ildva~aVga 96 (129)
T COG1255 68 --YEGADLIYSIRPPPELQSAILDVAKAVGA 96 (129)
T ss_pred --hhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence 36889999876665555555555555443
No 373
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.29 E-value=2.1 Score=37.71 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=60.8
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~ 145 (238)
.....+||-.|+| .|..++.+|+... ...|+.+|.+++..+.+++. |.. .+.... .+..+.+..+. ..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~~----Ga~-~v~~~~~~~~~~~v~~~~----~~ 252 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARSF----GCE-TVDLSKDATLPEQIEQIL----GE 252 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHc----CCe-EEecCCcccHHHHHHHHc----CC
Confidence 4456677777775 4555566777654 33466778888777777653 542 111111 12223333331 13
Q ss_pred CCeeEEEEcCCccc-----------hHHHHHHHHhccCCCeEEEEecc
Q 026461 146 GSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 146 ~~fD~V~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
..+|+|+--..... ....++...+++++||.+++-.+
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 46898875432211 12467888899999999988554
No 374
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=3.4 Score=36.37 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=63.7
Q ss_pred CEEEEEcc-cccH--HHHHHHhhCCC---CCEEEEEeC-CchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 72 KKTIEIGV-FTGY--SLLLTALTIPE---DGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 72 ~~vLeiG~-G~G~--~t~~la~~~~~---~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
..|+=+|- |.|- +..-+|.++.. ..-++|-|. -+.+.++.++|..+.+.+-...+-..|...+..+-.+ .+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~-~fK 180 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD-RFK 180 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH-HHH
Confidence 34666654 2333 23335544432 234677775 4567788888887776543334444554443322111 134
Q ss_pred CCCeeEEEEcCC--ccchHHHHHHH---HhccCCCeEEEEeccc
Q 026461 145 EGSFDYAFVDAD--KDNYCNYHERL---MKLLKVGGIAVYDNTL 183 (238)
Q Consensus 145 ~~~fD~V~~d~~--~~~~~~~~~~~---~~~L~~gG~lv~~~~~ 183 (238)
.+.||+|++|-. +..-..+|+++ .+.++|+-+|.+=|..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 689999999942 33344555555 4789999888776554
No 375
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.04 E-value=1.2 Score=37.33 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=51.6
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
+|.-||+ |..+..++..+. .+.+|+++|.+++..+.+.+. +. +.....+. .. ....|+|
T Consensus 2 ~I~IIG~--G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~----~~-------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGL--GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL----SL-------LKDCDLV 61 (279)
T ss_pred eEEEEee--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH----hH-------hcCCCEE
Confidence 4666776 445444444432 145899999998877766542 32 11111111 11 2467899
Q ss_pred EEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 152 FVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+..+.......++.+.+.++++. ++.+
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~-ii~d 89 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEA-IVTD 89 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCc-EEEe
Confidence 988776666777777777777754 4443
No 376
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=90.99 E-value=1.4 Score=36.28 Aligned_cols=114 Identities=17% Similarity=0.283 Sum_probs=62.5
Q ss_pred HhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHH
Q 026461 56 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 135 (238)
Q Consensus 56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 135 (238)
+.....+..+...+.... +..+.|.-.+. +..++++-+.+.+|+.+.-.+..++++.. ..++++.+.|+.+.+
T Consensus 44 ~~l~~yl~~v~~~n~~~~---l~~YPGSP~ia-~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l 116 (245)
T PF04378_consen 44 PALQPYLDAVRALNPDGE---LRFYPGSPAIA-ARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL 116 (245)
T ss_dssp GGGHHHHHHHHHHSSSSS-----EEE-HHHHH-HHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred HHHHHHHHHHHHhccCCC---cCcCCCCHHHH-HHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence 344555555544444333 44455544332 23345578999999999999988888754 357999999999977
Q ss_pred HHHHhcccCCCCeeEEEEcCC---ccchHHHHHHHHhccC--CCeEEEE
Q 026461 136 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY 179 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~---~~~~~~~~~~~~~~L~--~gG~lv~ 179 (238)
..+. ++...--+|+||.+ +.++....+.+...++ +.|++++
T Consensus 117 ~all---PP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 117 KALL---PPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHH----S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hhhC---CCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 6664 23566779999974 4456665555554444 4676665
No 377
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=90.98 E-value=0.42 Score=40.64 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=54.5
Q ss_pred EEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH-HHHHHhcccCCCCeeEEE
Q 026461 75 IEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAF 152 (238)
Q Consensus 75 LeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-l~~~~~~~~~~~~fD~V~ 152 (238)
+|||+ |.+.++.+.... .+-..+++|++...+..|.+++.++++.+.+.+++.+..+. ++..... ..+..||+..
T Consensus 107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcM 183 (419)
T KOG2912|consen 107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCM 183 (419)
T ss_pred eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEe
Confidence 67776 777777776543 13468999999999999999999999999898888766542 2222111 1134577777
Q ss_pred EcC
Q 026461 153 VDA 155 (238)
Q Consensus 153 ~d~ 155 (238)
++.
T Consensus 184 cNP 186 (419)
T KOG2912|consen 184 CNP 186 (419)
T ss_pred cCC
Confidence 653
No 378
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.94 E-value=4.7 Score=34.99 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=54.8
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.+..+||-.|+| .|..++.+|+.. +.++++++.+++....+ .+..|.. .++.....+.+... .+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~ 247 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGT 247 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCC
Confidence 356678888875 455566677765 46788888876543222 1233542 22211111222222 246
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
+|+||-... ....+....+.|++||.++.-.
T Consensus 248 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 248 MDYIIDTVS---AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence 898883322 2345677889999999888643
No 379
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.83 E-value=3 Score=35.33 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=45.9
Q ss_pred EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 73 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 73 ~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
+||-+||| .|...+..+...+ -++++-+|.+. ...+.|.+.+.+.+..-+++....+..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47889985 3333333222223 47888888644 235566667766664445666666665
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCC
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
+....+ -.+||+|+...+
T Consensus 80 ~~~~~f------~~~fdvVi~alD 97 (291)
T cd01488 80 DKDEEF------YRQFNIIICGLD 97 (291)
T ss_pred chhHHH------hcCCCEEEECCC
Confidence 543344 378999987543
No 380
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=90.75 E-value=0.91 Score=37.64 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=46.9
Q ss_pred HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHH
Q 026461 86 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 165 (238)
Q Consensus 86 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~ 165 (238)
..|.+..+ ..+|+++|.+++.++.|.+. |..+. ...+ ...+ ..+|+|++.-+.......++
T Consensus 3 ~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~~---~~~~----~~~~-------~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 3 LALRKAGP-DVEVYGYDRDPETLEAALEL----GIIDE---ASTD----IEAV-------EDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSSE---EESH----HHHG-------GCCSEEEE-S-HHHHHHHHH
T ss_pred HHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCeee---ccCC----HhHh-------cCCCEEEEcCCHHHHHHHHH
Confidence 34444433 68999999999988877643 54331 2211 1222 56799999988888889999
Q ss_pred HHHhccCCCeEEE
Q 026461 166 RLMKLLKVGGIAV 178 (238)
Q Consensus 166 ~~~~~L~~gG~lv 178 (238)
.+.+.+++|++++
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 9988888865443
No 381
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=90.70 E-value=3.5 Score=33.76 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=48.0
Q ss_pred EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 73 KTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
+||-+|+| ..+..+++.+ ..-++++.+|.+. ...+.+.+.+.+.+..-+++....++
T Consensus 1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 47888885 4444444332 1147888888754 23455566666665444566666655
Q ss_pred h---HHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHH
Q 026461 132 L---SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 167 (238)
Q Consensus 132 ~---~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~ 167 (238)
. +....+ -.+||+|+...+......++..+
T Consensus 79 ~~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 79 GPEQDFNDTF------FEQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred ChhhhchHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence 2 222233 36899999754333334444433
No 382
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.65 E-value=2.8 Score=30.81 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecc
Q 026461 71 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESE 130 (238)
Q Consensus 71 ~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d 130 (238)
..+|+-+||| .|......+.... -++++-+|.+. ...+.+++.+.+.+..-+++.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 4689999996 3443333332223 47899988643 3466777788777655567777766
Q ss_pred h-hHHHHHHHhcccCCCCeeEEEEcCCc
Q 026461 131 A-LSVLDQLLKYSENEGSFDYAFVDADK 157 (238)
Q Consensus 131 ~-~~~l~~~~~~~~~~~~fD~V~~d~~~ 157 (238)
. .+....+ -..+|+|+.....
T Consensus 81 ~~~~~~~~~------~~~~d~vi~~~d~ 102 (135)
T PF00899_consen 81 IDEENIEEL------LKDYDIVIDCVDS 102 (135)
T ss_dssp CSHHHHHHH------HHTSSEEEEESSS
T ss_pred ccccccccc------ccCCCEEEEecCC
Confidence 6 2334444 2588999875433
No 383
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.64 E-value=1.4 Score=37.01 Aligned_cols=90 Identities=23% Similarity=0.149 Sum_probs=54.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+|+-+|. |..+-+++..+.. ...+++.|.+....+.+.+. |+.+ -..+. ..... ....
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d----~~~~~--~~~~~------~~~a 65 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID----ELTVA--GLAEA------AAEA 65 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc----ccccc--hhhhh------cccC
Confidence 46777886 5555555555432 34567777777666655432 3221 11111 10111 3578
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
|+|++.-+......+++++.+.|++|. ++.|
T Consensus 66 D~VivavPi~~~~~~l~~l~~~l~~g~-iv~D 96 (279)
T COG0287 66 DLVIVAVPIEATEEVLKELAPHLKKGA-IVTD 96 (279)
T ss_pred CEEEEeccHHHHHHHHHHhcccCCCCC-EEEe
Confidence 999999888888889999888888854 4444
No 384
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.57 E-value=4.2 Score=32.99 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=46.4
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
...+|+-+||| .|......+.... -++++.+|.+. ...+.+.+.+.+.+..-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 45789999996 3333333333333 47888886543 345666777776664444555554
Q ss_pred chh-HHHHHHHhcccCCCCeeEEEEcCC
Q 026461 130 EAL-SVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 130 d~~-~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
... +.+..+ ...+|+|+...+
T Consensus 99 ~i~~~~~~~~------~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEEL------IAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHHH------HhCCCEEEEcCC
Confidence 442 222333 257999987644
No 385
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=90.52 E-value=2 Score=38.04 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=60.5
Q ss_pred cCCCEEEEEc-cc-ccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHc----CCCCcEEEEe----cchhHHHHH
Q 026461 69 VNAKKTIEIG-VF-TGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLDQ 137 (238)
Q Consensus 69 ~~~~~vLeiG-~G-~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~l~~ 137 (238)
.+..+||-+| +| .|..++.+++.... ..+|+++|.+++.++.+++.+... |. ...++. .+..+.+..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHH
Confidence 3456888887 33 67777777876531 247999999999999888753211 21 112222 122233333
Q ss_pred HHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 138 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+. ....+|+|+.... ....+....++++++|.+++
T Consensus 252 ~t----~g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 252 LT----GGQGFDDVFVFVP---VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred Hh----CCCCCCEEEEcCC---CHHHHHHHHHHhccCCeEEE
Confidence 21 1347998887542 24566777889998775543
No 386
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.38 E-value=4.2 Score=35.25 Aligned_cols=101 Identities=21% Similarity=0.352 Sum_probs=58.2
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec--chhHHHHHHHhccc
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 143 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~l~~~~~~~~ 143 (238)
...+..+||-+|+| .|..+..+++... ...|++++.+++..+.+++ .|....+..... +..+.+..+.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---- 250 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---- 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence 34456788888764 3445555666654 3358889988887776643 354222222222 2222222221
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccC-CCeEEEEe
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD 180 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~ 180 (238)
.+.+|+|+-... ....+...++.|+ ++|.++.-
T Consensus 251 -~~~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 -DGGVDYAFEVIG---SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -CCCCcEEEECCC---CHHHHHHHHHHhccCCCEEEEE
Confidence 357999884321 2345667788899 99988864
No 387
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=90.29 E-value=4.5 Score=34.82 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=55.9
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh---HHHHHHHhcccCC
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENE 145 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~l~~~~~~~~~~ 145 (238)
++.+||-.|+| .|..+..+|.... ..+|++++.+++..+.++ +.|...-+.....+.. ..+.... ..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~~ 247 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----GG 247 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----CC
Confidence 55678888764 3444556666654 238999998877666554 3354221222111111 1222221 13
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
..+|+|+-.... ...+...++.|+++|.++.-
T Consensus 248 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 248 RGADVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 579988854321 34566778899999988853
No 388
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=90.23 E-value=4.1 Score=36.48 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=61.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH---cCC-----CCcEEEEecchhHHHHHHHhc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY 141 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~v~~~~~d~~~~l~~~~~~ 141 (238)
++.+|--||. |+.+..+|..+..+.+|+++|++++.++..++-..- .++ ..++.+ ..+. +.
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~~------- 73 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-EK------- 73 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-HH-------
Confidence 3466777766 778877777776567899999999988876521100 000 011111 1111 11
Q ss_pred ccCCCCeeEEEEcCCc-------cchHHH---HHHHHhccCCCeEEEEeccccCcc
Q 026461 142 SENEGSFDYAFVDADK-------DNYCNY---HERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~~-------~~~~~~---~~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
...-|++|+.-+. .+.... .+.+.+.|++|.+++......+|.
T Consensus 74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC 126 (425)
T ss_pred ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence 1467888875321 122222 345667889988888877776553
No 389
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.12 E-value=4.3 Score=34.58 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
......+||-.|+| .|..+..+++.. +.+++.++.+++..+.+++ .|...-+.....+..+.+..+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~------- 226 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL------- 226 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------
Confidence 34456788888854 444555666665 4579999998887776643 353211222222222222222
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
..+|+++-... ....+...++.|+++|.++.
T Consensus 227 ~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 227 GGAKLILATAP---NAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred CCCCEEEECCC---chHHHHHHHHHcccCCEEEE
Confidence 46898884221 23466777889999998875
No 390
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.07 E-value=7.5 Score=32.08 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=81.5
Q ss_pred cCcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 53 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
.+.......+...-+.++... |..-+|+=..+..+.+ .+-++..+|+.|+-....+++|. -..++++..+|..
T Consensus 72 ~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR---~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~ 144 (279)
T COG2961 72 DLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLR---EQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGF 144 (279)
T ss_pred CchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcc---hhceeeeeecCccHHHHHHHHhC---CCcceEEEecCcH
Confidence 344566677776666655544 7777777777666665 36799999999999999999886 2467999999998
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCc---cchHHHHHHHHhccC--CCeEEEE
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLK--VGGIAVY 179 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~---~~~~~~~~~~~~~L~--~gG~lv~ 179 (238)
..+.... ++.+.--+|+||.+- .+|...++.+.+.++ ++|+.++
T Consensus 145 ~~l~a~L---PP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 145 LALKAHL---PPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred HHHhhhC---CCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 8765543 335678899999763 345555555554443 4566665
No 391
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=90.07 E-value=4.3 Score=35.12 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=56.3
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.+..+||-.|+| .|..+..+++... ...+++++.+++..+.+++ .+...-+.....+..+.+.... ....
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~ 256 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGRG 256 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCCC
Confidence 456677777664 5556666777654 2349999888877666543 3432111111122222222221 1357
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+|+|+-.... ...+..++++|+++|.++.
T Consensus 257 ~d~vld~vg~---~~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 257 VDVVVEALGK---PETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCEEEEeCCC---HHHHHHHHHHHhcCCEEEE
Confidence 9999843221 1356777899999998775
No 392
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.99 E-value=5.7 Score=33.91 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecch---hHHHHHHHhc
Q 026461 67 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKY 141 (238)
Q Consensus 67 ~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~l~~~~~~ 141 (238)
...++.+||-.|+|. |..+..+|+... .+ |+.++.+++..+.+++ .+...-+.....+. .+.+....
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~-- 230 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL-- 230 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh--
Confidence 345667887777654 666777787754 44 8899888877666644 24322122221121 12222221
Q ss_pred ccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 142 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 142 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
....+|+|+-.... ...+...++.|+++|.++.
T Consensus 231 --~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 231 --GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred --CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence 13569998864332 2356677889999998875
No 393
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.94 E-value=1.3 Score=37.82 Aligned_cols=35 Identities=6% Similarity=0.029 Sum_probs=26.5
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.+.+|+||+--......+.++.+.+++++++.++.
T Consensus 70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 36899999876555567777888888888886653
No 394
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=89.94 E-value=5.9 Score=29.45 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=52.6
Q ss_pred EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCC----C-cEEEEecchhHHHHHHHhcccCCCC
Q 026461 74 TIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD----H-KINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 74 vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~-~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
|+-+|+ |..+..+|..+ ..+.+|+.+...+ .++..++ .++. . ...+............ ...
T Consensus 1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 67 (151)
T PF02558_consen 1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE----QGLTITGPDGDETVQPPIVISAPSAD------AGP 67 (151)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH----HCEEEEETTEEEEEEEEEEESSHGHH------HST
T ss_pred CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh----eeEEEEecccceecccccccCcchhc------cCC
Confidence 455666 55555555544 1267899999877 5554332 2321 1 0111110000011011 489
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
||+||+--......+.++.+.+.+.++..+++
T Consensus 68 ~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 68 YDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp ESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred CcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 99999987666778889999999999865554
No 395
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.83 E-value=5.2 Score=35.32 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=55.2
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc---CC-----CCcEEEEe-cchhHHHHHHHhccc
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIE-SEALSVLDQLLKYSE 143 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~v~~~~-~d~~~~l~~~~~~~~ 143 (238)
+|--||+ |+.+..+|..+..+.+|+++|++++.++..++..... ++ ..+.++.. .+..+.
T Consensus 2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~--------- 70 (388)
T PRK15057 2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA--------- 70 (388)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------
Confidence 3555666 5555555544433567999999999988876522100 00 01122221 111111
Q ss_pred CCCCeeEEEEcCCcc-----------chHHHHHHHHhccCCCeEEEEeccccCcc
Q 026461 144 NEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGGT 187 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 187 (238)
...-|+|++.-+.. ......+.+.+ +++|.++|......+|.
T Consensus 71 -~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 71 -YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF 123 (388)
T ss_pred -hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence 24568998763321 12334455555 68888888777776553
No 396
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=3.1 Score=37.56 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=72.6
Q ss_pred CCCEEEEEcc-cccH------HHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHHcC-C-CCcEEEE----ecchhHHH
Q 026461 70 NAKKTIEIGV-FTGY------SLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAG-V-DHKINFI----ESEALSVL 135 (238)
Q Consensus 70 ~~~~vLeiG~-G~G~------~t~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~-~-~~~v~~~----~~d~~~~l 135 (238)
+|-.|.=+|. |.|- .+.||.+.-- ..-+.++|.-. .++++.+-+.++.. + ..-|.++ -.|+..+.
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkf-rVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKF-RVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCc-eEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 3444555554 2343 3455655322 23456777543 46676665555431 0 1123322 11222111
Q ss_pred HHHHhcccCCCCeeEEEEcC--Ccc---chHHHHHHHHhccCCCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHH
Q 026461 136 DQLLKYSENEGSFDYAFVDA--DKD---NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL 210 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~--~~~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (238)
.+.-+. ...+.||+|++|- ..+ ....-+..+.+.-+|+=+|.+..++.+.. ....+..|
T Consensus 456 k~AI~~-a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~d---------------sv~q~~~f 519 (587)
T KOG0781|consen 456 KEAIQE-ARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGND---------------SVDQLKKF 519 (587)
T ss_pred HHHHHH-HHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcH---------------HHHHHHHH
Confidence 110000 1258999999993 233 34455566667888999999888775332 66679999
Q ss_pred HHHhhcCC
Q 026461 211 NRSLADDP 218 (238)
Q Consensus 211 ~~~l~~~~ 218 (238)
++.+..++
T Consensus 520 n~al~~~~ 527 (587)
T KOG0781|consen 520 NRALADHS 527 (587)
T ss_pred HHHHhcCC
Confidence 99999987
No 397
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.76 E-value=7.8 Score=33.05 Aligned_cols=98 Identities=20% Similarity=0.175 Sum_probs=55.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
.++.+||-.|+| .|..+..+++... ..+|++++-+++..+.+++ .|...-+.....+.. .+..+. ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCC
Confidence 355677776664 2556666777653 2278888777666555543 343211111122222 222221 1357
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+|+|+-... ....+..+.+.|+++|.++.
T Consensus 232 vd~vld~~g---~~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 232 VDVVLEMSG---NPKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCEEEECCC---CHHHHHHHHHHhccCCEEEE
Confidence 999986432 13445667888999998875
No 398
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=89.73 E-value=3.8 Score=35.79 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=56.3
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec---chhHHHHHHHhccc
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSE 143 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~l~~~~~~~~ 143 (238)
.....+||-.|+| .|..++.+|.... ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~---- 271 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT---- 271 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----
Confidence 3455677777764 3444455666653 3379999988875555443 354221221111 2222222321
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
....+|+|+ |.. ......+....+.|+++|.++.-
T Consensus 272 ~g~gvDvvl-d~~-g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 KGWGADIQV-EAA-GAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCCEEE-ECC-CCcHHHHHHHHHHHHcCCEEEEE
Confidence 135699887 432 12234567778889999988753
No 399
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.68 E-value=4.7 Score=36.05 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=59.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCC
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS 147 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~ 147 (238)
.++|+-+|+ |..+..+++.+.. +..|+.+|.+++.++..++.. ..+.++.+|+.+. +... .-..
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~ 297 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE 297 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence 568999988 7777777776643 568999999999887766542 2367888888653 3332 2468
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
+|.|++-.......-....+.+.+.+.-+++
T Consensus 298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 298 ADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 8888875432222222223334555543433
No 400
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.64 E-value=9.1 Score=30.53 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=48.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE 145 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~ 145 (238)
+.++||-.|++ |..+..+++.+. .+.+|++++.+++..+...+.+... .++.++.+|..+. +..+.+. ....
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45789999974 555666665542 3568999999887666554444332 2577888876532 1111110 0012
Q ss_pred CCeeEEEEcC
Q 026461 146 GSFDYAFVDA 155 (238)
Q Consensus 146 ~~fD~V~~d~ 155 (238)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 5678888764
No 401
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.57 E-value=2.6 Score=35.83 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=56.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
+..+||-.|+|. |..+..+++... ..++++++.+++..+.+++ .+.. .++..+... +..+.. ..+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCCc
Confidence 567888888764 566677777653 2378999988877665543 2431 222221111 112211 13469
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
|+++-.... ...++.+++.|+++|.++.
T Consensus 233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 233 DVVFEASGA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred cEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 999864321 3456777899999998875
No 402
>PLN02256 arogenate dehydrogenase
Probab=89.50 E-value=4.2 Score=34.63 Aligned_cols=93 Identities=18% Similarity=0.086 Sum_probs=52.8
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 66 LRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
.......+|.-||+ |..+..++..+.. +.+|+++|.++. .+.+. ..|. .. ..+..+.+
T Consensus 31 ~~~~~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~----~~gv----~~-~~~~~e~~--------- 89 (304)
T PLN02256 31 LEKSRKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIAA----ELGV----SF-FRDPDDFC--------- 89 (304)
T ss_pred hccCCCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHHH----HcCC----ee-eCCHHHHh---------
Confidence 33445668999997 5555555554432 358999998863 22222 2332 22 22322221
Q ss_pred CCCeeEEEEcCCccchHHHHHHH-HhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKDNYCNYHERL-MKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~-~~~L~~gG~lv~~ 180 (238)
....|+|++..+.......++.+ ...++++. +++|
T Consensus 90 ~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~-iviD 125 (304)
T PLN02256 90 EEHPDVVLLCTSILSTEAVLRSLPLQRLKRST-LFVD 125 (304)
T ss_pred hCCCCEEEEecCHHHHHHHHHhhhhhccCCCC-EEEe
Confidence 13579999877666667777776 45677765 4443
No 403
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.50 E-value=6.4 Score=33.51 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=58.6
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
....+..+||-.|+|. |..+..+|.... ...+++++.+++..+.++ ..+...-+...... .+.+.... .
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~ 224 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----E 224 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----C
Confidence 3344566888888754 667777777654 224899988877665553 33432112222112 22222221 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
...+|+++-... ....+..++++|+++|.++.-
T Consensus 225 ~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 225 GRGADLVIEAAG---SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 345999985421 234566778899999987753
No 404
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=89.48 E-value=0.89 Score=36.75 Aligned_cols=62 Identities=11% Similarity=-0.025 Sum_probs=47.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 133 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (238)
.....-|.|||.|.|+.|..+.++- ..++..+|.++.++.-.+-..+.+. .+..+.++|++.
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 3345679999999999999999753 4689999999988887765544333 467778888764
No 405
>PRK10083 putative oxidoreductase; Provisional
Probab=89.36 E-value=4.6 Score=34.33 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=53.4
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
...+..+||-.|+| .|..++.+++. ++ ...+++++.+++..+.+++. |...-+.....+..+.+.. .
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~---~--- 225 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEE---K--- 225 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhc---C---
Confidence 34456688888854 33344445554 23 34688899988877766543 5422122222122222211 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
...+|+||--.. ....+...++.|+++|.++.
T Consensus 226 g~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 226 GIKPTLIIDAAC---HPSILEEAVTLASPAARIVL 257 (339)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEE
Confidence 223455553222 13456677889999998876
No 406
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=89.16 E-value=9.5 Score=32.51 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=56.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
.++.+||-.|+| .|..++.++.... .+ |++++-+++..+.+++ .+...-+.....+..+.+..+. +..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence 345667666654 4555666777653 44 8888777766655543 2432112222223333333331 135
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+|+|+-.... ...+..+++.|+++|.++.-
T Consensus 230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 79999864321 34566778899999987763
No 407
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.10 E-value=1.9 Score=35.89 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=42.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (238)
.+...++|.|||.|..+.+++..++ +...++.||....... +-..+........++=+..|+.++
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeecc
Confidence 3556899999999999999999884 2578999998664432 333333332112344455566553
No 408
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.06 E-value=5.6 Score=31.53 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=47.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEe
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE 128 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 128 (238)
...+|+-+|||. .+..+++.+ ..-++++.+|.+. ...+.+.+.+++.+..-+++...
T Consensus 20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 457899999864 444444433 2147899998653 23455666777666544555555
Q ss_pred cchhHHHHHHHhcccCCCCeeEEEEcCC
Q 026461 129 SEALSVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 129 ~d~~~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
....+..+.+ ...||+|+....
T Consensus 98 ~~~~~~~~~~------~~~~dvVi~~~~ 119 (197)
T cd01492 98 DDISEKPEEF------FSQFDVVVATEL 119 (197)
T ss_pred cCccccHHHH------HhCCCEEEECCC
Confidence 4443333333 368999997644
No 409
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.06 E-value=7.1 Score=32.10 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=45.7
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
...+|+-+||| .|......+.... -++++-+|.+. ..++.+++.+.+.+..-+++.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 56789999996 3443333333333 47888888643 234555666666554444555544
Q ss_pred chhH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461 130 EALS-VLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
...+ ..+.+ -..||+|+...+
T Consensus 110 ~i~~~~~~~~------~~~~DiVi~~~D 131 (245)
T PRK05690 110 RLDDDELAAL------IAGHDLVLDCTD 131 (245)
T ss_pred cCCHHHHHHH------HhcCCEEEecCC
Confidence 4322 22333 368999886544
No 410
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.05 E-value=2.3 Score=35.86 Aligned_cols=91 Identities=11% Similarity=0.048 Sum_probs=50.9
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE------ecchhHHHHHHHhcccCC
Q 026461 73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI------ESEALSVLDQLLKYSENE 145 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~------~~d~~~~l~~~~~~~~~~ 145 (238)
+|+-||+|.-+.+ ++..+. .+..|+.++. ++.++..++ .++. ++.. ........... .
T Consensus 2 kI~IiG~G~iG~~--~a~~L~~~g~~V~~~~r-~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~------~ 66 (305)
T PRK12921 2 RIAVVGAGAVGGT--FGGRLLEAGRDVTFLVR-PKRAKALRE----RGLV--IRSDHGDAVVPGPVITDPEEL------T 66 (305)
T ss_pred eEEEECCCHHHHH--HHHHHHHCCCceEEEec-HHHHHHHHh----CCeE--EEeCCCeEEecceeecCHHHc------c
Confidence 5788888644433 232221 1457899988 555554332 2321 1111 10011111111 3
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
..+|+||+..........++.+.+.+.++.+++
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii 99 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVII 99 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEE
Confidence 689999998766677888888888888877665
No 411
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=88.98 E-value=0.34 Score=42.67 Aligned_cols=65 Identities=22% Similarity=0.121 Sum_probs=56.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-EEEEecchhHHHH
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD 136 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~ 136 (238)
..+..|.|+.||.|-.++..+.. ..+|++-|.+++++++.+.++..+-+.+. +++...|+.+.+.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 35668999999999999998875 57999999999999999999988777755 9999999988774
No 412
>PRK08324 short chain dehydrogenase; Validated
Probab=88.63 E-value=7.1 Score=37.16 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=48.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS 142 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~ 142 (238)
..++||-.|+ +|..+..++..+. .+.+|+.++.+++..+.+.+.+... .++.++.+|..+. +......
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~- 495 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA- 495 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence 3467888885 3455555555442 2568999999988776665554332 3577777776431 2222111
Q ss_pred cCCCCeeEEEEcCC
Q 026461 143 ENEGSFDYAFVDAD 156 (238)
Q Consensus 143 ~~~~~fD~V~~d~~ 156 (238)
.+++|+|+..+.
T Consensus 496 --~g~iDvvI~~AG 507 (681)
T PRK08324 496 --FGGVDIVVSNAG 507 (681)
T ss_pred --cCCCCEEEECCC
Confidence 357999987754
No 413
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.55 E-value=3.2 Score=35.02 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG 146 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~ 146 (238)
+.++||-.| |+|..+.++++.+-. +.+|++++.++.............+..++++++.+|..+. +... -.
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~ 75 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD 75 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence 356788888 478888888877632 4578888877654332322221122234688999988752 3333 24
Q ss_pred CeeEEEEcC
Q 026461 147 SFDYAFVDA 155 (238)
Q Consensus 147 ~fD~V~~d~ 155 (238)
.+|.||..+
T Consensus 76 ~~d~Vih~A 84 (322)
T PLN02662 76 GCEGVFHTA 84 (322)
T ss_pred CCCEEEEeC
Confidence 689888764
No 414
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.54 E-value=2.7 Score=37.78 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=49.4
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
+|.-|| |.|..+.+++..+.. +.+|++++.+++..... ....|. .+ ..+..+. ....|+|
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~----------~~~aDvV 62 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA----------AKDADIV 62 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH----------hccCCEE
Confidence 567776 345666666655432 35799999887654222 222232 21 1122111 2456888
Q ss_pred EEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 152 FVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 152 ~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
++..+.......++.+.+.+++|.+++
T Consensus 63 Ilavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 63 IISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 887666666677777777777765433
No 415
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=88.49 E-value=7.2 Score=34.35 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCc-EEEEecchhHHHH
Q 026461 58 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD 136 (238)
Q Consensus 58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~ 136 (238)
.+-+|..+........||-++=..|..+.+++..-+ +.+--+--.-...++|+..+++... ++++.. .+.+
T Consensus 32 de~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~~- 103 (378)
T PRK15001 32 DEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDS--TADY- 103 (378)
T ss_pred HHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeecc--cccc-
Confidence 444555555433223799999999999999995432 2221112233456788888887643 555533 2222
Q ss_pred HHHhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEEe
Q 026461 137 QLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 137 ~~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+.+|+|++--++. .....+..+...|.+|+.|++-
T Consensus 104 --------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 104 --------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred --------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 46799999876543 3456677778899999997763
No 416
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.31 E-value=5.4 Score=33.49 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=54.7
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHc--------CCC---------CcEEEEecchhHH
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV 134 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 134 (238)
++|.-||+|.=+.++..+-... +.+|+.+|.+++.++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 5788899864443333222212 568999999999888887654321 110 123222 222211
Q ss_pred HHHHHhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEEE
Q 026461 135 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv~ 179 (238)
-..-|+|+...+.. .....++.+.+.++++.+|+.
T Consensus 82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 24668888765422 345667777777777665543
No 417
>PRK08507 prephenate dehydrogenase; Validated
Probab=88.23 E-value=2.3 Score=35.46 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred EEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCee
Q 026461 73 KTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 149 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD 149 (238)
+|.-||+ |..+..++..+... .+|+++|.+++..+.+.+ .|... .. .+. .+. ...|
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~---~~-~~~----~~~-------~~aD 60 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD---EI-VSF----EEL-------KKCD 60 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc---cc-CCH----HHH-------hcCC
Confidence 4666776 55555555544322 379999999887666542 34311 11 121 122 1379
Q ss_pred EEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 150 YAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
+||+.-+.......+..+.+ ++++.+++
T Consensus 61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 61 VIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 99998877777788888877 77766444
No 418
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.15 E-value=6.6 Score=33.30 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=52.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
.+++|+-||.|. |......+..+ +.+|+.+|.++...+.++ ..|. ++.. . +.+.+. -..+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~~--~-~~l~~~------l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPFH--L-SELAEE------VGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eeec--H-HHHHHH------hCCC
Confidence 578999999963 33333444444 469999999977555443 2342 2221 1 222232 3689
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEecccc
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
|+||.-.+. .-.-+...+.+++|++++ |-...
T Consensus 212 DiVI~t~p~---~~i~~~~l~~~~~g~vII-Dla~~ 243 (296)
T PRK08306 212 DIIFNTIPA---LVLTKEVLSKMPPEALII-DLASK 243 (296)
T ss_pred CEEEECCCh---hhhhHHHHHcCCCCcEEE-EEccC
Confidence 999985432 112345567788876544 43333
No 419
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.12 E-value=8.8 Score=28.39 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=42.1
Q ss_pred EEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 73 KTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
+|+-+||| ..+..++..+. .-++++.+|.+. ...+.+++.+.+.+..-+++......
T Consensus 1 ~VliiG~G--glGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVGLG--GLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI 78 (143)
T ss_pred CEEEECCC--HHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 47888985 44444343331 136889998752 23455566666655333455454443
Q ss_pred hHH-HHHHHhcccCCCCeeEEEEcCCc
Q 026461 132 LSV-LDQLLKYSENEGSFDYAFVDADK 157 (238)
Q Consensus 132 ~~~-l~~~~~~~~~~~~fD~V~~d~~~ 157 (238)
... ...+ ...+|+|+.....
T Consensus 79 ~~~~~~~~------~~~~diVi~~~d~ 99 (143)
T cd01483 79 SEDNLDDF------LDGVDLVIDAIDN 99 (143)
T ss_pred ChhhHHHH------hcCCCEEEECCCC
Confidence 322 1222 3689999876543
No 420
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.92 E-value=6.9 Score=32.14 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=57.4
Q ss_pred HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 66 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
....++.+||-.|+|. |..++.+|.... ..+|++++.+++..+.+++. |..+.+ .... ... . .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~---~-----~ 156 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEAL----GPADPV--AADT-ADE---I-----G 156 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhh---h-----c
Confidence 3445667888888764 666777777764 22499999988877765542 311111 1110 011 1 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
...+|+|+-.... ...+....+.|+++|.++.
T Consensus 157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 3579988854322 3356677888999998774
No 421
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.88 E-value=7.1 Score=33.07 Aligned_cols=95 Identities=20% Similarity=0.101 Sum_probs=52.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHc-CC----------CCcEEEEecchhHHHHHH
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKA-GV----------DHKINFIESEALSVLDQL 138 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~-~~----------~~~v~~~~~d~~~~l~~~ 138 (238)
-++|.-||+|. .+..++..+. .+.+|+.+|.+++.++.+++.+... +. ..++++. .|..+.
T Consensus 4 ~~~I~vIGaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---- 76 (311)
T PRK06130 4 IQNLAIIGAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA---- 76 (311)
T ss_pred ccEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH----
Confidence 35788898864 3333333221 1458999999999888877653221 10 0112221 122111
Q ss_pred HhcccCCCCeeEEEEcCCcc--chHHHHHHHHhccCCCeEEE
Q 026461 139 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 139 ~~~~~~~~~fD~V~~d~~~~--~~~~~~~~~~~~L~~gG~lv 178 (238)
....|+|+..-... .....+..+.+.++++.+++
T Consensus 77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 24679998875433 24567777767666655443
No 422
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=87.85 E-value=5.6 Score=34.37 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=58.0
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
...++.+||-.|+| .|..++.++.... ..+|++++.++...+.+++ .|...-+.....+..+.+..+. ..
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~----~~ 249 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT----DG 249 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc----CC
Confidence 34456788888764 4666677777654 2358999888877665542 3432111111112222232321 13
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
..+|+++-.... ...+..+++.|+++|.++.
T Consensus 250 ~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 250 RGADYAFEAVGR---AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEE
Confidence 569987743221 3456777889999998775
No 423
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.83 E-value=9 Score=31.74 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=50.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCee
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD 149 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~fD 149 (238)
+.+|-.|+ |..+..+++.+..+.+|+.++.+++..+...+.+...+ .++.++.+|..+. +..+.+.-...+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45565664 56888888887656889999998876666655554433 3577777776432 111111100136799
Q ss_pred EEEEcCC
Q 026461 150 YAFVDAD 156 (238)
Q Consensus 150 ~V~~d~~ 156 (238)
.++..+.
T Consensus 79 ~li~nAG 85 (275)
T PRK06940 79 GLVHTAG 85 (275)
T ss_pred EEEECCC
Confidence 9988754
No 424
>PRK08114 cystathionine beta-lyase; Provisional
Probab=87.83 E-value=14 Score=32.77 Aligned_cols=127 Identities=10% Similarity=0.074 Sum_probs=73.2
Q ss_pred CcHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHHcCCCCcEEEEecchh
Q 026461 54 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL 132 (238)
Q Consensus 54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (238)
-.|....+-..++.+......+-..+|.+.....+...+.++.+|++.+. -.......++.+++.|. ++.++.....
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~ 137 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG 137 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence 44555666666666667778888888777777655555665778887653 33445556666777675 3666543222
Q ss_pred HHHHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccC---CCeEEEEeccccCcc
Q 026461 133 SVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK---VGGIAVYDNTLWGGT 187 (238)
Q Consensus 133 ~~l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~---~gG~lv~~~~~~~g~ 187 (238)
+.++... ...-.+|++...... ....++.+.+..+ +|-.+++|++...+.
T Consensus 138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~ 192 (395)
T PRK08114 138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV 192 (395)
T ss_pred HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 3333321 234579998753211 1223344444333 356788888775443
No 425
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=87.82 E-value=6.1 Score=33.67 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
++.+||-.|+|. |..++.+++... ..+|++++.+++..+.+++ .|...-+.....+..+.+..+. ....+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~ 233 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGF 233 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCC
Confidence 456777777653 556677777654 2368888777766655443 3532211112222223333331 13578
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEec
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
|+||-... ....+..+.+.|+++|.++.-.
T Consensus 234 d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 234 DVGLEMSG---APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence 98875322 2345666778899999887743
No 426
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.79 E-value=9.2 Score=33.14 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCcEEEE
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINFI 127 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~~ 127 (238)
...+|+-+|||. |......+.... -++++.+|.+. ...+.+++.+.+.+-.-+++..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 457899999962 333332222222 47899999863 2345556666665533345555
Q ss_pred ecchhH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461 128 ESEALS-VLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 128 ~~d~~~-~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
..+... .+..+ -..||+|+.-..
T Consensus 102 ~~~~~~~~~~~~------~~~~DlVid~~D 125 (339)
T PRK07688 102 VQDVTAEELEEL------VTGVDLIIDATD 125 (339)
T ss_pred eccCCHHHHHHH------HcCCCEEEEcCC
Confidence 555432 22233 267999886533
No 427
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=87.57 E-value=0.56 Score=37.76 Aligned_cols=102 Identities=7% Similarity=-0.020 Sum_probs=64.6
Q ss_pred cHhHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH
Q 026461 55 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 134 (238)
Q Consensus 55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (238)
.-...+.+..+. ..+....+|..-|.|..|..+++..+ +.++.++|.+|-+.+.|...... -+..++.-+.++..++
T Consensus 29 PVm~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~e-l~~~~l~a~Lg~Fs~~ 105 (303)
T KOG2782|consen 29 PVMLDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDE-LMHPTLKAVLGNFSYI 105 (303)
T ss_pred ceehhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHh-hcchhHHHHHhhhHHH
Confidence 334455555443 44677899999999999999999987 78899999999988888766532 1222222233333222
Q ss_pred HHHHHhcccCCCCeeEEEEcCCccc
Q 026461 135 LDQLLKYSENEGSFDYAFVDADKDN 159 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~~~~~ 159 (238)
..-+.+-+-...++|=|++|-.++.
T Consensus 106 ~~l~~~~gl~~~~vDGiLmDlGcSS 130 (303)
T KOG2782|consen 106 KSLIADTGLLDVGVDGILMDLGCSS 130 (303)
T ss_pred HHHHHHhCCCcCCcceEEeecCccc
Confidence 1111111223578999998865443
No 428
>PLN02494 adenosylhomocysteinase
Probab=87.50 E-value=4.7 Score=36.50 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=53.9
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...++|+-+|+| .|......+..+ +.+|+.+|.++.....+.. .|+ .+. +..+.+ ..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal----------~~ 309 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV----------SE 309 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH----------hh
Confidence 346899999997 444555555555 4689999999876544432 132 222 222222 45
Q ss_pred eeEEEEcCCccchHHH-HHHHHhccCCCeEEEEe
Q 026461 148 FDYAFVDADKDNYCNY-HERLMKLLKVGGIAVYD 180 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~-~~~~~~~L~~gG~lv~~ 180 (238)
.|+|+..... ... ....+..+++||+|+--
T Consensus 310 ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 310 ADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred CCEEEECCCC---ccchHHHHHhcCCCCCEEEEc
Confidence 7999874322 232 35667899999998854
No 429
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.48 E-value=8.3 Score=29.64 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=53.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-HHHhcccCCCCe
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~~~~~f 148 (238)
...+|+=|||=+-+..+.- ...+..+++.+|++........+ ...+...+....++ .+ .++|
T Consensus 25 ~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~~~---------~F~fyD~~~p~~~~~~l------~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFGGD---------EFVFYDYNEPEELPEEL------KGKF 87 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcCCc---------ceEECCCCChhhhhhhc------CCCc
Confidence 4578999999544443332 12336789999999775442211 12333333333333 33 5799
Q ss_pred eEEEEcCCccchHHH----HHHHHhccCCCeEEEEe
Q 026461 149 DYAFVDADKDNYCNY----HERLMKLLKVGGIAVYD 180 (238)
Q Consensus 149 D~V~~d~~~~~~~~~----~~~~~~~L~~gG~lv~~ 180 (238)
|+|++|.+- ...+. ...+.-++++++.+++.
T Consensus 88 d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 88 DVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred eEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 999999764 22333 34444456777777753
No 430
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.46 E-value=15 Score=31.45 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=51.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE 145 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~ 145 (238)
..+.||-.|+ +|..+..+++.+. .+.+|+.++.+++.++...+.+...+ .++.++.+|..+. +....+. ....
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4567888885 4555566655442 35789999998887777776666554 3577788886432 1211110 0013
Q ss_pred CCeeEEEEcCC
Q 026461 146 GSFDYAFVDAD 156 (238)
Q Consensus 146 ~~fD~V~~d~~ 156 (238)
+++|+++..+.
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 68999987653
No 431
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.40 E-value=3.7 Score=35.12 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=54.5
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHH---HH---HcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPI---IK---KAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~---~~---~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
+|.-||+ |..+..++..+.. +..|+.++.+++.++..++. .. ...+..++.+. .|..+. . .
T Consensus 2 kI~IiGa--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~------~ 69 (326)
T PRK14620 2 KISILGA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV---L------S 69 (326)
T ss_pred EEEEECc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH---H------h
Confidence 4777888 4555554544322 35799999887766655542 11 00111122222 222222 1 2
Q ss_pred CCeeEEEEcCCccchHHHHHHHHh-ccCCCeEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAV 178 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~-~L~~gG~lv 178 (238)
+..|+||+--......+.++.+.+ .++++..++
T Consensus 70 ~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv 103 (326)
T PRK14620 70 DNATCIILAVPTQQLRTICQQLQDCHLKKNTPIL 103 (326)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 578999998777777888888887 888776443
No 432
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=87.23 E-value=9.6 Score=32.60 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=55.7
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEec---chhHHHHHHHhcccCC
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE 145 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~l~~~~~~~~~~ 145 (238)
++.+||-.|+| .|..+..+|+... ..+|++++.+++..+.+++ .|.. .++.. +..+.+.... .
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~ 241 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G 241 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence 45678888764 4555566777654 3378999988877766643 3542 22222 1122222221 2
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+.+|+++-... ....+..+++.|+++|.++.
T Consensus 242 ~~~d~vid~~g---~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 242 GGVDAVIDFVN---NSATASLAFDILAKGGKLVL 272 (350)
T ss_pred CCCcEEEECCC---CHHHHHHHHHHhhcCCeEEE
Confidence 37999984322 13456777889999998875
No 433
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.17 E-value=5.8 Score=35.25 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=54.4
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 69 ~~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
...++|+-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. +..+. + ..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea---l-------~~ 250 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA---A-------KI 250 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH---H-------hc
Confidence 3678999999973 55555555554 4789999999875444432 232 222 22222 1 35
Q ss_pred eeEEEEcCCccchHHHHH-HHHhccCCCeEEEEec
Q 026461 148 FDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDN 181 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~~ 181 (238)
.|+|+.... ....+. .....+++|++++.-.
T Consensus 251 aDVVItaTG---~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 251 GDIFITATG---NKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CCEEEECCC---CHHHHHHHHHhcCCCCcEEEEEC
Confidence 699876432 344454 3668899999888643
No 434
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.13 E-value=7.2 Score=34.82 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=57.2
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCee
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD 149 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~fD 149 (238)
+|+-+|+ |..+..+++.+.. +..|+.+|.+++.++.+++. ..+.++.+|+.+. +... ....+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~-----~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREA-----GAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence 5777776 8888888887642 46899999999887766542 1377888887653 3322 146789
Q ss_pred EEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 150 YAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 150 ~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
.|++..........+....+.+.+.-.++
T Consensus 68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 68 LLIAVTDSDETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred EEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence 88876433333333334445553433333
No 435
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.06 E-value=17 Score=32.63 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=53.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
..++|+-+|+| .|......+..+ +.+|+.+|.++.....+.. .|. ++. +..+. ....
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea----------l~~a 268 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TMEEA----------AELG 268 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHHHH----------HhCC
Confidence 67899999997 343444445544 4689999999876544432 132 222 22222 2468
Q ss_pred eEEEEcCCccchHHHHH-HHHhccCCCeEEEEec
Q 026461 149 DYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDN 181 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~~ 181 (238)
|+|+.... ....+. .....+|+|++++.-.
T Consensus 269 DVVI~aTG---~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 269 DIFVTATG---NKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CEEEECCC---CHHHHHHHHHhcCCCCCEEEEcC
Confidence 99876432 244554 5668899998887643
No 436
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=87.04 E-value=11 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=22.8
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCc
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNR 105 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~ 105 (238)
++|.-|| |.|..+.+++..+.. +..|+++|.++
T Consensus 99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 5788888 346777776666542 35799999764
No 437
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.02 E-value=3.7 Score=35.51 Aligned_cols=100 Identities=10% Similarity=-0.051 Sum_probs=57.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-HcCCC------CcEEEEecchhHHHHHHHhcc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVD------HKINFIESEALSVLDQLLKYS 142 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~------~~v~~~~~d~~~~l~~~~~~~ 142 (238)
...+|.-||+|.-. ..++..+...+.++....+++.++..++.-. ...+. .++.+ ..|..+.
T Consensus 6 ~~mkI~IiGaGa~G--~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a-------- 74 (341)
T PRK12439 6 REPKVVVLGGGSWG--TTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA-------- 74 (341)
T ss_pred CCCeEEEECCCHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH--------
Confidence 34679999996444 3334333324467777788877666654310 00111 11211 1222211
Q ss_pred cCCCCeeEEEEcCCccchHHHHHHHHhccCCCeE-EEEecc
Q 026461 143 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI-AVYDNT 182 (238)
Q Consensus 143 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~-lv~~~~ 182 (238)
....|+|++--+.......++.+.+.++++.. +.+.+-
T Consensus 75 --~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 75 --ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKG 113 (341)
T ss_pred --HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence 25779999987777788888999888888764 444443
No 438
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=86.94 E-value=2.2 Score=34.77 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=40.4
Q ss_pred cccHHHHH--HHhhCC-CCCEEEEEeCCchh--HHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEc
Q 026461 80 FTGYSLLL--TALTIP-EDGQITAIDVNRET--YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 154 (238)
Q Consensus 80 G~G~~t~~--la~~~~-~~~~v~~iD~~~~~--~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d 154 (238)
|.|-.|.. |+..+. .+.+|.-||-+|.. .++.+.......+++++.+...+-...+....+. .....||+|++|
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvD 90 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVD 90 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEe
Confidence 45655544 444442 36899999988753 4443332223344556777665433333322110 013469999998
Q ss_pred C
Q 026461 155 A 155 (238)
Q Consensus 155 ~ 155 (238)
-
T Consensus 91 l 91 (231)
T PF07015_consen 91 L 91 (231)
T ss_pred C
Confidence 3
No 439
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.90 E-value=4.2 Score=34.36 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=56.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-cc
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SE 143 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~ 143 (238)
...++.||--|.|.|.- ..+|..+ ..+++++..|++++..+...+.+++.| ++....+|..+. +..++++ ..
T Consensus 35 ~v~g~~vLITGgg~GlG-r~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLG-RLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHH-HHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 34556788888887763 4444333 336789999999999998888888775 577777776531 2222211 12
Q ss_pred CCCCeeEEEEcCC
Q 026461 144 NEGSFDYAFVDAD 156 (238)
Q Consensus 144 ~~~~fD~V~~d~~ 156 (238)
+-+..|+++-++.
T Consensus 111 e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 111 EVGDVDILVNNAG 123 (300)
T ss_pred hcCCceEEEeccc
Confidence 3689999987753
No 440
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.88 E-value=15 Score=29.97 Aligned_cols=82 Identities=7% Similarity=-0.003 Sum_probs=45.9
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY 141 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~ 141 (238)
.++.+|-.|.++ +..+..+++.+. .+.+|+.++.+....+..++...... ..++.++.+|..+ .+....++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999763 566666666553 35688888654322222333322221 2357777777653 22222211
Q ss_pred ccCCCCeeEEEEcC
Q 026461 142 SENEGSFDYAFVDA 155 (238)
Q Consensus 142 ~~~~~~fD~V~~d~ 155 (238)
.+++|+++..+
T Consensus 85 ---~g~ld~lv~na 95 (257)
T PRK08594 85 ---VGVIHGVAHCI 95 (257)
T ss_pred ---CCCccEEEECc
Confidence 47899988654
No 441
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.80 E-value=11 Score=30.83 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=48.9
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
...+|+-+||| .|......+.... -++++.+|.+. ...+.+.+.+.+.+..-+++.+..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 45789999997 3444444333333 47888888643 234555666666654444555443
Q ss_pred chhH-HHHHHHhcccCCCCeeEEEEcCCccchHHHHH
Q 026461 130 EALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 165 (238)
Q Consensus 130 d~~~-~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~ 165 (238)
...+ .+..+ -..+|+|+.-.+.......+.
T Consensus 102 ~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~ln 132 (240)
T TIGR02355 102 KLDDAELAAL------IAEHDIVVDCTDNVEVRNQLN 132 (240)
T ss_pred cCCHHHHHHH------hhcCCEEEEcCCCHHHHHHHH
Confidence 3322 23333 368999986544333333333
No 442
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=86.77 E-value=5.2 Score=27.76 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=43.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEE
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 151 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V 151 (238)
++|| +-||+|.+|-.++.. .++.+.+.|++ +++...+..+.... ...+|+|
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~--~~v~a~~~~~~~~~-------~~~~Dvi 54 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP--VKIAAGSYGAAGEK-------LDDADVV 54 (95)
T ss_pred cEEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc--EEEEEecHHHHHhh-------cCCCCEE
Confidence 4555 667888877666643 24555566763 67777776665333 3679999
Q ss_pred EEcCCccchHHHHHHHHhccCCC
Q 026461 152 FVDADKDNYCNYHERLMKLLKVG 174 (238)
Q Consensus 152 ~~d~~~~~~~~~~~~~~~~L~~g 174 (238)
++... ....++.+...+.+-
T Consensus 55 ll~pq---i~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 55 LLAPQ---VAYMLPDLKKETDKK 74 (95)
T ss_pred EECch---HHHHHHHHHHHhhhc
Confidence 98753 344445555444443
No 443
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.76 E-value=13 Score=32.21 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=55.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
+..+||-.|+| .|..++.+|+.. +.++++++.+++....+.+ ..|... .+...+. +.+... ...+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~------~~~~ 245 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA------ADSL 245 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh------cCCC
Confidence 55678877764 455566677765 3578888877765444432 345421 1111121 222222 2468
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
|+||-... ....+..+.+.|+++|.++.-..
T Consensus 246 D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 246 DYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred cEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence 98874332 23456667789999998886443
No 444
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.73 E-value=23 Score=31.72 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=41.5
Q ss_pred CCEEEEEc-ccccHHHHH--HHhhC---CCCCEEEEEeCCchh---HHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhc
Q 026461 71 AKKTIEIG-VFTGYSLLL--TALTI---PEDGQITAIDVNRET---YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 141 (238)
Q Consensus 71 ~~~vLeiG-~G~G~~t~~--la~~~---~~~~~v~~iD~~~~~---~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 141 (238)
++.++=+| +|.|-+|.. ||..+ ..+.+|..++.++.. .+..+.+....++. +.. ..+..++...+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH-
Confidence 34677777 678877643 33332 224578888888753 33444444444542 211 1122222222211
Q ss_pred ccCCCCeeEEEEcC
Q 026461 142 SENEGSFDYAFVDA 155 (238)
Q Consensus 142 ~~~~~~fD~V~~d~ 155 (238)
...+|+|++|.
T Consensus 297 ---~~~~DlVlIDt 307 (424)
T PRK05703 297 ---LRDCDVILIDT 307 (424)
T ss_pred ---hCCCCEEEEeC
Confidence 25799999994
No 445
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.73 E-value=8.4 Score=33.81 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=45.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------chhHHHHHHHHHHcCCCCcEEEEec
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
...+|+-+||| .|......+.... -++++.+|.+ ....+.+.+.+.+.+..-+++....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 55689999996 3443333333333 4789999987 3456666777766553333444433
Q ss_pred chhH-HHHHHHhcccCCCCeeEEEEcC
Q 026461 130 EALS-VLDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 130 d~~~-~l~~~~~~~~~~~~fD~V~~d~ 155 (238)
...+ .+..+ -..+|+|+...
T Consensus 213 ~~~~~~~~~~------~~~~D~Vv~~~ 233 (376)
T PRK08762 213 RVTSDNVEAL------LQDVDVVVDGA 233 (376)
T ss_pred cCChHHHHHH------HhCCCEEEECC
Confidence 3222 22222 25799888643
No 446
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=1.4 Score=36.36 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=69.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-----------CCEEEEEeCCchhHHHHH-------------HHHHH--------
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPE-----------DGQITAIDVNRETYEIGL-------------PIIKK-------- 117 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~-----------~~~v~~iD~~~~~~~~a~-------------~~~~~-------- 117 (238)
..-.|+|+|-|+|...+..-...+. ..++++++.+|-...... +....
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 4457999999999988776655431 245888888774322221 11111
Q ss_pred -----cCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCc--c----chHHHHHHHHhccCCCeEEEE
Q 026461 118 -----AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--D----NYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 118 -----~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~--~----~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.| .-...+..+|+.+.++..... .+.+|..|.|+.. . ...+++..+.+..++||.+.-
T Consensus 138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t 206 (252)
T COG4121 138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT 206 (252)
T ss_pred HHhhhcc-hheeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence 11 124567889998887776211 1279999999631 1 235788888899999999875
No 447
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.64 E-value=9.1 Score=32.07 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=52.5
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCC---CcEEEEecchhHHHHHHHhcccCCCCe
Q 026461 73 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSF 148 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~~~~f 148 (238)
+|+-||+|. .+..++..+. .+.+|+.++.+++.++..++ .++. ..... .......... ...+
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~-------~~~~ 67 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE-------LGPQ 67 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH-------cCCC
Confidence 578888853 3333333332 14589999987766655443 2321 11110 0000111111 2689
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
|+|++--........++.+.+.+.++..++
T Consensus 68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv 97 (304)
T PRK06522 68 DLVILAVKAYQLPAALPSLAPLLGPDTPVL 97 (304)
T ss_pred CEEEEecccccHHHHHHHHhhhcCCCCEEE
Confidence 999998766667888888888888876554
No 448
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.59 E-value=3.9 Score=36.03 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=56.1
Q ss_pred EEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCCeeEEEE-cC----CccchHHHHHHHHhcc
Q 026461 97 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLL 171 (238)
Q Consensus 97 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~-d~----~~~~~~~~~~~~~~~L 171 (238)
+++- +..|..+..-.-..-+.++ +++++.+++..+.+.... .+++|.+++ |+ ......+.++.+.+.+
T Consensus 252 ~Y~~-~~~P~YL~~e~f~~lr~~~-drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~ 324 (380)
T PF11899_consen 252 RYTP-DCCPPYLRPENFEALRARL-DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTA 324 (380)
T ss_pred CCCC-CCCChhhcHhHHHHHhcCC-CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHh
Confidence 3443 5555544322211123455 789999999999988752 689998765 43 2345677888889999
Q ss_pred CCCeEEEEeccccCc
Q 026461 172 KVGGIAVYDNTLWGG 186 (238)
Q Consensus 172 ~~gG~lv~~~~~~~g 186 (238)
+|||.++.-++....
T Consensus 325 ~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 325 RPGARVLWRSAAVPP 339 (380)
T ss_pred CCCCEEEEeeCCCCC
Confidence 999999997766443
No 449
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.55 E-value=6.5 Score=34.56 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=72.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH-------HHHHcCC-CCcEEEEecchhH--HHHH
Q 026461 68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP-------IIKKAGV-DHKINFIESEALS--VLDQ 137 (238)
Q Consensus 68 ~~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~-------~~~~~~~-~~~v~~~~~d~~~--~l~~ 137 (238)
..+.....|+|+|.|......+.... ...=+|+|+.....+.+.. ....+|- .+.++.++++... ....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 55667899999999999888887655 5667899987765544432 2233343 2457888888654 2333
Q ss_pred HHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccCCCeEEEEecccc
Q 026461 138 LLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVYDNTLW 184 (238)
Q Consensus 138 ~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~ 184 (238)
+ ...-++||++....+ ..--+++++..+++|..|+-..-+.
T Consensus 269 I------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 269 I------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred H------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence 3 367789998854322 2223346778889999888766553
No 450
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=86.52 E-value=2.5 Score=35.99 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred CEEEEEcccccHHHHHHHhhCC-------------------CCCEEEEEeCCc--hhHHHHHHHHHHc----------CC
Q 026461 72 KKTIEIGVFTGYSLLLTALTIP-------------------EDGQITAIDVNR--ETYEIGLPIIKKA----------GV 120 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~-------------------~~~~v~~iD~~~--~~~~~a~~~~~~~----------~~ 120 (238)
.+||-||-|.|.=.+.++..+. +...|+.||+-+ ..++.....+... +.
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 5999999999887777776660 124899999954 3444444444332 01
Q ss_pred ----C--CcEEEEecchhHHHH-HHHhcccCCCCeeEEEE--------cCCccchHHHHHHHHhccCCCeEEEEeccccC
Q 026461 121 ----D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFV--------DADKDNYCNYHERLMKLLKVGGIAVYDNTLWG 185 (238)
Q Consensus 121 ----~--~~v~~~~~d~~~~l~-~~~~~~~~~~~fD~V~~--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 185 (238)
. -+++|.+.|++..-. .+..- ......|+|-+ .........++..+-..++||.++++-| .+
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD--Sp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD--SP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc--CC
Confidence 1 146788888876422 11000 00124566621 1224455678888889999999877754 45
Q ss_pred ccccC
Q 026461 186 GTVAV 190 (238)
Q Consensus 186 g~~~~ 190 (238)
|.+..
T Consensus 245 GSYS~ 249 (315)
T PF11312_consen 245 GSYSE 249 (315)
T ss_pred CCchh
Confidence 55443
No 451
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=86.49 E-value=6.4 Score=30.50 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=50.3
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
....++|.-||+| .|.....+++.+ +.+|+++|.+........ .. .+ ...+..+.++
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~----~~----~~--~~~~l~ell~---------- 90 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGAD----EF----GV--EYVSLDELLA---------- 90 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHH----HT----TE--EESSHHHHHH----------
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhcc----cc----cc--eeeehhhhcc----------
Confidence 3467899999996 344445555555 479999999988655221 11 13 2224445544
Q ss_pred CeeEEEEcCCcc-chHHHH-HHHHhccCCCeEEE
Q 026461 147 SFDYAFVDADKD-NYCNYH-ERLMKLLKVGGIAV 178 (238)
Q Consensus 147 ~fD~V~~d~~~~-~~~~~~-~~~~~~L~~gG~lv 178 (238)
..|+|++..+.. ....++ ...+..+|+|.++|
T Consensus 91 ~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred hhhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence 458998875421 111221 34467888877666
No 452
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.37 E-value=8.6 Score=33.03 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=60.7
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+.++|--+|.| .|..++.+|.++ +.+|++||-+...-+.+-+ ..|.+.-+.+. +-.++.+.. .+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~---~LGAd~fv~~~--~d~d~~~~~------~~ 245 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIK---SLGADVFVDST--EDPDIMKAI------MK 245 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHH---hcCcceeEEec--CCHHHHHHH------HH
Confidence 3456677666654 788999999998 4899999998765554444 34654333333 122344443 24
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
..|.++-.. .......++.+..+||++|.+|+-.+
T Consensus 246 ~~dg~~~~v-~~~a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 246 TTDGGIDTV-SNLAEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred hhcCcceee-eeccccchHHHHHHhhcCCEEEEEeC
Confidence 455443211 10123445567788999999988543
No 453
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.37 E-value=2.8 Score=38.78 Aligned_cols=93 Identities=8% Similarity=-0.024 Sum_probs=58.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCCCe
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF 148 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~~f 148 (238)
.+++-+|+ |..+..+++.+.. +..|+.+|.+++.++.+++. ....+.+|+.+. +.+. +-+..
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a 482 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCA 482 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----Ccccc
Confidence 45777777 7777778877642 46899999999988877642 267888998763 4433 24688
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
|.+++.-+.......+-...+...|...++.
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 9777653221212222223345566666654
No 454
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=86.25 E-value=12 Score=31.60 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=54.4
Q ss_pred CCCEEEEE--cc-cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 70 NAKKTIEI--GV-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 70 ~~~~vLei--G~-G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
.+..+|-+ |+ +.|..++.+|+.. +.+|++++.+++..+.+++ .|...-+.....+..+.+..+. ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~ 211 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL 211 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence 34455554 33 3555666677765 4689999999887777765 3542212222223323333321 134
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+|+|+-.... ......++.++++|.++.-
T Consensus 212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCcEEEECCCc----HHHHHHHHhhCCCCEEEEE
Confidence 79988843221 2234457888999988764
No 455
>PRK07680 late competence protein ComER; Validated
Probab=86.21 E-value=4.9 Score=33.46 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=50.8
Q ss_pred EEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 73 KTIEIGVFTGYSLLLTALTIPED-----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
+|.=||+ |..+..++..+... ..|+.++.+++..+...+. . ..+... .+..+.+ ..
T Consensus 2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~---~---~g~~~~-~~~~~~~----------~~ 62 (273)
T PRK07680 2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER---Y---PGIHVA-KTIEEVI----------SQ 62 (273)
T ss_pred EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH---c---CCeEEE-CCHHHHH----------Hh
Confidence 4667887 55555555543212 3689999987665444321 1 123332 2333332 35
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
.|+||+--.+....+.++.+.+.++++.+++
T Consensus 63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence 6899887766666777777777787766444
No 456
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.10 E-value=3.6 Score=32.13 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=52.9
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHH-------cC-CC--------CcEEEEecchhHHHH
Q 026461 73 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-------AG-VD--------HKINFIESEALSVLD 136 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~~l~ 136 (238)
+|.-||+|.=+.++...-... +.+|+.+|.+++.++.+++.+.+ .+ +. .++++. .|..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH--
Confidence 466788864332222222222 67999999999999888877664 11 11 234432 232222
Q ss_pred HHHhcccCCCCeeEEEEcC--CccchHHHHHHHHhccCCCeEEEEec
Q 026461 137 QLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDN 181 (238)
Q Consensus 137 ~~~~~~~~~~~fD~V~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~ 181 (238)
...|+|+=.. ..+.-.+.|..+.+.++|+.+|..+.
T Consensus 77 ---------~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 77 ---------VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ---------CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ---------hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 3778777432 12223678888888888888777653
No 457
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=86.08 E-value=9.5 Score=32.42 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=60.8
Q ss_pred hhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccC
Q 026461 67 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 144 (238)
Q Consensus 67 ~~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 144 (238)
...++.+||-.|++ .|..+..+++... .+|+++..+++..+.+++ .|...-+.....+..+.+..+. .
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----~ 231 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVEAVKELT----G 231 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHHHHHHHh----c
Confidence 34456788888775 6777777888764 689999988876665532 3432111221112222233321 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
...+|+|+-+... ...+..+.+.++++|.++.-
T Consensus 232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence 3579999864422 33456677888999988853
No 458
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=86.06 E-value=10 Score=31.83 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=56.0
Q ss_pred hcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
..+..++|-.|.+ .|..+..++... +.+++.++.+++..+.++. .+....+.....+..+.+.... ..
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence 4456788888875 555666666654 4678999888776665533 2332112111111212222221 13
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
..+|+++-.... ..+..+++.++++|.++.
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~ 263 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVT 263 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHHhhcCCEEEE
Confidence 579998865432 345667788899887775
No 459
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.03 E-value=15 Score=29.89 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=44.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEec
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 129 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 129 (238)
...+|+-+||| .|......+.... -++++-+|.+. ...+.+.+.+...+..-+++.+..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 45789999995 3443333332223 47899999754 234455666666554334554443
Q ss_pred chh-HHHHHHHhcccCCCCeeEEEEcC
Q 026461 130 EAL-SVLDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 130 d~~-~~l~~~~~~~~~~~~fD~V~~d~ 155 (238)
... +....+. ...||+|+...
T Consensus 89 ~i~~~~~~~l~-----~~~~D~Vvdai 110 (231)
T cd00755 89 FLTPDNSEDLL-----GGDPDFVVDAI 110 (231)
T ss_pred ecCHhHHHHHh-----cCCCCEEEEcC
Confidence 332 1222321 34699988653
No 460
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=85.99 E-value=13 Score=31.69 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=57.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~ 145 (238)
..+..+||-.|+| .|..+..++... +.+|+++..+++..+.+++ .|...-+.... .+..+.+..+. .
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~-----~ 231 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT-----G 231 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----C
Confidence 4456788888853 444556666654 4689999988887766643 35422122221 22222222221 2
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+.+|+++-.... ...+....+.|+++|.++.
T Consensus 232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence 379988843221 3456677889999998775
No 461
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.98 E-value=15 Score=30.59 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=59.6
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
..++.+||-.|+ +.|..++.+++.. +.+|+++..+++..+.++ ..|.. .+-....+..+.+..+ .
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------~ 206 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------P 206 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------C
Confidence 445678888885 5777778888876 467999988887665553 33542 1211122222222222 2
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.++|+++-... ...+..+.+.|+++|.++.-
T Consensus 207 ~~~d~vl~~~~----~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 207 GGFDKVLELVG----TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCceEEEECCC----hHHHHHHHHHhccCCEEEEE
Confidence 57999984322 23567778999999988753
No 462
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=85.95 E-value=9.6 Score=32.08 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=58.1
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
..+..+||-.|. +.|..+..++... +.++++++.++...+.+++. .+...-+.....+..+.+.... .
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----P 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----c
Confidence 334568888873 4677777788775 46899998888776666543 2432112221112222222221 2
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
+.+|+++-... ...+...+++|+++|.++.
T Consensus 213 ~~~d~vi~~~g----~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 213 DGIDVYFDNVG----GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred CCceEEEEcch----HHHHHHHHHhcCCCceEEE
Confidence 57998874322 2356777889999998774
No 463
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=85.82 E-value=2.4 Score=28.15 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred cCCCEEEEEcccccHHH-HHHHhhCCCCCEEEEEeCCc
Q 026461 69 VNAKKTIEIGVFTGYSL-LLTALTIPEDGQITAIDVNR 105 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t-~~la~~~~~~~~v~~iD~~~ 105 (238)
..|++||-||+.+|+-. ..++..+..++..++|-.+.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 56789999999999854 34555555567777776543
No 464
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.72 E-value=15 Score=29.01 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCcEEE
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF 126 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~--~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~ 126 (238)
...+|+-+|||. .+..+++.+ ..-++++-+|.+. ...+.+.+.+++.+..-+++.
T Consensus 18 ~~s~VlviG~gg--lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 18 RSAKVLIIGAGA--LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hhCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 446899999973 333333332 1146788887542 123455666666664445555
Q ss_pred Eecchh---HHHHHHHhcccCCCCeeEEEEcCC
Q 026461 127 IESEAL---SVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 127 ~~~d~~---~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
+..+.. +..+.+ ...||+|+....
T Consensus 96 ~~~~~~~~~~~~~~~------~~~~dvVi~~~d 122 (198)
T cd01485 96 VEEDSLSNDSNIEEY------LQKFTLVIATEE 122 (198)
T ss_pred EecccccchhhHHHH------HhCCCEEEECCC
Confidence 554442 222333 368999986543
No 465
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.70 E-value=12 Score=30.38 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=52.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS 142 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~ 142 (238)
.++++|-.|+. |..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+. +....+.
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~- 83 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA- 83 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 46788888865 555666665542 35789999998887777766665432334677888886532 2222111
Q ss_pred cCCCCeeEEEEcCC
Q 026461 143 ENEGSFDYAFVDAD 156 (238)
Q Consensus 143 ~~~~~fD~V~~d~~ 156 (238)
.+.+|.++..+.
T Consensus 84 --~g~id~li~~ag 95 (260)
T PRK07063 84 --FGPLDVLVNNAG 95 (260)
T ss_pred --hCCCcEEEECCC
Confidence 368999987653
No 466
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.67 E-value=14 Score=30.74 Aligned_cols=94 Identities=19% Similarity=0.139 Sum_probs=54.4
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHH-------HHcCC-C--------CcEEEEecchhHH
Q 026461 72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPII-------KKAGV-D--------HKINFIESEALSV 134 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~~ 134 (238)
++|.-||+| ..+..++..+. .+.+|+.+|++++.++.+++.+ .+.+. . .++++. .|.
T Consensus 4 ~kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~--- 77 (282)
T PRK05808 4 QKIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL--- 77 (282)
T ss_pred cEEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---
Confidence 367788885 33333333321 1458999999999887665433 22231 1 123222 221
Q ss_pred HHHHHhcccCCCCeeEEEEcCCccc--hHHHHHHHHhccCCCeEEEE
Q 026461 135 LDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 135 l~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~L~~gG~lv~ 179 (238)
..+ ...|+|+....... -...+..+.+.++++.+|+.
T Consensus 78 -~~~-------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 78 -DDL-------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred -HHh-------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 122 56799998754322 25788888888898877743
No 467
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=85.58 E-value=10 Score=31.26 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=58.6
Q ss_pred HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc---hhHHHHHHHh
Q 026461 66 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK 140 (238)
Q Consensus 66 ~~~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~l~~~~~ 140 (238)
....+..+||-.|+ +.|..+..++... +.+|++++.+++..+.+++ .|.. .++..+ ..+.+..+.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~- 201 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT- 201 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence 33446678998884 4666777777776 4689999888877665543 3532 222222 222222221
Q ss_pred cccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 141 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 141 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
....+|+|+-.... .....+++.|+++|.++.
T Consensus 202 ---~~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 202 ---GGRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred ---CCCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence 13579999843321 345667788999998774
No 468
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=85.51 E-value=14 Score=31.36 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=55.3
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc--hhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~l~~~~~~~~~ 144 (238)
...+.+||-.|+| .|..+..++.... ..+|++++.+++..+.+++ .|.. .++..+ ..+.+..+. +
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~----~ 232 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELT----G 232 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHh----C
Confidence 3456778888754 3334445555543 2689999888876665543 3542 122211 122222321 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
...+|+|+-... -...+..+++.|+++|.++.
T Consensus 233 ~~~~dvvld~~g---~~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 233 GRGADAVIDFVG---SDETLALAAKLLAKGGRYVI 264 (340)
T ss_pred CCCCCEEEEcCC---CHHHHHHHHHHhhcCCEEEE
Confidence 347999885332 13456777889999998875
No 469
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.50 E-value=8.9 Score=32.40 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=58.1
Q ss_pred HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHH-HHHhccc
Q 026461 66 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSE 143 (238)
Q Consensus 66 ~~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~ 143 (238)
....+..+||-+|+| .|..++.+++... ...|+.++.+++..+.+++ .+.. .++..+..+... ...
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~---- 222 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED---- 222 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh----
Confidence 334556789888865 3556666777653 2238889888887766643 2432 222222111111 111
Q ss_pred CCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 144 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 144 ~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
....+|+++-... ....+....+.|+++|.++.
T Consensus 223 ~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 223 NPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEE
Confidence 1467999985422 23566677888999998875
No 470
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.46 E-value=22 Score=32.56 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=63.1
Q ss_pred CccCcHhHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHHcCCC-CcE
Q 026461 51 MMGTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVD-HKI 124 (238)
Q Consensus 51 ~~~~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v 124 (238)
..-+.+....++..++... +.+.+.|..||+|.........+. ....+++-|..+.+...++.++...+.. +..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~ 275 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF 275 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence 3445566666666665432 346899999999998776544332 1256999999999999999987665543 223
Q ss_pred EEEecchhHHHHHHHhcccCCCCeeEEEEcC
Q 026461 125 NFIESEALSVLDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 125 ~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~ 155 (238)
....+|........ ...+||.|+.+.
T Consensus 276 ~~~~~dtl~~~d~~-----~~~~~D~v~~Np 301 (501)
T TIGR00497 276 NIINADTLTTKEWE-----NENGFEVVVSNP 301 (501)
T ss_pred CcccCCcCCCcccc-----ccccCCEEeecC
Confidence 34445543321111 135688887654
No 471
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.42 E-value=3.8 Score=38.36 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=57.3
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461 72 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 148 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f 148 (238)
.+|+-+|+ |..+..+++.+. .+..++.+|.|++.++.+++. | ..++.||+.+ .+... +-...
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A 465 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA-----GAEKA 465 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc-----CCccC
Confidence 45776666 677777766553 246899999999998887652 3 5678888875 34443 24578
Q ss_pred eEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 149 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 149 D~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
|.+++--+........-...+.+.|...+++
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 8887654322222222223355666666554
No 472
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.25 E-value=5.8 Score=33.67 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=53.8
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHc----C--CCCcEEEEecchhHHHHHHHhcccCC
Q 026461 73 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----G--VDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~--~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
+|.-||+ |..+..++..+.. +..|+.++.+++.++..++..... + ....+... .+..+. .
T Consensus 3 kI~iiG~--G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~ 69 (325)
T PRK00094 3 KIAVLGA--GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEA----------L 69 (325)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHH----------H
Confidence 5777887 5555555554422 457999999988776655431000 0 00012221 122111 2
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEE
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 178 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv 178 (238)
...|+||+.-........++.+.+.++++.+++
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEE
Confidence 467999988665566777777777888876554
No 473
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.14 E-value=21 Score=29.84 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=42.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEe
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE 128 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~--~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 128 (238)
...+|+-+||| ..+.+.++.+.. -++++-+|.+. ..++.+.+.+...+..-+++.+.
T Consensus 29 ~~s~VlVvG~G--GVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 29 ADAHICVVGIG--GVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred cCCCEEEECcC--HHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 56789999996 333333333311 37899999763 12334555665555433444443
Q ss_pred cchh-HHHHHHHhcccCCCCeeEEEEcCC
Q 026461 129 SEAL-SVLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 129 ~d~~-~~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
.... +....+. ...||+|+...+
T Consensus 107 ~~i~~e~~~~ll-----~~~~D~VIdaiD 130 (268)
T PRK15116 107 DFITPDNVAEYM-----SAGFSYVIDAID 130 (268)
T ss_pred cccChhhHHHHh-----cCCCCEEEEcCC
Confidence 2111 1222221 257999876543
No 474
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.12 E-value=13 Score=30.10 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=51.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS 142 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~ 142 (238)
.++++|-.|+ +|..+..++..+. .+.+|+.++.+++..+...+.+...+ .++.++.+|..+. +......
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~- 81 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA- 81 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence 4578888886 4555666655543 24689999999887776666665544 4588888887532 2222111
Q ss_pred cCCCCeeEEEEcC
Q 026461 143 ENEGSFDYAFVDA 155 (238)
Q Consensus 143 ~~~~~fD~V~~d~ 155 (238)
.+++|.|+..+
T Consensus 82 --~g~id~li~~a 92 (253)
T PRK06172 82 --YGRLDYAFNNA 92 (253)
T ss_pred --hCCCCEEEECC
Confidence 36789998764
No 475
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.11 E-value=14 Score=31.36 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=51.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhc-ccCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE 145 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~-~~~~ 145 (238)
..+++|-.|++ |..+..+++.+. .+.+|+.+..+++..+.+.+.+....-..++.++.+|..+. +..+.++ ....
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45778888865 445566665543 35789999998877776666655432223578888886542 1211111 0114
Q ss_pred CCeeEEEEcC
Q 026461 146 GSFDYAFVDA 155 (238)
Q Consensus 146 ~~fD~V~~d~ 155 (238)
+..|+++.++
T Consensus 92 ~~iD~li~nA 101 (313)
T PRK05854 92 RPIHLLINNA 101 (313)
T ss_pred CCccEEEECC
Confidence 6899998765
No 476
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.92 E-value=4.9 Score=35.29 Aligned_cols=33 Identities=12% Similarity=-0.068 Sum_probs=21.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCC
Q 026461 71 AKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVN 104 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~ 104 (238)
..+|.-||. +|..+-+|+..+. .+.+|+++|.+
T Consensus 4 ~~~I~IIGl-~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 4 QPVVGIVGS-AGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 357888885 3555555555553 15689999984
No 477
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=84.88 E-value=20 Score=30.22 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=57.8
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCC
Q 026461 67 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 145 (238)
Q Consensus 67 ~~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 145 (238)
......+||-.|+| .|..+..+++.. +.+|++++.+++..+.+++ .+.. .++........... .
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~------~ 223 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAA------A 223 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhc------c
Confidence 34456688888886 666667777765 4689999988877666643 2422 12211111111111 2
Q ss_pred CCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 146 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 146 ~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
+.+|+++-.... ......+++.|+++|.++.-
T Consensus 224 ~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 224 GGADVILVTVVS---GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCCCEEEECCCc---HHHHHHHHHhcccCCEEEEE
Confidence 579988843221 34566778899999977753
No 478
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=84.88 E-value=15 Score=32.11 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchh-HHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCCC
Q 026461 70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEG 146 (238)
Q Consensus 70 ~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~~ 146 (238)
+..+||-.|+| .|..++.+|+.. +.+|++++.+++. .+.+ +..|... ++. .+. +.+... .+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a----~~lGa~~---~i~~~~~-~~v~~~------~~ 241 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAI----DRLGADS---FLVTTDS-QKMKEA------VG 241 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHH----HhCCCcE---EEcCcCH-HHHHHh------hC
Confidence 45678888875 455556677765 4679999887543 3333 2345421 221 121 222222 23
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEecc
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 182 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 182 (238)
.+|+|+--.. ....+....+.++++|.++.-..
T Consensus 242 ~~D~vid~~G---~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 242 TMDFIIDTVS---AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred CCcEEEECCC---cHHHHHHHHHhhcCCCEEEEEcc
Confidence 6898885332 23356677789999998886443
No 479
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.81 E-value=20 Score=29.26 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH------HHHHHHhc
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY 141 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~l~~~~~~ 141 (238)
.++.+|-.|+++ +..+..+++.+. .+.+|+.++.+.+..+...+.....+ .+.++.+|..+ .+....+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 467899999775 356666665542 25688888887654333333322222 23456666543 22222222
Q ss_pred ccCCCCeeEEEEcC
Q 026461 142 SENEGSFDYAFVDA 155 (238)
Q Consensus 142 ~~~~~~fD~V~~d~ 155 (238)
.+..|+++.++
T Consensus 86 ---~g~ld~lv~nA 96 (258)
T PRK07533 86 ---WGRLDFLLHSI 96 (258)
T ss_pred ---cCCCCEEEEcC
Confidence 36899998775
No 480
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.81 E-value=6.8 Score=33.16 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=48.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--HHHHHhcccCCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG 146 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~ 146 (238)
..++||-.| |+|..+.++++.+- .+.+|+++..++.............+...+++++.+|..+. +... -.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~------~~ 76 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA------ID 76 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH------Hc
Confidence 356788888 67888888887663 24678777776654433322222223234688888888753 3333 24
Q ss_pred CeeEEEEcC
Q 026461 147 SFDYAFVDA 155 (238)
Q Consensus 147 ~fD~V~~d~ 155 (238)
..|.|+..+
T Consensus 77 ~~d~vih~A 85 (325)
T PLN02989 77 GCETVFHTA 85 (325)
T ss_pred CCCEEEEeC
Confidence 579888764
No 481
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.81 E-value=9.8 Score=31.33 Aligned_cols=81 Identities=22% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--H---HHHHhcccC
Q 026461 71 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L---DQLLKYSEN 144 (238)
Q Consensus 71 ~~~vLeiG~G~G~~t~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l---~~~~~~~~~ 144 (238)
.+.+|-.|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...++.++.+|..+. + ....+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--- 78 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--- 78 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh---
Confidence 356788884 555566666544 235689999988877766665555555445688888887552 1 111111
Q ss_pred CCCeeEEEEcC
Q 026461 145 EGSFDYAFVDA 155 (238)
Q Consensus 145 ~~~fD~V~~d~ 155 (238)
.++.|.|+..+
T Consensus 79 ~~~id~vv~~a 89 (280)
T PRK06914 79 IGRIDLLVNNA 89 (280)
T ss_pred cCCeeEEEECC
Confidence 36789988764
No 482
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=84.64 E-value=0.74 Score=41.10 Aligned_cols=106 Identities=11% Similarity=0.018 Sum_probs=59.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEe-cchhHHHHHHHhcccCCC
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEG 146 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~l~~~~~~~~~~~ 146 (238)
.+|..+.++|+|.|.-...+....+. .-.++.||.+..+......+++.......+.+.. .--...++.. ...
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~-----~~~ 273 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPID-----IKN 273 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCC-----ccc
Confidence 34567888988866654333333331 2469999999999999988876511111111111 0111122221 246
Q ss_pred CeeEEEEcCCccc------hHHHHHHH-HhccCCCeEEEE
Q 026461 147 SFDYAFVDADKDN------YCNYHERL-MKLLKVGGIAVY 179 (238)
Q Consensus 147 ~fD~V~~d~~~~~------~~~~~~~~-~~~L~~gG~lv~ 179 (238)
.||+|++.+.... -....+.+ ....++|+.+|+
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 7999998753211 12222333 467889998775
No 483
>PRK07877 hypothetical protein; Provisional
Probab=84.63 E-value=11 Score=36.21 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc------------------hhHHHHHHHHHHcCCCCcEEEEecch
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIESEA 131 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (238)
...+|+-+|||.|......+....-.++++-+|.+. ..++.+++.+...+-.-+|+.+....
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 457899999997776655443332026888888654 34566677777666555566666544
Q ss_pred hH-HHHHHHhcccCCCCeeEEEEcCC
Q 026461 132 LS-VLDQLLKYSENEGSFDYAFVDAD 156 (238)
Q Consensus 132 ~~-~l~~~~~~~~~~~~fD~V~~d~~ 156 (238)
.. .+..+ -..+|+|+-..+
T Consensus 186 ~~~n~~~~------l~~~DlVvD~~D 205 (722)
T PRK07877 186 TEDNVDAF------LDGLDVVVEECD 205 (722)
T ss_pred CHHHHHHH------hcCCCEEEECCC
Confidence 32 34444 357999885544
No 484
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=84.59 E-value=13 Score=31.07 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=60.9
Q ss_pred CCCEEEEE--cccccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 70 NAKKTIEI--GVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 70 ~~~~vLei--G~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
++..||-- .-|.|.....|++.. +.++++.--..+..+.|+++ |...-|.+...|..+....+ .+...
T Consensus 146 pGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~ki----TngKG 215 (336)
T KOG1197|consen 146 PGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKI----TNGKG 215 (336)
T ss_pred CCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhc----cCCCC
Confidence 44445433 223444555555543 57888888877777777765 65555677777766655554 23578
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
.|.++-.-. .+.++.-+.+||++|.+|-
T Consensus 216 Vd~vyDsvG----~dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 216 VDAVYDSVG----KDTFAKSLAALKPMGKMVS 243 (336)
T ss_pred ceeeecccc----chhhHHHHHHhccCceEEE
Confidence 898884433 3445566789999998875
No 485
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=84.46 E-value=1.3 Score=30.57 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
...||++++|+...-.++.+..+...++-||++++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllil 43 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLIL 43 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEE
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEE
Confidence 46899999999877789999999999999998887
No 486
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=84.44 E-value=1.6 Score=36.77 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=37.6
Q ss_pred cEEEEecchhHHHHHHHhcccCCCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEeccc
Q 026461 123 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 123 ~v~~~~~d~~~~l~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
+|.|+..+..+.++.-.. -.+-||+||+.+...+... ..+.++++|+|+|+++...
T Consensus 201 kVhFLPld~~~~L~~K~k---y~~~Fd~ifvs~s~vh~L~--p~l~~~~a~~A~LvvEtaK 256 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSK---YQNFFDLIFVSCSMVHFLK--PELFQALAPDAVLVVETAK 256 (289)
T ss_pred EEEEeCchHHHHHhhHHh---hcCCCCEEEEhhhhHhhcc--hHHHHHhCCCCEEEEEcch
Confidence 466777776666554222 2689999999875332211 1366788999999999863
No 487
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=84.36 E-value=25 Score=31.58 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=52.3
Q ss_pred CCEEEEEc-ccccHHHHH--HHhhCCC-CCEEEEEeCCchh---HHHHHHHHHHcCCCCcEEEEe----cchhH----HH
Q 026461 71 AKKTIEIG-VFTGYSLLL--TALTIPE-DGQITAIDVNRET---YEIGLPIIKKAGVDHKINFIE----SEALS----VL 135 (238)
Q Consensus 71 ~~~vLeiG-~G~G~~t~~--la~~~~~-~~~v~~iD~~~~~---~~~a~~~~~~~~~~~~v~~~~----~d~~~----~l 135 (238)
+..|+=+| .|+|-+|.. ||..+.. +.+|..++.++.. +++.+.+....+ +.+.. .|... .+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~----vp~~~~~~~~dp~~i~~~~l 175 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR----IPFYGSYTESDPVKIASEGV 175 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC----CeEEeecCCCCHHHHHHHHH
Confidence 44677777 677876643 4443321 3466666665533 333333333333 33332 23222 22
Q ss_pred HHHHhcccCCCCeeEEEEcCCc--cc---hHHHHHHHHhccCCCeEEEEeccc
Q 026461 136 DQLLKYSENEGSFDYAFVDADK--DN---YCNYHERLMKLLKVGGIAVYDNTL 183 (238)
Q Consensus 136 ~~~~~~~~~~~~fD~V~~d~~~--~~---~~~~~~~~~~~L~~gG~lv~~~~~ 183 (238)
..+. ...||+|++|-.- +. ...-+..+.+..+|.-++++-|..
T Consensus 176 ~~~~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 176 EKFK-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS 223 (429)
T ss_pred HHHH-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence 2221 3589999999532 12 223334444567787655554443
No 488
>PRK08328 hypothetical protein; Provisional
Probab=84.32 E-value=17 Score=29.49 Aligned_cols=79 Identities=16% Similarity=0.062 Sum_probs=42.7
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc--------------------hhHHHHHHHHHHcCCCCcEEEEe
Q 026461 70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR--------------------ETYEIGLPIIKKAGVDHKINFIE 128 (238)
Q Consensus 70 ~~~~vLeiG~G~-G~~t~~la~~~~~~~~v~~iD~~~--------------------~~~~~a~~~~~~~~~~~~v~~~~ 128 (238)
...+|+-+|||. |......+.... -++++.+|.+. ...+.+++.+...+..-+++...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 456899999973 444433333333 57899998543 12333445555554333444444
Q ss_pred cchhH-HHHHHHhcccCCCCeeEEEEcC
Q 026461 129 SEALS-VLDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 129 ~d~~~-~l~~~~~~~~~~~~fD~V~~d~ 155 (238)
....+ .+..+ -..+|+|+...
T Consensus 105 ~~~~~~~~~~~------l~~~D~Vid~~ 126 (231)
T PRK08328 105 GRLSEENIDEV------LKGVDVIVDCL 126 (231)
T ss_pred ccCCHHHHHHH------HhcCCEEEECC
Confidence 33222 22222 25799998643
No 489
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.28 E-value=15 Score=31.58 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=45.5
Q ss_pred CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCcEEEEecc
Q 026461 72 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESE 130 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~--~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d 130 (238)
.+||-||+ |+.+..+++.+. .-.++..||++. ...+.|.+.+.+.=....|.....+
T Consensus 41 ~kiLviGA--GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k 118 (422)
T KOG2015|consen 41 CKILVIGA--GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK 118 (422)
T ss_pred CcEEEEcc--CcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence 67999998 556666665442 123555555532 2344444444332223446777778
Q ss_pred hhHHHHHHHhcccCCCCeeEEEEcC
Q 026461 131 ALSVLDQLLKYSENEGSFDYAFVDA 155 (238)
Q Consensus 131 ~~~~l~~~~~~~~~~~~fD~V~~d~ 155 (238)
+.+....+ -..||+|+...
T Consensus 119 Iqd~~~~F------Yk~F~~iicGL 137 (422)
T KOG2015|consen 119 IQDKPISF------YKRFDLIICGL 137 (422)
T ss_pred hhcCCHHH------HhhhceEEecc
Confidence 87765555 47999999764
No 490
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.24 E-value=4.4 Score=34.59 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEE-Eec
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV-YDN 181 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv-~~~ 181 (238)
.+.+|+|++.-..-...+.++.+.+.+++..+++ +.|
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 4689999998766677888999999999987544 444
No 491
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=84.08 E-value=0.98 Score=32.15 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN 104 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~ 104 (238)
++...+|||||.|...--|... +-+=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCccccccc
Confidence 4557999999999987665542 3344677764
No 492
>PLN02702 L-idonate 5-dehydrogenase
Probab=84.06 E-value=15 Score=31.62 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=58.9
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEE--ecchhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~l~~~~~~~~~ 144 (238)
.....+||-+|+| .|..++.++.... ...|++++.+++..+.+++ .|....+.+. ..+..+.+..+... .
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~--~ 251 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA--M 251 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh--c
Confidence 4456688888764 4555677777654 3468899988776665554 3543222221 12222222222100 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+.+|+|+-.... ...+...+++|+++|.++.-
T Consensus 252 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 252 GGGIDVSFDCVGF---NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 3478988754321 34567788999999988753
No 493
>PRK07904 short chain dehydrogenase; Provisional
Probab=83.85 E-value=8.4 Score=31.47 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=51.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC-C-CCEEEEEeCCchh-HHHHHHHHHHcCCCCcEEEEecchhHH------HHHHH
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIP-E-DGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALSV------LDQLL 139 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~-~-~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~ 139 (238)
.++++||-.|+ +|..+..+++.+- . +.+|+.++.+++. .+.+.+.+...+ ..++.++.+|..+. ++...
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 35678888887 5666777776642 2 2589999988775 665555555544 23588888886532 22221
Q ss_pred hcccCCCCeeEEEEcC
Q 026461 140 KYSENEGSFDYAFVDA 155 (238)
Q Consensus 140 ~~~~~~~~fD~V~~d~ 155 (238)
+ .+..|+++...
T Consensus 84 -~---~g~id~li~~a 95 (253)
T PRK07904 84 -A---GGDVDVAIVAF 95 (253)
T ss_pred -h---cCCCCEEEEee
Confidence 1 25899888653
No 494
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=83.85 E-value=16 Score=29.67 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH--H----HHHHhcc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L----DQLLKYS 142 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l----~~~~~~~ 142 (238)
..+++|-.| |+|..+..+++.+- .+.+|+.++.++...+...+.+...+ .++.++.+|..+. + ....+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~- 86 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER- 86 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 457889888 56777777776653 25689999998877776666665433 4577888887642 2 222111
Q ss_pred cCCCCeeEEEEcC
Q 026461 143 ENEGSFDYAFVDA 155 (238)
Q Consensus 143 ~~~~~fD~V~~d~ 155 (238)
.+++|.|+..+
T Consensus 87 --~~~id~vi~~a 97 (259)
T PRK08213 87 --FGHVDILVNNA 97 (259)
T ss_pred --hCCCCEEEECC
Confidence 35789998764
No 495
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.78 E-value=8.3 Score=32.24 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=52.8
Q ss_pred EEEEEcccccHHHHHHHhhCC-----CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCCC
Q 026461 73 KTIEIGVFTGYSLLLTALTIP-----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 147 (238)
Q Consensus 73 ~vLeiG~G~G~~t~~la~~~~-----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 147 (238)
+|.=||| |..+..++..+- ...+|++.|.+++.++.+.+ ..| ++.. .+..+.. ..
T Consensus 4 ~IgfIG~--G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g----~~~~-~~~~e~~----------~~ 63 (272)
T PRK12491 4 QIGFIGC--GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYG----ITIT-TNNNEVA----------NS 63 (272)
T ss_pred eEEEECc--cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcC----cEEe-CCcHHHH----------hh
Confidence 5778888 555555555432 12469999998876554433 223 2322 2333332 34
Q ss_pred eeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 148 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 148 fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
-|+||+.-.+......++.+.+.++++ .++++
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvIS 95 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKND-VIVVT 95 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEE
Confidence 599999877777788888887777765 44444
No 496
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=83.77 E-value=13 Score=31.78 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=55.2
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHHHHHHHhcccCCC
Q 026461 68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 146 (238)
Q Consensus 68 ~~~~~~vLeiG~G-~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 146 (238)
..+..+||-.|+| .|..+..+|.... ...+++++.+++..+.+.+ .|...-+.....+..+.+..+. ...
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----~~~ 242 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPEVDVVEKIKELT----GGY 242 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----CCC
Confidence 4455666666653 4455566777664 3568889988776654443 3542111111122223333331 124
Q ss_pred CeeEEEEcCCccchHHHHHHHHhccCCCeEEEEe
Q 026461 147 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 180 (238)
Q Consensus 147 ~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 180 (238)
.+|+++-.... ...+....+.++++|.++.-
T Consensus 243 ~vdvvld~~g~---~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 243 GCDIYIEATGH---PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence 69988743221 23466678899999987763
No 497
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=83.63 E-value=16 Score=30.63 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=58.0
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecc-hhHHHHHHHhcccC
Q 026461 68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN 144 (238)
Q Consensus 68 ~~~~~~vLeiG~--G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~l~~~~~~~~~ 144 (238)
..+..+||-.|+ +.|..++.++... +.+++.+..+++..+.+++ .|...-+.....+ ..+.+.... .
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~ 207 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----G 207 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----C
Confidence 345568888874 5777777888776 3566778888777666643 3542111111112 222222221 1
Q ss_pred CCCeeEEEEcCCccchHHHHHHHHhccCCCeEEEE
Q 026461 145 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 179 (238)
Q Consensus 145 ~~~fD~V~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 179 (238)
...+|+++-... ...+..+++.|+++|.++.
T Consensus 208 ~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 208 EKGVNLVLDCVG----GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred CCCceEEEECCc----hHHHHHHHHHhccCCeEEE
Confidence 357999984322 3466777889999998875
No 498
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=83.50 E-value=1 Score=37.67 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchhH
Q 026461 69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 108 (238)
Q Consensus 69 ~~~~~vLeiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~ 108 (238)
...++|||+|||+|.-.+...... ...++..|.+.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 467899999999999998877653 26788888888766
No 499
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.47 E-value=4.2 Score=38.25 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=46.9
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhH--HHHHHHhcccCCCCe
Q 026461 72 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 148 (238)
Q Consensus 72 ~~vLeiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~l~~~~~~~~~~~~f 148 (238)
.+|+-+|+ |..+..+++.+.. +..++.+|.|++.++.+++. | ..++.||+.+ .+... +-+..
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A 465 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA-----GAAKA 465 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc-----CCCcC
Confidence 57888888 5555555554432 45799999999999888652 3 5678888865 34432 24578
Q ss_pred eEEEEcC
Q 026461 149 DYAFVDA 155 (238)
Q Consensus 149 D~V~~d~ 155 (238)
|++++--
T Consensus 466 ~~vvv~~ 472 (621)
T PRK03562 466 EVLINAI 472 (621)
T ss_pred CEEEEEe
Confidence 8887653
No 500
>PRK05867 short chain dehydrogenase; Provisional
Probab=83.29 E-value=15 Score=29.71 Aligned_cols=80 Identities=21% Similarity=0.151 Sum_probs=50.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHHcCCCCcEEEEecchhHH------HHHHHhcc
Q 026461 70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS 142 (238)
Q Consensus 70 ~~~~vLeiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------l~~~~~~~ 142 (238)
..+++|-.|++. ..+..+++.+. .+.+|+.++.+++..+...+.+...+ .++.++.+|..+. +....+.
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~- 83 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE- 83 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence 467889888644 44555555442 35789999998887777666665544 3577777776432 2222111
Q ss_pred cCCCCeeEEEEcC
Q 026461 143 ENEGSFDYAFVDA 155 (238)
Q Consensus 143 ~~~~~fD~V~~d~ 155 (238)
.++.|.++..+
T Consensus 84 --~g~id~lv~~a 94 (253)
T PRK05867 84 --LGGIDIAVCNA 94 (253)
T ss_pred --hCCCCEEEECC
Confidence 36899998764
Done!