Query 026464
Match_columns 238
No_of_seqs 207 out of 1709
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 1.9E-41 4.2E-46 290.2 20.8 171 62-234 30-220 (244)
2 PLN02459 probable adenylate ki 100.0 3.5E-41 7.6E-46 290.1 20.6 173 62-234 28-226 (261)
3 PTZ00088 adenylate kinase 1; P 100.0 1.2E-38 2.7E-43 271.4 21.2 173 62-234 5-202 (229)
4 PRK14529 adenylate kinase; Pro 100.0 3.1E-38 6.7E-43 267.4 19.0 167 64-233 1-193 (223)
5 PRK14526 adenylate kinase; Pro 100.0 5.6E-38 1.2E-42 264.5 20.5 168 65-234 2-184 (211)
6 KOG3079 Uridylate kinase/adeny 100.0 7.7E-38 1.7E-42 252.8 19.3 161 60-234 5-168 (195)
7 TIGR01351 adk adenylate kinase 100.0 1.1E-37 2.4E-42 262.3 20.5 169 65-234 1-186 (210)
8 PRK00279 adk adenylate kinase; 100.0 1E-35 2.3E-40 251.1 20.1 169 64-234 1-189 (215)
9 PF00406 ADK: Adenylate kinase 100.0 1.3E-35 2.7E-40 237.3 16.9 144 68-234 1-149 (151)
10 KOG3078 Adenylate kinase [Nucl 100.0 5.1E-35 1.1E-39 246.5 16.0 172 62-235 14-201 (235)
11 PRK14528 adenylate kinase; Pro 100.0 9.2E-34 2E-38 234.5 20.2 157 64-234 2-163 (186)
12 PRK13808 adenylate kinase; Pro 100.0 5.1E-34 1.1E-38 253.4 19.3 162 64-234 1-168 (333)
13 PRK14531 adenylate kinase; Pro 100.0 1.2E-33 2.6E-38 233.1 19.5 153 63-234 2-159 (183)
14 PRK14530 adenylate kinase; Pro 100.0 1.9E-33 4.1E-38 237.4 20.9 166 63-234 3-188 (215)
15 cd01428 ADK Adenylate kinase ( 100.0 1.4E-32 3E-37 227.1 20.2 168 65-234 1-179 (194)
16 PRK14532 adenylate kinase; Pro 100.0 3.4E-32 7.3E-37 224.7 19.6 156 65-234 2-162 (188)
17 PLN02842 nucleotide kinase 100.0 1.6E-32 3.5E-37 254.5 19.0 169 67-236 1-181 (505)
18 COG0563 Adk Adenylate kinase a 100.0 1.1E-31 2.4E-36 220.5 17.1 152 64-232 1-157 (178)
19 PLN02200 adenylate kinase fami 100.0 4.2E-31 9.1E-36 226.0 21.0 157 61-234 41-199 (234)
20 PRK14527 adenylate kinase; Pro 100.0 6.3E-31 1.4E-35 218.0 20.3 158 62-234 5-167 (191)
21 PRK02496 adk adenylate kinase; 100.0 5.6E-31 1.2E-35 216.8 19.5 154 63-234 1-159 (184)
22 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 1.3E-30 2.7E-35 214.0 19.2 155 65-234 1-159 (183)
23 TIGR01360 aden_kin_iso1 adenyl 100.0 3.4E-27 7.4E-32 193.8 20.7 158 63-233 3-161 (188)
24 PRK01184 hypothetical protein; 99.7 2.4E-16 5.2E-21 129.5 15.9 119 63-189 1-126 (184)
25 PRK08356 hypothetical protein; 99.7 1.6E-16 3.5E-21 132.1 10.8 119 62-189 4-137 (195)
26 PRK08118 topology modulation p 99.6 2.6E-15 5.6E-20 122.2 10.1 99 64-189 2-101 (167)
27 PRK13974 thymidylate kinase; P 99.6 1.9E-14 4E-19 121.4 13.6 149 63-234 3-181 (212)
28 PRK06217 hypothetical protein; 99.6 9.6E-15 2.1E-19 120.3 10.5 107 63-190 1-107 (183)
29 PRK03839 putative kinase; Prov 99.6 2.1E-14 4.4E-19 117.7 10.6 101 65-189 2-102 (180)
30 PHA02530 pseT polynucleotide k 99.6 6.7E-15 1.5E-19 129.7 8.2 147 63-233 2-156 (300)
31 PRK00625 shikimate kinase; Pro 99.5 1.3E-13 2.9E-18 112.8 12.0 138 64-222 1-141 (173)
32 COG0703 AroK Shikimate kinase 99.5 2.5E-13 5.3E-18 110.3 13.4 138 63-224 2-145 (172)
33 PRK13973 thymidylate kinase; P 99.5 1.6E-13 3.4E-18 115.8 12.4 142 63-224 3-177 (213)
34 PRK08233 hypothetical protein; 99.5 1.6E-13 3.5E-18 111.8 11.6 141 62-227 2-142 (182)
35 PRK13949 shikimate kinase; Pro 99.5 9.2E-13 2E-17 107.4 15.8 109 64-187 2-114 (169)
36 KOG3347 Predicted nucleotide k 99.5 2.1E-13 4.5E-18 107.5 10.7 110 62-189 6-115 (176)
37 PRK14730 coaE dephospho-CoA ki 99.5 1.7E-12 3.6E-17 108.2 13.5 120 64-188 2-147 (195)
38 PRK04040 adenylate kinase; Pro 99.4 2.7E-12 5.8E-17 106.4 13.1 139 63-224 2-155 (188)
39 PF13671 AAA_33: AAA domain; P 99.4 2.9E-12 6.3E-17 100.4 12.5 112 65-189 1-120 (143)
40 PRK07261 topology modulation p 99.4 7.4E-13 1.6E-17 108.1 9.3 101 64-189 1-101 (171)
41 COG1102 Cmk Cytidylate kinase 99.4 6.7E-12 1.4E-16 100.3 14.3 111 64-188 1-112 (179)
42 PRK00081 coaE dephospho-CoA ki 99.4 2.1E-12 4.5E-17 107.5 11.1 120 63-188 2-146 (194)
43 COG1936 Predicted nucleotide k 99.4 3.7E-13 8.1E-18 108.6 6.2 106 64-191 1-107 (180)
44 cd02022 DPCK Dephospho-coenzym 99.4 2.7E-12 5.9E-17 105.4 10.7 119 65-188 1-143 (179)
45 PRK13947 shikimate kinase; Pro 99.4 6.1E-12 1.3E-16 101.9 11.7 110 64-188 2-115 (171)
46 TIGR02173 cyt_kin_arch cytidyl 99.4 1.8E-11 3.9E-16 98.7 14.3 112 64-188 1-113 (171)
47 COG0237 CoaE Dephospho-CoA kin 99.4 1.3E-11 2.9E-16 103.2 13.7 119 62-188 1-145 (201)
48 cd00464 SK Shikimate kinase (S 99.4 3.3E-11 7.2E-16 95.5 15.3 109 66-188 2-113 (154)
49 PRK12339 2-phosphoglycerate ki 99.4 1.2E-12 2.6E-17 109.3 7.0 121 62-189 2-142 (197)
50 PRK13975 thymidylate kinase; P 99.3 1E-10 2.2E-15 96.7 16.2 115 63-188 2-135 (196)
51 PRK06762 hypothetical protein; 99.3 2.7E-11 5.8E-16 97.8 12.3 112 62-189 1-118 (166)
52 PRK04182 cytidylate kinase; Pr 99.3 2.6E-11 5.6E-16 98.5 12.0 112 64-188 1-113 (180)
53 PRK14734 coaE dephospho-CoA ki 99.3 3.1E-11 6.7E-16 101.0 12.6 119 64-188 2-147 (200)
54 cd02021 GntK Gluconate kinase 99.3 6E-11 1.3E-15 94.1 13.5 114 65-189 1-120 (150)
55 smart00072 GuKc Guanylate kina 99.3 7.7E-12 1.7E-16 103.1 8.4 137 63-225 2-155 (184)
56 PRK13946 shikimate kinase; Pro 99.3 1.1E-10 2.3E-15 96.3 15.2 116 61-189 8-125 (184)
57 PRK13948 shikimate kinase; Pro 99.3 7.3E-11 1.6E-15 97.4 14.1 110 62-186 9-122 (182)
58 TIGR00152 dephospho-CoA kinase 99.3 1.6E-11 3.4E-16 101.4 9.6 117 65-188 1-145 (188)
59 PRK03731 aroL shikimate kinase 99.3 1E-10 2.3E-15 94.7 14.1 139 64-222 3-145 (171)
60 PLN02422 dephospho-CoA kinase 99.3 6.4E-11 1.4E-15 101.1 12.7 118 64-188 2-147 (232)
61 TIGR00041 DTMP_kinase thymidyl 99.3 1.8E-10 3.9E-15 95.2 14.9 123 63-189 3-150 (195)
62 PRK00698 tmk thymidylate kinas 99.2 2.5E-10 5.3E-15 94.8 14.1 123 62-188 2-149 (205)
63 PLN02924 thymidylate kinase 99.2 6.3E-10 1.4E-14 94.5 16.6 119 60-185 13-154 (220)
64 cd02020 CMPK Cytidine monophos 99.2 2.6E-11 5.7E-16 95.1 7.6 103 65-187 1-103 (147)
65 PRK06547 hypothetical protein; 99.2 7.6E-11 1.6E-15 96.4 10.4 124 60-188 12-139 (172)
66 PRK14731 coaE dephospho-CoA ki 99.2 1.2E-10 2.7E-15 97.9 11.8 122 62-189 4-156 (208)
67 PF13207 AAA_17: AAA domain; P 99.2 3.3E-12 7.1E-17 97.5 2.0 110 65-188 1-111 (121)
68 PTZ00451 dephospho-CoA kinase; 99.2 1.9E-10 4E-15 99.0 13.0 54 63-116 1-54 (244)
69 PRK14021 bifunctional shikimat 99.2 1E-10 2.3E-15 111.4 12.5 119 59-188 2-124 (542)
70 PRK00131 aroK shikimate kinase 99.2 1.1E-10 2.4E-15 94.1 10.2 114 62-188 3-118 (175)
71 PRK05057 aroK shikimate kinase 99.2 3.2E-10 6.9E-15 92.6 11.7 112 63-188 4-118 (172)
72 cd01672 TMPK Thymidine monopho 99.2 1.8E-09 4E-14 88.6 16.0 119 64-189 1-148 (200)
73 PRK14733 coaE dephospho-CoA ki 99.2 3.9E-10 8.5E-15 94.6 11.9 124 61-189 4-151 (204)
74 PLN02199 shikimate kinase 99.2 1.5E-09 3.3E-14 95.3 16.0 110 62-186 101-214 (303)
75 PF01121 CoaE: Dephospho-CoA k 99.2 2E-10 4.3E-15 94.7 9.7 119 64-188 1-144 (180)
76 COG0194 Gmk Guanylate kinase [ 99.1 8.8E-10 1.9E-14 90.3 12.2 140 62-229 3-159 (191)
77 PRK08154 anaerobic benzoate ca 99.1 8E-10 1.7E-14 98.4 13.0 119 57-188 127-248 (309)
78 TIGR01313 therm_gnt_kin carboh 99.1 3.3E-10 7.2E-15 91.1 9.3 109 66-189 1-116 (163)
79 TIGR03574 selen_PSTK L-seryl-t 99.1 1.9E-09 4.2E-14 92.8 13.9 109 65-189 1-118 (249)
80 PRK14732 coaE dephospho-CoA ki 99.1 6.1E-10 1.3E-14 93.0 9.7 117 66-188 2-143 (196)
81 COG0125 Tmk Thymidylate kinase 99.1 3.6E-09 7.8E-14 89.0 14.4 124 62-189 2-150 (208)
82 PRK03333 coaE dephospho-CoA ki 99.1 1.2E-09 2.5E-14 100.4 12.3 120 64-188 2-145 (395)
83 PRK10078 ribose 1,5-bisphospho 99.1 2.2E-09 4.8E-14 88.5 12.4 117 63-188 2-132 (186)
84 PRK09825 idnK D-gluconate kina 99.1 4.4E-09 9.6E-14 86.3 13.6 117 63-190 3-122 (176)
85 PRK13951 bifunctional shikimat 99.0 2E-09 4.3E-14 101.3 11.2 110 64-188 1-113 (488)
86 KOG3354 Gluconate kinase [Carb 99.0 3.2E-09 7E-14 84.5 10.3 116 63-189 12-140 (191)
87 PRK00300 gmk guanylate kinase; 99.0 5E-09 1.1E-13 87.2 11.5 139 62-226 4-158 (205)
88 cd00227 CPT Chloramphenicol (C 99.0 1E-08 2.2E-13 83.7 13.1 121 63-188 2-132 (175)
89 PF13238 AAA_18: AAA domain; P 99.0 1.8E-10 3.9E-15 88.0 2.3 112 66-189 1-114 (129)
90 TIGR03263 guanyl_kin guanylate 99.0 2.7E-09 5.9E-14 87.0 9.1 136 63-224 1-152 (180)
91 PRK05541 adenylylsulfate kinas 99.0 1E-08 2.2E-13 83.6 12.0 108 61-186 5-121 (176)
92 PRK13976 thymidylate kinase; P 99.0 3.2E-08 6.9E-13 83.4 15.1 117 64-188 1-146 (209)
93 PRK14738 gmk guanylate kinase; 98.9 4.9E-09 1.1E-13 88.0 9.6 138 59-224 9-164 (206)
94 PF01202 SKI: Shikimate kinase 98.9 6.4E-09 1.4E-13 83.6 9.6 103 72-189 1-107 (158)
95 cd02030 NDUO42 NADH:Ubiquinone 98.9 2E-08 4.3E-13 85.0 13.0 125 65-189 1-165 (219)
96 PRK05480 uridine/cytidine kina 98.9 1.2E-08 2.6E-13 85.4 11.4 123 61-189 4-148 (209)
97 TIGR02322 phosphon_PhnN phosph 98.9 3.1E-08 6.7E-13 80.8 13.1 116 64-188 2-132 (179)
98 COG3265 GntK Gluconate kinase 98.9 1E-08 2.2E-13 81.1 9.4 110 69-189 1-113 (161)
99 KOG3220 Similar to bacterial d 98.9 3.1E-09 6.8E-14 87.8 6.7 120 63-188 1-147 (225)
100 cd01673 dNK Deoxyribonucleosid 98.9 2.5E-08 5.5E-13 82.3 11.8 119 65-189 1-147 (193)
101 PF02223 Thymidylate_kin: Thym 98.9 4.7E-08 1E-12 80.3 13.1 118 68-189 1-141 (186)
102 PRK14737 gmk guanylate kinase; 98.9 4.3E-08 9.3E-13 81.2 12.5 135 61-223 2-155 (186)
103 PRK07933 thymidylate kinase; V 98.9 2E-08 4.3E-13 84.9 10.4 116 64-188 1-154 (213)
104 PRK07667 uridine kinase; Provi 98.9 8.7E-09 1.9E-13 85.6 8.0 122 62-188 16-160 (193)
105 COG1428 Deoxynucleoside kinase 98.8 1E-07 2.2E-12 79.7 13.7 31 63-93 4-34 (216)
106 TIGR00235 udk uridine kinase. 98.8 1.1E-08 2.4E-13 85.7 8.0 126 60-189 3-148 (207)
107 cd02024 NRK1 Nicotinamide ribo 98.8 1.1E-08 2.4E-13 84.8 7.8 120 65-191 1-155 (187)
108 PRK11545 gntK gluconate kinase 98.8 2.4E-08 5.3E-13 80.8 9.4 110 69-189 1-113 (163)
109 PRK06696 uridine kinase; Valid 98.8 8.6E-09 1.9E-13 87.4 6.4 123 60-189 19-169 (223)
110 TIGR01663 PNK-3'Pase polynucle 98.8 6.2E-08 1.4E-12 91.7 12.7 101 60-189 366-470 (526)
111 PRK12338 hypothetical protein; 98.8 1E-07 2.2E-12 84.9 13.0 126 62-189 3-152 (319)
112 COG2019 AdkA Archaeal adenylat 98.8 1.8E-07 4E-12 75.4 13.0 115 63-186 4-129 (189)
113 COG0645 Predicted kinase [Gene 98.8 2.5E-07 5.5E-12 74.8 13.2 118 64-189 2-126 (170)
114 PRK00889 adenylylsulfate kinas 98.8 1.4E-07 3E-12 76.8 11.9 105 62-184 3-117 (175)
115 TIGR00017 cmk cytidylate kinas 98.7 1.1E-07 2.5E-12 80.5 10.2 39 63-101 2-40 (217)
116 cd02027 APSK Adenosine 5'-phos 98.7 2.6E-07 5.6E-12 73.6 11.2 103 66-186 2-116 (149)
117 PRK00023 cmk cytidylate kinase 98.7 4.3E-07 9.3E-12 77.4 13.2 38 63-100 4-41 (225)
118 PRK07429 phosphoribulokinase; 98.7 2.3E-08 4.9E-13 89.7 5.6 39 60-98 5-46 (327)
119 TIGR03575 selen_PSTK_euk L-ser 98.7 2.6E-07 5.6E-12 83.2 12.3 119 66-189 2-177 (340)
120 PRK13477 bifunctional pantoate 98.7 2.4E-07 5.1E-12 87.5 12.1 40 62-101 283-322 (512)
121 PF06414 Zeta_toxin: Zeta toxi 98.7 9.3E-08 2E-12 79.7 8.4 117 61-189 13-143 (199)
122 COG0572 Udk Uridine kinase [Nu 98.6 1.2E-07 2.6E-12 79.9 8.2 124 61-189 6-150 (218)
123 COG4088 Predicted nucleotide k 98.6 6.2E-07 1.3E-11 74.9 12.2 113 64-189 2-124 (261)
124 COG0283 Cmk Cytidylate kinase 98.6 9.9E-07 2.1E-11 74.0 13.0 38 63-100 4-41 (222)
125 PHA03132 thymidine kinase; Pro 98.6 1.5E-06 3.2E-11 82.9 15.5 128 62-189 256-424 (580)
126 PRK09270 nucleoside triphospha 98.6 2.4E-07 5.2E-12 78.9 9.1 118 61-188 31-182 (229)
127 cd02019 NK Nucleoside/nucleoti 98.6 1.1E-07 2.4E-12 66.0 5.7 59 66-175 2-63 (69)
128 TIGR00455 apsK adenylylsulfate 98.6 1E-06 2.2E-11 72.3 12.2 104 61-183 16-132 (184)
129 PTZ00301 uridine kinase; Provi 98.6 1.6E-07 3.4E-12 79.3 7.2 121 64-189 4-149 (210)
130 KOG3877 NADH:ubiquinone oxidor 98.6 1.7E-06 3.7E-11 75.1 13.4 124 61-189 69-240 (393)
131 cd02023 UMPK Uridine monophosp 98.6 3.1E-07 6.7E-12 76.2 8.8 35 65-99 1-38 (198)
132 KOG3327 Thymidylate kinase/ade 98.6 1.6E-06 3.6E-11 71.0 12.6 120 61-188 3-145 (208)
133 PHA00729 NTP-binding motif con 98.5 5.6E-07 1.2E-11 76.5 9.4 111 63-189 17-141 (226)
134 PRK09518 bifunctional cytidyla 98.5 5.7E-07 1.2E-11 88.6 10.7 38 64-101 2-39 (712)
135 PRK04220 2-phosphoglycerate ki 98.5 1.9E-06 4.2E-11 76.2 12.7 123 62-189 91-237 (301)
136 PLN02348 phosphoribulokinase 98.5 5.1E-08 1.1E-12 88.8 2.9 28 61-88 47-74 (395)
137 PF08433 KTI12: Chromatin asso 98.5 1.8E-06 3.9E-11 75.5 12.4 110 64-189 2-121 (270)
138 PF01583 APS_kinase: Adenylyls 98.5 1E-06 2.2E-11 70.9 9.9 105 62-184 1-117 (156)
139 PF01591 6PF2K: 6-phosphofruct 98.5 1.1E-06 2.4E-11 74.6 10.6 152 61-228 10-179 (222)
140 PRK05439 pantothenate kinase; 98.5 4.7E-07 1E-11 80.6 8.5 40 60-99 83-129 (311)
141 COG4639 Predicted kinase [Gene 98.5 2.5E-06 5.4E-11 68.1 11.4 111 64-187 3-117 (168)
142 PRK05537 bifunctional sulfate 98.5 1.1E-06 2.5E-11 84.2 11.3 112 58-185 387-510 (568)
143 PRK12337 2-phosphoglycerate ki 98.5 5.7E-06 1.2E-10 77.0 15.3 42 61-102 253-294 (475)
144 PF07931 CPT: Chloramphenicol 98.5 9.7E-07 2.1E-11 72.3 8.6 115 64-189 2-132 (174)
145 PRK03846 adenylylsulfate kinas 98.4 2.4E-06 5.2E-11 71.1 11.2 107 58-183 19-138 (198)
146 cd02025 PanK Pantothenate kina 98.4 1.3E-06 2.8E-11 74.2 9.2 34 65-98 1-41 (220)
147 PLN02772 guanylate kinase 98.4 6E-06 1.3E-10 75.4 13.9 137 62-225 134-288 (398)
148 PRK11860 bifunctional 3-phosph 98.4 2.2E-06 4.8E-11 83.8 11.3 40 62-101 441-480 (661)
149 PRK15453 phosphoribulokinase; 98.4 1.5E-06 3.2E-11 76.2 8.7 39 61-99 3-46 (290)
150 PF00485 PRK: Phosphoribulokin 98.4 1.2E-06 2.6E-11 72.6 7.7 110 65-189 1-149 (194)
151 PRK05416 glmZ(sRNA)-inactivati 98.4 9.1E-06 2E-10 71.8 13.5 97 62-187 5-106 (288)
152 cd02028 UMPK_like Uridine mono 98.4 7.7E-07 1.7E-11 73.1 6.0 36 65-100 1-41 (179)
153 PF00625 Guanylate_kin: Guanyl 98.3 3.9E-06 8.4E-11 68.9 9.4 137 63-225 2-155 (183)
154 TIGR00554 panK_bact pantothena 98.3 2.3E-06 4.9E-11 75.6 8.1 39 61-99 60-105 (290)
155 PRK05506 bifunctional sulfate 98.2 8.7E-06 1.9E-10 79.2 11.3 106 60-184 457-575 (632)
156 cd02026 PRK Phosphoribulokinas 98.2 3.8E-06 8.3E-11 73.6 7.3 35 65-99 1-38 (273)
157 COG0529 CysC Adenylylsulfate k 98.2 2.5E-05 5.4E-10 63.8 10.8 108 58-184 18-138 (197)
158 PRK05800 cobU adenosylcobinami 98.2 1.2E-06 2.6E-11 71.6 3.2 37 64-100 2-40 (170)
159 PLN02165 adenylate isopentenyl 98.1 1.4E-05 3.1E-10 71.6 9.5 38 60-97 40-77 (334)
160 TIGR02881 spore_V_K stage V sp 98.1 1.6E-05 3.4E-10 69.0 9.5 26 62-87 41-66 (261)
161 PRK12724 flagellar biosynthesi 98.1 1.8E-05 4E-10 73.0 10.2 106 62-177 222-344 (432)
162 PF03668 ATP_bind_2: P-loop AT 98.1 7.2E-05 1.6E-09 65.5 12.9 100 64-191 2-107 (284)
163 COG2074 2-phosphoglycerate kin 98.1 4.2E-05 9.2E-10 65.7 10.8 44 60-103 86-129 (299)
164 PF00004 AAA: ATPase family as 98.0 3.5E-06 7.5E-11 64.3 3.0 33 66-98 1-35 (132)
165 TIGR02640 gas_vesic_GvpN gas v 97.9 9.4E-05 2E-09 64.3 10.8 30 64-93 22-51 (262)
166 PF13189 Cytidylate_kin2: Cyti 97.9 0.00025 5.4E-09 58.2 12.7 116 65-188 1-135 (179)
167 PRK12269 bifunctional cytidyla 97.9 9.5E-06 2E-10 81.1 5.0 46 56-101 27-72 (863)
168 COG3709 Uncharacterized compon 97.9 0.00017 3.7E-09 58.2 10.8 114 62-191 4-139 (192)
169 PRK09169 hypothetical protein; 97.9 8E-05 1.7E-09 79.2 11.3 107 64-187 2111-2220(2316)
170 CHL00181 cbbX CbbX; Provisiona 97.9 3.6E-05 7.9E-10 67.9 7.7 27 61-87 57-83 (287)
171 PHA03136 thymidine kinase; Pro 97.9 0.00078 1.7E-08 61.3 15.5 128 62-189 35-214 (378)
172 PRK06761 hypothetical protein; 97.9 9.5E-05 2E-09 65.1 9.2 34 63-96 3-36 (282)
173 cd02029 PRK_like Phosphoribulo 97.9 5.9E-05 1.3E-09 65.8 7.8 35 65-99 1-40 (277)
174 KOG3308 Uncharacterized protei 97.8 0.00013 2.8E-09 60.7 8.9 121 63-191 4-152 (225)
175 PRK00091 miaA tRNA delta(2)-is 97.8 1.9E-05 4.1E-10 70.3 4.3 36 62-97 3-38 (307)
176 PTZ00322 6-phosphofructo-2-kin 97.8 0.00018 3.9E-09 70.5 11.4 32 63-94 215-246 (664)
177 COG1618 Predicted nucleotide k 97.8 1.1E-05 2.3E-10 65.0 2.4 42 62-103 4-45 (179)
178 COG1072 CoaA Panthothenate kin 97.8 3.7E-05 8.1E-10 66.8 5.8 129 59-189 78-233 (283)
179 cd00071 GMPK Guanosine monopho 97.8 5E-05 1.1E-09 59.6 5.8 23 66-88 2-24 (137)
180 PLN02318 phosphoribulokinase/u 97.7 9.8E-05 2.1E-09 70.8 8.0 38 61-98 63-101 (656)
181 PF01745 IPT: Isopentenyl tran 97.7 3.4E-05 7.3E-10 65.0 4.4 122 63-187 1-138 (233)
182 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00016 3.5E-09 69.0 9.1 116 65-185 225-370 (802)
183 PF13401 AAA_22: AAA domain; P 97.7 0.00012 2.6E-09 55.9 6.7 84 62-151 3-96 (131)
184 PF13521 AAA_28: AAA domain; P 97.7 1.9E-05 4.1E-10 63.4 2.2 33 65-100 1-33 (163)
185 smart00382 AAA ATPases associa 97.7 3.1E-05 6.8E-10 58.4 3.1 28 63-90 2-29 (148)
186 PLN02840 tRNA dimethylallyltra 97.7 4.6E-05 1E-09 70.4 4.6 36 61-96 19-54 (421)
187 COG1222 RPT1 ATP-dependent 26S 97.6 0.00019 4.1E-09 64.6 7.9 53 62-114 184-238 (406)
188 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00044 9.6E-09 65.3 10.7 33 62-94 258-290 (489)
189 PF05729 NACHT: NACHT domain 97.6 9.4E-05 2E-09 58.4 5.1 23 65-87 2-24 (166)
190 TIGR00390 hslU ATP-dependent p 97.6 5.2E-05 1.1E-09 70.0 3.7 35 62-96 46-80 (441)
191 TIGR02880 cbbX_cfxQ probable R 97.6 0.00022 4.8E-09 62.8 7.4 26 62-87 57-82 (284)
192 PRK05201 hslU ATP-dependent pr 97.6 0.0001 2.2E-09 68.1 5.3 35 62-96 49-83 (443)
193 COG4185 Uncharacterized protei 97.6 0.0018 3.9E-08 52.2 11.5 44 63-107 2-47 (187)
194 TIGR00174 miaA tRNA isopenteny 97.6 5.8E-05 1.3E-09 66.6 3.3 31 66-96 2-32 (287)
195 PF05496 RuvB_N: Holliday junc 97.6 5.9E-05 1.3E-09 64.1 3.2 32 63-94 50-81 (233)
196 KOG0730 AAA+-type ATPase [Post 97.5 0.00058 1.2E-08 65.6 9.8 124 61-186 466-612 (693)
197 PF07728 AAA_5: AAA domain (dy 97.5 6.6E-05 1.4E-09 58.4 3.0 28 66-93 2-29 (139)
198 PHA02575 1 deoxynucleoside mon 97.5 7.9E-05 1.7E-09 63.2 3.5 39 64-103 1-40 (227)
199 PLN02748 tRNA dimethylallyltra 97.5 0.00012 2.6E-09 68.7 4.9 36 61-96 20-55 (468)
200 KOG0744 AAA+-type ATPase [Post 97.5 0.00016 3.5E-09 64.3 5.3 28 63-90 177-204 (423)
201 PRK00771 signal recognition pa 97.5 0.00069 1.5E-08 63.2 9.6 27 61-87 93-119 (437)
202 PRK08099 bifunctional DNA-bind 97.4 0.00015 3.3E-09 66.9 4.1 35 59-93 215-249 (399)
203 PRK12377 putative replication 97.4 0.0021 4.5E-08 55.6 10.9 36 64-99 102-142 (248)
204 COG1660 Predicted P-loop-conta 97.4 0.0068 1.5E-07 52.5 13.7 100 64-191 2-108 (286)
205 TIGR00064 ftsY signal recognit 97.4 0.0017 3.7E-08 56.9 10.4 27 61-87 70-96 (272)
206 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00016 3.4E-09 65.6 3.9 28 62-89 77-104 (361)
207 TIGR03689 pup_AAA proteasome A 97.4 0.0015 3.2E-08 62.1 10.2 28 63-90 216-243 (512)
208 cd03115 SRP The signal recogni 97.3 0.0027 5.9E-08 51.2 10.4 23 65-87 2-24 (173)
209 cd00009 AAA The AAA+ (ATPases 97.3 0.00023 5E-09 54.1 3.9 32 63-94 19-53 (151)
210 cd00544 CobU Adenosylcobinamid 97.3 0.00042 9.2E-09 56.5 5.5 25 66-90 2-26 (169)
211 PRK14974 cell division protein 97.3 0.0037 8.1E-08 56.4 11.7 27 61-87 138-164 (336)
212 TIGR01650 PD_CobS cobaltochela 97.3 0.00021 4.5E-09 64.1 3.4 30 64-93 65-94 (327)
213 TIGR01425 SRP54_euk signal rec 97.3 0.0019 4E-08 60.1 9.8 27 61-87 98-124 (429)
214 PRK09087 hypothetical protein; 97.3 0.00084 1.8E-08 57.2 6.8 108 64-187 45-164 (226)
215 PRK03992 proteasome-activating 97.3 0.00026 5.7E-09 65.1 3.9 39 62-100 164-204 (389)
216 PRK08116 hypothetical protein; 97.2 0.0033 7.1E-08 55.0 10.4 37 64-100 115-156 (268)
217 PF03266 NTPase_1: NTPase; In 97.2 0.00025 5.4E-09 57.7 3.1 23 65-87 1-23 (168)
218 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00036 7.9E-09 54.7 3.9 29 62-90 21-49 (133)
219 PLN00020 ribulose bisphosphate 97.2 0.00033 7.1E-09 63.8 3.9 43 61-103 146-190 (413)
220 KOG0738 AAA+-type ATPase [Post 97.2 0.0034 7.3E-08 57.3 10.2 47 48-94 230-276 (491)
221 TIGR01526 nadR_NMN_Atrans nico 97.2 0.00037 8.1E-09 62.6 3.9 30 63-92 162-191 (325)
222 PRK05342 clpX ATP-dependent pr 97.2 0.0004 8.6E-09 64.4 4.2 33 63-95 108-140 (412)
223 TIGR02928 orc1/cdc6 family rep 97.2 0.0024 5.2E-08 57.6 9.2 26 62-87 39-64 (365)
224 KOG0731 AAA+-type ATPase conta 97.2 0.002 4.3E-08 63.4 9.1 38 63-100 344-383 (774)
225 PLN02796 D-glycerate 3-kinase 97.2 0.00036 7.8E-09 63.0 3.7 38 61-98 98-140 (347)
226 CHL00176 ftsH cell division pr 97.2 0.0034 7.3E-08 61.3 10.6 33 62-94 215-247 (638)
227 TIGR01243 CDC48 AAA family ATP 97.2 0.0028 6.1E-08 62.8 10.3 38 63-100 487-526 (733)
228 TIGR01242 26Sp45 26S proteasom 97.2 0.00041 9E-09 63.0 4.1 33 62-94 155-187 (364)
229 PF00448 SRP54: SRP54-type pro 97.1 0.00039 8.4E-09 58.0 3.5 26 63-88 1-26 (196)
230 PRK06620 hypothetical protein; 97.1 0.00097 2.1E-08 56.3 6.0 30 64-93 45-74 (214)
231 COG2256 MGS1 ATPase related to 97.1 0.0004 8.7E-09 63.3 3.8 33 62-94 47-79 (436)
232 TIGR00959 ffh signal recogniti 97.1 0.0034 7.4E-08 58.5 10.0 27 61-87 97-123 (428)
233 COG0324 MiaA tRNA delta(2)-iso 97.1 0.00048 1E-08 61.2 4.1 37 62-98 2-38 (308)
234 PTZ00454 26S protease regulato 97.1 0.00046 9.9E-09 63.7 4.0 33 62-94 178-210 (398)
235 PRK12723 flagellar biosynthesi 97.1 0.0025 5.3E-08 58.7 8.7 27 62-88 173-199 (388)
236 PF13173 AAA_14: AAA domain 97.1 0.00055 1.2E-08 52.8 3.7 96 64-183 3-104 (128)
237 TIGR01241 FtsH_fam ATP-depende 97.1 0.00045 9.8E-09 65.4 3.9 32 63-94 88-119 (495)
238 PRK06893 DNA replication initi 97.1 0.00092 2E-08 56.9 5.4 32 64-95 40-76 (229)
239 KOG0735 AAA+-type ATPase [Post 97.1 0.002 4.4E-08 62.7 8.1 131 48-184 685-843 (952)
240 COG1484 DnaC DNA replication p 97.1 0.0031 6.7E-08 54.7 8.5 39 62-100 104-147 (254)
241 TIGR00382 clpX endopeptidase C 97.1 0.00049 1.1E-08 63.7 3.6 32 63-94 116-147 (413)
242 PF13245 AAA_19: Part of AAA d 97.1 0.00061 1.3E-08 48.1 3.3 24 64-87 11-35 (76)
243 PRK10416 signal recognition pa 97.1 0.0014 3.1E-08 58.6 6.5 27 61-87 112-138 (318)
244 PF06309 Torsin: Torsin; Inte 97.1 0.00078 1.7E-08 52.2 4.1 30 58-87 48-77 (127)
245 COG0466 Lon ATP-dependent Lon 97.1 0.00052 1.1E-08 66.6 3.8 36 61-96 348-385 (782)
246 PHA02244 ATPase-like protein 97.0 0.00048 1E-08 62.7 3.4 35 64-98 120-154 (383)
247 TIGR00635 ruvB Holliday juncti 97.0 0.00066 1.4E-08 59.8 4.2 30 62-91 29-58 (305)
248 TIGR01243 CDC48 AAA family ATP 97.0 0.0034 7.4E-08 62.3 9.5 33 62-94 211-243 (733)
249 PRK14961 DNA polymerase III su 97.0 0.0077 1.7E-07 54.8 11.0 28 63-90 38-65 (363)
250 COG0465 HflB ATP-dependent Zn 97.0 0.0056 1.2E-07 58.9 10.4 125 61-185 181-329 (596)
251 PRK10867 signal recognition pa 97.0 0.0081 1.8E-07 56.0 11.2 27 61-87 98-124 (433)
252 KOG0734 AAA+-type ATPase conta 97.0 0.0012 2.7E-08 62.3 5.8 33 62-94 336-368 (752)
253 PF03029 ATP_bind_1: Conserved 97.0 0.00041 8.8E-09 59.6 2.3 22 68-89 1-22 (238)
254 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0015 3.2E-08 55.9 5.7 39 56-95 15-58 (237)
255 KOG0739 AAA+-type ATPase [Post 97.0 0.0019 4.1E-08 57.2 6.1 52 64-115 167-220 (439)
256 PTZ00361 26 proteosome regulat 97.0 0.00077 1.7E-08 62.9 4.0 33 62-94 216-248 (438)
257 PRK04195 replication factor C 97.0 0.00078 1.7E-08 63.6 4.1 32 63-94 39-70 (482)
258 COG2255 RuvB Holliday junction 96.9 0.00073 1.6E-08 59.2 3.5 28 64-91 53-80 (332)
259 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0036 7.7E-08 60.1 8.2 57 47-103 528-587 (802)
260 COG1223 Predicted ATPase (AAA+ 96.9 0.00058 1.3E-08 59.3 2.8 42 62-103 150-193 (368)
261 PRK00080 ruvB Holliday junctio 96.9 0.00079 1.7E-08 60.3 3.8 30 63-92 51-80 (328)
262 PF00910 RNA_helicase: RNA hel 96.9 0.00061 1.3E-08 51.1 2.6 23 66-88 1-23 (107)
263 PLN03046 D-glycerate 3-kinase; 96.9 0.0008 1.7E-08 62.2 3.7 38 61-98 210-252 (460)
264 PRK12323 DNA polymerase III su 96.9 0.023 5E-07 55.5 13.8 28 62-89 37-64 (700)
265 COG3896 Chloramphenicol 3-O-ph 96.9 0.01 2.3E-07 47.9 9.6 126 62-188 22-161 (205)
266 TIGR03015 pepcterm_ATPase puta 96.9 0.0019 4E-08 55.7 5.9 27 62-88 42-68 (269)
267 PRK00411 cdc6 cell division co 96.9 0.0077 1.7E-07 54.9 10.2 26 62-87 54-79 (394)
268 PRK07003 DNA polymerase III su 96.9 0.0086 1.9E-07 59.2 10.8 28 63-90 38-65 (830)
269 PRK07952 DNA replication prote 96.9 0.01 2.2E-07 51.2 10.1 35 65-99 101-140 (244)
270 PRK04328 hypothetical protein; 96.9 0.0017 3.7E-08 56.1 5.3 29 57-86 18-46 (249)
271 PRK08181 transposase; Validate 96.9 0.012 2.6E-07 51.5 10.7 39 62-100 105-148 (269)
272 COG1219 ClpX ATP-dependent pro 96.9 0.00088 1.9E-08 59.6 3.5 33 62-94 96-128 (408)
273 PF10662 PduV-EutP: Ethanolami 96.9 0.00074 1.6E-08 53.5 2.8 24 63-86 1-24 (143)
274 PF06745 KaiC: KaiC; InterPro 96.9 0.0012 2.5E-08 55.8 4.1 39 57-96 14-58 (226)
275 PF07724 AAA_2: AAA domain (Cd 96.9 0.001 2.2E-08 54.3 3.5 27 63-89 3-29 (171)
276 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.00088 1.9E-08 56.2 3.2 37 62-98 37-78 (226)
277 PRK13342 recombination factor 96.9 0.001 2.3E-08 61.5 4.0 33 62-94 35-67 (413)
278 PF08477 Miro: Miro-like prote 96.9 0.00097 2.1E-08 49.9 3.1 24 65-88 1-24 (119)
279 KOG2004 Mitochondrial ATP-depe 96.8 0.001 2.2E-08 64.7 3.8 37 61-97 436-474 (906)
280 PRK06526 transposase; Provisio 96.8 0.0012 2.5E-08 57.4 3.8 39 62-100 97-140 (254)
281 COG1224 TIP49 DNA helicase TIP 96.8 0.0011 2.5E-08 59.7 3.6 53 62-114 64-120 (450)
282 PRK06067 flagellar accessory p 96.8 0.002 4.4E-08 54.7 5.1 38 57-95 20-62 (234)
283 PF07726 AAA_3: ATPase family 96.8 0.00061 1.3E-08 53.0 1.6 29 65-93 1-29 (131)
284 PF01695 IstB_IS21: IstB-like 96.8 0.0013 2.8E-08 54.0 3.6 39 62-100 46-89 (178)
285 KOG1533 Predicted GTPase [Gene 96.8 0.00073 1.6E-08 57.7 2.2 22 66-87 5-26 (290)
286 TIGR02655 circ_KaiC circadian 96.8 0.0011 2.4E-08 62.6 3.7 86 62-151 262-362 (484)
287 PRK08903 DnaA regulatory inact 96.8 0.0013 2.9E-08 55.5 3.7 36 63-98 42-82 (227)
288 PF03215 Rad17: Rad17 cell cyc 96.8 0.0013 2.8E-08 62.6 3.9 30 63-92 45-74 (519)
289 PRK14729 miaA tRNA delta(2)-is 96.7 0.0016 3.4E-08 57.9 4.1 34 63-97 4-37 (300)
290 KOG0736 Peroxisome assembly fa 96.7 0.01 2.2E-07 58.4 9.7 56 48-103 690-747 (953)
291 PRK08533 flagellar accessory p 96.7 0.0027 5.8E-08 54.2 5.4 25 62-86 23-47 (230)
292 COG0464 SpoVK ATPases of the A 96.7 0.0013 2.7E-08 62.2 3.6 33 62-94 275-307 (494)
293 KOG0707 Guanylate kinase [Nucl 96.7 0.0058 1.3E-07 51.9 7.0 31 64-94 38-69 (231)
294 PRK12402 replication factor C 96.7 0.0017 3.6E-08 57.8 4.0 24 65-88 38-61 (337)
295 TIGR00101 ureG urease accessor 96.7 0.0016 3.4E-08 54.4 3.6 26 63-88 1-26 (199)
296 cd01120 RecA-like_NTPases RecA 96.7 0.0013 2.8E-08 51.4 2.8 22 66-87 2-23 (165)
297 COG3911 Predicted ATPase [Gene 96.7 0.0015 3.3E-08 52.1 3.2 26 61-86 7-32 (183)
298 COG1474 CDC6 Cdc6-related prot 96.7 0.021 4.6E-07 52.2 11.0 26 62-87 41-66 (366)
299 PRK09183 transposase/IS protei 96.7 0.0017 3.6E-08 56.5 3.7 38 61-98 100-142 (259)
300 cd01124 KaiC KaiC is a circadi 96.7 0.00075 1.6E-08 54.8 1.4 30 66-95 2-36 (187)
301 cd04163 Era Era subfamily. Er 96.7 0.0015 3.2E-08 50.9 3.0 24 63-86 3-26 (168)
302 KOG0780 Signal recognition par 96.6 0.024 5.2E-07 51.8 10.9 110 58-177 96-225 (483)
303 PHA03134 thymidine kinase; Pro 96.6 0.15 3.3E-06 45.9 15.8 128 61-189 11-186 (340)
304 PRK10751 molybdopterin-guanine 96.6 0.0014 3E-08 53.7 2.6 28 62-89 5-32 (173)
305 COG1220 HslU ATP-dependent pro 96.6 0.0018 3.9E-08 58.2 3.5 33 62-94 49-81 (444)
306 PF02367 UPF0079: Uncharacteri 96.6 0.0024 5.2E-08 49.4 3.8 29 62-90 14-42 (123)
307 COG0552 FtsY Signal recognitio 96.6 0.026 5.5E-07 50.7 10.7 42 60-101 136-181 (340)
308 PRK13695 putative NTPase; Prov 96.6 0.0018 3.9E-08 52.5 3.3 24 64-87 1-24 (174)
309 PRK05973 replicative DNA helic 96.6 0.003 6.5E-08 54.3 4.7 55 38-95 40-101 (237)
310 PF13191 AAA_16: AAA ATPase do 96.6 0.0017 3.8E-08 52.2 3.1 27 61-87 22-48 (185)
311 PRK08084 DNA replication initi 96.6 0.0017 3.7E-08 55.5 3.0 33 64-96 46-83 (235)
312 PF00931 NB-ARC: NB-ARC domain 96.6 0.0058 1.2E-07 53.0 6.4 84 61-153 17-112 (287)
313 PRK15455 PrkA family serine pr 96.6 0.0018 4E-08 62.0 3.4 26 62-87 102-127 (644)
314 PRK09435 membrane ATPase/prote 96.6 0.0022 4.7E-08 57.8 3.8 27 61-87 54-80 (332)
315 TIGR00763 lon ATP-dependent pr 96.6 0.002 4.3E-08 64.4 3.8 32 62-93 346-377 (775)
316 COG1855 ATPase (PilT family) [ 96.6 0.0017 3.7E-08 60.2 3.1 23 65-87 265-287 (604)
317 PRK14962 DNA polymerase III su 96.6 0.0023 5.1E-08 60.3 4.1 28 63-90 36-63 (472)
318 PRK11034 clpA ATP-dependent Cl 96.6 0.0023 5E-08 63.6 4.2 33 60-92 484-517 (758)
319 KOG3062 RNA polymerase II elon 96.6 0.018 3.9E-07 49.1 8.8 25 63-87 1-25 (281)
320 cd01131 PilT Pilus retraction 96.6 0.002 4.4E-08 53.6 3.2 24 65-88 3-26 (198)
321 PF01926 MMR_HSR1: 50S ribosom 96.5 0.002 4.3E-08 48.4 2.9 21 65-85 1-21 (116)
322 PF06068 TIP49: TIP49 C-termin 96.5 0.00078 1.7E-08 61.2 0.6 41 62-102 49-93 (398)
323 KOG1969 DNA replication checkp 96.5 0.0027 5.9E-08 61.9 4.3 33 62-94 325-357 (877)
324 PLN03025 replication factor C 96.5 0.0023 5.1E-08 57.1 3.6 25 64-88 35-59 (319)
325 PRK08939 primosomal protein Dn 96.5 0.0099 2.2E-07 53.0 7.5 39 62-100 155-198 (306)
326 TIGR03499 FlhF flagellar biosy 96.5 0.0026 5.7E-08 56.0 3.7 26 62-87 193-218 (282)
327 CHL00206 ycf2 Ycf2; Provisiona 96.5 0.0021 4.6E-08 68.4 3.6 38 62-99 1629-1668(2281)
328 PRK14086 dnaA chromosomal repl 96.5 0.014 3E-07 56.6 8.8 35 66-100 317-358 (617)
329 TIGR02397 dnaX_nterm DNA polym 96.5 0.048 1E-06 48.9 11.9 29 62-90 35-63 (355)
330 COG1126 GlnQ ABC-type polar am 96.5 0.0023 4.9E-08 54.2 3.0 24 61-84 26-49 (240)
331 KOG0737 AAA+-type ATPase [Post 96.5 0.002 4.3E-08 58.2 2.8 33 62-94 126-158 (386)
332 PRK13768 GTPase; Provisional 96.5 0.0027 5.7E-08 55.0 3.5 25 63-87 2-26 (253)
333 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0029 6.2E-08 47.8 3.2 23 62-84 14-36 (107)
334 PF03308 ArgK: ArgK protein; 96.4 0.0029 6.3E-08 54.9 3.5 27 61-87 27-53 (266)
335 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.0062 1.3E-07 51.4 5.5 34 62-95 19-57 (229)
336 PRK14722 flhF flagellar biosyn 96.4 0.0028 6.2E-08 57.9 3.6 27 61-87 135-161 (374)
337 KOG0651 26S proteasome regulat 96.4 0.0068 1.5E-07 53.9 5.8 43 62-104 165-209 (388)
338 cd04155 Arl3 Arl3 subfamily. 96.4 0.0028 6E-08 50.5 3.2 25 62-86 13-37 (173)
339 TIGR00362 DnaA chromosomal rep 96.4 0.012 2.5E-07 54.3 7.6 37 64-100 137-180 (405)
340 TIGR02639 ClpA ATP-dependent C 96.4 0.0033 7.1E-08 62.4 4.2 38 60-97 480-520 (731)
341 KOG0635 Adenosine 5'-phosphosu 96.4 0.026 5.6E-07 45.3 8.4 109 61-184 29-146 (207)
342 cd01130 VirB11-like_ATPase Typ 96.4 0.0029 6.3E-08 52.0 3.2 27 62-88 24-50 (186)
343 PF13479 AAA_24: AAA domain 96.4 0.0021 4.6E-08 54.1 2.4 31 62-95 2-32 (213)
344 PRK14088 dnaA chromosomal repl 96.4 0.0099 2.1E-07 55.6 7.1 37 65-101 132-175 (440)
345 PRK06921 hypothetical protein; 96.4 0.0049 1.1E-07 53.8 4.8 38 62-99 116-159 (266)
346 TIGR02237 recomb_radB DNA repa 96.4 0.0041 9E-08 51.7 4.1 35 62-96 11-50 (209)
347 PRK10787 DNA-binding ATP-depen 96.4 0.0032 6.8E-08 62.9 3.9 32 62-93 348-379 (784)
348 PHA03135 thymidine kinase; Pro 96.4 0.26 5.7E-06 44.5 15.7 26 61-86 8-33 (343)
349 PRK00149 dnaA chromosomal repl 96.4 0.013 2.8E-07 54.8 7.9 36 65-100 150-192 (450)
350 PHA02544 44 clamp loader, smal 96.4 0.0037 8E-08 55.4 4.0 30 62-91 42-71 (316)
351 PF01078 Mg_chelatase: Magnesi 96.4 0.0025 5.4E-08 53.5 2.6 25 63-87 22-46 (206)
352 cd03116 MobB Molybdenum is an 96.3 0.0037 8.1E-08 50.4 3.5 26 63-88 1-26 (159)
353 PF03205 MobB: Molybdopterin g 96.3 0.0035 7.6E-08 49.4 3.2 24 64-87 1-24 (140)
354 PRK13341 recombination factor 96.3 0.0037 8.1E-08 61.8 4.1 35 62-96 51-85 (725)
355 PF08303 tRNA_lig_kinase: tRNA 96.3 0.0028 6.1E-08 51.3 2.7 32 66-97 2-34 (168)
356 COG0714 MoxR-like ATPases [Gen 96.3 0.0032 6.9E-08 56.4 3.4 31 63-93 43-73 (329)
357 PRK04296 thymidine kinase; Pro 96.3 0.0036 7.7E-08 51.8 3.3 25 63-87 2-26 (190)
358 TIGR02655 circ_KaiC circadian 96.3 0.0066 1.4E-07 57.4 5.5 28 57-85 16-43 (484)
359 KOG2702 Predicted panthothenat 96.3 0.0042 9.1E-08 53.1 3.7 129 60-189 116-281 (323)
360 TIGR00073 hypB hydrogenase acc 96.3 0.0039 8.5E-08 52.1 3.6 28 61-88 20-47 (207)
361 cd01394 radB RadB. The archaea 96.3 0.005 1.1E-07 51.6 4.1 34 62-95 18-56 (218)
362 smart00173 RAS Ras subfamily o 96.3 0.0034 7.5E-08 49.5 3.0 21 65-85 2-22 (164)
363 KOG1970 Checkpoint RAD17-RFC c 96.3 0.0038 8.3E-08 59.1 3.7 31 62-92 109-139 (634)
364 KOG0743 AAA+-type ATPase [Post 96.3 0.0028 6E-08 58.7 2.7 29 66-94 238-266 (457)
365 TIGR00750 lao LAO/AO transport 96.3 0.0041 9E-08 55.1 3.8 27 61-87 32-58 (300)
366 PRK06645 DNA polymerase III su 96.3 0.0038 8.3E-08 59.3 3.7 30 62-91 42-71 (507)
367 COG0378 HypB Ni2+-binding GTPa 96.3 0.004 8.6E-08 51.8 3.3 25 63-87 13-37 (202)
368 PF00005 ABC_tran: ABC transpo 96.3 0.0031 6.7E-08 48.6 2.5 26 62-87 10-35 (137)
369 COG4240 Predicted kinase [Gene 96.3 0.0046 9.9E-08 52.8 3.7 39 61-99 48-92 (300)
370 KOG0726 26S proteasome regulat 96.3 0.012 2.6E-07 52.1 6.3 51 62-112 218-270 (440)
371 TIGR01618 phage_P_loop phage n 96.3 0.0026 5.7E-08 54.0 2.3 25 61-85 10-34 (220)
372 cd01983 Fer4_NifH The Fer4_Nif 96.2 0.0045 9.8E-08 43.9 3.2 30 66-95 2-34 (99)
373 PRK11331 5-methylcytosine-spec 96.2 0.0035 7.6E-08 58.5 3.2 27 62-88 193-219 (459)
374 cd04138 H_N_K_Ras_like H-Ras/N 96.2 0.004 8.7E-08 48.6 3.1 23 64-86 2-24 (162)
375 PRK09302 circadian clock prote 96.2 0.0065 1.4E-07 57.7 5.0 90 58-151 269-372 (509)
376 PRK14956 DNA polymerase III su 96.2 0.0047 1E-07 58.2 3.9 28 63-90 40-67 (484)
377 cd04119 RJL RJL (RabJ-Like) su 96.2 0.0039 8.5E-08 48.9 2.9 23 64-86 1-23 (168)
378 KOG1532 GTPase XAB1, interacts 96.2 0.0053 1.1E-07 53.7 3.8 44 57-100 13-61 (366)
379 cd03292 ABC_FtsE_transporter F 96.2 0.0041 8.9E-08 51.8 3.1 27 61-87 25-51 (214)
380 PTZ00202 tuzin; Provisional 96.2 0.023 4.9E-07 53.2 8.1 29 62-90 285-313 (550)
381 PRK06835 DNA replication prote 96.2 0.004 8.6E-08 56.1 3.2 37 64-100 184-225 (329)
382 TIGR01166 cbiO cobalt transpor 96.2 0.0042 9.2E-08 50.9 3.1 27 61-87 16-42 (190)
383 PRK14963 DNA polymerase III su 96.2 0.0041 9E-08 59.1 3.4 28 62-89 35-62 (504)
384 smart00175 RAB Rab subfamily o 96.2 0.004 8.6E-08 48.9 2.8 23 64-86 1-23 (164)
385 PRK07764 DNA polymerase III su 96.2 0.042 9.1E-07 55.3 10.6 28 63-90 37-64 (824)
386 PRK09361 radB DNA repair and r 96.2 0.0064 1.4E-07 51.2 4.2 35 61-95 21-60 (225)
387 TIGR00176 mobB molybdopterin-g 96.2 0.0042 9E-08 49.9 2.9 22 66-87 2-23 (155)
388 KOG0729 26S proteasome regulat 96.2 0.0072 1.6E-07 52.8 4.5 46 62-107 210-257 (435)
389 PRK07940 DNA polymerase III su 96.2 0.09 2E-06 48.5 12.0 29 62-90 35-63 (394)
390 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.0044 9.5E-08 51.9 3.2 27 61-87 28-54 (218)
391 COG1136 SalX ABC-type antimicr 96.2 0.0045 9.6E-08 52.8 3.2 25 61-85 29-53 (226)
392 PRK10733 hflB ATP-dependent me 96.1 0.0044 9.5E-08 60.7 3.5 30 65-94 187-216 (644)
393 PF13086 AAA_11: AAA domain; P 96.1 0.0044 9.5E-08 51.4 3.0 23 65-87 19-41 (236)
394 cd04164 trmE TrmE (MnmE, ThdF, 96.1 0.0046 1E-07 47.9 3.0 24 63-86 1-24 (157)
395 cd04136 Rap_like Rap-like subf 96.1 0.0049 1.1E-07 48.4 3.1 22 64-85 2-23 (163)
396 TIGR00960 3a0501s02 Type II (G 96.1 0.0046 1E-07 51.7 3.1 27 61-87 27-53 (216)
397 cd03301 ABC_MalK_N The N-termi 96.1 0.0048 1.1E-07 51.4 3.2 27 61-87 24-50 (213)
398 TIGR03345 VI_ClpV1 type VI sec 96.1 0.006 1.3E-07 61.5 4.4 42 59-100 591-638 (852)
399 COG0541 Ffh Signal recognition 96.1 0.02 4.3E-07 53.0 7.3 28 60-87 97-124 (451)
400 cd01128 rho_factor Transcripti 96.1 0.0054 1.2E-07 53.1 3.5 29 61-89 14-42 (249)
401 TIGR00231 small_GTP small GTP- 96.1 0.0051 1.1E-07 47.0 3.1 24 64-87 2-25 (161)
402 cd03225 ABC_cobalt_CbiO_domain 96.1 0.0051 1.1E-07 51.2 3.2 27 61-87 25-51 (211)
403 cd00876 Ras Ras family. The R 96.1 0.004 8.7E-08 48.5 2.4 21 65-85 1-21 (160)
404 cd03263 ABC_subfamily_A The AB 96.1 0.005 1.1E-07 51.6 3.2 27 61-87 26-52 (220)
405 TIGR02673 FtsE cell division A 96.1 0.005 1.1E-07 51.3 3.1 27 61-87 26-52 (214)
406 PRK14490 putative bifunctional 96.1 0.0053 1.1E-07 56.0 3.5 29 62-90 4-32 (369)
407 PF04665 Pox_A32: Poxvirus A32 96.1 0.0058 1.3E-07 52.6 3.5 26 62-87 12-37 (241)
408 TIGR03608 L_ocin_972_ABC putat 96.1 0.0051 1.1E-07 51.0 3.1 27 61-87 22-48 (206)
409 cd00154 Rab Rab family. Rab G 96.1 0.0046 1E-07 47.6 2.7 23 64-86 1-23 (159)
410 cd04113 Rab4 Rab4 subfamily. 96.1 0.005 1.1E-07 48.5 2.8 22 64-85 1-22 (161)
411 KOG0728 26S proteasome regulat 96.1 0.03 6.6E-07 48.6 7.7 48 61-108 179-228 (404)
412 cd03224 ABC_TM1139_LivF_branch 96.1 0.0053 1.2E-07 51.4 3.2 27 61-87 24-50 (222)
413 cd03264 ABC_drug_resistance_li 96.1 0.0048 1E-07 51.4 2.9 25 62-87 25-49 (211)
414 cd03219 ABC_Mj1267_LivG_branch 96.0 0.0049 1.1E-07 52.2 2.9 27 61-87 24-50 (236)
415 cd00157 Rho Rho (Ras homology) 96.0 0.0052 1.1E-07 48.6 2.9 23 64-86 1-23 (171)
416 cd03261 ABC_Org_Solvent_Resist 96.0 0.0053 1.1E-07 52.1 3.2 27 61-87 24-50 (235)
417 PHA02624 large T antigen; Prov 96.0 0.0071 1.5E-07 58.3 4.3 34 62-95 430-463 (647)
418 cd03262 ABC_HisP_GlnQ_permease 96.0 0.0055 1.2E-07 51.0 3.2 27 61-87 24-50 (213)
419 cd04139 RalA_RalB RalA/RalB su 96.0 0.0053 1.1E-07 48.1 2.9 21 65-85 2-22 (164)
420 PRK05642 DNA replication initi 96.0 0.0061 1.3E-07 52.1 3.4 36 64-99 46-86 (234)
421 cd03269 ABC_putative_ATPase Th 96.0 0.0057 1.2E-07 50.9 3.2 27 61-87 24-50 (210)
422 COG4619 ABC-type uncharacteriz 96.0 0.0057 1.2E-07 50.1 3.0 26 61-86 27-52 (223)
423 COG1703 ArgK Putative periplas 96.0 0.0059 1.3E-07 54.0 3.3 27 61-87 49-75 (323)
424 cd03256 ABC_PhnC_transporter A 96.0 0.0055 1.2E-07 52.0 3.2 27 61-87 25-51 (241)
425 cd03258 ABC_MetN_methionine_tr 96.0 0.0056 1.2E-07 51.8 3.2 27 61-87 29-55 (233)
426 cd03259 ABC_Carb_Solutes_like 96.0 0.0058 1.3E-07 51.0 3.2 27 61-87 24-50 (213)
427 PRK11889 flhF flagellar biosyn 96.0 0.0062 1.3E-07 56.2 3.6 26 62-87 240-265 (436)
428 cd03229 ABC_Class3 This class 96.0 0.006 1.3E-07 49.6 3.2 27 61-87 24-50 (178)
429 PF01443 Viral_helicase1: Vira 96.0 0.0043 9.2E-08 52.2 2.4 22 66-87 1-22 (234)
430 PRK13541 cytochrome c biogenes 96.0 0.0059 1.3E-07 50.4 3.2 26 62-87 25-50 (195)
431 TIGR00678 holB DNA polymerase 96.0 0.072 1.6E-06 43.5 9.6 28 62-89 13-40 (188)
432 TIGR02211 LolD_lipo_ex lipopro 96.0 0.0059 1.3E-07 51.2 3.2 27 61-87 29-55 (221)
433 cd03296 ABC_CysA_sulfate_impor 96.0 0.0059 1.3E-07 52.0 3.2 27 61-87 26-52 (239)
434 cd01895 EngA2 EngA2 subfamily. 96.0 0.0051 1.1E-07 48.3 2.6 24 63-86 2-25 (174)
435 cd03260 ABC_PstB_phosphate_tra 96.0 0.0061 1.3E-07 51.4 3.2 27 61-87 24-50 (227)
436 TIGR02315 ABC_phnC phosphonate 96.0 0.006 1.3E-07 51.9 3.2 27 61-87 26-52 (243)
437 TIGR02782 TrbB_P P-type conjug 96.0 0.0068 1.5E-07 53.8 3.6 35 63-97 132-171 (299)
438 cd03247 ABCC_cytochrome_bd The 96.0 0.0064 1.4E-07 49.4 3.2 26 62-87 27-52 (178)
439 cd03226 ABC_cobalt_CbiO_domain 96.0 0.006 1.3E-07 50.6 3.1 27 61-87 24-50 (205)
440 PRK14964 DNA polymerase III su 96.0 0.0064 1.4E-07 57.5 3.6 28 63-90 35-62 (491)
441 cd03257 ABC_NikE_OppD_transpor 96.0 0.0059 1.3E-07 51.3 3.0 27 61-87 29-55 (228)
442 COG0467 RAD55 RecA-superfamily 96.0 0.004 8.6E-08 53.9 2.0 36 58-94 19-59 (260)
443 PRK10646 ADP-binding protein; 96.0 0.0091 2E-07 47.9 3.9 29 62-90 27-55 (153)
444 PRK14960 DNA polymerase III su 96.0 0.008 1.7E-07 58.6 4.2 28 63-90 37-64 (702)
445 PRK11629 lolD lipoprotein tran 95.9 0.0063 1.4E-07 51.6 3.2 27 61-87 33-59 (233)
446 PRK13540 cytochrome c biogenes 95.9 0.0065 1.4E-07 50.3 3.2 27 61-87 25-51 (200)
447 cd01862 Rab7 Rab7 subfamily. 95.9 0.0056 1.2E-07 48.5 2.7 23 64-86 1-23 (172)
448 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.006 1.3E-07 51.2 3.0 27 61-87 28-54 (220)
449 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.007 1.5E-07 52.5 3.5 38 57-95 31-73 (259)
450 PRK14957 DNA polymerase III su 95.9 0.0078 1.7E-07 57.7 4.0 27 63-89 38-64 (546)
451 TIGR03864 PQQ_ABC_ATP ABC tran 95.9 0.0065 1.4E-07 51.6 3.2 27 61-87 25-51 (236)
452 cd03218 ABC_YhbG The ABC trans 95.9 0.0065 1.4E-07 51.3 3.2 27 61-87 24-50 (232)
453 PRK14955 DNA polymerase III su 95.9 0.0078 1.7E-07 55.5 3.9 28 63-90 38-65 (397)
454 TIGR02323 CP_lyasePhnK phospho 95.9 0.0061 1.3E-07 52.3 3.0 27 61-87 27-53 (253)
455 PRK14493 putative bifunctional 95.9 0.007 1.5E-07 53.1 3.4 24 64-87 2-25 (274)
456 cd04115 Rab33B_Rab33A Rab33B/R 95.9 0.007 1.5E-07 48.4 3.2 23 63-85 2-24 (170)
457 cd03223 ABCD_peroxisomal_ALDP 95.9 0.0069 1.5E-07 48.8 3.2 27 61-87 25-51 (166)
458 PRK14949 DNA polymerase III su 95.9 0.0067 1.5E-07 60.9 3.6 28 63-90 38-65 (944)
459 cd03265 ABC_DrrA DrrA is the A 95.9 0.0067 1.5E-07 50.9 3.2 27 61-87 24-50 (220)
460 cd03230 ABC_DR_subfamily_A Thi 95.9 0.0069 1.5E-07 49.0 3.1 27 61-87 24-50 (173)
461 TIGR02525 plasmid_TraJ plasmid 95.9 0.037 8.1E-07 50.7 8.2 87 65-160 151-242 (372)
462 PRK11264 putative amino-acid A 95.9 0.0066 1.4E-07 51.9 3.2 27 61-87 27-53 (250)
463 PRK11701 phnK phosphonate C-P 95.9 0.0062 1.4E-07 52.5 3.0 27 61-87 30-56 (258)
464 cd03214 ABC_Iron-Siderophores_ 95.9 0.0071 1.5E-07 49.3 3.2 27 61-87 23-49 (180)
465 cd03232 ABC_PDR_domain2 The pl 95.9 0.0067 1.4E-07 50.0 3.1 25 61-85 31-55 (192)
466 TIGR03410 urea_trans_UrtE urea 95.9 0.0065 1.4E-07 51.3 3.1 27 61-87 24-50 (230)
467 cd03235 ABC_Metallic_Cations A 95.9 0.0061 1.3E-07 50.9 2.9 27 61-87 23-49 (213)
468 PRK10247 putative ABC transpor 95.9 0.0068 1.5E-07 51.2 3.2 27 61-87 31-57 (225)
469 PRK14952 DNA polymerase III su 95.9 0.064 1.4E-06 51.9 10.1 29 62-90 34-62 (584)
470 PRK10463 hydrogenase nickel in 95.9 0.0083 1.8E-07 53.0 3.7 27 61-87 102-128 (290)
471 PRK10865 protein disaggregatio 95.9 0.008 1.7E-07 60.7 4.1 41 59-99 593-639 (857)
472 TIGR02770 nickel_nikD nickel i 95.9 0.0067 1.4E-07 51.4 3.1 26 62-87 11-36 (230)
473 PRK14250 phosphate ABC transpo 95.9 0.0068 1.5E-07 51.7 3.1 26 62-87 28-53 (241)
474 cd04145 M_R_Ras_like M-Ras/R-R 95.9 0.0079 1.7E-07 47.2 3.3 24 63-86 2-25 (164)
475 COG3839 MalK ABC-type sugar tr 95.9 0.0067 1.4E-07 54.7 3.2 24 62-85 28-51 (338)
476 cd03246 ABCC_Protease_Secretio 95.9 0.0075 1.6E-07 48.8 3.2 27 61-87 26-52 (173)
477 cd03215 ABC_Carb_Monos_II This 95.9 0.007 1.5E-07 49.4 3.0 26 62-87 25-50 (182)
478 PRK06995 flhF flagellar biosyn 95.9 0.0075 1.6E-07 56.9 3.6 26 62-87 255-280 (484)
479 COG1116 TauB ABC-type nitrate/ 95.9 0.0072 1.6E-07 52.0 3.2 26 61-86 27-52 (248)
480 cd03234 ABCG_White The White s 95.9 0.0075 1.6E-07 50.9 3.3 28 61-88 31-58 (226)
481 TIGR03771 anch_rpt_ABC anchore 95.9 0.0071 1.5E-07 51.0 3.1 26 62-87 5-30 (223)
482 PRK14242 phosphate transporter 95.9 0.0069 1.5E-07 52.0 3.1 27 61-87 30-56 (253)
483 COG3842 PotA ABC-type spermidi 95.9 0.0068 1.5E-07 54.9 3.1 25 62-86 30-54 (352)
484 PRK05707 DNA polymerase III su 95.9 0.078 1.7E-06 47.7 9.9 30 61-90 20-49 (328)
485 cd03268 ABC_BcrA_bacitracin_re 95.9 0.0075 1.6E-07 50.1 3.2 27 61-87 24-50 (208)
486 PRK09302 circadian clock prote 95.9 0.014 3.1E-07 55.4 5.4 28 57-85 26-53 (509)
487 cd04137 RheB Rheb (Ras Homolog 95.9 0.0072 1.6E-07 48.6 3.0 23 64-86 2-24 (180)
488 TIGR01978 sufC FeS assembly AT 95.9 0.0072 1.6E-07 51.4 3.1 26 61-86 24-49 (243)
489 PRK14969 DNA polymerase III su 95.9 0.0089 1.9E-07 57.2 4.1 29 62-90 37-65 (527)
490 PRK14267 phosphate ABC transpo 95.8 0.0072 1.6E-07 51.8 3.1 27 61-87 28-54 (253)
491 cd00879 Sar1 Sar1 subfamily. 95.8 0.0081 1.7E-07 48.8 3.3 24 62-85 18-41 (190)
492 cd03228 ABCC_MRP_Like The MRP 95.8 0.008 1.7E-07 48.6 3.2 27 61-87 26-52 (171)
493 COG0542 clpA ATP-binding subun 95.8 0.011 2.4E-07 58.6 4.7 44 58-101 515-564 (786)
494 TIGR03005 ectoine_ehuA ectoine 95.8 0.0073 1.6E-07 51.8 3.1 27 61-87 24-50 (252)
495 cd04177 RSR1 RSR1 subgroup. R 95.8 0.0076 1.7E-07 48.0 3.1 23 64-86 2-24 (168)
496 COG5192 BMS1 GTP-binding prote 95.8 0.0071 1.5E-07 57.6 3.2 27 62-88 68-94 (1077)
497 PF00025 Arf: ADP-ribosylation 95.8 0.0081 1.8E-07 48.7 3.2 25 61-85 12-36 (175)
498 PRK14247 phosphate ABC transpo 95.8 0.0074 1.6E-07 51.7 3.2 27 61-87 27-53 (250)
499 PRK10771 thiQ thiamine transpo 95.8 0.0073 1.6E-07 51.2 3.1 27 61-87 23-49 (232)
500 PRK11124 artP arginine transpo 95.8 0.0075 1.6E-07 51.4 3.2 27 61-87 26-52 (242)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=1.9e-41 Score=290.20 Aligned_cols=171 Identities=23% Similarity=0.382 Sum_probs=159.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
..++|+|+|||||||||+|++||++||++|||+|+++|+++..++++|..+++++.+|+++||+++..++.++|....+
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~- 108 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC- 108 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC------------
Q 026464 142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF------------ 204 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~------------ 204 (238)
..||||||||||..||+.|+.. ..+|.||+|++|++++.+|+.+|+.|+.||+.||+.+.+|
T Consensus 109 -~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~ 187 (244)
T PLN02674 109 -QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 187 (244)
T ss_pred -CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCc
Confidence 5899999999999999999765 3689999999999999999999999999999999887654
Q ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 205 ---SAADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 205 ---~~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
+.||+++.+++||+.|++++.|+++||+++
T Consensus 188 L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~ 220 (244)
T PLN02674 188 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKK 220 (244)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 478899999999999999999999999874
No 2
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=3.5e-41 Score=290.09 Aligned_cols=173 Identities=46% Similarity=0.722 Sum_probs=159.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++++|+|+|||||||||+|+.|+++||++|||+|+++|+++..++++|..+++++.+|.++||+++..++..+|.+....
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999864322
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCC--------------CC----
Q 026464 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG--------------AR---- 203 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~--------------~~---- 203 (238)
...||||||||||..||+.|+....++.||+|++|++++.+|+.+|+.|+.||+.||+.. ++
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~ 187 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP 187 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence 468999999999999999999888899999999999999999999999999999999742 11
Q ss_pred --------CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 204 --------FSAADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 204 --------~~~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
.+.||+++.+++||+.|++++.|+++||+++
T Consensus 188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~ 226 (261)
T PLN02459 188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKR 226 (261)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 2578999999999999999999999999875
No 3
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=1.2e-38 Score=271.42 Aligned_cols=173 Identities=26% Similarity=0.435 Sum_probs=158.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
.+++|+|+|||||||||+|+.||++||++|||+|+++|+++..++++|..+++++.+|.++||+++.+++..++.+....
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 45789999999999999999999999999999999999999988999999999999999999999999999999862112
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCC-------CC-----------
Q 026464 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG-------AR----------- 203 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~-------~~----------- 203 (238)
...|||||||||+..|++.|++...+++||+|++|++++++|+.+|++|+.||+.||+.. .+
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~ 164 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGC 164 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccccc
Confidence 368999999999999999998888899999999999999999999999999999999752 11
Q ss_pred -------CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 204 -------FSAADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 204 -------~~~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
.+.||+++++++||+.|++++.|+++||+++
T Consensus 165 ~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~ 202 (229)
T PTZ00088 165 KGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNE 202 (229)
T ss_pred CCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 2578999999999999999999999999864
No 4
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=3.1e-38 Score=267.39 Aligned_cols=167 Identities=22% Similarity=0.379 Sum_probs=149.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|||||||||+|+.|+++|+++|+|+++++|+++..++++|+.+++++.+|.++||+++.+++.++|.+.. .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999998752 7
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCcccc-ccCCCCC-------------
Q 026464 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL-RLGGARF------------- 204 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~-~~~~~~~------------- 204 (238)
.||||||||||..||+.|+.. ..+|.||+|++|++++.+|+.+|+.|+.||+.| ++.+.+|
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~ 157 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE 157 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence 899999999999999998754 369999999999999999999999999988654 4544322
Q ss_pred ---CCCCc-HHHHHHHHHHHHHH---HHHHHHHHhh
Q 026464 205 ---SAADA-ASAWKEKFRIYAEQ---VRDATLFYLL 233 (238)
Q Consensus 205 ---~~dd~-~e~v~~Rl~~y~~~---~~~l~~~y~~ 233 (238)
+.||+ +|++++||+.|+++ +.++++||++
T Consensus 158 l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~ 193 (223)
T PRK14529 158 LSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKD 193 (223)
T ss_pred cccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhh
Confidence 46775 78999999999998 4589999985
No 5
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=5.6e-38 Score=264.47 Aligned_cols=168 Identities=28% Similarity=0.407 Sum_probs=155.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~ 144 (238)
+|+|+|+|||||||+|+.|++.++++|+|+|+++|+++...++.|..+++++.+|.++|++++.+++.++|+... ...
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~--~~~ 79 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK--NND 79 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc--ccC
Confidence 688999999999999999999999999999999999999999999999999999999999999999999998764 368
Q ss_pred eEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC---------------CCCCc
Q 026464 145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAADA 209 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~dd~ 209 (238)
|||||||||+..||+.|++......+|+|++|++++.+|+.+|+.|+.||..||+.+.+| +.||+
T Consensus 80 g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 80 NFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred cEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 999999999999999998875556788999999999999999999999999999876553 46889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 210 ASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 210 ~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
+|.+++||+.|++++.|+++||++.
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~~~ 184 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYSKC 184 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 9999999999999999999999874
No 6
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.7e-38 Score=252.75 Aligned_cols=161 Identities=23% Similarity=0.401 Sum_probs=148.9
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCC-CChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcc
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~ 138 (238)
+..+.+|+|+|+|||||.|+|.+++++||+.|+|+|||||++... ++..|.+|++++++|.++|.+++..+|++.|.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999999987 9999999999999999999999999999999875
Q ss_pred cccCCceEEEcCCcCCHHHHHHHHhhc--CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHH
Q 026464 139 YYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~R 216 (238)
...++|+||||||+..|+..|++.. .+++|++++|++|++++|++.|+..+ .+.||+.+.+++|
T Consensus 85 --~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~------------~R~DDn~esikkR 150 (195)
T KOG3079|consen 85 --GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN------------SRSDDNEESIKKR 150 (195)
T ss_pred --CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC------------CCCCCchHHHHHH
Confidence 3446699999999999999998764 68999999999999999999998643 1679999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 026464 217 FRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 217 l~~y~~~~~~l~~~y~~~ 234 (238)
+..|.+++.|+++||+++
T Consensus 151 ~et~~~~t~Pvi~~~e~k 168 (195)
T KOG3079|consen 151 LETYNKSTLPVIEYYEKK 168 (195)
T ss_pred HHHHHHcchHHHHHHHcc
Confidence 999999999999999873
No 7
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.1e-37 Score=262.26 Aligned_cols=169 Identities=31% Similarity=0.492 Sum_probs=156.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~ 144 (238)
+|+|+|||||||||+|+.|+++||++|||++|++|+++...+++|..+++++.+|..+|++++.+++..+|.+..+ ...
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999987432 267
Q ss_pred eEEEcCCcCCHHHHHHHHhhc--CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC---------------CCC
Q 026464 145 GFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA 207 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~d 207 (238)
||||||||++..|++.|.+.. .++.+|+|++|++++.+|+.+|+.|+.||..||+.+.+| +.|
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~d 159 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRED 159 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCC
Confidence 999999999999999998775 589999999999999999999999999999999886543 467
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 208 DAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 208 d~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
|+++.+++|++.|++++.|+++||++.
T Consensus 160 D~~e~i~~Rl~~y~~~~~~v~~~y~~~ 186 (210)
T TIGR01351 160 DTEEVVKKRLEVYKEQTEPLIDYYKKR 186 (210)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 889999999999999999999999874
No 8
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1e-35 Score=251.15 Aligned_cols=169 Identities=27% Similarity=0.467 Sum_probs=155.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|+|||||||+|+.||++||++|+|++|++++++..+++.|..+++++.+|..+|++++..++.+++....+ .
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~--~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC--K 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc--c
Confidence 36999999999999999999999999999999999999998999999999999999999999999999999987643 4
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC--------------
Q 026464 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-------------- 204 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~-------------- 204 (238)
+||||||||++..|++.|++. ..++.+|+|+||++++.+|+.+|..|+.||..||+...++
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~ 158 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI 158 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence 599999999999999999654 3678999999999999999999999999999999876554
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 205 -SAADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 205 -~~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
+.||+++.+++||..|++++.++++||++.
T Consensus 159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~ 189 (215)
T PRK00279 159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKK 189 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 367889999999999999999999999874
No 9
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=100.00 E-value=1.3e-35 Score=237.30 Aligned_cols=144 Identities=36% Similarity=0.569 Sum_probs=130.7
Q ss_pred EEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCceEE
Q 026464 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI 147 (238)
Q Consensus 68 l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~g~I 147 (238)
|+|||||||||+|+.||++||++|||+++++|+++...+++|+++++++.+|..+|++++.+++..+|.+. ....|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999976 3479999
Q ss_pred EcCCcCCHHHHHHHHh-----hcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 026464 148 LDGIPRTRIQAEILDQ-----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (238)
Q Consensus 148 lDGfPrt~~qa~~l~~-----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y~~ 222 (238)
|||||+|..|++.|++ ...|+.||+|+||++++.+|+.+ |+++.+++|++.|++
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~---------------------d~~~~i~~Rl~~y~~ 137 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ---------------------DNEEVIKKRLEEYRE 137 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT---------------------GSHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc---------------------CCHHHHHHHHHHHHH
Confidence 9999999999999987 46789999999999999999987 457899999999999
Q ss_pred HHHHHHHHHhhh
Q 026464 223 QVRDATLFYLLF 234 (238)
Q Consensus 223 ~~~~l~~~y~~~ 234 (238)
++.|+++||+++
T Consensus 138 ~~~~i~~~y~~~ 149 (151)
T PF00406_consen 138 NTEPILDYYKEQ 149 (151)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 10
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.1e-35 Score=246.51 Aligned_cols=172 Identities=38% Similarity=0.538 Sum_probs=160.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++.+++++|+||+||+|+|.+|++.|++.|+++||++|+++...|++|.++++++++|+++||++++.++..+++.. .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~--~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP--R 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc--c
Confidence 68999999999999999999999999999999999999999999999999999999999999999999888888876 3
Q ss_pred CCceEEEcCCcCCHHHHHHHHh-hcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC---------------
Q 026464 142 GESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS--------------- 205 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~--------------- 205 (238)
...|||+||||||..|++.+.. ...+|.||.|++|++.+.+|+.+|++++.+|+.||+.+.+|.
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr 171 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR 171 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcC
Confidence 4799999999999999988754 568999999999999999999999999999999998876653
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026464 206 AADAASAWKEKFRIYAEQVRDATLFYLLFI 235 (238)
Q Consensus 206 ~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~~ 235 (238)
.||.++++++|+..|++++.|+++||++..
T Consensus 172 ~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~ 201 (235)
T KOG3078|consen 172 EDDKPEVVKKRLKAYKEQTKPVLEYYKKKG 201 (235)
T ss_pred ccccHHHHHHHHHHHhhcchHHHHHHHhcC
Confidence 578899999999999999999999998764
No 11
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=9.2e-34 Score=234.54 Aligned_cols=157 Identities=29% Similarity=0.503 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|||||||||+|+.|+++||++|+++++++++++..++++|..++.++.+|.++|++++..++.+++.+..+ .
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~--~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC--K 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999987643 5
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHH
Q 026464 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~ 218 (238)
.||||||||++..|++.|++. ..+|.||+|+||++++.+|+.+|..+. | +.||++|.+++|+.
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~--g----------r~dd~~e~i~~Rl~ 147 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIE--G----------RADDNEATIKNRLD 147 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcccc--C----------CCCCCHHHHHHHHH
Confidence 799999999999999998765 369999999999999999999997532 1 45889999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 026464 219 IYAEQVRDATLFYLLF 234 (238)
Q Consensus 219 ~y~~~~~~l~~~y~~~ 234 (238)
.|++++.|+++||++.
T Consensus 148 ~y~~~~~pv~~~y~~~ 163 (186)
T PRK14528 148 NYNKKTLPLLDFYAAQ 163 (186)
T ss_pred HHHHHhHHHHHHHHhC
Confidence 9999999999999874
No 12
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=5.1e-34 Score=253.41 Aligned_cols=162 Identities=27% Similarity=0.450 Sum_probs=145.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|||||||||+|+.|++.||++|||+||+||+++..+++.|..+.+++.+|.++||+++..++.++|...++ .
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~--~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA--A 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc--c
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999987654 5
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCC-CccccccCCCCCCCCCcHHHHHHHH
Q 026464 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSP-HKEFLRLGGARFSAADAASAWKEKF 217 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~-~~~~~~~~~~~~~~dd~~e~v~~Rl 217 (238)
.||||||||++..|++.|++. ..||+||+|++|++++++|+.+|..+.. ++. ..+.||+++.+.+|+
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~-------~~R~DD~~E~i~kRL 151 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGE-------EVRADDTPEVLAKRL 151 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCC-------ccCCCCCHHHHHHHH
Confidence 899999999999999998765 3699999999999999999999875321 221 125688999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026464 218 RIYAEQVRDATLFYLLF 234 (238)
Q Consensus 218 ~~y~~~~~~l~~~y~~~ 234 (238)
..|++++.||++||.+.
T Consensus 152 ~~Y~~~t~PLl~~Y~e~ 168 (333)
T PRK13808 152 ASYRAQTEPLVHYYSEK 168 (333)
T ss_pred HHHHHHhHHHHHHhhcc
Confidence 99999999999999873
No 13
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=1.2e-33 Score=233.09 Aligned_cols=153 Identities=27% Similarity=0.455 Sum_probs=140.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
..+|+|+|+|||||||+|+.||++||++|||+||++|+++..++++|..+++++.+|.++|++++..++.+++... .
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~ 78 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---N 78 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---c
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999998763 3
Q ss_pred CceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHH
Q 026464 143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl 217 (238)
+.||||||||++..|++.|++. ..++.||+|+||++++.+|+.+|. +.||+++.+++|+
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~----------------r~dD~~e~i~~Rl 142 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG----------------RADDNEAVIRNRL 142 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC----------------CCCCCHHHHHHHH
Confidence 5789999999999999998764 257899999999999999999986 3578899999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026464 218 RIYAEQVRDATLFYLLF 234 (238)
Q Consensus 218 ~~y~~~~~~l~~~y~~~ 234 (238)
+.|++++.|+++||++.
T Consensus 143 ~~y~~~~~pv~~~y~~~ 159 (183)
T PRK14531 143 EVYREKTAPLIDHYRQR 159 (183)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 14
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=1.9e-33 Score=237.36 Aligned_cols=166 Identities=24% Similarity=0.397 Sum_probs=148.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhc-----CCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-----SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~-----~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~ 137 (238)
..+|+|+|+|||||||+|+.||++||++||++|++++++. ...+..+. +.+++..|..+|++++..++...+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999999999999999999999987 33455554 77889999999999999999888764
Q ss_pred ccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC-------------
Q 026464 138 GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF------------- 204 (238)
Q Consensus 138 ~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~------------- 204 (238)
..||||||||++..|++.|++...+++||+|++|++++.+|+.+|..|+.||..||..+.+|
T Consensus 82 -----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl 156 (215)
T PRK14530 82 -----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGEL 156 (215)
T ss_pred -----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcc
Confidence 36899999999999999998877899999999999999999999999999999998776543
Q ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 205 --SAADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 205 --~~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
+.||+++.+++||..|++++.|+++||++.
T Consensus 157 ~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~ 188 (215)
T PRK14530 157 IQRDDDTEETVRERLDVFEENTEPVIEHYRDQ 188 (215)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357789999999999999999999999874
No 15
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=1.4e-32 Score=227.13 Aligned_cols=168 Identities=33% Similarity=0.535 Sum_probs=152.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~ 144 (238)
+|+|+|+|||||||+|+.||++||++|+++++++++.+...++++..+.+++.+|..+|++++..++..+|.... ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence 489999999999999999999999999999999999998888999999999999999999999999999998653 368
Q ss_pred eEEEcCCcCCHHHHHHHHhhc----CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCC-------CCCCCcHHHH
Q 026464 145 GFILDGIPRTRIQAEILDQIV----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGAR-------FSAADAASAW 213 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~~----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~-------~~~dd~~e~v 213 (238)
+|||||||++..|++.|.+.. .++++|+|++|++++.+|+.+|..++.||..||+...+ .+.+|+++.+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i 158 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETI 158 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHH
Confidence 999999999999999997764 78999999999999999999999999999999972211 1467889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 026464 214 KEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 214 ~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
++|+..|++++.++++||++.
T Consensus 159 ~~R~~~y~~~~~~i~~~~~~~ 179 (194)
T cd01428 159 KKRLEVYKEQTAPLIDYYKKK 179 (194)
T ss_pred HHHHHHHHHhHHHHHHHHHhC
Confidence 999999999999999999864
No 16
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=3.4e-32 Score=224.71 Aligned_cols=156 Identities=26% Similarity=0.439 Sum_probs=141.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~ 144 (238)
+|+|+|+|||||||+|+.||+++|++|||+|+++|+++..+++.+..+++++..|+++|++++.+++..++.... .+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~ 79 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AAG 79 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--ccC
Confidence 689999999999999999999999999999999999998889999999999999999999999999999997653 368
Q ss_pred eEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHH
Q 026464 145 GFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~ 219 (238)
||||||||++..|++.+... ..||.+|+|++|++++.+|+.+|..+. .+.+++++.+.+|++.
T Consensus 80 g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~Rl~~ 147 (188)
T PRK14532 80 GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ------------GRPDDNPEVFVTRLDA 147 (188)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC------------CCCCCCHHHHHHHHHH
Confidence 99999999999999998644 368999999999999999999986421 1457888999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 026464 220 YAEQVRDATLFYLLF 234 (238)
Q Consensus 220 y~~~~~~l~~~y~~~ 234 (238)
|.+++.++++||++.
T Consensus 148 ~~~~~~~i~~~y~~~ 162 (188)
T PRK14532 148 YNAQTAPLLPYYAGQ 162 (188)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
No 17
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.6e-32 Score=254.48 Aligned_cols=169 Identities=23% Similarity=0.386 Sum_probs=154.9
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCceE
Q 026464 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGF 146 (238)
Q Consensus 67 ~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~g~ 146 (238)
.|+|+|||||||+|++|+++|+++||++++++++++..++++|+.+++++.+|.++|++++..++.+++....+ ...||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999986543 35789
Q ss_pred EEcCCcCCHHHHHHHHhhc-CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC-----------CCCCcHHHHH
Q 026464 147 ILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-----------SAADAASAWK 214 (238)
Q Consensus 147 IlDGfPrt~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~-----------~~dd~~e~v~ 214 (238)
||||||++..|++.|+... .||+||+|++|++++++|+.+|..|+.||..||+.+.++ +.||+++.++
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 9999999999999997664 699999999999999999999999999999999876553 3588999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 026464 215 EKFRIYAEQVRDATLFYLLFIY 236 (238)
Q Consensus 215 ~Rl~~y~~~~~~l~~~y~~~~~ 236 (238)
+||+.|++++.|++++|...++
T Consensus 160 kRL~~Y~~~t~pIl~~Y~~rl~ 181 (505)
T PLN02842 160 ARLQIYKKNAEAILSTYSDIMV 181 (505)
T ss_pred HHHHHHHHHhhhHHHhcCcEEE
Confidence 9999999999999999987543
No 18
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-31 Score=220.48 Aligned_cols=152 Identities=32% Similarity=0.625 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|+|||||||+|+.|+++++++|+|+++++|......+++|..++.++.+|.++||+++..++..++...+|.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~-- 78 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK-- 78 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc--
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHH
Q 026464 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~ 218 (238)
.+||+|||||+..|++.|++. ..+|.++.++++++.+.+|+..|.. +.||+++.+++|+.
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---------------r~dd~~~~~~~R~~ 143 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV---------------REDDNEETVKKRLK 143 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc---------------cccCCHHHHHHHHH
Confidence 399999999999999999865 4789999999999999999999974 46899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 026464 219 IYAEQVRDATLFYL 232 (238)
Q Consensus 219 ~y~~~~~~l~~~y~ 232 (238)
.|++.+.|+++||+
T Consensus 144 ~y~~~~~pli~~y~ 157 (178)
T COG0563 144 VYHEQTAPLIEYYS 157 (178)
T ss_pred HHHhcccchhhhhe
Confidence 99999999999998
No 19
>PLN02200 adenylate kinase family protein
Probab=99.98 E-value=4.2e-31 Score=226.02 Aligned_cols=157 Identities=25% Similarity=0.455 Sum_probs=142.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
..+.+|+|+|+|||||||+|+.|+++||++||+++|++|+++...++.|..+.+++.+|..+|++++..++..++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~-- 118 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS-- 118 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--
Confidence 346889999999999999999999999999999999999999888999999999999999999999999999998764
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh--cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHH
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~ 218 (238)
...+|||||||++..|+..|++. ..||.+|+|+++++++.+|+.+|+.. +.||+++.+++|++
T Consensus 119 -~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~--------------r~dd~~e~~~~Rl~ 183 (234)
T PLN02200 119 -DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQG--------------RVDDNIDTIKKRLK 183 (234)
T ss_pred -CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCC--------------CCCCCHHHHHHHHH
Confidence 25789999999999999999765 36899999999999999999998631 35778999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 026464 219 IYAEQVRDATLFYLLF 234 (238)
Q Consensus 219 ~y~~~~~~l~~~y~~~ 234 (238)
.|++.+.|+++||++.
T Consensus 184 ~y~~~~~pv~~~y~~~ 199 (234)
T PLN02200 184 VFNALNLPVIDYYSKK 199 (234)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999863
No 20
>PRK14527 adenylate kinase; Provisional
Probab=99.98 E-value=6.3e-31 Score=218.04 Aligned_cols=158 Identities=25% Similarity=0.418 Sum_probs=142.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|+|||||||||+|+.|+++||++|+++|++++++...+++++..+..++.+|..+|++++..++.+++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~-- 82 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME-- 82 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--
Confidence 678899999999999999999999999999999999999988889999999999999999999999999999998753
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~R 216 (238)
..+|||||||++..|++.|+.. ..++.||+|++|++++.+|+.+|.... -+.||+++.+++|
T Consensus 83 -~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~R 149 (191)
T PRK14527 83 -PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQE------------GRSDDNEETVRRR 149 (191)
T ss_pred -CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC------------CCCCCCHHHHHHH
Confidence 3579999999999999988754 357889999999999999999997532 1467889999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 026464 217 FRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 217 l~~y~~~~~~l~~~y~~~ 234 (238)
++.|++++.|+++||++.
T Consensus 150 ~~~y~~~~~~v~~~y~~~ 167 (191)
T PRK14527 150 QQVYREQTQPLVDYYEAR 167 (191)
T ss_pred HHHHHHHhHHHHHHHHhc
Confidence 999999999999999864
No 21
>PRK02496 adk adenylate kinase; Provisional
Probab=99.98 E-value=5.6e-31 Score=216.84 Aligned_cols=154 Identities=29% Similarity=0.503 Sum_probs=140.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
+++|+|+|+|||||||+|+.|+++||++|+++|+++++++..++++|..++.++.+|..+|++++..++..++....+
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-- 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-- 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--
Confidence 367999999999999999999999999999999999999988999999999999999999999999999999987543
Q ss_pred CceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHH
Q 026464 143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl 217 (238)
..||||||||++..|++.++.. ..++++|+|++|++++.+|+..|. +.||.++.+++|+
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~----------------~~dd~~~~~~~r~ 142 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG----------------RKDDTEEVIRRRL 142 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC----------------CCCCCHHHHHHHH
Confidence 5799999999999999988754 268999999999999999999985 2467889999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026464 218 RIYAEQVRDATLFYLLF 234 (238)
Q Consensus 218 ~~y~~~~~~l~~~y~~~ 234 (238)
+.|++++.|+++||++.
T Consensus 143 ~~y~~~~~~v~~~~~~~ 159 (184)
T PRK02496 143 EVYREQTAPLIDYYRDR 159 (184)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999763
No 22
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.97 E-value=1.3e-30 Score=214.02 Aligned_cols=155 Identities=27% Similarity=0.458 Sum_probs=139.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~ 144 (238)
.|+|+|+|||||||+|+.|++++|++|||++|++|+++..+++.|+.+++++.+|..+|++++..++.+++... ...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence 37899999999999999999999999999999999999888899999999999999999999999999988764 267
Q ss_pred eEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHHH
Q 026464 145 GFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y 220 (238)
+|||||||++..|++.+.+. ..||++|+|++|++++.+|+.+|.... + +.+++.+.+++|+..|
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~--~----------r~dd~~e~~~~r~~~y 145 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSS--G----------RVDDNIESIKKRFRTY 145 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccC--C----------CCCCCHHHHHHHHHHH
Confidence 99999999999999988654 368999999999999999999987421 1 3467899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 026464 221 AEQVRDATLFYLLF 234 (238)
Q Consensus 221 ~~~~~~l~~~y~~~ 234 (238)
.++..++++||++.
T Consensus 146 ~~~~~~i~~~~~~~ 159 (183)
T TIGR01359 146 NEQTLPVIEHYENK 159 (183)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999763
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=3.4e-27 Score=193.78 Aligned_cols=158 Identities=27% Similarity=0.417 Sum_probs=139.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
...|+|+|+|||||||+|+.|++++|+.++++|+++++++...++.++.++.++.+|..+|++.+...+...+.... ..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-GT 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-Cc
Confidence 45789999999999999999999999999999999999887778889999999999999999999998888886543 24
Q ss_pred CceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHHHH
Q 026464 143 ESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYA 221 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y~ 221 (238)
+.+||+||||++..|++.+... ..|+.+|+|++|++++.+|+.+|.... .+.+++++.+.+|++.|.
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~------------~r~d~~~~~~~~r~~~~~ 149 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETS------------GRVDDNEKTIKKRLETYY 149 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccC------------CCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999654 568999999999999999999886311 146778999999999999
Q ss_pred HHHHHHHHHHhh
Q 026464 222 EQVRDATLFYLL 233 (238)
Q Consensus 222 ~~~~~l~~~y~~ 233 (238)
++..+++++|++
T Consensus 150 ~~~~~~~~~y~~ 161 (188)
T TIGR01360 150 KATEPVIAYYET 161 (188)
T ss_pred HhhHHHHHHHHh
Confidence 999999999975
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=129.54 Aligned_cols=119 Identities=17% Similarity=0.294 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCC-C-----ChHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-R-----SALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~-----s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~ 136 (238)
+++|+|+|+|||||||+++ +++++|++++++||++|+++.. + ..+|..+.+... .+ .++.+..++...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~~-~~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--EL-GMDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--HH-ChHHHHHHHHHHHH
Confidence 4579999999999999987 7899999999999999987632 2 235555555433 22 23444455555665
Q ss_pred cccccCCceEEEcCCcCCHHHHHHHHhhcC-CCEEEEEecCHHHHHHHHhcCCC
Q 026464 137 EGYYRGESGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 137 ~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
. .++..+|+||+ ++..|.+.+.+... ...+|+++||+++..+|+..|..
T Consensus 77 ~---~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 77 E---KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred h---cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 4 23578999999 79999988876543 67899999999999999998863
No 25
>PRK08356 hypothetical protein; Provisional
Probab=99.69 E-value=1.6e-16 Score=132.13 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC----CCC---hHHHH----HHHHHHcCCCCCh----HH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRS---ALYKQ----IANAVNEGKLVPE----DV 126 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~s---~~g~~----i~~~l~~g~~vpd----~~ 126 (238)
..+.|+|+|||||||||+|+.|+ ++|+++|++++.++.... ..+ ..+.. ...+++.|..+|+ ++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 34679999999999999999996 599999999996654322 211 22222 2466777877775 66
Q ss_pred HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 127 i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+.+++.+.+.. ...|++||+ |+..|++.|.... ..+|++++|.+++.+|+.+|..
T Consensus 83 ~~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~~--~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 83 LIRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRMG--GKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred HHHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHhcCC
Confidence 77777666642 235999999 9999999997642 4799999999999999998874
No 26
>PRK08118 topology modulation protein; Reviewed
Probab=99.62 E-value=2.6e-15 Score=122.24 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
.+|+|+|+|||||||+|+.|++.++++++++|++++.. ....++++....++...+. .
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~------~ 59 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK------E 59 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc------C
Confidence 57999999999999999999999999999999988641 1123455555556655443 2
Q ss_pred ceEEEcCC-cCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 144 SGFILDGI-PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 144 ~g~IlDGf-Prt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+||+||. +.+.. ..+ ..+|.+|+|++|.+++..|+..|..
T Consensus 60 ~~wVidG~~~~~~~--~~l---~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 60 DEWIIDGNYGGTMD--IRL---NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CCEEEeCCcchHHH--HHH---HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 57999995 44443 222 2589999999999999999998864
No 27
>PRK13974 thymidylate kinase; Provisional
Probab=99.60 E-value=1.9e-14 Score=121.39 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcCCCChHHHHHHHHHH--cCCCCChHHHHHHH--HHH--
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSALYKQIANAVN--EGKLVPEDVIFALL--SKR-- 134 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~s~~g~~i~~~l~--~g~~vpd~~i~~ll--~~~-- 134 (238)
+..|+|.|++||||||+++.|++.+....... .+.+....+.++++|+.+++++. .|...++.....++ .++
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999985322110 11222223456889999999996 34456665544443 222
Q ss_pred -----HHcccccCCceEEE-----------cCCcCCHHH--HHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCCC
Q 026464 135 -----LEEGYYRGESGFIL-----------DGIPRTRIQ--AEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSP 192 (238)
Q Consensus 135 -----l~~~~~~~~~g~Il-----------DGfPrt~~q--a~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (238)
+... .....+|| +|+|+...+ ...+... ..||++|+|+||++++.+|+.+|.
T Consensus 83 ~~~~~i~~~--l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~---- 156 (212)
T PRK13974 83 HVSKIIRPA--LENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK---- 156 (212)
T ss_pred HHHHHHHHH--HHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence 2211 11233666 788986543 5555432 369999999999999999998763
Q ss_pred CccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 193 ~~~~~~~~~~~~~~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
+| .+++|...|.+.+.++.++|.+.
T Consensus 157 --------------dD---~~e~~~~~y~~~v~~~y~~y~~~ 181 (212)
T PRK13974 157 --------------PD---RIEAEGIEFLERVAEGFALIAEE 181 (212)
T ss_pred --------------cC---chhhhhHHHHHHHHHHHHHHHhc
Confidence 22 36678889999999999999764
No 28
>PRK06217 hypothetical protein; Validated
Probab=99.59 E-value=9.6e-15 Score=120.25 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
+++|+|+|+|||||||+|+.|++.+|++|+++|+++++.. +.+.+ ...|++....++...+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~----- 63 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPFT----------TKRPPEERLRLLLEDLRP----- 63 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCcc----------ccCCHHHHHHHHHHHHhc-----
Confidence 3679999999999999999999999999999999887532 11111 123455555555555543
Q ss_pred CceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCC
Q 026464 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (238)
+.+|||||+|.... +.+. ..+|.+|+|++|.+++.+|+..|...
T Consensus 64 ~~~~vi~G~~~~~~--~~~~--~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 64 REGWVLSGSALGWG--DPLE--PLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred CCCEEEEccHHHHH--HHHH--hhCCEEEEEECCHHHHHHHHHcCccc
Confidence 36799999986532 2222 35789999999999999999999753
No 29
>PRK03839 putative kinase; Provisional
Probab=99.57 E-value=2.1e-14 Score=117.70 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~ 144 (238)
+|+|+|+|||||||+|+.||+++|++|+++++++++.. +++.... .+ +.....+...+.+. ..+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~---~~-----~~~~~~l~~~~~~~--~~~~ 66 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD---EM-----EIDFDKLAYFIEEE--FKEK 66 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh---hh-----hcCHHHHHHHHHHh--ccCC
Confidence 69999999999999999999999999999999987631 1110000 01 12233343444332 1245
Q ss_pred eEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+||+||+... ...++.+|+|+++.+++.+|+..|..
T Consensus 67 ~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~ 102 (180)
T PRK03839 67 NVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGY 102 (180)
T ss_pred CEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCC
Confidence 6999998542 23679999999999999999998863
No 30
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.56 E-value=6.7e-15 Score=129.68 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=97.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
+..|++.|+|||||||+|+.|++++ +..+++.|++ ++.+......+.. .+..++...-.+.....+...+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~---- 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS---- 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence 4678999999999999999999999 9999999775 4433221111100 000000000011222333333332
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhc---CC-CEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHH---
Q 026464 142 GESGFILDGIPRTRIQAEILDQIV---DV-DLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK--- 214 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~---~~-d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~--- 214 (238)
+.++|+|+++.+..+.+.+.... .. -.+|+|++|.+++.+|+.+|..+. ...+.++
T Consensus 75 -g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~----------------~~~~~i~~~~ 137 (300)
T PHA02530 75 -GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA----------------VPEDVLRSMF 137 (300)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC----------------CCHHHHHHHH
Confidence 46799999999998888775442 22 337999999999999999995322 2344555
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026464 215 EKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 215 ~Rl~~y~~~~~~l~~~y~~ 233 (238)
+|++.|.+.+.|++..|..
T Consensus 138 ~~~~~~~~~~~p~~~~~~~ 156 (300)
T PHA02530 138 KQMKEYRGLVWPVYTADPG 156 (300)
T ss_pred HHHHHhcCCCCceeccCCC
Confidence 9999999999999877754
No 31
>PRK00625 shikimate kinase; Provisional
Probab=99.52 E-value=1.3e-13 Score=112.84 Aligned_cols=138 Identities=15% Similarity=0.119 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
+.|+|+|+|||||||+++.||+++|++++++|+++++..... +...+.++.+ .|+..-.+....++. .+. .
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~-~l~-----~ 72 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALT-SLP-----V 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHH-Hhc-----c
Confidence 369999999999999999999999999999999998754320 0011222222 232111112222222 222 1
Q ss_pred CceEEEcC--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHHH
Q 026464 143 ESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (238)
Q Consensus 143 ~~g~IlDG--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y 220 (238)
...+|-.| .+...+..+.| ..-..||+|++|.+++.+|+.+|...+. ....+...+.+++|...|
T Consensus 73 ~~~VIs~GGg~~~~~e~~~~l---~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~----------~~~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 73 IPSIVALGGGTLMIEPSYAHI---RNRGLLVLLSLPIATIYQRLQKRGLPER----------LKHAPSLEEILSQRIDRM 139 (173)
T ss_pred CCeEEECCCCccCCHHHHHHH---hcCCEEEEEECCHHHHHHHHhcCCCCcc----------cCcHHHHHHHHHHHHHHH
Confidence 23344444 33333333333 2335799999999999999998864220 001123466778888888
Q ss_pred HH
Q 026464 221 AE 222 (238)
Q Consensus 221 ~~ 222 (238)
.+
T Consensus 140 ~~ 141 (173)
T PRK00625 140 RS 141 (173)
T ss_pred HH
Confidence 76
No 32
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.52 E-value=2.5e-13 Score=110.28 Aligned_cols=138 Identities=20% Similarity=0.240 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHc-CCCCChHHHHHHHHHHHHccccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~-g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
...|+|+|+|||||||+++.||+.++++++++|.++.+... ..|.++++. |+.---+.-.+++...+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--- 72 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEED--- 72 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence 45699999999999999999999999999999999987543 445555543 43322233334444433332
Q ss_pred CCceEEEc--CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCC---cHHHHHHH
Q 026464 142 GESGFILD--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD---AASAWKEK 216 (238)
Q Consensus 142 ~~~g~IlD--GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd---~~e~v~~R 216 (238)
..+|=- |...+.+....|...+ .||+|++|.+++.+|+......|.-. ..+. -.+.+++|
T Consensus 73 --~~ViaTGGG~v~~~enr~~l~~~g---~vv~L~~~~e~l~~Rl~~~~~RPll~----------~~~~~~~l~~L~~~R 137 (172)
T COG0703 73 --NAVIATGGGAVLSEENRNLLKKRG---IVVYLDAPFETLYERLQRDRKRPLLQ----------TEDPREELEELLEER 137 (172)
T ss_pred --CeEEECCCccccCHHHHHHHHhCC---eEEEEeCCHHHHHHHhccccCCCccc----------CCChHHHHHHHHHHH
Confidence 122222 2344445555555443 79999999999999998443222100 1111 25788899
Q ss_pred HHHHHHHH
Q 026464 217 FRIYAEQV 224 (238)
Q Consensus 217 l~~y~~~~ 224 (238)
...|++..
T Consensus 138 ~~~Y~e~a 145 (172)
T COG0703 138 QPLYREVA 145 (172)
T ss_pred HHHHHHhC
Confidence 99998853
No 33
>PRK13973 thymidylate kinase; Provisional
Probab=99.52 E-value=1.6e-13 Score=115.83 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHHhhcCCCChHHHHHHHHHHcC--CCC------------ChH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG--KLV------------PED 125 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g--~~v------------pd~ 125 (238)
++.|+|.|++||||||+++.|++++ |+.++.+. .+.+++.|+.+++.+..+ ..+ ..+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~------~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~ 76 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR------EPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDD 76 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE------CCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999 88887661 111233444444444322 111 122
Q ss_pred HHHHHHHHHHHcccccCCceEEEcC----------CcCC--HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 126 VIFALLSKRLEEGYYRGESGFILDG----------IPRT--RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 126 ~i~~ll~~~l~~~~~~~~~g~IlDG----------fPrt--~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+..++...+..+ .-+|.|. +++. ..+...+... ..||++|+|++|++++.+|+.+|..
T Consensus 77 ~~~~~i~~~l~~g-----~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~ 151 (213)
T PRK13973 77 HVEEVIRPALARG-----KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG 151 (213)
T ss_pred HHHHHHHHHHHCC-----CEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence 3344455555543 3345554 4433 3356666543 3699999999999999999999864
Q ss_pred CCCCccccccCCCCCCCCCcHHHHHHHHHHHHHHH
Q 026464 190 FSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQV 224 (238)
Q Consensus 190 ~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y~~~~ 224 (238)
....++ -.++..+..+++.+.|.+..
T Consensus 152 ~~~~~~---------~e~~~~~~~~~~~~~y~~l~ 177 (213)
T PRK13973 152 SDTPDR---------FEKEDLAFHEKRREAFLQIA 177 (213)
T ss_pred CCccCc---------hhhchHHHHHHHHHHHHHHH
Confidence 210000 01234567777788887754
No 34
>PRK08233 hypothetical protein; Provisional
Probab=99.51 E-value=1.6e-13 Score=111.82 Aligned_cols=141 Identities=14% Similarity=0.188 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|.|+|||||||+|+.|++.++...+...|..+....+ ..+...+..|... +......+.+.+......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCP-----EDICKWIDKGANY-SEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCc-----hhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence 3578999999999999999999999975444444444432111 2233344445444 333334444444432111
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYA 221 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y~ 221 (238)
....+|+.++|......+ +. ..+|++|+|++|.+++++|+..|... +++.+.+.+++..|.
T Consensus 76 ~~~~~vivd~~~~~~~~~-~~--~~~d~~i~l~~~~~~~~~R~~~R~~~----------------~~~~~~~~~~~~~~~ 136 (182)
T PRK08233 76 SNVDYIIVDYPFAYLNSE-MR--QFIDVTIFIDTPLDIAMARRILRDFK----------------EDTGNEIHNDLKHYL 136 (182)
T ss_pred CCceEEEEeeehhhccHH-HH--HHcCEEEEEcCCHHHHHHHHHHHHhh----------------hccccchhhHHHHHH
Confidence 223566655676533322 11 23689999999999999998887531 112235667788887
Q ss_pred HHHHHH
Q 026464 222 EQVRDA 227 (238)
Q Consensus 222 ~~~~~l 227 (238)
+...+.
T Consensus 137 ~~~~~~ 142 (182)
T PRK08233 137 NYARPL 142 (182)
T ss_pred HHHHHH
Confidence 776664
No 35
>PRK13949 shikimate kinase; Provisional
Probab=99.51 E-value=9.2e-13 Score=107.40 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHH-HcCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l-~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
.+|+|+|+|||||||+++.||+.++++++++++++++.... .+.++. ..|.....+...+++.+ +..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~----- 69 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE----- 69 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence 47999999999999999999999999999999988765332 222222 23443334444455544 332
Q ss_pred CceEEE-c--CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 143 ESGFIL-D--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 143 ~~g~Il-D--GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
..++|+ + |+|....+.+.|.+. +++|+|++|.+++.+|+..+
T Consensus 70 ~~~~vis~Ggg~~~~~~~~~~l~~~---~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 70 FEDVVISTGGGAPCFFDNMELMNAS---GTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHhC---CeEEEEECCHHHHHHHHhcC
Confidence 235666 4 567777777777543 67999999999999999753
No 36
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.50 E-value=2.1e-13 Score=107.52 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
..++|+|+|-||+||||+|++||+.+|+++|.+++++++.-- .....+- -+-..+.++.+..-|...|.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~-y~c~i~DEdkv~D~Le~~m~~---- 75 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEE-YKCHILDEDKVLDELEPLMIE---- 75 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhccccc-ccCccccHHHHHHHHHHHHhc----
Confidence 456799999999999999999999999999999999987421 1110000 012356777888888887764
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.|.|+|-.-... |.+ -.+|+||+|.||.++|.+||..|+.
T Consensus 76 --Gg~IVDyHgCd~-----Fpe-rwfdlVvVLr~~~s~LY~RL~sRgY 115 (176)
T KOG3347|consen 76 --GGNIVDYHGCDF-----FPE-RWFDLVVVLRTPNSVLYDRLKSRGY 115 (176)
T ss_pred --CCcEEeecccCc-----cch-hheeEEEEEecCchHHHHHHHHcCC
Confidence 578888322110 000 2579999999999999999999985
No 37
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.45 E-value=1.7e-12 Score=108.25 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCC------CCh-------------
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL------VPE------------- 124 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~------vpd------------- 124 (238)
++|.|+|++||||||+|+.|++.+|+++++.|++.++.+..+++.+..+.+.+..+.+ +.-
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4699999999999999999999999999999999999888888888888877643222 211
Q ss_pred -----HHHHHHHHHHHHccc--ccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 -----DVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 -----~~i~~ll~~~l~~~~--~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+++..++...+.... .....-+|+| .|-..+. .+. ..+|.+|+++||.++.++|+..|+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcC
Confidence 111222222222110 1112234443 2222110 011 257999999999999999999985
No 38
>PRK04040 adenylate kinase; Provisional
Probab=99.43 E-value=2.7e-12 Score=106.45 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh--CCCeechhhhHHhhcCCCC--hHHHHHHHHHHcCCCCChHHHHHHHHHHHHcc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRS--ALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~s--~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~ 138 (238)
+++|+|+|+|||||||+++.|++++ ++.+++.|+++++...... .....+++ -......-+-.+....+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 8999999999876543211 11111111 00001111222333444432
Q ss_pred cccCCceEEEcCCcCCH--------HHHHHHHhhcCCCEEEEEecCHHHHHHHHhc---CCCCCCCccccccCCCCCCCC
Q 026464 139 YYRGESGFILDGIPRTR--------IQAEILDQIVDVDLVINFKSIEDQLVKRNLE---SEAFSPHKEFLRLGGARFSAA 207 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~--------~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~---R~~~~~~~~~~~~~~~~~~~d 207 (238)
.....+|+||..... -....+.. ..||.+|+|.++++++++|... |. +..
T Consensus 78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~~R~----------------R~~ 138 (188)
T PRK04040 78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDETRR----------------RDV 138 (188)
T ss_pred --hcCCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhcccccC----------------CCC
Confidence 223458999854211 12222333 4899999999999999888875 22 223
Q ss_pred CcHHHHHHHHHHHHHHH
Q 026464 208 DAASAWKEKFRIYAEQV 224 (238)
Q Consensus 208 d~~e~v~~Rl~~y~~~~ 224 (238)
++++.++.++.......
T Consensus 139 es~e~I~~~~~~a~~~a 155 (188)
T PRK04040 139 ETEEDIEEHQEMNRAAA 155 (188)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 56777887777655543
No 39
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.43 E-value=2.9e-12 Score=100.37 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCCh----HHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA----LYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~----~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
.|+++|+|||||||+++.|++.++..+|+.+++.........+ ... ..+. -.+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~l~~--- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIE-AEER-------AYQILNAAIRKALRN--- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHH-HHHH-------HHHHHHHHHHHHHHT---
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHH-HHHH-------HHHHHHHHHHHHHHc---
Confidence 4789999999999999999999999999998876644331111 000 0000 011233444455543
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+..+|+|+.-....+...+.+. +....+|+|+++++++.+|+.+|..
T Consensus 70 --g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 70 --GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp --T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred --CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 4568999766665555555433 3356899999999999999999875
No 40
>PRK07261 topology modulation protein; Provisional
Probab=99.42 E-value=7.4e-13 Score=108.11 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|+|||||||+|+.|++.+++++++.|++..... ....+.+.....+...+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC------
Confidence 369999999999999999999999999999987654211 0122344445555555543
Q ss_pred ceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..||+||.+....+...+. ..|.+|+|++|..++..|+..|..
T Consensus 59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3499999988755555554 458999999999999999988864
No 41
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=6.7e-12 Score=100.34 Aligned_cols=111 Identities=22% Similarity=0.264 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCC-CChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
++|.|.|+|||||||+|+.||++||++|+|.|+++|+-... +-++ ..+.++-++...+. ..+.++..+.. .
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl-~ef~~~AE~~p~iD-----~~iD~rq~e~a-~- 72 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSL-EEFSRYAEEDPEID-----KEIDRRQKELA-K- 72 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCH-HHHHHHHhcCchhh-----HHHHHHHHHHH-H-
Confidence 47899999999999999999999999999999999975432 2222 22333333322211 11222222111 1
Q ss_pred CceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++||+|- -|-++.. ...|+-|+|.+|.++..+|+..|.
T Consensus 73 ~~nvVlegr-----LA~Wi~k-~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 73 EGNVVLEGR-----LAGWIVR-EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred cCCeEEhhh-----hHHHHhc-cccceEEEEeCcHHHHHHHHHHhc
Confidence 467888864 1222222 457999999999999999999986
No 42
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.41 E-value=2.1e-12 Score=107.53 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=79.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCC-----CCh-------------
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE------------- 124 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~-----vpd------------- 124 (238)
+.+|.|+|++||||||+++.|++ +|++++++|++.++.+.++++..+.+.+.+..+.. +.-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46799999999999999999998 99999999999999888888777777766543222 221
Q ss_pred -----HHHHHHHHHHHHccc--ccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 -----DVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 -----~~i~~ll~~~l~~~~--~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+++...+.+.+.... .....-+|+| .|.-.+. .+. ..+|.+|++++|+++..+|+..|.
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e-~pll~e~--~~~--~~~D~vi~V~a~~e~~~~Rl~~R~ 146 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAESSPYVVLD-IPLLFEN--GLE--KLVDRVLVVDAPPETQLERLMARD 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEE-ehHhhcC--Cch--hhCCeEEEEECCHHHHHHHHHHcC
Confidence 122222223332110 0111234444 3322210 001 247999999999999999999985
No 43
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.41 E-value=3.7e-13 Score=108.64 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|.||+||||+|++|+ ++|+.++++.+++++.--- +...+ ..+...+..+.+...+...+. .
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~-~~~de-----~r~s~~vD~d~~~~~le~~~~------~ 67 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLY-TEYDE-----LRKSVIVDVDKLRKRLEELLR------E 67 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCe-eccCC-----ccceEEeeHHHHHHHHHHHhc------c
Confidence 479999999999999999999 9999999999998864210 00000 000112333333333333332 3
Q ss_pred ceEEEcCCcCCHHHHHHHHhhcC-CCEEEEEecCHHHHHHHHhcCCCCC
Q 026464 144 SGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFS 191 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (238)
.+.|+|+. +.+... +|+||+|.|+++.|.+||.+|+..+
T Consensus 68 ~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~ 107 (180)
T COG1936 68 GSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSE 107 (180)
T ss_pred CCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCH
Confidence 57889876 333334 8999999999999999999999643
No 44
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.39 E-value=2.7e-12 Score=105.37 Aligned_cols=119 Identities=22% Similarity=0.259 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCC-----CC----------------
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VP---------------- 123 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~-----vp---------------- 123 (238)
+|.|+|+|||||||+++.|++ +|+++|++|++.++.+..+...+..+.+....+.+ +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 478999999999999999998 99999999999999888877777777776533221 11
Q ss_pred --hHHHHHHHHHHHHcccc-cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 124 --EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 124 --d~~i~~ll~~~l~~~~~-~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+.++...+...+..... .....+++-..|.-.+.. + ...+|.+|++++|+++..+|+..|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~--~--~~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETG--L--EKLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCC--c--HHhCCeEEEEECCHHHHHHHHHHcC
Confidence 12223333333322110 111234443344332210 1 1256999999999999999999986
No 45
>PRK13947 shikimate kinase; Provisional
Probab=99.38 E-value=6.1e-12 Score=101.86 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
..|+|+|+|||||||+|+.||+.+|+++++.++++++... . .+.+++. .|...-.+....++. .+..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g--~----~~~~~~~~~ge~~~~~~e~~~~~-~l~~----- 69 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG--M----TVAEIFEKDGEVRFRSEEKLLVK-KLAR----- 69 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC--C----cHHHHHHHhChHHHHHHHHHHHH-HHhh-----
Confidence 4699999999999999999999999999999988776521 1 2222222 222111122222332 2321
Q ss_pred CceEEEc---CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 143 ESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 143 ~~g~IlD---GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..+.|+. |++....+...+.+. +.+|+|+++++.+.+|+..|.
T Consensus 70 ~~~~vi~~g~g~vl~~~~~~~l~~~---~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENVVQLRKN---GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred cCCeEEECCCCCcCCHHHHHHHHhC---CEEEEEECCHHHHHHHhcCCC
Confidence 1122222 233444444555433 579999999999999998764
No 46
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.37 E-value=1.8e-11 Score=98.69 Aligned_cols=112 Identities=23% Similarity=0.238 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
++|+|.|+|||||||+|+.|++++|+++++.++++++..... .+. ..+....... | .+...+...+.... ..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~---~--~~~~~~~~~i~~~~-~~ 73 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL-IEFLNYAEEN---P--EIDKKIDRRIHEIA-LK 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH-HHHHHHHhcC---c--HHHHHHHHHHHHHH-hc
Confidence 368999999999999999999999999999999887643321 111 1111221221 1 11222322222211 12
Q ss_pred CceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++|+||.-.... + ...+|++|+|.+|.++..+|+.+|.
T Consensus 74 ~~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 74 EKNVVLESRLAGWI----V--REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CCCEEEEeccccee----e--cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 46789998633211 1 1246799999999999999999886
No 47
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.37 E-value=1.3e-11 Score=103.23 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh-----------------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE----------------- 124 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd----------------- 124 (238)
+++.|.|+|.|||||||+|+.+++ +|++.|++|++.|+.+.++++....+.+......+-++
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 367899999999999999999998 99999999999999888877766666554332111011
Q ss_pred ------HHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhh-c--CCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 ------DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-V--DVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 ------~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~-~--~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.++..++...+.........++++- .+..|.+. . .+|.||+++||+++..+|+++|.
T Consensus 80 ~~~~Le~i~hPli~~~~~~~~~~~~~~~~~~-------eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~ 145 (201)
T COG0237 80 ARLKLEKILHPLIRAEIKVVIDGARSPYVVL-------EIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD 145 (201)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhCCceEE-------EchHHHhccccccCCEEEEEECCHHHHHHHHHhcC
Confidence 1122222232210000011113332 23444333 2 27899999999999999999997
No 48
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.37 E-value=3.3e-11 Score=95.50 Aligned_cols=109 Identities=19% Similarity=0.238 Sum_probs=67.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCce
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESG 145 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~g 145 (238)
|+|+|+|||||||+++.|++.+|+++++.+++++..... ...+.... .| .+.....-.+.+.... ...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~--~~~~ 70 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLL--TKEN 70 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHh--ccCC
Confidence 789999999999999999999999999999988765432 22211111 11 1222222111122111 1234
Q ss_pred EEEcC---CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 146 FILDG---IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 146 ~IlDG---fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+||++ +..+... .........+|+|++|.+++.+|+..|.
T Consensus 71 ~vi~~g~~~i~~~~~---~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 71 AVIATGGGAVLREEN---RRLLLENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred cEEECCCCccCcHHH---HHHHHcCCeEEEEeCCHHHHHHHhccCC
Confidence 55552 2222222 2222345689999999999999998875
No 49
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.36 E-value=1.2e-12 Score=109.28 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHH-HHHHHHHHcCCCCChHHHH------------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPEDVIF------------ 128 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g-~~i~~~l~~g~~vpd~~i~------------ 128 (238)
.+..|+|.|+|||||||+|+.|++++|+.++..+|++|+.+......+ .......+.|+.++++...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998776432221 1122222333333332221
Q ss_pred ------HHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEec-CHHHHHHHHhcCCC
Q 026464 129 ------ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEA 189 (238)
Q Consensus 129 ------~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~ 189 (238)
.++...+. .+..+|+||......+.+.... .. ..++++.+ +++.+.+|+..|..
T Consensus 82 v~~~L~~va~~~l~-----~G~sVIvEgv~l~p~~~~~~~~-~~-v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 82 IMPGINRVIRRALL-----NGEDLVIESLYFHPPMIDENRT-NN-IRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHH-----cCCCEEEEecCcCHHHHHHHHh-cC-eEEEEEEeCCHHHHHHHHHHHhh
Confidence 12222222 3577999997766655433222 12 35666765 67888899999985
No 50
>PRK13975 thymidylate kinase; Provisional
Probab=99.32 E-value=1e-10 Score=96.71 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHH-HHH------H
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKR------L 135 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll-~~~------l 135 (238)
++.|+|.|++||||||+++.|+++++..+.. ....+.+|+.+++++..+. +++..+..++ ..+ +
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~--------~~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC--------EPTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE--------CCCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999853221 1233567788888776653 3332221111 111 2
Q ss_pred HcccccCCceEEEcCCcCCH--HH---------HHHHHh-hcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 136 EEGYYRGESGFILDGIPRTR--IQ---------AEILDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 136 ~~~~~~~~~g~IlDGfPrt~--~q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.... ....+|+|.|..+. .| ...+.. ...||++|+|++|++++.+|+..|.
T Consensus 73 ~~~~--~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 73 EEDL--KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred HHHH--cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 2111 13568999776431 11 111221 2368999999999999999999885
No 51
>PRK06762 hypothetical protein; Provisional
Probab=99.32 E-value=2.7e-11 Score=97.80 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh--CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
++..|+|.|+|||||||+|+.|++++ ++.+++.+. ++..+..... ..+ ....+.+..++...+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~--- 66 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLG--- 66 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHh---
Confidence 46789999999999999999999999 566777654 4432221100 000 1112233333333332
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHh----hcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+..+|+|+........+.+.. ...+..+|+|++|.+++.+|...|..
T Consensus 67 --~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 67 --HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred --CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 2467899987544333333332 23467899999999999999999864
No 52
>PRK04182 cytidylate kinase; Provisional
Probab=99.32 E-value=2.6e-11 Score=98.50 Aligned_cols=112 Identities=24% Similarity=0.242 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCC-CChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~-~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
++|+|.|+|||||||+|+.||+++|++++++++++++.... +.... .+.+ .+...+. +...+...+.... ..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~-~~~~---~~~~~~~--~~~~~~~~~~~~~-~~ 73 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLE-EFNK---YAEEDPE--IDKEIDRRQLEIA-EK 73 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHH-HHHH---HhhcCch--HHHHHHHHHHHHH-hc
Confidence 36899999999999999999999999999999988875432 11211 1211 2222221 1111222221110 12
Q ss_pred CceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++|+||.-... .+. ..++++|+|++|.+++.+|+..|.
T Consensus 74 ~~~~Vi~g~~~~~----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 74 EDNVVLEGRLAGW----MAK--DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCCEEEEEeecce----Eec--CCCCEEEEEECCHHHHHHHHHhcc
Confidence 4678999842110 011 126899999999999999998875
No 53
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.31 E-value=3.1e-11 Score=101.02 Aligned_cols=119 Identities=19% Similarity=0.247 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChH------------------
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED------------------ 125 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~------------------ 125 (238)
.+|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+..+.+.|+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5799999999999999999987 899999999999998888888888888777655444321
Q ss_pred -----HHHHHHH----HHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 126 -----VIFALLS----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 126 -----~i~~ll~----~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
++...+. +.+.... ..+..+++--.|.-.+. .....+|.+|++++|.++..+|+..|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~-~~~~~~vv~e~plL~e~----g~~~~~D~vi~V~a~~e~ri~Rl~~R~ 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEAR-AQGAKVAVYDMPLLVEK----GLDRKMDLVVVVDVDVEERVRRLVEKR 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHH-hcCCCEEEEEeeceeEc----CccccCCeEEEEECCHHHHHHHHHHcC
Confidence 1111111 1111110 11112333222221110 000257999999999999999999884
No 54
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.31 E-value=6e-11 Score=94.06 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh----HHHHHHHHHHHHcccc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE----DVIFALLSKRLEEGYY 140 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd----~~i~~ll~~~l~~~~~ 140 (238)
.|+|.|+|||||||+|+.|++.++..+++.+++..... ...+..|...++ +....+........ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKL-A 69 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHH-H
Confidence 37899999999999999999999999999877654311 111222222221 11222211111110 0
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh--cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..+.++|+|.......+...+... .....+|+|++|.+++.+|+..|..
T Consensus 70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (150)
T cd02021 70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKG 120 (150)
T ss_pred hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhccc
Confidence 124578888654555555666555 2456799999999999999999863
No 55
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.30 E-value=7.7e-12 Score=103.06 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=92.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh----CCCeechhhhHHhhcCCCChH----HHHHHHHHHcCCCCChHHH-------
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLVRQELSPRSAL----YKQIANAVNEGKLVPEDVI------- 127 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~----g~~~is~~dllr~~~~~~s~~----g~~i~~~l~~g~~vpd~~i------- 127 (238)
+..|+|+||+||||+|+++.|.+.+ ...+..+....|.....+.++ .+.+.+.+.+|..++....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 3568999999999999999999985 233333333333322222222 2677888888887764322
Q ss_pred -HHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEe-cCHHHHHHHHhcCCCCCCCccccccCCCCCC
Q 026464 128 -FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (238)
Q Consensus 128 -~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (238)
.+.+...+.. +..+|+|+.|....|.... ...-.+|++. .+.+.+.+|+.+|.
T Consensus 82 ~~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~---~~~~~vIfi~~~s~~~l~~rl~~R~----------------- 136 (184)
T smart00072 82 SKETIRQVAEQ-----GKHCLLDIDPQGVKQLRKA---QLYPIVIFIAPPSSEELERRLRGRG----------------- 136 (184)
T ss_pred CHHHHHHHHHc-----CCeEEEEECHHHHHHHHHh---CCCcEEEEEeCcCHHHHHHHHHhcC-----------------
Confidence 2345555543 4789999999888876653 2222688887 55577999999875
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 026464 206 AADAASAWKEKFRIYAEQVR 225 (238)
Q Consensus 206 ~dd~~e~v~~Rl~~y~~~~~ 225 (238)
+++.+.+++|+....+...
T Consensus 137 -~~~~~~i~~rl~~a~~~~~ 155 (184)
T smart00072 137 -TETAERIQKRLAAAQKEAQ 155 (184)
T ss_pred -CCCHHHHHHHHHHHHHHHh
Confidence 4567889999998666543
No 56
>PRK13946 shikimate kinase; Provisional
Probab=99.30 E-value=1.1e-10 Score=96.27 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
..+..|+|+|+|||||||+++.||+++|+++++.+.++.+... ....+.+.. .|.....+...+++...+..
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g--~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~--- 79 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR--MTIAEIFAA---YGEPEFRDLERRVIARLLKG--- 79 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC--CCHHHHHHH---HCHHHHHHHHHHHHHHHHhc---
Confidence 3566899999999999999999999999999999887665432 222221111 12211122223344333322
Q ss_pred cCCceEEEcC--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 141 RGESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 141 ~~~~g~IlDG--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
...+|..| .+......+.+.. -.++|+|++|.+++.+|+..|..
T Consensus 80 --~~~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~~~Rl~~r~~ 125 (184)
T PRK13946 80 --GPLVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVLWERVSRRDT 125 (184)
T ss_pred --CCeEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHhcCCCC
Confidence 23344443 2344444444433 35789999999999999988753
No 57
>PRK13948 shikimate kinase; Provisional
Probab=99.30 E-value=7.3e-11 Score=97.40 Aligned_cols=110 Identities=14% Similarity=0.039 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
++..|+|+|+|||||||+++.||+++|.++|++|.++++.. |..+.+++. .|+..-.+...+++...+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~~--- 79 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTRL--- 79 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 56789999999999999999999999999999998887643 233333332 24322223333334333221
Q ss_pred cCCceEEEc---CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhc
Q 026464 141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (238)
Q Consensus 141 ~~~~g~IlD---GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (238)
.+.||. |.+........+.+. ..+|+|+++.+++.+|+..
T Consensus 80 ---~~~VIa~GgG~v~~~~n~~~l~~~---g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 80 ---DYAVISLGGGTFMHEENRRKLLSR---GPVVVLWASPETIYERTRP 122 (182)
T ss_pred ---CCeEEECCCcEEcCHHHHHHHHcC---CeEEEEECCHHHHHHHhcC
Confidence 233444 455555444555442 4689999999999999943
No 58
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.29 E-value=1.6e-11 Score=101.44 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH------cCCCCCh--------------
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVPE-------------- 124 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~------~g~~vpd-------------- 124 (238)
+|+|+|++||||||+++.|++..|++++++|++.++.+..+++....+.+.+. +|. +.-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence 48899999999999999999988899999999999988887776666654432 222 111
Q ss_pred ----HHH----HHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 ----DVI----FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 ----~~i----~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.++ ...+.+.+.+. .....+|+-+.|..... .+. ..+|.+|++++|.++..+|+..|.
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~--~~~~~~vvi~~pll~e~--~~~--~~~D~vv~V~~~~~~~~~Rl~~R~ 145 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQF--QSKLAYVLLDVPLLFEN--KLR--SLCDRVIVVDVSPQLQLERLMQRD 145 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHh--hcCCCEEEEEchHhhhC--CcH--HhCCEEEEEECCHHHHHHHHHHcC
Confidence 111 11222333322 11123555555544321 111 246899999999999999999986
No 59
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.29 E-value=1e-10 Score=94.75 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
..|+|+|+|||||||+++.||+++|+++++.+.++..... ..+.+++. .| .+...+.-.+.+... .
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g------~~~~~~~~~~g----~~~~~~~e~~~~~~~--~- 69 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN------MTVAEIVEREG----WAGFRARESAALEAV--T- 69 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC------CCHHHHHHHHC----HHHHHHHHHHHHHHh--c-
Confidence 4688999999999999999999999999999888775432 11222221 12 121111111222211 1
Q ss_pred CceEEEc-C--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHH
Q 026464 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (238)
Q Consensus 143 ~~g~IlD-G--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~ 219 (238)
...+||. | ++........+. ..+++|+|++|++++.+|+..|.... ++ ..+.... ..++..+.+++|...
T Consensus 70 ~~~~vi~~ggg~vl~~~~~~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~--~r-p~~~~~~-~~~~~~~~~~~r~~~ 142 (171)
T PRK03731 70 APSTVIATGGGIILTEENRHFMR---NNGIVIYLCAPVSVLANRLEANPEED--QR-PTLTGKP-ISEEVAEVLAEREAL 142 (171)
T ss_pred CCCeEEECCCCccCCHHHHHHHH---hCCEEEEEECCHHHHHHHHccccccc--cC-CcCCCCC-hHHHHHHHHHHHHHH
Confidence 1233443 3 344444444443 34679999999999999998864211 00 0000000 013345677888888
Q ss_pred HHH
Q 026464 220 YAE 222 (238)
Q Consensus 220 y~~ 222 (238)
|.+
T Consensus 143 y~~ 145 (171)
T PRK03731 143 YRE 145 (171)
T ss_pred HHH
Confidence 876
No 60
>PLN02422 dephospho-CoA kinase
Probab=99.28 E-value=6.4e-11 Score=101.11 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH------cCCCCCh-------------
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVPE------------- 124 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~------~g~~vpd------------- 124 (238)
..|.|+|++||||||+++.|+ ++|++++++|++.++.+.+++.....+.+.+. +|. +.-
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCCHHH
Confidence 469999999999999999998 68999999999999988887776666665542 232 221
Q ss_pred -----HHHHHHHHHHHH----cccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 -----DVIFALLSKRLE----EGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 -----~~i~~ll~~~l~----~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+++...+...+. +........+|+| .|.-.+- .+ ...+|.||+++||.++..+|+..|+
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E~--~~--~~~~D~vI~V~a~~e~ri~RL~~R~ 147 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFET--KM--DKWTKPVVVVWVDPETQLERLMARD 147 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhhc--ch--hhhCCEEEEEECCHHHHHHHHHHcC
Confidence 122222222222 1100112234443 3322210 00 1247999999999999999999986
No 61
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.27 E-value=1.8e-10 Score=95.16 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCC--CChHHHH--------HHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIF--------ALLS 132 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~--vpd~~i~--------~ll~ 132 (238)
++.|+|.|+|||||||+++.|++.++..-..+ +....+..+++|+.+++++..+.. ..+.... ..+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 79 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDV---LFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLE 79 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999985421111 011122356788888887654432 2221111 1112
Q ss_pred HHHHcccccCCceEEEcCC----------cCCHH--HHHHHHh-hcC--CCEEEEEecCHHHHHHHHhcCCC
Q 026464 133 KRLEEGYYRGESGFILDGI----------PRTRI--QAEILDQ-IVD--VDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 133 ~~l~~~~~~~~~g~IlDGf----------Prt~~--qa~~l~~-~~~--~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..+.... ..+..+|+|.+ +++.. +...+.. ... ||++|+|++|++++.+|+..|..
T Consensus 80 ~~i~~~l-~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 80 DKIKPAL-AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHHHHH-hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 2222111 12345778843 33222 2223322 223 99999999999999999998863
No 62
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.24 E-value=2.5e-10 Score=94.80 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHc--CCCCChHHHHHHH-------H
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE--GKLVPEDVIFALL-------S 132 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~--g~~vpd~~i~~ll-------~ 132 (238)
+++.|+|.|++||||||+++.|++.++.....+ .+..+ ...+..|+.+++.+.. ....+.....-.+ .
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~--~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDV--VFTRE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE 78 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCce--eEeeC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999873321111 11112 2246688888888774 2222222111111 1
Q ss_pred HHHHcccccCCceEEEcCCcCC------------HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 133 KRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 133 ~~l~~~~~~~~~g~IlDGfPrt------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..+.... ..+..+|+|-++-+ ..+...+... ..||++|+|++|++++.+|+..|+
T Consensus 79 ~~i~~~l-~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 79 EVIKPAL-ARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred HHHHHHH-HCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1111110 12467899955432 1222233322 458999999999999999999987
No 63
>PLN02924 thymidylate kinase
Probab=99.24 E-value=6.3e-10 Score=94.49 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=81.3
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHH-----------
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------- 128 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~----------- 128 (238)
+.+++.|+|.|++||||||+++.|++.+....+.+ .++++ ...++..|+.+++++..+..+.+....
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~ 90 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR 90 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999997666654 23332 334688999999998876655443221
Q ss_pred HHHHHHHHcccccCCceEEEcCCcCC--HHH---------HHHHHh-hcCCCEEEEEecCHHHHHHHHh
Q 026464 129 ALLSKRLEEGYYRGESGFILDGIPRT--RIQ---------AEILDQ-IVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 129 ~ll~~~l~~~~~~~~~g~IlDGfPrt--~~q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
..+...+. .+..+|.|-|..+ ..| ...+.. ...||++|+|++|+++..+|..
T Consensus 91 ~~I~pal~-----~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 91 SLMERKLK-----SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHH-----CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 11222222 3467899987653 122 111211 1369999999999999999964
No 64
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.23 E-value=2.6e-11 Score=95.15 Aligned_cols=103 Identities=22% Similarity=0.276 Sum_probs=65.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~ 144 (238)
+|+|.|+|||||||+|+.|++++|+++++.+.+-.+. ......... ....+...+.+.+.+. ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~------~~~~~~~~~------~~~~i~~~l~~~~~~~--~~~~ 66 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEE------VGKLASEVA------AIPEVRKALDERQREL--AKKP 66 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHH------HHHHHHHhc------ccHhHHHHHHHHHHHH--hhCC
Confidence 4789999999999999999999999999998443221 111111100 0011122222222221 1235
Q ss_pred eEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
.||+||...... + ....+++|+|++|++...+|+..|
T Consensus 67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHHH
Confidence 799999743211 0 124689999999999999999885
No 65
>PRK06547 hypothetical protein; Provisional
Probab=99.23 E-value=7.6e-11 Score=96.44 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=73.5
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHH-HHcCCCC--ChHHHHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANA-VNEGKLV--PEDVIFALLSKRLE 136 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~-l~~g~~v--pd~~i~~ll~~~l~ 136 (238)
+.++.+|+|.|++||||||+++.|++.++++.++++++....-. .....+.+.+. +..|+.. +-+........ +.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~-~~ 89 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGD-WV 89 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCC-cE
Confidence 46788999999999999999999999999999999988753211 11111222222 2333221 10000000000 00
Q ss_pred cccccCCceEEEcCCcCCHHH-HHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 137 EGYYRGESGFILDGIPRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 137 ~~~~~~~~g~IlDGfPrt~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
. ......+|++|.-....+ ...+++ ....++|+|++|.++..+|+..|.
T Consensus 90 ~--l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 90 S--VEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred E--eCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcC
Confidence 0 112456889986332222 122222 223389999999999999999985
No 66
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.23 E-value=1.2e-10 Score=97.88 Aligned_cols=122 Identities=10% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH--------cCCC-CChHH------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN--------EGKL-VPEDV------ 126 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~--------~g~~-vpd~~------ 126 (238)
.+..|.|+|++||||||+++.|++ +|++.++.|.+.++...++......+...+. .|.. +.-..
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 457899999999999999999986 9999999999988877666554444443331 1221 21111
Q ss_pred ------------HHHHHH----HHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 127 ------------IFALLS----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 127 ------------i~~ll~----~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+...+. ..+.... ..+..+++-+.|.-.+. . ....+|.+|++++|+++..+|+..|+.
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~-~~~~~vvv~e~pLL~e~-~---~~~~~d~ii~V~a~~e~~~~Rl~~R~~ 156 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAA-RRGKRILVKEAAILFES-G---GDAGLDFIVVVAADTELRLERAVQRGM 156 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHH-hcCCCEEEEEeeeeeec-C---chhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 111222 2222110 11234555555532221 0 012569999999999999999999963
No 67
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.23 E-value=3.3e-12 Score=97.48 Aligned_cols=110 Identities=24% Similarity=0.311 Sum_probs=61.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc-ccCC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGE 143 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~-~~~~ 143 (238)
+|+|.|+|||||||+|+.|++++|+++++++++++....... ..+..-......+.+...++... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIER----------DDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHG----------CTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccccc----------CcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 589999999999999999999999999999995432211100 00000001112222333332210 1235
Q ss_pred ceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..||+||.-. .. ..+ .....+.+|++.++.++..+|+.+|+
T Consensus 71 ~~~ii~g~~~-~~--~~~-~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 71 DNWIIDGSYE-SE--MEI-RLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp -EEEEECCSC-HC--CHS-CCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred CeEEEeCCCc-cc--hhh-hhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 7899999311 11 011 11234578999988885555555543
No 68
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.23 E-value=1.9e-10 Score=99.05 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV 116 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l 116 (238)
+++|.|+|++||||||+++.|.+++|+++|+.|.+.++.+.++++..+.+.+.+
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~F 54 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARW 54 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHh
Confidence 367999999999999999999999999999999999998888877766666544
No 69
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.22 E-value=1e-10 Score=111.39 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=80.0
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHH-HcCCCCChHHHHHHHHHHHHc
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEE 137 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l-~~g~~vpd~~i~~ll~~~l~~ 137 (238)
.|.|..+|+|+|+|||||||+++.||+++|++++++|+++.+.. |..+.+++ ..|+...-++-.+++.+-+..
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~ 75 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED 75 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36677889999999999999999999999999999999988753 34455554 345444444445555443322
Q ss_pred ccccCCceEEEc--CCcCCHHHHHHHHhhc-CCCEEEEEecCHHHHHHHHhcCC
Q 026464 138 GYYRGESGFILD--GIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 138 ~~~~~~~g~IlD--GfPrt~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+|-- |.+.+......|.++. .-..||+|+++.+++.+|+..+.
T Consensus 76 -----~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~ 124 (542)
T PRK14021 76 -----FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGG 124 (542)
T ss_pred -----CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCC
Confidence 1223322 3455544444443321 22379999999999999996543
No 70
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.21 E-value=1.1e-10 Score=94.15 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
.+..|+|+|+|||||||+|+.||+++|+++++.++++++.... +....+. ..|...-.+....++...+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~l~~~---- 73 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFE---EEGEAAFRELEEEVLAELLAR---- 73 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHH---HHCHHHHHHHHHHHHHHHHhc----
Confidence 5678999999999999999999999999999999988764332 2221111 122211112222333332221
Q ss_pred CCceEEEcC--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 142 ~~~g~IlDG--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+|..| +.........|. ....+|+|++|.+.+.+|+..|.
T Consensus 74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCC
Confidence 12344433 222222233332 23579999999999999998765
No 71
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.18 E-value=3.2e-10 Score=92.63 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=67.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
+..|+|+|++||||||+++.|++.+|+++++.+..+.+.... ++..... ..|...--+.-.+++.. +..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~--~i~~~~~---~~g~~~fr~~e~~~l~~-l~~----- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA--DIGWVFD---VEGEEGFRDREEKVINE-LTE----- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc--CHhHHHH---HhCHHHHHHHHHHHHHH-HHh-----
Confidence 457999999999999999999999999999999876654321 1111111 11211001111223322 221
Q ss_pred CceEEEc-C--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 143 ~~g~IlD-G--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++|+. | .+.+......|.+ .+.+|+|++|.+++.+|+..+.
T Consensus 73 ~~~~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~~e~~~~Ri~~~~ 118 (172)
T PRK05057 73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDK 118 (172)
T ss_pred CCCEEEEcCCchhCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCC
Confidence 1234443 2 2333333344443 3589999999999999997654
No 72
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.17 E-value=1.8e-09 Score=88.60 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHHhhcCCCChHHHHHHHHHHcCC---CCChHHHH-------HH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK---LVPEDVIF-------AL 130 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~---~vpd~~i~-------~l 130 (238)
+.|+|.|++||||||+++.|++.+ |..++.+.. ...+..|+.+++++..+. ..+..... ..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999998 655554432 123456677777766542 11211111 11
Q ss_pred HHHHHHcccccCCceEEEcCCcCC------------HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 131 LSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGfPrt------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+...+... ...+..+|+|.++.+ ..+...+... ..|+.+|+|++|++++.+|+.+|+.
T Consensus 75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 148 (200)
T cd01672 75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGR 148 (200)
T ss_pred HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 11112211 123567899955522 1222333221 3689999999999999999999874
No 73
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.17 E-value=3.9e-10 Score=94.60 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=76.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHH-----HcCCCCCh-----------
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-----NEGKLVPE----------- 124 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l-----~~g~~vpd----------- 124 (238)
..|..|.|+|++||||||+++.|++++|+++++.|.+.++.+.. ......+.+.+ .+|. +.-
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~ 81 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESK 81 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCH
Confidence 35678999999999999999999999999999999999887665 34444444332 1222 221
Q ss_pred -------HHHHHHHHHHHHcccc-cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 125 -------DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 125 -------~~i~~ll~~~l~~~~~-~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+++...+.+.+.+... ....-+++| .|.-.+.. +.....+|.+|++.||.++.++|+..|..
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ipLL~E~~--~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~ 151 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IPLLGPYN--FRHYDYLKKVIVIKADLETRIRRLMERDG 151 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-echhhhcc--CchhhhCCEEEEEECCHHHHHHHHHHcCC
Confidence 1222233333321110 112234454 23221110 00012469999999999999999999863
No 74
>PLN02199 shikimate kinase
Probab=99.17 E-value=1.5e-09 Score=95.31 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=71.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
.+..|+|+|++||||||+++.||+.+|+++|++|.++++... +. .+.+++. .|+..-.+...+++.+....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~----sI~eIf~~~GE~~FR~~E~e~L~~L~~~--- 172 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GT----SVAEIFVHHGENFFRGKETDALKKLSSR--- 172 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CC----CHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 356799999999999999999999999999999999987533 22 2333332 34333333444444443221
Q ss_pred cCCceEEEc---CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhc
Q 026464 141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (238)
Q Consensus 141 ~~~~g~IlD---GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (238)
.+.||. |.+........+.. ..||+|++|.+++.+|+..
T Consensus 173 ---~~~VIStGGG~V~~~~n~~~L~~----G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 173 ---YQVVVSTGGGAVIRPINWKYMHK----GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred ---CCEEEECCCcccCCHHHHHHHhC----CeEEEEECCHHHHHHHHhh
Confidence 122332 23333333333431 4799999999999999985
No 75
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.16 E-value=2e-10 Score=94.66 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC-----CCCh--------------
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE-------------- 124 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~-----~vpd-------------- 124 (238)
+.|.|+|+.||||||+++.|++ +|++++++|++.++.+.++++....+.+.+.... .+.-
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4689999999999999999988 9999999999999999888888877777654221 1211
Q ss_pred ----HHHHHHHHHHHHccc--ccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 ----DVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 ----~~i~~ll~~~l~~~~--~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.++..++.+.+.... ......+|+| .|.-.+- .+ ...+|.||++.||.++..+|+..|.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~~--~~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--GL--EKLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TG--GGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--hH--hhhhceEEEEECCHHHHHHHHHhhC
Confidence 122233333332110 0112345554 3322110 00 1247999999999999999999985
No 76
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=8.8e-10 Score=90.29 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=93.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCCh--------HHHHHHHHHHcCCCCChH--------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPED-------- 125 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~--------~g~~i~~~l~~g~~vpd~-------- 125 (238)
+++.++|.||+|+||||+++.|-+.. -.++|++.--|.- .++.. .-+.+.+++.+|+.+.-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 68899999999999999999999998 5566665555532 22211 125677778887765421
Q ss_pred HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCH-HHHHHHHhcCCCCCCCccccccCCCCC
Q 026464 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIE-DQLVKRNLESEAFSPHKEFLRLGGARF 204 (238)
Q Consensus 126 ~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~-e~l~~Rl~~R~~~~~~~~~~~~~~~~~ 204 (238)
+-..-+...+.. +..+||| -+.+-|..+....+.-..|++.+|. +.+.+||.+|+
T Consensus 81 T~~~~ve~~~~~-----G~~vild---Id~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg---------------- 136 (191)
T COG0194 81 TSREPVEQALAE-----GKDVILD---IDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRG---------------- 136 (191)
T ss_pred CcHHHHHHHHhc-----CCeEEEE---EehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC----------------
Confidence 123334444443 3567776 3344455554444433445555543 89999999987
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH
Q 026464 205 SAADAASAWKEKFRIYAEQVRDATL 229 (238)
Q Consensus 205 ~~dd~~e~v~~Rl~~y~~~~~~l~~ 229 (238)
.|+++++++||..++...+...+
T Consensus 137 --tds~e~I~~Rl~~a~~Ei~~~~~ 159 (191)
T COG0194 137 --TDSEEVIARRLENAKKEISHADE 159 (191)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999998876554
No 77
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.13 E-value=8e-10 Score=98.37 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHH
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRL 135 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l 135 (238)
...+.++..|+|+|+|||||||+++.|++++|+++++++..+.+... .. +.+... .|...-.+...+.+...+
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G--~~----i~ei~~~~G~~~fr~~e~~~l~~ll 200 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG--LS----VSEIFALYGQEGYRRLERRALERLI 200 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC--CC----HHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 34566778999999999999999999999999999999877765422 11 222221 232211223333344333
Q ss_pred HcccccCCceEEEcCC--cCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 136 EEGYYRGESGFILDGI--PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 136 ~~~~~~~~~g~IlDGf--Prt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
... ...+|-.|. +......+.+ ....++|+|++|.+++.+|+.+|.
T Consensus 201 ~~~----~~~VI~~Ggg~v~~~~~~~~l---~~~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 201 AEH----EEMVLATGGGIVSEPATFDLL---LSHCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred hhC----CCEEEECCCchhCCHHHHHHH---HhCCEEEEEECCHHHHHHHHhcCC
Confidence 321 122333332 2222222222 223579999999999999998875
No 78
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.12 E-value=3.3e-10 Score=91.08 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=65.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChH----HH---HHHHHHHHHcc
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED----VI---FALLSKRLEEG 138 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~----~i---~~ll~~~l~~~ 138 (238)
|+|+|+|||||||+++.|++.++.++++.+++..... +.. +..|...+++ .. .+.+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAAN---------IEK-MSAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHH---------HHH-HHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 5789999999999999999999999999988743210 000 1112111111 11 1222222222
Q ss_pred cccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+...+|..++.+ ....+.+........+|+|++|.+++.+|+..|..
T Consensus 70 ---~~~~Vi~~t~~~-~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 116 (163)
T TIGR01313 70 ---NKVGIITCSALK-RHYRDILREAEPNLHFIYLSGDKDVILERMKARKG 116 (163)
T ss_pred ---CCCEEEEecccH-HHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccC
Confidence 223344455543 33334444433334579999999999999999863
No 79
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.11 E-value=1.9e-09 Score=92.81 Aligned_cols=109 Identities=24% Similarity=0.343 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
.|+|+|+|||||||+|+.|++.++ +.+++. |.+++........++ ..+ .+....++...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~~~e---~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKEKYE---EFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhHHhH---HHH-------HHHHHHHHHHHHhC--
Confidence 378999999999999999999873 345554 455543321111111 111 12233445554443
Q ss_pred ccCCceEEEcCCcCCHHHHHHHH----hhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+..+|+||......+...+. ....+..+|+|++|.+++.+|...|..
T Consensus 68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~ 118 (249)
T TIGR03574 68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE 118 (249)
T ss_pred ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence 34589998765444433332 234567899999999999999988863
No 80
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.09 E-value=6.1e-10 Score=92.96 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=75.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH------cCCCCCh---------------
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVPE--------------- 124 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~------~g~~vpd--------------- 124 (238)
|.|+|++||||||+++.|++ +|.++++.|++.++.+.++....+.+.+.+. +|. +.-
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDEEKLK 79 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCHHHHH
Confidence 78999999999999999964 7999999999999888777776666665442 222 111
Q ss_pred ---HHHHHHHHHHHHcccc-cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 ---DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 ---~~i~~ll~~~l~~~~~-~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+++...+.+.+..... .....+++-..|.-.+.- -...+|.+|++++|.++..+|+..|.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~----~~~~~D~vi~V~a~~e~r~~RL~~R~ 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETD----AYTLCDATVTVDSDPEESILRTISRD 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcC----chhhCCEEEEEECCHHHHHHHHHHcC
Confidence 1222222222221100 011235544455432210 01246999999999999999999985
No 81
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.09 E-value=3.6e-09 Score=89.00 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=82.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcC-CCCChHHHH--------HHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-KLVPEDVIF--------ALLS 132 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g-~~vpd~~i~--------~ll~ 132 (238)
+++.|+|-|.-||||||+++.|++.+.-..+.+ +...-+.++++|+.+++++.++ ..+.+.... +.+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v---~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV---VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999984443322 2223355699999999999887 334433221 1122
Q ss_pred HHHHcccccCCceEEEcCCcCC--HHH----------HHHHHhhc----CCCEEEEEecCHHHHHHHHhcCCC
Q 026464 133 KRLEEGYYRGESGFILDGIPRT--RIQ----------AEILDQIV----DVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 133 ~~l~~~~~~~~~g~IlDGfPrt--~~q----------a~~l~~~~----~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+.+.... ..+..+|.|.|-.+ ..| ...+.+.. .||++++|++|+++.++|+.+|+.
T Consensus 79 ~~i~pal-~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~ 150 (208)
T COG0125 79 EVIKPAL-KEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE 150 (208)
T ss_pred HHHHHhh-cCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 2222211 23467888876432 233 22222222 689999999999999999999975
No 82
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.09 E-value=1.2e-09 Score=100.43 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC-----CCCh--------------
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE-------------- 124 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~-----~vpd-------------- 124 (238)
++|.|+|++||||||+|+.|++ +|+++|++|.+.++.+.+++.....+.+.+..+. .+.-
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999987 8999999999999988877665555554432221 1111
Q ss_pred ----HHHHHHHHHHHHcccc-cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 ----DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 ----~~i~~ll~~~l~~~~~-~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.++...+..++.+... ..+..+|+.+.|.-.+.. + ...+|.+|++++|.++.++|+..|+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~--~--~~~~D~iI~V~ap~e~ri~Rl~~rR 145 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESG--M--APLFHLVVVVDADVEVRVRRLVEQR 145 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCC--c--hhhCCEEEEEECCHHHHHHHHHhcC
Confidence 1122222222221100 123457777766433310 0 1246899999999999999998853
No 83
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.08 E-value=2.2e-09 Score=88.51 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCC-----ChHHHHHHHHHHcCCCCChHHHH--------H
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-----SALYKQIANAVNEGKLVPEDVIF--------A 129 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~-----s~~g~~i~~~l~~g~~vpd~~i~--------~ 129 (238)
+..++|+||+||||||+++.|+..++..++..+..+....... ...++.....+++|.... .+.. .
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFAL-SWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhh-HHHHhCCccCCcH
Confidence 4578999999999999999999988766555444333221110 112344444555554321 1110 0
Q ss_pred HHHHHHHcccccCCceEEEcCCcCCHHHHHHHH-hhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILD-QIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~-~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
-+...+.. +..+|++|. ......+. .......+|+|++|.+++.+|+.+|.
T Consensus 81 ~~~~~l~~-----g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 81 EIDLWLHA-----GFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred HHHHHHhC-----CCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 13333433 355888877 11112222 22345678999999999999998875
No 84
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.06 E-value=4.4e-09 Score=86.26 Aligned_cols=117 Identities=17% Similarity=0.260 Sum_probs=73.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHH---HHHHHHHHHHccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV---IFALLSKRLEEGY 139 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~---i~~ll~~~l~~~~ 139 (238)
+..++|+|++||||||+++.|+..++..+++.+++... ..+++ +..|....++. ....+........
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 45689999999999999999999999988887765321 01111 12333333221 1222222211110
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCC
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (238)
.....|+|+..+-+ ..+.+.+.+...+..+|+|++|++++.+|+.+|..+
T Consensus 73 ~~~~~g~iv~s~~~-~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~ 122 (176)
T PRK09825 73 KKNETGFIVCSSLK-KQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGH 122 (176)
T ss_pred hcCCCEEEEEEecC-HHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCC
Confidence 12257888866643 333445555566678999999999999999999743
No 85
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.02 E-value=2e-09 Score=101.32 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccc--
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY-- 140 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~-- 140 (238)
++|+|+|+|||||||+++.||+++|++++++|+++.+... ..+.+++. .|+....+.-.+.+++......+
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g------~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG------RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV 74 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC------CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence 3689999999999999999999999999999998876422 11222221 23322223333334332221100
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 141 RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..+.|+|+| ....+.|.+ ..+|+|+++.+++.+|+..+.
T Consensus 75 s~Gggvv~~-----~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~~ 113 (488)
T PRK13951 75 ATGGGVVID-----PENRELLKK----EKTLFLYAPPEVLMERVTTEN 113 (488)
T ss_pred ECCCccccC-----hHHHHHHhc----CeEEEEECCHHHHHHHhccCC
Confidence 112333333 344444543 359999999999999997653
No 86
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=3.2e-09 Score=84.45 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHH---HHHHccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS---KRLEEGY 139 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~---~~l~~~~ 139 (238)
+-.|+++|+.||||||+++.|++++++++++.||+...+ =.+.|.+|..+.|+--...++ ..+....
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~----------NveKM~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA----------NVEKMTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH----------HHHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 346889999999999999999999999999999987542 134478898888764333322 2222111
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHhhc----------CCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQIV----------DVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~~~----------~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..++++||-.-..-....+.|.+.. .--.+|+|.++.|++.+|+..|.-
T Consensus 82 -~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 82 -ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG 140 (191)
T ss_pred -hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc
Confidence 1368888876555455555555421 124699999999999999999974
No 87
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.00 E-value=5e-09 Score=87.25 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCC---CCh----HHHHHHHHHHcCCCCCh-----HH---
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPE-----DV--- 126 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~---~s~----~g~~i~~~l~~g~~vpd-----~~--- 126 (238)
.+..|+|+||+||||||+++.|+..++..++.+....|+-... +.+ -.+.+.+.+.+|..+.. ..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 5678999999999999999999998863333333222221110 000 11344444555543321 11
Q ss_pred HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC
Q 026464 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (238)
Q Consensus 127 i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (238)
....+...+.. +.-+|+|.-+.. +..+.+. ..+-.|+++.++.+++.+|+..|.
T Consensus 84 ~~~~i~~~l~~-----g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~----------------- 138 (205)
T PRK00300 84 PRSPVEEALAA-----GKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRG----------------- 138 (205)
T ss_pred cHHHHHHHHHc-----CCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcC-----------------
Confidence 12223344433 345778865533 3333333 233335555677899999999886
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 026464 206 AADAASAWKEKFRIYAEQVRD 226 (238)
Q Consensus 206 ~dd~~e~v~~Rl~~y~~~~~~ 226 (238)
+++++.+++|+..+..++.+
T Consensus 139 -~~~~~~i~~rl~~~~~~~~~ 158 (205)
T PRK00300 139 -TDSEEVIARRLAKAREEIAH 158 (205)
T ss_pred -CCCHHHHHHHHHHHHHHHHh
Confidence 34567888888888776644
No 88
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.00 E-value=1e-08 Score=83.69 Aligned_cols=121 Identities=16% Similarity=0.176 Sum_probs=67.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC--eechhhhHHhhcCCCChHHHHHHHHH-HcC--CCCChHH---HHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAV-NEG--KLVPEDV---IFALLSKR 134 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~s~~g~~i~~~l-~~g--~~vpd~~---i~~ll~~~ 134 (238)
+..|+|.|+|||||||+++.|++.++.+ |++.|++... +..... . . ...+ .++ ...|.+. +...+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQ-D-A-EGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhc-c-c-ccccccCccCCcccchHHHHHHHHHHHH
Confidence 4579999999999999999999998654 4577665543 221000 0 0 0000 011 1122221 22222222
Q ss_pred HHcccccCCceEEEcC-CcCCHHHHHHHHhhc-CCCEEEEEecCHHHHHHHHhcCC
Q 026464 135 LEEGYYRGESGFILDG-IPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 135 l~~~~~~~~~g~IlDG-fPrt~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+.... ..+..+|+|. ++......+.+.... .+-..|++.||.+++.+|+.+|.
T Consensus 78 ~~~~l-~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 78 VAAMA-RAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHH-hCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 22211 2356789996 442222223333332 34578999999999999999986
No 89
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.99 E-value=1.8e-10 Score=88.03 Aligned_cols=112 Identities=20% Similarity=0.104 Sum_probs=58.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcc-cccCCc
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG-YYRGES 144 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~-~~~~~~ 144 (238)
|+|.|+|||||||+|+.|+++++..+. +.............. ...........+....++....+.. ......
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIR---DIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHH---HHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHH---HHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 789999999999999999999822211 112111110000000 0011222233333222222222110 012357
Q ss_pred eEEEcCCcCCHHHHHHHHhhcCCCEE-EEEecCHHHHHHHHhcCCC
Q 026464 145 GFILDGIPRTRIQAEILDQIVDVDLV-INFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 145 g~IlDGfPrt~~qa~~l~~~~~~d~v-I~L~~~~e~l~~Rl~~R~~ 189 (238)
.+|+||........ ...... |+|+||++++.+|+..|..
T Consensus 75 ~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 75 NIIIDGILSNLELE------RLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp CEEEEESSEEECET------TEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred cEEEecccchhccc------ccceeeEEEEECCHHHHHHHHHhCCC
Confidence 78999876532211 011223 9999999999999999875
No 90
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.98 E-value=2.7e-09 Score=86.97 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCC---Ch----HHHHHHHHHHcCCCCChH--------HH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPED--------VI 127 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~---s~----~g~~i~~~l~~g~~vpd~--------~i 127 (238)
+..|+|+||+||||||+++.|++.++..+++.....|+..... .. ....+.+.+..|..+... ..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 3579999999999999999999987666665544444322110 00 012344445555543321 11
Q ss_pred HHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHh-hcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCC
Q 026464 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (238)
Q Consensus 128 ~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~ 206 (238)
...+...+.+ +..+|+|.- ...+..+.. ...+..++++..+++.+.+|+..|.
T Consensus 81 ~~~i~~~~~~-----g~~vi~d~~---~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~------------------ 134 (180)
T TIGR03263 81 KSPVEEALAA-----GKDVLLEID---VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRG------------------ 134 (180)
T ss_pred HHHHHHHHHC-----CCeEEEECC---HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC------------------
Confidence 2334444443 356888854 333333433 3344456666777899999999876
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 026464 207 ADAASAWKEKFRIYAEQV 224 (238)
Q Consensus 207 dd~~e~v~~Rl~~y~~~~ 224 (238)
+++++.+++|+..+..+.
T Consensus 135 ~~~~~~i~~rl~~~~~~~ 152 (180)
T TIGR03263 135 TDSEEVIERRLAKAKKEI 152 (180)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 345678999998887654
No 91
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.97 E-value=1e-08 Score=83.59 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=63.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHH----HHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV----IFALL 131 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~----i~~ll 131 (238)
.++..|+|.|+|||||||+++.|+++++ ..+++. |-+++..... |...+.+. ....+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~-------------~~~~~~~~~~~~~~~~l 70 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHY-------------GYDKQSRIEMALKRAKL 70 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCC-------------CCCHHHHHHHHHHHHHH
Confidence 3677899999999999999999999985 455554 3445433211 00001111 11112
Q ss_pred HHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhc
Q 026464 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (238)
...+.. .+..+|+||......-.........+..+|+|++|.+++.+|+..
T Consensus 71 ~~~l~~----~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 71 AKFLAD----QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HHHHHh----CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 222221 245688887542111111112234556899999999999999864
No 92
>PRK13976 thymidylate kinase; Provisional
Probab=98.96 E-value=3.2e-08 Score=83.42 Aligned_cols=117 Identities=12% Similarity=0.011 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCC--eechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHH------------HH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI------------FA 129 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i------------~~ 129 (238)
+.|+|.|..||||||+++.|++.+.-. ...+ .+.+ .+.++.+|+.+++++.....+..... .+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v-~~~~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV-VLTR--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce-EEee--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999988431 1111 0111 23467889999988764222332211 11
Q ss_pred HHHHHHHcccccCCceEEEcCCcCC------------HHHHHHHHhh---cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 130 LLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI---VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDGfPrt------------~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
++...++ .+..+|.|.|..+ ......+... ..||++|+|++|+++..+|+..++
T Consensus 78 ~I~p~l~-----~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~ 146 (209)
T PRK13976 78 VILPALL-----QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNG 146 (209)
T ss_pred HHHHHHH-----CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccc
Confidence 2222222 2456788866433 1223333322 269999999999999999996554
No 93
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.94 E-value=4.9e-09 Score=87.99 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCe-echhhhHHh--hc-CCCCh----HHHHHHHHHHcCCCCChH-----
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQ--EL-SPRSA----LYKQIANAVNEGKLVPED----- 125 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~-is~~dllr~--~~-~~~s~----~g~~i~~~l~~g~~vpd~----- 125 (238)
.|.++..|+|+||+||||||+++.|.+.. ..+ +.....-|. .. ..+.. --+.+.+.+.+|..+.-.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence 35688899999999999999999998642 111 111000110 00 01100 012445555556544311
Q ss_pred ---HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecC--HHHHHHHHhcCCCCCCCccccccC
Q 026464 126 ---VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI--EDQLVKRNLESEAFSPHKEFLRLG 200 (238)
Q Consensus 126 ---~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~--~e~l~~Rl~~R~~~~~~~~~~~~~ 200 (238)
+-..-+...+++ +..+|+|.-+ ..+..+.+. .||.++++.+| .+++.+|+.+|..
T Consensus 88 ~YGt~~~~i~~~~~~-----g~~vi~~~~~---~g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~~----------- 147 (206)
T PRK14738 88 YYGVPKAPVRQALAS-----GRDVIVKVDV---QGAASIKRL-VPEAVFIFLAPPSMDELTRRLELRRT----------- 147 (206)
T ss_pred eecCCHHHHHHHHHc-----CCcEEEEcCH---HHHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcCC-----------
Confidence 111234444443 3457887644 344445443 47777777764 5689999998862
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHH
Q 026464 201 GARFSAADAASAWKEKFRIYAEQV 224 (238)
Q Consensus 201 ~~~~~~dd~~e~v~~Rl~~y~~~~ 224 (238)
++++.+.+|+..+....
T Consensus 148 -------~~~~~~~~Rl~~~~~e~ 164 (206)
T PRK14738 148 -------ESPEELERRLATAPLEL 164 (206)
T ss_pred -------CCHHHHHHHHHHHHHHH
Confidence 34456777777665544
No 94
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.94 E-value=6.4e-09 Score=83.64 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=67.4
Q ss_pred CCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccccCCceEEEc-
Q 026464 72 PGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRGESGFILD- 149 (238)
Q Consensus 72 PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~~~~~g~IlD- 149 (238)
|||||||+++.||+.+|++++++|+++.+... ..+.+++. .|...-.+...+++.+.+.. .+.||.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~------~~~VIa~ 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKE------NNCVIAC 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCS------SSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhcc------CcEEEeC
Confidence 79999999999999999999999999976533 34444443 22211122334444433332 144443
Q ss_pred --CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 150 --GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 150 --GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
|.+......+.|.+. ..||+|+++.+++.+|+..+..
T Consensus 69 GGG~~~~~~~~~~L~~~---g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 69 GGGIVLKEENRELLKEN---GLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp -TTGGGSHHHHHHHHHH---SEEEEEE--HHHHHHHHHHHCT
T ss_pred CCCCcCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHhCCCC
Confidence 467777766777633 4699999999999999977653
No 95
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.93 E-value=2e-08 Score=85.04 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhH-Hh-hcCCCChHHHH------HHHHHHcCC---CCChHHHHHHHHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV-RQ-ELSPRSALYKQ------IANAVNEGK---LVPEDVIFALLSK 133 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dll-r~-~~~~~s~~g~~------i~~~l~~g~---~vpd~~i~~ll~~ 133 (238)
.|+|.|..||||||+++.|+++++..++...... .. .-..++.+++. ++.+..+.. ........-++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4889999999999999999999987655332111 00 00111222221 334433322 1222222222222
Q ss_pred HHHcc------cccCCceEEEcCCcCCH--HH----------------HHHHH-----hhcCCCEEEEEecCHHHHHHHH
Q 026464 134 RLEEG------YYRGESGFILDGIPRTR--IQ----------------AEILD-----QIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 134 ~l~~~------~~~~~~g~IlDGfPrt~--~q----------------a~~l~-----~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
+.... ....+..+|+|.++-+. .| ...+. ....||++|+|++|++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 22210 00134678999875331 10 01111 1136899999999999999999
Q ss_pred hcCCC
Q 026464 185 LESEA 189 (238)
Q Consensus 185 ~~R~~ 189 (238)
..|+.
T Consensus 161 ~~R~~ 165 (219)
T cd02030 161 KKRGD 165 (219)
T ss_pred HHcCC
Confidence 98873
No 96
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.93 E-value=1.2e-08 Score=85.41 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=68.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~ 137 (238)
.++.+|.|.|++||||||+++.|++.++ +.+++.++........ +...............+.+.+.+.+......
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 4788999999999999999999999983 4567787765432110 0000000000000111112222222211110
Q ss_pred c-------------------cccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 138 G-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 138 ~-------------------~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
. ......-+|+||..--.. ..+. ..+|.+|++++|.++.++|...|..
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~~~R~~~Rd~ 148 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIRLIRRLKRDV 148 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHHHHHHHhhcc
Confidence 0 011234678898754221 0111 2468999999999999999988864
No 97
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.92 E-value=3.1e-08 Score=80.79 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCC---eechhhhHHhhcCCCChH----HHHHHHHHHcCCCC--Ch------HHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSAL----YKQIANAVNEGKLV--PE------DVIF 128 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~~s~~----g~~i~~~l~~g~~v--pd------~~i~ 128 (238)
..++|+|||||||||+++.|+..++.. .+.....-+.....+..+ .+.+.....++... .. .+-.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 468999999999999999999987642 111111111111111100 12333333343221 00 0111
Q ss_pred HHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 129 ~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.+...+.. +..+|+||... ....+.+...-..+|+|+++.+++.+|+..|.
T Consensus 82 -~i~~~~~~-----g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 82 -EIDQWLEA-----GDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred -HHHHHHhc-----CCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 12233332 35688998732 22233333334579999999999999999885
No 98
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=1e-08 Score=81.07 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=75.2
Q ss_pred EcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHH---HHHHHHHHHHcccccCCce
Q 026464 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV---IFALLSKRLEEGYYRGESG 145 (238)
Q Consensus 69 ~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~---i~~ll~~~l~~~~~~~~~g 145 (238)
+|..||||||+++.||+++|..+|.-|+|...+ .|.+ |.+|..+.|+. +++.+..++.+.... +..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a---------Ni~K-M~~GiPL~DdDR~pWL~~l~~~~~~~~~~-~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA---------NIEK-MSAGIPLNDDDRWPWLEALGDAAASLAQK-NKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHH---------HHHH-HhCCCCCCcchhhHHHHHHHHHHHHhhcC-CCc
Confidence 489999999999999999999999999887642 3333 78899988875 344445555443222 333
Q ss_pred EEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 146 ~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.||-.-..-....+.|.....--.+|+|+.+.+.+.+|+..|.-
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~g 113 (161)
T COG3265 70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKG 113 (161)
T ss_pred eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhccc
Confidence 44433322233333443333234689999999999999999973
No 99
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.90 E-value=3.1e-09 Score=87.82 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh-----HHH----------
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-----DVI---------- 127 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd-----~~i---------- 127 (238)
+..+-++|+.||||||+++.+- .+|++.|+.|.+.|+.+.++++-+..+.+.+....+.++ +.+
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 3578899999999999999986 999999999999999999999988888877644333332 111
Q ss_pred ----HHHH----HHHH----HcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 128 ----FALL----SKRL----EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 128 ----~~ll----~~~l----~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++ ...+ ......+..-+|+| .|.-.+- . +. .....+|...||.++-++|+..|.
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~-~-~~--~~~~~tvvV~cd~~~Ql~Rl~~Rd 147 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA-K-LL--KICHKTVVVTCDEELQLERLVERD 147 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH-h-HH--hheeeEEEEEECcHHHHHHHHHhc
Confidence 1111 1111 11111223334444 4433222 1 11 234568999999999999999987
No 100
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.89 E-value=2.5e-08 Score=82.27 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHc---cc--
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE---GY-- 139 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~---~~-- 139 (238)
.|+|.|++||||||+++.|++.+|+.++.-.. .. ......+ ++....+..........-++..+.+. ..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~--~~-~~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV--EP-DVEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccc--cc-cCCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999988875542211 00 0001111 12222111001111111112122211 00
Q ss_pred ccCCceEEEcCCcCCHH--------H-------HH----HHHh----hcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPRTRI--------Q-------AE----ILDQ----IVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~--------q-------a~----~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
...+..+|+|.+|.+.. + .+ .+.. ...||++|+|+++++++.+|+.+|+.
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r 147 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR 147 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence 12357799998875421 1 11 1111 13699999999999999999998864
No 101
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.88 E-value=4.7e-08 Score=80.27 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=73.8
Q ss_pred EEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHH--------HHHHHHccc
Q 026464 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--------LSKRLEEGY 139 (238)
Q Consensus 68 l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~l--------l~~~l~~~~ 139 (238)
|-|..||||||+++.|++.+.-..+.+ +...-...++.|+.+++++..+.........-+ +...+...
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~- 76 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPA- 76 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 579999999999999999985444431 112224568899999999884444444322111 11111111
Q ss_pred ccCCceEEEcCCcC------------CHHHHHHHH-hhc--CCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPR------------TRIQAEILD-QIV--DVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPr------------t~~qa~~l~-~~~--~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
...+..+|+|-|.. .......+. ... .||++|+|++++++..+|+..|..
T Consensus 77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 12356788885421 123333332 223 899999999999999999999874
No 102
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.87 E-value=4.3e-08 Score=81.15 Aligned_cols=135 Identities=11% Similarity=0.101 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCCh--------HHHHHHHHHHcCCCCChH-------
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPED------- 125 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~--------~g~~i~~~l~~g~~vpd~------- 125 (238)
.+++.|+|+||+||||+|+++.|.+++.-.++++...-|.. .++.. --+++.+.+.+|..+.-.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 36788999999999999999999988743344443333321 11100 114566667777654321
Q ss_pred -HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCC--EEEEEecC-HHHHHHHHhcCCCCCCCccccccCC
Q 026464 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD--LVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGG 201 (238)
Q Consensus 126 -~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d--~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~ 201 (238)
+-.+-+...+++ +..+|+|.-+....+.. .. .++ .+|++..| .+++.+|+..|+.
T Consensus 81 Gt~~~~i~~~~~~-----g~~~i~d~~~~g~~~l~---~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~------------ 139 (186)
T PRK14737 81 GTPKAFIEDAFKE-----GRSAIMDIDVQGAKIIK---EK-FPERIVTIFIEPPSEEEWEERLIHRGT------------ 139 (186)
T ss_pred cCcHHHHHHHHHc-----CCeEEEEcCHHHHHHHH---Hh-CCCCeEEEEEECCCHHHHHHHHHhcCC------------
Confidence 112234444443 46688886555544443 32 233 57888885 5899999998862
Q ss_pred CCCCCCCcHHHHHHHHHHHHHH
Q 026464 202 ARFSAADAASAWKEKFRIYAEQ 223 (238)
Q Consensus 202 ~~~~~dd~~e~v~~Rl~~y~~~ 223 (238)
++++.+++||+....+
T Consensus 140 ------~s~e~i~~Rl~~~~~e 155 (186)
T PRK14737 140 ------DSEESIEKRIENGIIE 155 (186)
T ss_pred ------CCHHHHHHHHHHHHHH
Confidence 3567899999875543
No 103
>PRK07933 thymidylate kinase; Validated
Probab=98.86 E-value=2e-08 Score=84.87 Aligned_cols=116 Identities=18% Similarity=0.130 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC---CCeechhhhHHhhcCCCChHHHHHHHHHHcC--CCCChHHHHH---------
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVPEDVIFA--------- 129 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~s~~g~~i~~~l~~g--~~vpd~~i~~--------- 129 (238)
+.|+|.|+.||||||+++.|++.+. ..++-+ ++....+++.|+.+++.+... ....+.....
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 3689999999999999999999984 333211 111112355666677766532 1111111111
Q ss_pred ---HHHHHHHcccccCCceEEEcCCcCCH--HHH------------HHHHhh-------cCCCEEEEEecCHHHHHHHHh
Q 026464 130 ---LLSKRLEEGYYRGESGFILDGIPRTR--IQA------------EILDQI-------VDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 130 ---ll~~~l~~~~~~~~~g~IlDGfPrt~--~qa------------~~l~~~-------~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
.+...++ .+..+|.|.|..+. .|. +++..+ ..||++|+|++|+++..+|+.
T Consensus 77 ~~~~I~p~l~-----~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~ 151 (213)
T PRK07933 77 ARDELAGLLA-----AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR 151 (213)
T ss_pred hHHHHHHHHh-----CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence 1222222 24568889875432 222 122211 259999999999999999999
Q ss_pred cCC
Q 026464 186 ESE 188 (238)
Q Consensus 186 ~R~ 188 (238)
+|+
T Consensus 152 ~R~ 154 (213)
T PRK07933 152 RRA 154 (213)
T ss_pred hhc
Confidence 886
No 104
>PRK07667 uridine kinase; Provisional
Probab=98.86 E-value=8.7e-09 Score=85.59 Aligned_cols=122 Identities=8% Similarity=0.020 Sum_probs=68.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcC----CCCh-------------HHHHHHHHHHcC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELS----PRSA-------------LYKQIANAVNEG 119 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~----~~s~-------------~g~~i~~~l~~g 119 (238)
...+|.|.|+|||||||+|+.|++.++ +..++.++++..... ...+ +...+-..+.+|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 448999999999999999999999873 458899987764321 0000 011111112222
Q ss_pred CCCChHHHHHHHHHHHHcc-cccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 120 KLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 120 ~~vpd~~i~~ll~~~l~~~-~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+.+.--.+-.......... ......-+|+||.-.... . +. ...|.+|++++|+++.++|+..|.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~--~-~~--~~~d~~v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRK--E-WR--DFFHYMVYLDCPRETRFLRESEET 160 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhhhh--h-HH--hhceEEEEEECCHHHHHHHHhccc
Confidence 2110000000000000000 011235678888753211 1 11 146999999999999999998864
No 105
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.84 E-value=1e-07 Score=79.67 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
.+.|+|.|+-|+||||+++.||+++|..++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence 5679999999999999999999999977663
No 106
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.84 E-value=1.1e-08 Score=85.66 Aligned_cols=126 Identities=18% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeechhhhHHhhcCC------C----Ch---HHHHHHHH---HHcCC
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSP------R----SA---LYKQIANA---VNEGK 120 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~------~----s~---~g~~i~~~---l~~g~ 120 (238)
|.++..|.|.|++||||||+++.|+..++ +.+++.++.+...... . .+ -...+.+. +.+|.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 45788999999999999999999999875 5677777654321000 0 00 00001111 12222
Q ss_pred CCChHHHHHHHHHHHHc-ccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 121 LVPEDVIFALLSKRLEE-GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 121 ~vpd~~i~~ll~~~l~~-~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+.-.........+..+ .......-+|+||++..... .+. ...|.+|++++|.++.+.|+..|..
T Consensus 83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~--~~~d~~I~v~~~~~~~l~R~~~R~~ 148 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR--DLMDLKIFVDTPLDIRLIRRIERDI 148 (207)
T ss_pred CEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH--HhCCEEEEEECChhHHHHHHHHHHH
Confidence 11100000000000000 00112467899998664321 122 2468999999999999999988753
No 107
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.84 E-value=1.1e-08 Score=84.79 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCC----------CCh-------HHHHHHHHHHcCCCCChHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSP----------RSA-------LYKQIANAVNEGKLVPEDV 126 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~----------~s~-------~g~~i~~~l~~g~~vpd~~ 126 (238)
+|.|.|+|||||||+|+.|++.+ ++.+|+++++....... ..+ +-+.+.. +.+|..++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~-l~~~~~~~~~~ 79 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDY-WRETGHFPKFL 79 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHH-HHcCCCccCcc
Confidence 37889999999999999999999 79999999987643210 000 1111111 22333221100
Q ss_pred -----------------HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 127 -----------------IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 127 -----------------i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
........... .....-+|+||+-.-. .+.+. ...|++|++++|.++.++|...|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iViVEG~~l~~--~~~l~--~l~D~~Ifvd~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 80 RSHGNENDPEKEFIEDAQIEETKADLLG--AEDLHILIVDGFLLYN--YKPLV--DLFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred cCccccccccccccchhhhhhccccccc--cCCCcEEEEechHhcC--CHHHH--hhcCceeEecCCHHHHHHHHHHcCC
Confidence 00000000100 1234568999973211 11222 2569999999999999999999964
Q ss_pred CC
Q 026464 190 FS 191 (238)
Q Consensus 190 ~~ 191 (238)
..
T Consensus 154 ~~ 155 (187)
T cd02024 154 YV 155 (187)
T ss_pred cc
Confidence 33
No 108
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.83 E-value=2.4e-08 Score=80.80 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=64.0
Q ss_pred EcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChH---HHHHHHHHHHHcccccCCce
Q 026464 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFALLSKRLEEGYYRGESG 145 (238)
Q Consensus 69 ~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~---~i~~ll~~~l~~~~~~~~~g 145 (238)
+|+|||||||+++.|++.+|..+++.+.+.... .+.. +..|....++ .....+..............
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchh---------hhcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 599999999999999999999999886542111 0000 1122222111 11111111111100012344
Q ss_pred EEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 146 ~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+|+-.+. ...+.+.+.+...+..+|+|+||++++.+|+..|..
T Consensus 71 viv~s~~-~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~ 113 (163)
T PRK11545 71 LIVCSAL-KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKG 113 (163)
T ss_pred EEEEecc-hHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccC
Confidence 5554443 334444455555667899999999999999999974
No 109
>PRK06696 uridine kinase; Validated
Probab=98.81 E-value=8.6e-09 Score=87.43 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=68.0
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eechhhhHHhhcC-----CCCh------------HHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELS-----PRSA------------LYKQIANAVN 117 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~---g~~--~is~~dllr~~~~-----~~s~------------~g~~i~~~l~ 117 (238)
+.++.+|.|.|++||||||+|+.|++.+ |.+ ++++|++...... ...+ +.+.+...+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 3578999999999999999999999998 554 4558877643210 0011 1111111111
Q ss_pred cCCC--CC----hHHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 118 EGKL--VP----EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 118 ~g~~--vp----d~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+.. +. +............ .......+|+||.-.. . ..+. ...|.+|++++|.++..+|+..|..
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~vviveg~~l~-~--~~~~--~~~d~~i~v~~~~e~~~~R~~~Rd~ 169 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPL--LAAPNAVLIVDGTFLL-R--PELR--DLWDYKIFLDTDFEVSRRRGAKRDT 169 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCce--ecCCCCEEEEecHHHh-h--hhHH--hhCCEEEEEECCHHHHHHHHHHhhh
Confidence 1111 11 1000000000000 0122346778885321 1 1111 2458999999999999999998863
No 110
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.80 E-value=6.2e-08 Score=91.72 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=76.5
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
+.++..|+++|+|||||||+|+.+++..|+.+|+.|++-. . +.....+...|..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~------------~~~~~~a~~~L~~-- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------T------------QNCLTACERALDQ-- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------H------------HHHHHHHHHHHhC--
Confidence 4578899999999999999999999999999999976511 0 1123345555654
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+..+|+|..-.+..+...+.++ +.+-.++++++|.+++++|+..|..
T Consensus 420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 4679999877776665555433 3456789999999999999998865
No 111
>PRK12338 hypothetical protein; Provisional
Probab=98.79 E-value=1e-07 Score=84.92 Aligned_cols=126 Identities=12% Similarity=0.169 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCC-----hH-HHH---HHHHHHcCCC-CC-hHHH---
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS-----AL-YKQ---IANAVNEGKL-VP-EDVI--- 127 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s-----~~-g~~---i~~~l~~g~~-vp-d~~i--- 127 (238)
+|..|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+.... +. ... .-+.+..... .+ ++.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g 82 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG 82 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence 568899999999999999999999999999988888988655310 10 111 0011111111 11 1111
Q ss_pred ----HHHHHHH----HHcccccCCceEEEcCCcCCHHHHH--HHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 128 ----FALLSKR----LEEGYYRGESGFILDGIPRTRIQAE--ILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 128 ----~~ll~~~----l~~~~~~~~~g~IlDGfPrt~~qa~--~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+++... +... ...+..+|++|.--.-.-.. .+... ..-.+++|..+++.-++|+..|..
T Consensus 83 f~~q~~~V~~~i~~vi~r~-~~~g~svIiEGvhl~P~~i~~~~~~~~-~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 83 FEEHASFVIPAIEKVIERA-VTDSDDIVIEGVHLVPGLIDIEQFEEN-ASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEEeccccHHHHhhhhhccc-CceEEEEEECCHHHHHHHHHHhhh
Confidence 2222222 2221 13467899999733322222 11121 223456666888999999999875
No 112
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.79 E-value=1.8e-07 Score=75.44 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=70.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHH---HHHHHcc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL---SKRLEEG 138 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll---~~~l~~~ 138 (238)
+++++++|-||+||||+++.+.+.+ +...++-|+++-+......- -+.++.+. -+|.+....+- .+++.+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~gl--ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGL--VEHRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCC--cccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 88889999987653221100 01111122 24555444443 3334332
Q ss_pred cccCCceEEEcCCcCCH-------HHHHHHHhhcCCCEEEEEecCHHHHHHHHhc
Q 026464 139 YYRGESGFILDGIPRTR-------IQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~-------~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (238)
...+|+|+.-... .--.+.-+...||.+|.|+.+++.++.|-..
T Consensus 79 ----~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 79 ----ALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred ----hhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhc
Confidence 1227788431100 0011222346899999999999888877654
No 113
>COG0645 Predicted kinase [General function prediction only]
Probab=98.76 E-value=2.5e-07 Score=74.75 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh---HHHHHHHHHHHHcccc
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DVIFALLSKRLEEGYY 140 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd---~~i~~ll~~~l~~~~~ 140 (238)
..+++.|.|||||||+|+.|++.+|..+|..|+ +++.+...... . -...|..-|. .+...+......-.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~-irk~L~g~p~~-~----r~~~g~ys~~~~~~vy~~l~~~A~l~l-- 73 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV-IRKRLFGVPEE-T----RGPAGLYSPAATAAVYDELLGRAELLL-- 73 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHH-HHHHhcCCccc-c----cCCCCCCcHHHHHHHHHHHHHHHHHHH--
Confidence 457899999999999999999999999999955 56555541100 0 0001111111 11111221111111
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..+..+|+|+..-...+.+..... +-+...|.+++|.+++.+|+..|.-
T Consensus 74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 235789999876665555555433 3345679999999999999999985
No 114
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.76 E-value=1.4e-07 Score=76.77 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh---HHHH--HHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DVIF--ALL 131 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd---~~i~--~ll 131 (238)
++..|+|+|+|||||||+++.|+..+. +.+++.+.+ ++.+..... ..++ ..+. ..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~-------------~~~~~r~~~~~~~~~~ 68 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLG-------------FSKEDRDTNIRRIGFV 68 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCC-------------CChhhHHHHHHHHHHH
Confidence 567899999999999999999999883 566776543 433221100 0010 0111 112
Q ss_pred HHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHH
Q 026464 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
...+.. .+..+|+|+.-......+.+......-.+|+|++|.+++.+|.
T Consensus 69 a~~~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 69 ANLLTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHHHHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence 222221 2345677765223344444544444457999999999999995
No 115
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.71 E-value=1.1e-07 Score=80.49 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (238)
++.|.|.||+||||||+++.|++++|+++++.|++.|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 468999999999999999999999999999999987654
No 116
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.69 E-value=2.6e-07 Score=73.64 Aligned_cols=103 Identities=21% Similarity=0.141 Sum_probs=60.9
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCC--eechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh---HHHHHHH--HHHH
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DVIFALL--SKRL 135 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~---g~~--~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd---~~i~~ll--~~~l 135 (238)
++|.|.|||||||+++.|++.+ |.. +++. |-+++.+.... ..-++ +.+..+. ...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~-------------~~~~~~~~~~~~~~~~~a~~l 67 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDL-------------GFSREDREENIRRIAEVAKLL 67 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhcc-------------CCCcchHHHHHHHHHHHHHHH
Confidence 7899999999999999999998 543 3443 44444322110 00011 1111111 1122
Q ss_pred HcccccCCceEEEcCCcCCHHHHHHHHhhc--CCCEEEEEecCHHHHHHHHhc
Q 026464 136 EEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLE 186 (238)
Q Consensus 136 ~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~ 186 (238)
.. .+..+|+|..-....+...+.+.. ....+|+|++|.+++.+|-.+
T Consensus 68 ~~----~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 68 AD----AGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred Hh----CCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 21 246788887544444444444443 556799999999999998644
No 117
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.69 E-value=4.3e-07 Score=77.37 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~ 100 (238)
+.+|.|.|+|||||||+++.|+++||+++++.|+++|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 46899999999999999999999999999999998775
No 118
>PRK07429 phosphoribulokinase; Provisional
Probab=98.69 E-value=2.3e-08 Score=89.71 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=33.7
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeechhhhH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV 98 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g---~~~is~~dll 98 (238)
+.++.+|.|.|++||||||+++.|+..++ ...++.+++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 35788999999999999999999999987 5677888764
No 119
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.69 E-value=2.6e-07 Score=83.17 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=72.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC------CCeechhhhHHhhcCC------CChHHHHHHHHH-----------HcCCCC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSP------RSALYKQIANAV-----------NEGKLV 122 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g------~~~is~~dllr~~~~~------~s~~g~~i~~~l-----------~~g~~v 122 (238)
++|+|+|||||||+++.|+..+. +.+++.||++.+.... ....++..++.+ ..|...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~ 81 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSEL 81 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67999999999999999998875 3499999998532221 122223222221 123222
Q ss_pred Ch------HHHH------------------------HHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhh----cCCC
Q 026464 123 PE------DVIF------------------------ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVD 168 (238)
Q Consensus 123 pd------~~i~------------------------~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d 168 (238)
.. .+.. .++...+.. ..-+|+|+-.....+...+... ....
T Consensus 82 ~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~Lsr-----pllvilDd~fy~ks~Ryel~~LAr~~~~~~ 156 (340)
T TIGR03575 82 SAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSR-----PLCLVLDDNFYYQSMRYEVYQLARKYSLGF 156 (340)
T ss_pred cCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhC-----CCCceecCCCCCHHHHHHHHHHHHHhCCCE
Confidence 11 1111 111111111 2347888766555555444332 3456
Q ss_pred EEEEEecCHHHHHHHHhcCCC
Q 026464 169 LVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 169 ~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+|++++|.+++++|..+|..
T Consensus 157 ~~V~ld~ple~~l~RN~~R~~ 177 (340)
T TIGR03575 157 CQLFLDCPVESCLLRNKQRPV 177 (340)
T ss_pred EEEEEeCCHHHHHHHHhcCCC
Confidence 899999999999999999863
No 120
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.67 E-value=2.4e-07 Score=87.51 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (238)
++++|.|.||+||||||+|+.|+++||+.+++.|++.|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 7789999999999999999999999999999999998863
No 121
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.67 E-value=9.3e-08 Score=79.67 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=65.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCC-------hHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP-------EDVIFAL 130 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vp-------d~~i~~l 130 (238)
..|..+++.|+|||||||++..+...+ ++.+|+.|++ +...+.. ..+... ...... ..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p~~----~~~~~~--~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHPDY----DELLKA--DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGSTTH----HHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhccch----hhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 478899999999999999999999987 6788888664 5444321 111110 011110 1133344
Q ss_pred HHHHHHcccccCCceEEEcCCcCCHHHHH-HH---HhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 131 LSKRLEEGYYRGESGFILDGIPRTRIQAE-IL---DQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGfPrt~~qa~-~l---~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+...+.. ...+|+||.-++..... .+ .+.+---.++++.++++..+.|+..|..
T Consensus 86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 4444443 46899999877655554 22 3333334578888999999999988853
No 122
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.64 E-value=1.2e-07 Score=79.88 Aligned_cols=124 Identities=22% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC---eechhhhHHhhcCC----------CCh-------HHHHHHHHHHcCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSP----------RSA-------LYKQIANAVNEGK 120 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~---~is~~dllr~~~~~----------~s~-------~g~~i~~~l~~g~ 120 (238)
.++..|.|.|++||||||+|+.|++.++.. .|+.|+.....-.. .++ +.+.+.. +.+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence 466899999999999999999999999865 66767665522110 001 1122222 34444
Q ss_pred CCChHHHHHHHHHHH-HcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 121 LVPEDVIFALLSKRL-EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 121 ~vpd~~i~~ll~~~l-~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+..-+.--.-..+. .........-+||+|+---.. +.+.. ..|+-|+++++.++.+.|...|..
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~RliRri~RD~ 150 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHHHHHHHHHHH
Confidence 332111000000111 010112457789999743222 12221 458999999999998888877764
No 123
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.64 E-value=6.2e-07 Score=74.87 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC---CCeechhh-hHHhhcCC-CChHHHHHH-HHHHcCCCCChHHHHHHHHHHHHc
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGS-LVRQELSP-RSALYKQIA-NAVNEGKLVPEDVIFALLSKRLEE 137 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g---~~~is~~d-llr~~~~~-~s~~g~~i~-~~l~~g~~vpd~~i~~ll~~~l~~ 137 (238)
+.|++.|+|||||||.|+.|++.+. ...++.+. .++-.... .-+..++.. +... +-...++..+++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc-
Confidence 5688999999999999999999883 33332221 22211111 111222111 1111 111223333333
Q ss_pred ccccCCceEEEcCCc--CC-HHHHHHH-HhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 138 GYYRGESGFILDGIP--RT-RIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 138 ~~~~~~~g~IlDGfP--rt-~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+.-+|+|..- .. ..|.-.. .+....-.||++.||.+++++|-..|+.
T Consensus 74 -----n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge 124 (261)
T COG4088 74 -----NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE 124 (261)
T ss_pred -----ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC
Confidence 3556777531 11 2333222 2334667899999999999999877763
No 124
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.62 E-value=9.9e-07 Score=73.99 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~ 100 (238)
.++|.|=||.||||||+|+.||++||+.|+++|-+.|.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa 41 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRA 41 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHH
Confidence 37899999999999999999999999999999998885
No 125
>PHA03132 thymidine kinase; Provisional
Probab=98.61 E-value=1.5e-06 Score=82.93 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC---CCChHHHHH---------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK---LVPEDVIFA--------- 129 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~---~vpd~~i~~--------- 129 (238)
++..|+|.|..||||||+++.|++.+|..++-+.+=......-.+..++.+.+.+.++. .-+...+..
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 47889999999999999999999998655443322111100001356777777776543 222222210
Q ss_pred -HHHHHHH------cc---cccCCceEEEcCCcCCH-H-H---------------HHHHHhh--cCCCEEEEEecCHHHH
Q 026464 130 -LLSKRLE------EG---YYRGESGFILDGIPRTR-I-Q---------------AEILDQI--VDVDLVINFKSIEDQL 180 (238)
Q Consensus 130 -ll~~~l~------~~---~~~~~~g~IlDGfPrt~-~-q---------------a~~l~~~--~~~d~vI~L~~~~e~l 180 (238)
.+..+++ .. ....+..+|.|-++... . + ...+... ..||++|+|+++.++.
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 1111111 10 11234577888776332 1 1 1111221 2589999999999999
Q ss_pred HHHHhcCCC
Q 026464 181 VKRNLESEA 189 (238)
Q Consensus 181 ~~Rl~~R~~ 189 (238)
.+|+.+|+.
T Consensus 416 lkRIkkRgR 424 (580)
T PHA03132 416 LRRVKKRGR 424 (580)
T ss_pred HHHHHhcCc
Confidence 999999863
No 126
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.60 E-value=2.4e-07 Score=78.90 Aligned_cols=118 Identities=22% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC-----Ce-echhhhHHhhcCCCChHHHHHHHHHHcCCCCCh----HHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-----PH-ISMGSLVRQELSPRSALYKQIANAVNEGKLVPE----DVIFAL 130 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~-----~~-is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd----~~i~~l 130 (238)
.++..+.|.|++||||||+++.|+..+.- .. ++++++..... ... . ...+.. .-.|+ +...++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~----~~~-~-~g~~~~-~~~~~~~d~~~~~~~ 103 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNA----VLD-A-HGLRPR-KGAPETFDVAGLAAL 103 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHH----HHH-h-cccccc-cCCCCCCCHHHHHHH
Confidence 57889999999999999999999988742 12 66655432110 000 0 000000 00111 111122
Q ss_pred HHHHHHcc---------------------cc-cCCceEEEcCCcCCHHH--HHHHHhhcCCCEEEEEecCHHHHHHHHhc
Q 026464 131 LSKRLEEG---------------------YY-RGESGFILDGIPRTRIQ--AEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (238)
Q Consensus 131 l~~~l~~~---------------------~~-~~~~g~IlDGfPrt~~q--a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (238)
+.. +..+ .. ....-+|+||....... ...+. ...|.+|++++|.++.++|+..
T Consensus 104 l~~-l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~--~~~D~vi~v~~~~~~~~~R~~~ 180 (229)
T PRK09270 104 LRR-LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLA--GLFDFTIFLDAPAEVLRERLVA 180 (229)
T ss_pred HHH-HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHH--hhCCEEEEEECCHHHHHHHHHH
Confidence 111 1100 00 12346788997654321 11122 2458999999999999999998
Q ss_pred CC
Q 026464 187 SE 188 (238)
Q Consensus 187 R~ 188 (238)
|.
T Consensus 181 R~ 182 (229)
T PRK09270 181 RK 182 (229)
T ss_pred HH
Confidence 85
No 127
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.60 E-value=1.1e-07 Score=65.95 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=43.7
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
|+|.|+|||||||+++.|++.+ ++.+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~------------------------------------------------ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE------------------------------------------------ 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE------------------------------------------------
Confidence 7889999999999999999986 2222211
Q ss_pred CceEEEcCCcCCHHHHHHHHhhcCCCEEEEEec
Q 026464 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKS 175 (238)
Q Consensus 143 ~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~ 175 (238)
.+|+||+.....+.+ ......+|+.|++++
T Consensus 34 --~~I~eg~~~~~~~~~-~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 --IVILEGLYASYKSRD-ARIRDLADLKIYLDA 63 (69)
T ss_pred --EEEecchhhhhhhHH-hhccccccEEEEEEe
Confidence 799999987766543 122246789999987
No 128
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.58 E-value=1e-06 Score=72.34 Aligned_cols=104 Identities=22% Similarity=0.187 Sum_probs=64.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChH----HHHHH-
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED----VIFAL- 130 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~----~i~~l- 130 (238)
.++..|+|.|+|||||||+++.|+..+ | ..+++.+ -+++.+.. +....++ .+..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~--------------~~~~~~~~~~~~~~~~~ 80 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNK--------------DLGFSEEDRKENIRRIG 80 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhcc--------------ccCCCHHHHHHHHHHHH
Confidence 467899999999999999999999887 3 3455543 34433221 1111111 11111
Q ss_pred -HHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhc--CCCEEEEEecCHHHHHHH
Q 026464 131 -LSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKR 183 (238)
Q Consensus 131 -l~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~~~~e~l~~R 183 (238)
+...+. ..+..+|+|..-....+.+.+.... .+..+|+|++|.+++.+|
T Consensus 81 ~~~~~~~----~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 81 EVAKLFV----RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHHHH----cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 111122 2357788887644455556665443 245789999999999999
No 129
>PTZ00301 uridine kinase; Provisional
Probab=98.58 E-value=1.6e-07 Score=79.29 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh----C---CCeechhhhHHhhcCC----------CCh-------HHHHHHHHHHcC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL----E---VPHISMGSLVRQELSP----------RSA-------LYKQIANAVNEG 119 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~----g---~~~is~~dllr~~~~~----------~s~-------~g~~i~~~l~~g 119 (238)
..|.|.|+|||||||+|+.|++++ | +..+++|+..+..... ..+ +-+.+ ..+.+|
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~~g 82 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELKSG 82 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHHcC
Confidence 679999999999999999998876 2 2366777766542110 000 11112 122333
Q ss_pred CCCChHHHHHHHHHHHHc-ccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 120 KLVPEDVIFALLSKRLEE-GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 120 ~~vpd~~i~~ll~~~l~~-~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+.+.--...-....+... .......-+|++|+---.. ..+.. ..|+.|++++|.++.+.|...|..
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~--l~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN--EMDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH--hCCEEEEEeCChhHHHHHHHhhhH
Confidence 221100000000000000 0012345677799754111 12222 458899999999999999998875
No 130
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.57 E-value=1.7e-06 Score=75.05 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeec---hhhhHHhhcCC-CChHH---------HHHHHHHHc-CCCCChHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS---MGSLVRQELSP-RSALY---------KQIANAVNE-GKLVPEDV 126 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is---~~dllr~~~~~-~s~~g---------~~i~~~l~~-g~~vpd~~ 126 (238)
.+...|++-|+.|||||++|+.||+++|+.|+- +|++.-..... ...+. -.++..-.. ..-+...+
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 356789999999999999999999999987774 54443221110 00000 001111000 00011111
Q ss_pred H-----------HHHHHHHHHcccccCCceEEEcCCcCC-HHHHHHHH----------------------hhcCCCEEEE
Q 026464 127 I-----------FALLSKRLEEGYYRGESGFILDGIPRT-RIQAEILD----------------------QIVDVDLVIN 172 (238)
Q Consensus 127 i-----------~~ll~~~l~~~~~~~~~g~IlDGfPrt-~~qa~~l~----------------------~~~~~d~vI~ 172 (238)
. ...+...| ..++|+||+-.|.+ .--++.+. +...|.+||+
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL-----~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViY 223 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHIL-----NTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIY 223 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHH-----hcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEE
Confidence 1 11222222 24689999987754 22333332 1237999999
Q ss_pred EecCHHHHHHHHhcCCC
Q 026464 173 FKSIEDQLVKRNLESEA 189 (238)
Q Consensus 173 L~~~~e~l~~Rl~~R~~ 189 (238)
|++|.+.+.++++.|+.
T Consensus 224 ld~Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 224 LDTPVNKVLENIKRRGN 240 (393)
T ss_pred EcCCcHHHHHHHHhcCC
Confidence 99999999999999884
No 131
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.57 E-value=3.1e-07 Score=76.17 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVR 99 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr 99 (238)
.|.|.|++||||||+++.|+..+ ++.+++++++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 37899999999999999999987 467888887664
No 132
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.57 E-value=1.6e-06 Score=70.96 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHH-----------H
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-----------A 129 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~-----------~ 129 (238)
.++..|++-|--+|||||+|..|.+.+. +.... ..+..--...+..|+.|..|+.+...+||.++. .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4788999999999999999999998883 22222 223333445688999999999999889987653 3
Q ss_pred HHHHHHHcccccCCceEEEcCCcCC---HHHHHHHH-h--------hcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 130 LLSKRLEEGYYRGESGFILDGIPRT---RIQAEILD-Q--------IVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDGfPrt---~~qa~~l~-~--------~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
++.+.+.+ +..+|+|-|-.+ ..-|+.++ + +..||+|++|+++++.+ .|..+++
T Consensus 81 ~i~e~l~k-----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~-a~rggfG 145 (208)
T KOG3327|consen 81 LIKEKLAK-----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDA-ARRGGFG 145 (208)
T ss_pred HHHHHHhc-----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHH-HHhcCcc
Confidence 44555543 466899976432 22233332 1 13799999999999995 5555554
No 133
>PHA00729 NTP-binding motif containing protein
Probab=98.53 E-value=5.6e-07 Score=76.49 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=62.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC--CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g--~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
...|+|+|+||+||||+|..|+++++ +..++.++..+.... ....++-+-+...+.......
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~--------------~~~fid~~~Ll~~L~~a~~~~-- 80 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQ--------------NSYFFELPDALEKIQDAIDND-- 80 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCC--------------cEEEEEHHHHHHHHHHHHhcC--
Confidence 35799999999999999999999875 222322221111100 011122233334444333221
Q ss_pred cCCceEEEcCCcCCHH---HH-------HHHHhh--cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 141 RGESGFILDGIPRTRI---QA-------EILDQI--VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~---qa-------~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
....-+|||++---.. +- -.+.+. ...++++++.++++.+.+++..|+.
T Consensus 81 ~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 81 YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 1123469998321111 01 012122 2478899999999999999999875
No 134
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.52 E-value=5.7e-07 Score=88.56 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (238)
.+|.|.|||||||||+|+.||+++|+.++++|.+.|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 47899999999999999999999999999999998863
No 135
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.52 E-value=1.9e-06 Score=76.17 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCC------hHHHHHHHHHH--cCCCCChH-H------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS------ALYKQIANAVN--EGKLVPED-V------ 126 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s------~~g~~i~~~l~--~g~~vpd~-~------ 126 (238)
+|+.|+|.|++||||||+|..||++||.+++-..|.+|+.+.... .+.......+. .+..-+++ .
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~ 170 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFER 170 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHH
Confidence 678999999999999999999999999985433566664433100 01111111111 01111222 1
Q ss_pred --------HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEec-CHHHHHHHHhcCCC
Q 026464 127 --------IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEA 189 (238)
Q Consensus 127 --------i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~ 189 (238)
+.+++...+. .+...|+.|.--.....+.+.....-...+++.+ +++...+|...|..
T Consensus 171 ~~~~v~~gi~~~I~~~~~-----~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~ 237 (301)
T PRK04220 171 HVEPVSVGVEAVIERALK-----EGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARAR 237 (301)
T ss_pred HHHHHHHHHHHHHHHHHH-----hCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHh
Confidence 1223333333 3578999998766655544322222223455554 56899999988765
No 136
>PLN02348 phosphoribulokinase
Probab=98.52 E-value=5.1e-08 Score=88.82 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++..|.|.|++||||||+++.|++.++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5778999999999999999999999986
No 137
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.51 E-value=1.8e-06 Score=75.53 Aligned_cols=110 Identities=23% Similarity=0.148 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHhhcC-CCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHc
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~-~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~ 137 (238)
..|+|+|.|||||||+|+.|++.+ .+.+++-+++.-.... ..+...+.++. .+...+.+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls~ 70 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALSK 70 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHTT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhcc
Confidence 578899999999999999999975 3455664444311100 01111122222 122334444432
Q ss_pred ccccCCceEEEcCCcCCH---HHHHHHH-hhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 138 GYYRGESGFILDGIPRTR---IQAEILD-QIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 138 ~~~~~~~g~IlDGfPrt~---~qa~~l~-~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..-+|+|+--.-. .+.-.+. .......+|+++|+.+.+++|-.+|..
T Consensus 71 -----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 71 -----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp ------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred -----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence 4778999854332 3333332 234567899999999999999998874
No 138
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.51 E-value=1e-06 Score=70.86 Aligned_cols=105 Identities=20% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---CC--CeechhhhHHhhcCCC---ChHH--HHHHHHHHcCCCCChHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPR---SALY--KQIANAVNEGKLVPEDVIFALL 131 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~---g~--~~is~~dllr~~~~~~---s~~g--~~i~~~l~~g~~vpd~~i~~ll 131 (238)
+|..|.|+|.|||||||+|+.|.+++ |. .+++. |.+|..+... +.-. +.++. ..-+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~rr-------------~~~~ 66 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIRR-------------IAEV 66 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHHH-------------HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHHH-------------HHHH
Confidence 46789999999999999999999998 33 34444 5566555432 1111 11111 1112
Q ss_pred HHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcC--CCEEEEEecCHHHHHHHH
Q 026464 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl 184 (238)
...+.. .+..+|++..--.....+...+... ..+-|+++||.+++.+|=
T Consensus 67 A~ll~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 67 AKLLAD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHHHHH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HHHHHh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 233332 2455666654333333333333322 467999999999999994
No 139
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.51 E-value=1.1e-06 Score=74.64 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcCC---------CChHHHHHHHHHHcCCCCChHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSP---------RSALYKQIANAVNEGKLVPEDV 126 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~---------~s~~g~~i~~~l~~g~~vpd~~ 126 (238)
..++.|+++|.|+.|||++|+.|+..++ ..++++|+.=|+.... ....+..+++.+.. ..
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~------~~ 83 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAK------EA 83 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHH------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHH------HH
Confidence 4678999999999999999999998763 3578899887765543 23334444442221 12
Q ss_pred HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCC
Q 026464 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGA 202 (238)
Q Consensus 127 i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~ 202 (238)
+.. +...|++ .+++--|+|+.=.|....+.+.+. .-.-++|..-|+++.++++-........+ .| .
T Consensus 84 l~d-l~~~l~~---~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~sp--DY----~ 153 (222)
T PF01591_consen 84 LED-LIEWLQE---EGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSP--DY----K 153 (222)
T ss_dssp HHH-HHHHHHT---S--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSG--GG----T
T ss_pred HHH-HHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCc--cc----c
Confidence 222 3334553 235678999999998888777443 22234556667777766655443321100 01 1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHH
Q 026464 203 RFSAADAASAWKEKFRIYAEQVRDAT 228 (238)
Q Consensus 203 ~~~~dd~~e~v~~Rl~~y~~~~~~l~ 228 (238)
+...+...+.+.+|++.|...-+|+-
T Consensus 154 ~~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 154 GMDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp TS-HHHHHHHHHHHHHHHHTT-----
T ss_pred cCCHHHHHHHHHHHHHhhcccccccc
Confidence 11223456788999999999998886
No 140
>PRK05439 pantothenate kinase; Provisional
Probab=98.50 E-value=4.7e-07 Score=80.56 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeechhhhHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR 99 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g-------~~~is~~dllr 99 (238)
...+..|.|.|+|||||||+|+.|++.++ +..|++|+++.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 35788999999999999999999998663 45788888764
No 141
>COG4639 Predicted kinase [General function prediction only]
Probab=98.49 E-value=2.5e-06 Score=68.15 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
..++++|+|||||||.++.. ......++++++=+ .+ |+...+...+| .++.+.+++.+.+++.- ..+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~-~l------g~~~~~e~sqk---~~~~~~~~l~~~l~qrl-~~G 69 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRL-LL------GVSASKENSQK---NDELVWDILYKQLEQRL-RRG 69 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHH-Hh------hhchhhhhccc---cHHHHHHHHHHHHHHHH-HcC
Confidence 46899999999999999753 34678888877533 22 11111112222 23444554444443322 225
Q ss_pred ceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcC
Q 026464 144 SGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
...|+|..-...++...+... +....+|+++.|.+.+.+|.+.|
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 778999876555555554332 44567899999999999997644
No 142
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.48 E-value=1.1e-06 Score=84.19 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHhCC------CeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHH-
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEV------PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL- 130 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~------~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~l- 130 (238)
....++..|+|+|+|||||||+++.|++.++. .+++.+ .+++.+.....+...-+. ..+..+
T Consensus 387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~----------~~~~~l~ 455 (568)
T PRK05537 387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRD----------LNILRIG 455 (568)
T ss_pred cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHH----------HHHHHHH
Confidence 33456778999999999999999999999985 677664 556655422111000000 011111
Q ss_pred -HHHHHHcccccCCceEEEcC-CcCCHHH--H-HHHHhhcCCCEEEEEecCHHHHHHHHh
Q 026464 131 -LSKRLEEGYYRGESGFILDG-IPRTRIQ--A-EILDQIVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 131 -l~~~l~~~~~~~~~g~IlDG-fPrt~~q--a-~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
+...+. ..+.++|+|. +|..... . +.+.+.+ ...+|+|++|.+++.+|..
T Consensus 456 ~~a~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 456 FVASEIT----KNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHHHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcc
Confidence 111111 2356788884 4544222 1 2222222 2358999999999999974
No 143
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.48 E-value=5.7e-06 Score=76.98 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=34.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~ 102 (238)
.+|..|++.|+||+||||++..||..+|+.++-..|.+|+.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 368999999999999999999999999998664446666543
No 144
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.45 E-value=9.7e-07 Score=72.31 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=65.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCC--eechhhhHHhhcCCCChHHHHHHHHHHcCCCC------C--hH---HHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLV------P--ED---VIFAL 130 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v------p--d~---~i~~l 130 (238)
.+|+|.|+|-|||||+++.|.+.+.-+ |+++|+++.. +.+... ..+.-+ | .. .+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~ 71 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRY---------RPGDGLEPAGDRPDGGPLFRRLYAA 71 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGG---------TSTTSEEEETTSEEE-HHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCcccc---------cCCccccccccCCchhHHHHHHHHH
Confidence 579999999999999999999999654 7788877763 221100 001000 0 01 11222
Q ss_pred HHHHHHcccccCCceEEEcCCcCCHHH-HHHHHhh--cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 131 LSKRLEEGYYRGESGFILDGIPRTRIQ-AEILDQI--VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGfPrt~~q-a~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+...+... ...+..+|+|+...+..+ .+.+.+. ..+-++|-+.||.+++.+|-..|+-
T Consensus 72 ~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 72 MHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp HHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred HHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCC
Confidence 22223221 134688999987666554 4445333 3456899999999999999988763
No 145
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.45 E-value=2.4e-06 Score=71.06 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=60.7
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh---HHHHH
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DVIFA 129 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd---~~i~~ 129 (238)
..+.++..|+|+|++||||||+++.|+..+ | ..+++.+++ ++.+... - ...+. +.+..
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~-~~~~~~~------------~-~~~~~~~~~~~~~ 84 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV-RHGLCSD------------L-GFSDADRKENIRR 84 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH-Hhhhhhc------------C-CcCcccHHHHHHH
Confidence 344578899999999999999999999986 3 345554443 3221110 0 01111 12222
Q ss_pred HH--HHHHHcccccCCceEEEcCCcC-CHHHHHHHHhhc-CCC-EEEEEecCHHHHHHH
Q 026464 130 LL--SKRLEEGYYRGESGFILDGIPR-TRIQAEILDQIV-DVD-LVINFKSIEDQLVKR 183 (238)
Q Consensus 130 ll--~~~l~~~~~~~~~g~IlDGfPr-t~~qa~~l~~~~-~~d-~vI~L~~~~e~l~~R 183 (238)
+. ...+.. ....|+..|.. ...+.+.+.... ... .+|+|++|.+++.+|
T Consensus 85 l~~~a~~~~~-----~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 85 VGEVAKLMVD-----AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHHHHhh-----CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 21 111111 13345555654 234444554432 223 479999999999999
No 146
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.43 E-value=1.3e-06 Score=74.17 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC-------CCeechhhhH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g-------~~~is~~dll 98 (238)
+|.|.|++||||||+|+.|+..+. +.+|++++..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 367899999999999999999883 3567777764
No 147
>PLN02772 guanylate kinase
Probab=98.43 E-value=6e-06 Score=75.42 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcC---CCChH----HHHHHHHHHcCCCCChH--------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELS---PRSAL----YKQIANAVNEGKLVPED-------- 125 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~---~~s~~----g~~i~~~l~~g~~vpd~-------- 125 (238)
....++|+||+||||+|+.++|.+.+.. ..+++...-|..-. .+.++ -+.+.+.+++|..+.-.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 5568999999999999999999987632 22222222221111 01000 13455556666544321
Q ss_pred HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEec--CHHHHHHHHhcCCCCCCCccccccCCCC
Q 026464 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS--IEDQLVKRNLESEAFSPHKEFLRLGGAR 203 (238)
Q Consensus 126 ~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~--~~e~l~~Rl~~R~~~~~~~~~~~~~~~~ 203 (238)
+-.+.+...+++ +...|||=-| .-+..+.+.. ++.++++-+ +.+++.+|+..|+.
T Consensus 214 Tsk~~V~~vl~~-----Gk~vILdLD~---qGar~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGt-------------- 270 (398)
T PLN02772 214 TSIEAVEVVTDS-----GKRCILDIDV---QGARSVRASS-LEAIFIFICPPSMEELEKRLRARGT-------------- 270 (398)
T ss_pred ccHHHHHHHHHh-----CCcEEEeCCH---HHHHHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCC--------------
Confidence 112333444443 3567777433 3334443322 233444444 47999999999873
Q ss_pred CCCCCcHHHHHHHHHHHHHHHH
Q 026464 204 FSAADAASAWKEKFRIYAEQVR 225 (238)
Q Consensus 204 ~~~dd~~e~v~~Rl~~y~~~~~ 225 (238)
++++.+++||+.+..+.+
T Consensus 271 ----eseE~I~kRL~~A~~Ei~ 288 (398)
T PLN02772 271 ----ETEEQIQKRLRNAEAELE 288 (398)
T ss_pred ----CCHHHHHHHHHHHHHHHh
Confidence 356799999999976553
No 148
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.40 E-value=2.2e-06 Score=83.75 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (238)
+.++|.|.||+||||||+++.||++||++|+++|++.|..
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 3568999999999999999999999999999999998864
No 149
>PRK15453 phosphoribulokinase; Provisional
Probab=98.39 E-value=1.5e-06 Score=76.16 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr 99 (238)
.++..|.|.|+|||||||+|+.|++.++ ..+++.|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3667899999999999999999998874 34667766654
No 150
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.38 E-value=1.2e-06 Score=72.59 Aligned_cols=110 Identities=22% Similarity=0.304 Sum_probs=60.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCC---C------eechhhhHHhhcCCCChHHHHHHHHHHcC--C---CCCh----HH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEV---P------HISMGSLVRQELSPRSALYKQIANAVNEG--K---LVPE----DV 126 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~---~------~is~~dllr~~~~~~s~~g~~i~~~l~~g--~---~vpd----~~ 126 (238)
+|.|.|+|||||||+|+.|+..++- + .+++++..... .....-..+ . .-|+ +.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~~p~a~d~~~ 71 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDY---------HLRDRKGRGENRYNFDHPDAFDFDL 71 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHH---------HHHHHHHHCTTTSSTTSGGGBSHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccccccc---------chhhHhhccccccCCCCccccCHHH
Confidence 4889999999999999999999973 2 44455443221 000001111 0 1122 22
Q ss_pred HHHHHHHHHHccc--------------------ccCCceEEEcCCcCC-HHHHHHHHhhcCCCEEEEEecCHHHHHHHHh
Q 026464 127 IFALLSKRLEEGY--------------------YRGESGFILDGIPRT-RIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 127 i~~ll~~~l~~~~--------------------~~~~~g~IlDGfPrt-~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
+.+.+. .|.++. .....-+|++|.--- ... +. ...|+.|+++++.++.+.|..
T Consensus 72 l~~~l~-~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~--~l~D~~ifld~~~~~~l~Rri 145 (194)
T PF00485_consen 72 LKEDLK-ALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LR--DLFDLKIFLDADEDLRLERRI 145 (194)
T ss_dssp HHHHHH-HHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HG--GG-SEEEEEEE-HHHHHHHHH
T ss_pred HHHHHH-HHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ec--ccceeEEEecccHHHHHHHHh
Confidence 333332 232211 123456788885321 111 21 245899999999999888887
Q ss_pred cCCC
Q 026464 186 ESEA 189 (238)
Q Consensus 186 ~R~~ 189 (238)
.|..
T Consensus 146 ~RD~ 149 (194)
T PF00485_consen 146 QRDV 149 (194)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 7754
No 151
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.38 E-value=9.1e-06 Score=71.75 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
.+..|+|.|++||||||+++.|. ..|+..++- +|..++.+++.. ..+....
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~-~~~~~~~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVEL-LAQSGGI 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHH-HHhcCCC
Confidence 45689999999999999999996 557766522 122222233222 1211001
Q ss_pred CCceEEEcCCcCC-----HHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 142 GESGFILDGIPRT-----RIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 142 ~~~g~IlDGfPrt-----~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
..-.+++|-.-.. ......+.+.+....+|+|+++.+++.+|+..+
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence 2245667753221 122233333333346899999999999999753
No 152
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.36 E-value=7.7e-07 Score=73.13 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (238)
.|.|.|+|||||||+|+.|++.+ ++.+|+++++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 37899999999999999999996 4578999998874
No 153
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.32 E-value=3.9e-06 Score=68.88 Aligned_cols=137 Identities=18% Similarity=0.144 Sum_probs=75.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCe----echhhhHHhhcCCCCh----HHHHHHHHHHcCCCCCh--------HH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH----ISMGSLVRQELSPRSA----LYKQIANAVNEGKLVPE--------DV 126 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~----is~~dllr~~~~~~s~----~g~~i~~~l~~g~~vpd--------~~ 126 (238)
+..|+|+||+||||+|+++.|.+.++-.+ -.+.---|..-..+.+ --+.+.+.+.+|..+.- -+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 45688999999999999999999875321 1111111111001110 11345555555544321 01
Q ss_pred HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecC-HHHHHHHHhcCCCCCCCccccccCCCCCC
Q 026464 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (238)
Q Consensus 127 i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (238)
...-+...+.+ +...|||.-| .-+..|.....--.+|++.++ .+.+.+|+..|+
T Consensus 82 ~~~~i~~~~~~-----gk~~il~~~~---~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~----------------- 136 (183)
T PF00625_consen 82 SKSAIDKVLEE-----GKHCILDVDP---EGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRG----------------- 136 (183)
T ss_dssp EHHHHHHHHHT-----TTEEEEEETH---HHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTT-----------------
T ss_pred ccchhhHhhhc-----CCcEEEEccH---HHHHHHHhcccCceEEEEEccchHHHHHHHhccc-----------------
Confidence 22334444443 3557777443 344445444322357777665 577887777665
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 026464 206 AADAASAWKEKFRIYAEQVR 225 (238)
Q Consensus 206 ~dd~~e~v~~Rl~~y~~~~~ 225 (238)
+++.+.+.+|+..+.....
T Consensus 137 -~~~~~~i~~r~~~~~~~~~ 155 (183)
T PF00625_consen 137 -DESEEEIEERLERAEKEFE 155 (183)
T ss_dssp -HCHHHHHHHHHHHHHHHHG
T ss_pred -cccHHHHHHHHHHHHHHHh
Confidence 3456678888887766543
No 154
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.31 E-value=2.3e-06 Score=75.59 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeechhhhHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR 99 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-------~~~is~~dllr 99 (238)
..+.+|.|.|++||||||+++.|+..+. +..+++++...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 4678999999999999999998877663 44567776553
No 155
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.24 E-value=8.7e-06 Score=79.22 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=64.5
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChH----HHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED----VIFAL 130 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~----~i~~l 130 (238)
+.++..|++.|.|||||||+|+.|++++ ++.+++.| .+|+.+..+ ....++ .+..+
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D-~~r~~l~~~--------------~~~~~~~r~~~~~~l 521 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGD-NVRHGLNRD--------------LGFSDADRVENIRRV 521 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcCh-hhhhccCCC--------------CCCCHHHHHHHHHHH
Confidence 3468899999999999999999999997 34566664 455544321 111121 11111
Q ss_pred HH--HHHHcccccCCceEEEcCCcCCHHHHHHHHhhc--CCCEEEEEecCHHHHHHHH
Q 026464 131 LS--KRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 131 l~--~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl 184 (238)
.. ..+. ..+..+|+|..-....+.+.+.+.. ....+|+|++|.+++.+|.
T Consensus 522 ~~~a~~~~----~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 522 AEVARLMA----DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHH----hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 11 1111 1245678876433334444444432 2347999999999999994
No 156
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.21 E-value=3.8e-06 Score=73.58 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVR 99 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr 99 (238)
.|.|.|++||||||+++.|+..+ +...++.+++.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~ 38 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS 38 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc
Confidence 36799999999999999999887 456788877643
No 157
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.18 E-value=2.5e-05 Score=63.82 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh---CCC-eechhhhHHhhcCCC---Ch--HHHHHHHHHHcCCCCChHHHH
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL---EVP-HISMGSLVRQELSPR---SA--LYKQIANAVNEGKLVPEDVIF 128 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~---g~~-~is~~dllr~~~~~~---s~--~g~~i~~~l~~g~~vpd~~i~ 128 (238)
..+.++..|.++|.+||||||+|..|.+++ |.. ++==||-+|.-+... +. ..+.++. +
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRR-------------v 84 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRR-------------V 84 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHH-------------H
Confidence 345678889999999999999999999988 432 222366777665532 11 0011111 2
Q ss_pred HHHHHHHHcccccCCceEEEcCCcCC----HHHHHHHHhhcCCCEEEEEecCHHHHHHHH
Q 026464 129 ALLSKRLEEGYYRGESGFILDGIPRT----RIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 129 ~ll~~~l~~~~~~~~~g~IlDGfPrt----~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
.-+.+.|.. ...++|..|-.- .+++..+-.. ...+-|+++||.+++.+|=
T Consensus 85 aevAkll~d-----aG~iviva~ISP~r~~R~~aR~~~~~-~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 85 AEVAKLLAD-----AGLIVIVAFISPYREDRQMARELLGE-GEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred HHHHHHHHH-----CCeEEEEEeeCccHHHHHHHHHHhCc-CceEEEEeCCCHHHHHhcC
Confidence 223334443 345666665333 3333333221 2357899999999998875
No 158
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.18 E-value=1.2e-06 Score=71.55 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC--CCeechhhhHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQ 100 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g--~~~is~~dllr~ 100 (238)
++++|+|+|||||||+|..+++.++ +.+++++.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~ 40 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD 40 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH
Confidence 4689999999999999999999987 456666554443
No 159
>PLN02165 adenylate isopentenyltransferase
Probab=98.14 E-value=1.4e-05 Score=71.62 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
+.++..|+|+||+||||||++..||+.++..+||+|.+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34666899999999999999999999999999999876
No 160
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.13 E-value=1.6e-05 Score=69.01 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
....++|.||||+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999875
No 161
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=1.8e-05 Score=73.00 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh----CC-CeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHH--HHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL----EV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI--FALLSKR 134 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~----g~-~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i--~~ll~~~ 134 (238)
++..++|+||+||||||++..||..+ |. .++...|..|.. -..+++.+.+.... |.... ...+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a------A~eQLk~yAe~lgv-p~~~~~~~~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA------AIEQLKRYADTMGM-PFYPVKDIKKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh------HHHHHHHHHHhcCC-CeeehHHHHHHHHH
Confidence 45689999999999999999999765 21 333344555532 11244444444322 22111 2233334
Q ss_pred HHcccccCCceEEEc--CCc-CCHHHHHHHHhhc-------CCCEEEEEecCH
Q 026464 135 LEEGYYRGESGFILD--GIP-RTRIQAEILDQIV-------DVDLVINFKSIE 177 (238)
Q Consensus 135 l~~~~~~~~~g~IlD--GfP-rt~~qa~~l~~~~-------~~d~vI~L~~~~ 177 (238)
+.. .....+||| |++ ++..|++.|..+. ....+++|++..
T Consensus 295 l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 295 LAR---DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHh---CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 432 234679999 874 7889998886542 224556666544
No 162
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.10 E-value=7.2e-05 Score=65.53 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
..|+|+|.+||||||..+.| +.+|+-+|+ .+|..++.+++............
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD---------------------------NlP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVD---------------------------NLPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEc---------------------------CCcHHHHHHHHHHHHhcCCCCce
Confidence 46899999999999988877 577776662 24555655555433221111223
Q ss_pred ceEEEcCC----cCCHHH-HHHHHhhcCCCEEEEEecCHHHHHHHHhc-CCCCC
Q 026464 144 SGFILDGI----PRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLE-SEAFS 191 (238)
Q Consensus 144 ~g~IlDGf----Prt~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~-R~~~~ 191 (238)
-.+++|-- .....+ ...+.+....-.+|+|+++++++++|... |+.+|
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HP 107 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHP 107 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCC
Confidence 45667732 111111 12222333345699999999999999965 55555
No 163
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=4.2e-05 Score=65.72 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=37.3
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~ 103 (238)
+.+|.+|+|-|+||+||||+|..||.++|+.++--.|.+|+.+.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR 129 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR 129 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence 34788999999999999999999999999988866677776554
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.03 E-value=3.5e-06 Score=64.35 Aligned_cols=33 Identities=33% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCee--chhhhH
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLV 98 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~i--s~~dll 98 (238)
|+|.||||+||||+++.+++.++.+++ +.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 689999999999999999999997665 444444
No 165
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.95 E-value=9.4e-05 Score=64.33 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
..++|.|+||+|||++|+.|++.+|.+++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 347899999999999999999999987763
No 166
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.94 E-value=0.00025 Score=58.15 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=59.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCC----hH---HHHHH--H---HHHcC-------CCCChH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS----AL---YKQIA--N---AVNEG-------KLVPED 125 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s----~~---g~~i~--~---~l~~g-------~~vpd~ 125 (238)
+|.|.+..|||++|+|+.||+++|+++++- +++.+...... .+ .+... . .+..+ ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 578999999999999999999999999998 77765544210 00 01111 1 11111 122233
Q ss_pred HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 126 ~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.+.....+.+.+.. ...++|+.|.- +..+.+-.+-.+-|+|.+|.+...+|+.++.
T Consensus 80 ~~~~~~~~~i~~la--~~~~~Vi~GR~-----a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 80 KIFRAQSEIIRELA--AKGNCVIVGRC-----ANYILRDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHHHHHHHHHH--H---EEEESTT-----HHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccCCEEEEecC-----HhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 44443333333321 12456666641 1112111223578999999999999999874
No 167
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.94 E-value=9.5e-06 Score=81.07 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=40.2
Q ss_pred CCCCCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhh
Q 026464 56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (238)
Q Consensus 56 ~~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (238)
.-|.|-..+.|.|-|||||||||+|+.||++||+.++++|.+.|..
T Consensus 27 ~~~~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 27 LQCRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eeecccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 3455545578999999999999999999999999999999999863
No 168
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.00017 Score=58.17 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcCCCChHH---------HHHHHHHHcCC-----------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALY---------KQIANAVNEGK----------- 120 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~s~~g---------~~i~~~l~~g~----------- 120 (238)
++..|+++||+|+||-|+-......+.- +-+ .++|..+.....-| .++.+.-.+|.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~---~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRL---HFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCce---EEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcc
Confidence 5778999999999999999999888733 211 01222222111100 11222212221
Q ss_pred -CCChHHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCC
Q 026464 121 -LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (238)
Q Consensus 121 -~vpd~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (238)
-+|-+ +...|.. +..+|..|--.-.-|+... ..--++|++.+++++|.+||.+|+..+
T Consensus 81 Ygip~e-----Id~wl~~-----G~vvl~NgSRa~Lp~arrr---y~~Llvv~ita~p~VLaqRL~~RGREs 139 (192)
T COG3709 81 YGIPAE-----IDLWLAA-----GDVVLVNGSRAVLPQARRR---YPQLLVVCITASPEVLAQRLAERGRES 139 (192)
T ss_pred ccCchh-----HHHHHhC-----CCEEEEeccHhhhHHHHHh---hhcceeEEEecCHHHHHHHHHHhccCC
Confidence 12322 2333443 3456666654334443322 122369999999999999999998643
No 169
>PRK09169 hypothetical protein; Validated
Probab=97.92 E-value=8e-05 Score=79.18 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
..|+|+|.+|+||||+++.|++++++.+++.+..+.+. .|+.|.+++..-. +..+.-...+.+.+..
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr~------ 2177 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALRW------ 2177 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhcC------
Confidence 46999999999999999999999999999998888764 4456666654333 6666666666665531
Q ss_pred ceEEEc--CCc-CCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 144 SGFILD--GIP-RTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 144 ~g~IlD--GfP-rt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
..||. |+- ....-...|.+. .++|++..+.+++.+|+...
T Consensus 2178 -~vVLSTGGGav~~~enr~~L~~~---GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2178 -EVVLPAEGFGAAVEQARQALGAK---GLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred -CeEEeCCCCcccCHHHHHHHHHC---CEEEEEECCHHHHHHHhccC
Confidence 12222 332 333333334433 46999999999999999644
No 170
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=3.6e-05 Score=67.92 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999875
No 171
>PHA03136 thymidine kinase; Provisional
Probab=97.87 E-value=0.00078 Score=61.26 Aligned_cols=128 Identities=15% Similarity=0.082 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC--CeechhhhH--HhhcCCCChHHHHHHHH---HHcCCCCCh----------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLV--RQELSPRSALYKQIANA---VNEGKLVPE---------- 124 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~--~~is~~dll--r~~~~~~s~~g~~i~~~---l~~g~~vpd---------- 124 (238)
+..+|.|-|+.|+||||+++.|.+.-+. ..+.+.+=+ ++.+..+++.-+.|.+. ..+|+.-..
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~~~~~~~~vl~v~EPm~yW~~v~~~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~~~ 114 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLMEMPDTLAARLYLAEPMAAWRNHFGGADMIKEINEIQELKARGDIACRDAKAIAAAEL 114 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHhccccCCCeeeecCchHHHHhhcCcchHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 5678999999999999999999873222 223322222 22222233444444433 235554222
Q ss_pred --------HHHHHHHHHHHHcc-----c--ccCCceEEEcCCcCC----------------HHHHHHHH----hhcCCCE
Q 026464 125 --------DVIFALLSKRLEEG-----Y--YRGESGFILDGIPRT----------------RIQAEILD----QIVDVDL 169 (238)
Q Consensus 125 --------~~i~~ll~~~l~~~-----~--~~~~~g~IlDGfPrt----------------~~qa~~l~----~~~~~d~ 169 (238)
.+....+...+... . -....-+|+|-.|-. ..+...+. ..-.+|.
T Consensus 115 Q~~fa~P~~~~~~~~~~~~g~~~~~~~~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~~~~~p~pD~ 194 (378)
T PHA03136 115 QLQFAAPLRIFHHVASNLFGSERCYSAAARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISGIPDEPHGGN 194 (378)
T ss_pred HHHhccHHHHHHHHHHHhhccccccCCCCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhhCcCCCCCCE
Confidence 11111122222211 0 112356788854321 11111111 1125899
Q ss_pred EEEEecCHHHHHHHHhcCCC
Q 026464 170 VINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 170 vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+|+|+++.+++.+|+.+|+.
T Consensus 195 IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 195 IVIMDLDECEHAERIIARGR 214 (378)
T ss_pred EEEEeCCHHHHHHHHHHcCC
Confidence 99999999999999999985
No 172
>PRK06761 hypothetical protein; Provisional
Probab=97.85 E-value=9.5e-05 Score=65.06 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
+..|+|.|+|||||||+++.|+++++...++++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 4579999999999999999999999876666544
No 173
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.85 E-value=5.9e-05 Score=65.75 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr 99 (238)
.|.|.|++||||||+++.|++.++ +.+|+.|+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 378899999999999999998874 45677777766
No 174
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.82 E-value=0.00013 Score=60.72 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCC----C-------------ChHHHHHHHHHHcCCCCCh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSP----R-------------SALYKQIANAVNEGKLVPE 124 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~----~-------------s~~g~~i~~~l~~g~~vpd 124 (238)
..+|.|.|...|||||+|+.|.+.| |...|+-||+..-+..- . ...++.+...+.+....|+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~ 83 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPE 83 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccch
Confidence 4678888999999999999999998 77888888877643221 0 0123445555555555544
Q ss_pred HHHHHHHH--------HHHHcccccCCceEEEcCCcCC--HHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCC
Q 026464 125 DVIFALLS--------KRLEEGYYRGESGFILDGIPRT--RIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (238)
Q Consensus 125 ~~i~~ll~--------~~l~~~~~~~~~g~IlDGfPrt--~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (238)
--..++. +..+. ......-+|+|||-.. ..|.. ..|..|++..+.+++.+|-..|...+
T Consensus 84 -ar~~~v~~~~~~~~~~~~q~-~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~~Rt~y~ 152 (225)
T KOG3308|consen 84 -AREHLVSYANFEHYAQQFQI-KAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRREARTYYP 152 (225)
T ss_pred -HhhhhhhhhHHHHHhhhcCc-ccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhcccccCC
Confidence 1111111 11111 1133566899998432 23332 34678999999999999998887544
No 175
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.82 E-value=1.9e-05 Score=70.31 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
++..|+|+||+||||||+|..||++++..+||.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 457899999999999999999999999999988773
No 176
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.82 E-value=0.00018 Score=70.48 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
...++++|.||+||||+++.|++.+++..+++
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence 46799999999999999999999986655543
No 177
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=1.1e-05 Score=64.98 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~ 103 (238)
.+++|+|+|+||+||||++.++++.+.-.-++++-++-.++.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 678999999999999999999999886555556555555554
No 178
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.81 E-value=3.7e-05 Score=66.81 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=66.3
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHhCC-------CeechhhhH------Hhh-cC--CC----ChHHH--HHHHHH
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEV-------PHISMGSLV------RQE-LS--PR----SALYK--QIANAV 116 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~-------~~is~~dll------r~~-~~--~~----s~~g~--~i~~~l 116 (238)
....+.+|.+.|+||+||||+|+.|+..+.. ..|.||-++ .+. +. .+ .+... .+-..+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v 157 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV 157 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence 3467899999999999999999999987732 233333222 110 00 00 11111 111112
Q ss_pred HcCCC---CC--hHHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 117 NEGKL---VP--EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 117 ~~g~~---vp--d~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..|.. +| +..+...+-....- .....-+|+.|.-.-..+..++.-..-+|+.|+++++.+.+.+|+.+|..
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v--~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQV--VPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred hcCCCccccccccccccccCCCceee--cCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 22322 11 11111111111100 02234567777532222222111113469999999999999999999864
No 179
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.79 E-value=5e-05 Score=59.62 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g 88 (238)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999864
No 180
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.75 E-value=9.8e-05 Score=70.77 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLV 98 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dll 98 (238)
..+..|.|.||+||||||+++.|+..+ +...|++++..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 356899999999999999999999987 45678887753
No 181
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.75 E-value=3.4e-05 Score=64.96 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=61.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhh-cCCCCh--HHHH---------HHHHHHcCCCCChHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE-LSPRSA--LYKQ---------IANAVNEGKLVPEDVIFAL 130 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~-~~~~s~--~g~~---------i~~~l~~g~~vpd~~i~~l 130 (238)
+..++|.||+|+|||.+|-.||+++|.++|+.|.+.... +.-+|. .-.. -...+.+|. ++.+-..+.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~ 79 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER 79 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence 357899999999999999999999999999987765432 221111 0000 022355666 455555666
Q ss_pred HHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhc-C--CCEEEEEecCHH-HHHHHHhcC
Q 026464 131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-D--VDLVINFKSIED-QLVKRNLES 187 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~-~--~d~vI~L~~~~e-~l~~Rl~~R 187 (238)
+..++.... .+.++||.|---+.-..-.-+... . .-.+..+.++++ .-..|...|
T Consensus 80 Li~~v~~~~--~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 80 LISEVNSYS--AHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHHTTT--TSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHHhcc--ccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 667777653 378999998644433222212221 1 235777788774 444555444
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00016 Score=68.98 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechh--hhHHhhcCCCChHHHHHHHHHHcCCC--------------------C
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQELSPRSALYKQIANAVNEGKL--------------------V 122 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~--dllr~~~~~~s~~g~~i~~~l~~g~~--------------------v 122 (238)
=++|.||||+|||.+|+.+|.++|+|++++. +++-. +...++ +.|++.+.+... .
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG-vSGESE--kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a 301 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG-VSGESE--KKIRELFDQAKSNAPCIVFIDEIDAITPKREEA 301 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc-cCcccH--HHHHHHHHHHhccCCeEEEeecccccccchhhH
Confidence 3788999999999999999999999998763 22221 111111 234433332211 1
Q ss_pred ChHHHHHHHHHHHHccc---c--cCCceEEEcCC---cCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHh
Q 026464 123 PEDVIFALLSKRLEEGY---Y--RGESGFILDGI---PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 123 pd~~i~~ll~~~l~~~~---~--~~~~g~IlDGf---Prt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
-.|+-..++.+-+...+ . ..+.++++=|- |..++ ..|...+.+|.=|.|.+|.++..++++
T Consensus 302 qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRRaGRFdrEI~l~vP~e~aR~~IL 370 (802)
T KOG0733|consen 302 QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRRAGRFDREICLGVPSETAREEIL 370 (802)
T ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhccccccceeeecCCchHHHHHHH
Confidence 11333333333333221 1 11345555553 44444 345567889999999999998888775
No 183
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.70 E-value=0.00012 Score=55.90 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=46.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh--------CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCC--ChHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV--PEDVIFALL 131 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~--------g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v--pd~~i~~ll 131 (238)
....++|.|+||+|||++++.+++.+ ....+.+. + .... ....+...+.+.+.....- +.+.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C-PSSR-TPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H-HHHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e-CCCC-CHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 34568999999999999999999987 44333221 1 1111 1123445555555443322 334444667
Q ss_pred HHHHHcccccCCceEEEcCC
Q 026464 132 SKRLEEGYYRGESGFILDGI 151 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGf 151 (238)
.+.+... ...-+|||.+
T Consensus 80 ~~~l~~~---~~~~lviDe~ 96 (131)
T PF13401_consen 80 IDALDRR---RVVLLVIDEA 96 (131)
T ss_dssp HHHHHHC---TEEEEEEETT
T ss_pred HHHHHhc---CCeEEEEeCh
Confidence 7777764 2247899976
No 184
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.70 E-value=1.9e-05 Score=63.40 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~ 100 (238)
+|+|+|+||+||||+++.|++. |++++ .+..|.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 5899999999999999999988 88877 444443
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.68 E-value=3.1e-05 Score=58.37 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|+||||+||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4578999999999999999999998665
No 186
>PLN02840 tRNA dimethylallyltransferase
Probab=97.68 E-value=4.6e-05 Score=70.37 Aligned_cols=36 Identities=31% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
.++..|+|.||+||||||++..|+++++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 355689999999999999999999999998888865
No 187
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00019 Score=64.57 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHHhhcCCCChHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSALYKQIAN 114 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~s~~g~~i~~ 114 (238)
.|+=|++.||||+|||-+|+.+|.+.+..+|- -.+|+++.+-.+..+-..+-+
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~ 238 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFE 238 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHH
Confidence 45568999999999999999999999887664 478899888877665444433
No 188
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.64 E-value=0.00044 Score=65.35 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+.-|+|.||||+|||++|+.+|.+++++.+.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 445689999999999999999999999987764
No 189
>PF05729 NACHT: NACHT domain
Probab=97.62 E-value=9.4e-05 Score=58.42 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999877
No 190
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.60 E-value=5.2e-05 Score=69.95 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
.|..|+|+||||+||||+|+.||+.++.+++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 45679999999999999999999999999998864
No 191
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.58 E-value=0.00022 Score=62.79 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34569999999999999998888765
No 192
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.58 E-value=0.0001 Score=68.06 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
.+..|+|+||||+||||+|+.||+.++.+++.++.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 45679999999999999999999999999888764
No 193
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.0018 Score=52.24 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh--CCCeechhhhHHhhcCCCCh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSA 107 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~s~ 107 (238)
+..+++-||.||||||+-..+--.+ ++.+|+.|.+.-+ +.+..+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p 47 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNP 47 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCc
Confidence 5567889999999999876655444 5678888776554 443333
No 194
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.56 E-value=5.8e-05 Score=66.58 Aligned_cols=31 Identities=32% Similarity=0.343 Sum_probs=29.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
|+|+||+|||||+++..|+++++..+||+|+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7899999999999999999999999999876
No 195
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.55 E-value=5.9e-05 Score=64.08 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
...+++.||||.||||+|..+|+++|..+..+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 34689999999999999999999999876533
No 196
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00058 Score=65.62 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcCCCCh-HHHH----------------HHHHH-Hc--
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSA-LYKQ----------------IANAV-NE-- 118 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~s~-~g~~----------------i~~~l-~~-- 118 (238)
.+|.-|++.||||+||||+|+.||.+-+..++++ .+++-+....... +.+. |.... +.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g 545 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG 545 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC
Confidence 4667799999999999999999999988887776 4555544433211 1111 11111 11
Q ss_pred -CCCCChHHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhc
Q 026464 119 -GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (238)
Q Consensus 119 -g~~vpd~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (238)
+..+.+.++.+++. .|.... ...+-+|+-..-|-..=...+-.=+..|.+|++..|++.....+.+
T Consensus 546 ~~~~v~~RVlsqLLt-EmDG~e-~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 546 SSSGVTDRVLSQLLT-EMDGLE-ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred CccchHHHHHHHHHH-Hccccc-ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence 11233444444442 343322 1234445533322111112222335689999999999877666643
No 197
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.53 E-value=6.6e-05 Score=58.43 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=25.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
|+|.|+||+|||++++.+|+.++.+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 7899999999999999999999877653
No 198
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.52 E-value=7.9e-05 Score=63.23 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCe-echhhhHHhhcC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS 103 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~-is~~dllr~~~~ 103 (238)
++|.|+|.|||||||+++.+.+ .|.++ +++++-+++.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHHHH
Confidence 4789999999999999998865 56666 999998887543
No 199
>PLN02748 tRNA dimethylallyltransferase
Probab=97.51 E-value=0.00012 Score=68.68 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
.++..|+|+||+||||||++..||++++..+||.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 456689999999999999999999999999999874
No 200
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00016 Score=64.32 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
...|++.||||+|||++|+.||+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4579999999999999999999998654
No 201
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.49 E-value=0.00069 Score=63.19 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+|..|+++|++|+||||++..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999999877
No 202
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.40 E-value=0.00015 Score=66.85 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.5
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
.+....+|+|+|++||||||+++.|++.||...+.
T Consensus 215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 215 RPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred hhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 35567899999999999999999999999987653
No 203
>PRK12377 putative replication protein; Provisional
Probab=97.40 E-value=0.0021 Score=55.65 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR 99 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr 99 (238)
..++|.|+||+|||+++..++..+ | +.++++.+++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 468899999999999999999887 3 34666666665
No 204
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.39 E-value=0.0068 Score=52.50 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
..|+|.|.+||||||-.+.| +.+|+-+++ .+|.+++-+++.-..........
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvD---------------------------NLPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVD---------------------------NLPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeec---------------------------CCCHHHHHHHHHHHhhcccCCce
Confidence 46889999999999988776 566765552 23555655555422211101123
Q ss_pred ceEEEcC----CcCCHHHH-HHHHhhcCC-CEEEEEecCHHHHHHHHhc-CCCCC
Q 026464 144 SGFILDG----IPRTRIQA-EILDQIVDV-DLVINFKSIEDQLVKRNLE-SEAFS 191 (238)
Q Consensus 144 ~g~IlDG----fPrt~~qa-~~l~~~~~~-d~vI~L~~~~e~l~~Rl~~-R~~~~ 191 (238)
-.+++|= |+....+. ..+.+...+ --+++|+++++++++|... |+.+|
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HP 108 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHP 108 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCC
Confidence 4577772 33333222 223322222 3599999999999999965 55555
No 205
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.39 E-value=0.0017 Score=56.93 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|+++|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456788899999999999999999876
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.38 E-value=0.00016 Score=65.60 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
+...++|.|||||||||+++.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999999865
No 207
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.36 E-value=0.0015 Score=62.12 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|.||||+|||++++.+++.++.+
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4568999999999999999999998654
No 208
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.34 E-value=0.0027 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+++.|+||+||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.34 E-value=0.00023 Score=54.15 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh---CCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~ 94 (238)
...++|.|+||+||||+++.+++.+ +.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 4468899999999999999999988 5554433
No 210
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.33 E-value=0.00042 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
++|+|+||||||++|..++...+-+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 6899999999999999999886543
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.30 E-value=0.0037 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|+|+|+||+||||++..||..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 212
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.28 E-value=0.00021 Score=64.07 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
..|+|.|+||+||||+++.||+.+|++++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 359999999999999999999999998774
No 213
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.28 E-value=0.0019 Score=60.11 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|.++|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999999876
No 214
>PRK09087 hypothetical protein; Validated
Probab=97.26 E-value=0.00084 Score=57.19 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC-------C--CChHHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-------L--VPEDVIFALLSKR 134 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~-------~--vpd~~i~~ll~~~ 134 (238)
..++|.|++||||||+++.+++..+..+++.+++..+... .+.++- . ..++.+..++...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~l~iDDi~~~~~~~~~lf~l~n~~ 113 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAAN-----------AAAEGPVLIEDIDAGGFDETGLFHLINSV 113 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHH-----------hhhcCeEEEECCCCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999988654432211 111110 0 1233345555443
Q ss_pred HHcccccCCceEEEcCC--cCCHHH-HHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 135 LEEGYYRGESGFILDGI--PRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 135 l~~~~~~~~~g~IlDGf--Prt~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
.+. +..+|+-+- |..... ...|.....--.++.+.-++++.+..+..+
T Consensus 114 ~~~-----g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 114 RQA-----GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred HhC-----CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 332 244666543 222221 122333334446888888887655555544
No 215
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.25 E-value=0.00026 Score=65.06 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr~ 100 (238)
.+..|+|.||||+|||++|+.+|.+++.+++. ..+++..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 45569999999999999999999999876654 4555543
No 216
>PRK08116 hypothetical protein; Validated
Probab=97.23 E-value=0.0033 Score=54.98 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr~ 100 (238)
.-++|.|+||+|||+++..+++.+ + +.++++.+++..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 348899999999999999999875 3 345677776653
No 217
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.23 E-value=0.00025 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+|+|+|+||+||||+.+++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 218
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.23 E-value=0.00036 Score=54.67 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.+..|+|.|+.|+||||+++.+++.+|+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999999999999999864
No 219
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.21 E-value=0.00033 Score=63.76 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCee--chhhhHHhhcC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELS 103 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~i--s~~dllr~~~~ 103 (238)
..|+.+.|.||||+|||.+|+.+|+++|++.| |.++|+.+..-
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 35778999999999999999999999998754 56777655443
No 220
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0034 Score=57.33 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=37.1
Q ss_pred cccccccCCCCCCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 48 EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
-|+.+.+.+......=.-++++||||+|||.+|+.+|.+-|..++++
T Consensus 230 lPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 230 LPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred hhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 56666666655543335689999999999999999999999887765
No 221
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.17 E-value=0.00037 Score=62.58 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
..+|+|+|+||+||||+++.|+..++.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 568999999999999999999999998874
No 222
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.17 E-value=0.0004 Score=64.36 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~ 95 (238)
...++|.||||+|||++|+.||+.++.+++.++
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 356899999999999999999999998877553
No 223
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.17 E-value=0.0024 Score=57.58 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|.||||+|||++++.+.+.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999999765
No 224
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.002 Score=63.39 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~ 100 (238)
|.-++|+||||+|||-+|+.+|.+-|+|++++ .+++.-
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 44588999999999999999999999999976 344443
No 225
>PLN02796 D-glycerate 3-kinase
Probab=97.17 E-value=0.00036 Score=62.95 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dll 98 (238)
.++.+|.|.|++||||||+++.|+..+. ...|+++++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3678999999999999999999998874 3567777654
No 226
>CHL00176 ftsH cell division protein; Validated
Probab=97.16 E-value=0.0034 Score=61.33 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+.-++|.||||+|||++++.+|.+.+++++.+
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 345699999999999999999999999887765
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.16 E-value=0.0028 Score=62.85 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~ 100 (238)
+.-|+|.||||+|||++++.+|...+.+++++ .+++.+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 44589999999999999999999998887765 445544
No 228
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.16 E-value=0.00041 Score=63.04 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+|||++++.+++.++.+++.+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 355699999999999999999999998776544
No 229
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.00039 Score=58.02 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
|..|+|+||+|+||||.+.+||..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 57899999999999999999998873
No 230
>PRK06620 hypothetical protein; Validated
Probab=97.15 E-value=0.00097 Score=56.33 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
..++|.||||+|||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 358899999999999999999988865554
No 231
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0004 Score=63.34 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
...-.+|.||||+||||+|+.||...+..+.-+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 334578899999999999999999998876643
No 232
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.14 E-value=0.0034 Score=58.46 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+|..++++|++||||||++..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 233
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00048 Score=61.19 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dll 98 (238)
.+..|+|+||.+||||-+|-.||+++|.++||+|.+-
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 4567999999999999999999999999999997653
No 234
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.12 E-value=0.00046 Score=63.70 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.|.-++|.||||+|||++++.+|...+.+++.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 456799999999999999999999998877654
No 235
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0025 Score=58.66 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+..|+++||+|+||||.+..||..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998763
No 236
>PF13173 AAA_14: AAA domain
Probab=97.10 E-value=0.00055 Score=52.77 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC----CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g----~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
..++|.||.|+||||+++.+++.+. +.+++.++.--.... .++ +.+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~------------------~~~--~~~~~~~~~~~-- 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA------------------DPD--LLEYFLELIKP-- 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh------------------hhh--hHHHHHHhhcc--
Confidence 4688999999999999999998876 677777654332100 001 22223222221
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHhhc--CCCEEEEEecCHHHHHHH
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKR 183 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~~~~e~l~~R 183 (238)
+..-++||-+-........++... .++.-|++..+......+
T Consensus 61 --~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 61 --GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred --CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 346688887654444444443332 256778888877666543
No 237
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.10 E-value=0.00045 Score=65.38 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+.-++|.||||+|||++++.||.+.+++++.+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 44599999999999999999999999887754
No 238
>PRK06893 DNA replication initiation factor; Validated
Probab=97.09 E-value=0.00092 Score=56.91 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
..++|.||||+|||+++..++.++ ++.++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 457899999999999999999875 55666664
No 239
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.002 Score=62.65 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=75.9
Q ss_pred cccccccCCCCCCCC-CeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcCCCChHHHHHHHHHHc------
Q 026464 48 EPMLRLDSAGSPPRR-GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSALYKQIANAVNE------ 118 (238)
Q Consensus 48 ~~~~~~~~~~~~p~~-~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~s~~g~~i~~~l~~------ 118 (238)
-|..+...+..+|-| ..-|++.||||+|||.++..+|...++.+||+ .+|+.+.+..... .++..+++
T Consensus 685 ~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq---~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 685 WPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQ---NVRDLFERAQSAKP 761 (952)
T ss_pred ccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHH---HHHHHHHHhhccCC
Confidence 344444455555554 35699999999999999999999999999987 4677666543221 22222111
Q ss_pred ---------------C---CCCChHHHHHHHHHHHHcccccCCce-EEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHH
Q 026464 119 ---------------G---KLVPEDVIFALLSKRLEEGYYRGESG-FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQ 179 (238)
Q Consensus 119 ---------------g---~~vpd~~i~~ll~~~l~~~~~~~~~g-~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~ 179 (238)
| .-|.|+++.+++-+ |... .+-+| +|+-..-|-.-=...|-+-+..|..|+...|++.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTe-lDG~--Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTE-LDGA--EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHh-hccc--cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 1 12446666666543 3322 12233 3444332321111223344678999999998875
Q ss_pred HHHHH
Q 026464 180 LVKRN 184 (238)
Q Consensus 180 l~~Rl 184 (238)
-+-++
T Consensus 839 eRl~i 843 (952)
T KOG0735|consen 839 ERLEI 843 (952)
T ss_pred HHHHH
Confidence 43333
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0031 Score=54.73 Aligned_cols=39 Identities=36% Similarity=0.491 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr~ 100 (238)
++..++|+|+||+|||.++..|+.++ | +.++++.+++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 67789999999999999999999876 3 356677787774
No 241
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.06 E-value=0.00049 Score=63.69 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
...|+|.||||+|||++|+.||+.++++++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 35799999999999999999999999887643
No 242
>PF13245 AAA_19: Part of AAA domain
Probab=97.06 E-value=0.00061 Score=48.12 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=17.2
Q ss_pred eEEEEEcCCCCCch-HHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKH-VYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKs-T~a~~La~~~ 87 (238)
..++|.|||||||| |+.+.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34667999999999 5555555544
No 243
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.06 E-value=0.0014 Score=58.64 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|.|+||+||||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999999877
No 244
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.05 E-value=0.00078 Score=52.22 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..|.+|+.+.+-|+||+||+.+++.||+.+
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999999999984
No 245
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00052 Score=66.58 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCee--chhh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGS 96 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~i--s~~d 96 (238)
-++.++||+||||+|||++++.+|+.+|-.++ |+|-
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 46789999999999999999999999987655 5554
No 246
>PHA02244 ATPase-like protein
Probab=97.05 E-value=0.00048 Score=62.71 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dll 98 (238)
..++|.||||+|||++++.|+..++.+++.+..++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 34889999999999999999999999999876554
No 247
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.04 E-value=0.00066 Score=59.84 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
.+..++|.||||+|||++++.+++.++...
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 344588999999999999999999998653
No 248
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.03 E-value=0.0034 Score=62.28 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..|+|.||||+||||+++.++..++.+++.+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 345689999999999999999999998876644
No 249
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0077 Score=54.83 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|.||||+||||+|+.+++.+++.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 4457899999999999999999998753
No 250
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0056 Score=58.94 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHHhhcCCCC-hHHHHHHHHHH-------------cCCC---
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRS-ALYKQIANAVN-------------EGKL--- 121 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~s-~~g~~i~~~l~-------------~g~~--- 121 (238)
.-|.-+++.||||+|||.+|+.+|-+-++|+++ -.+++...+.-+. .......++-. -|..
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~ 260 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 260 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCC
Confidence 356679999999999999999999999998665 4666665554322 11111111111 1110
Q ss_pred ---CChHHHHHHHHHHHHccccc-C-CceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHh
Q 026464 122 ---VPEDVIFALLSKRLEEGYYR-G-ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 122 ---vpd~~i~~ll~~~l~~~~~~-~-~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
...+...+.+.+-+-+.+-. . ..-.|+.+.+|-.-....|-+-+..|.-|.++.|+-..++.+.
T Consensus 261 g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Il 329 (596)
T COG0465 261 GLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQIL 329 (596)
T ss_pred CCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHH
Confidence 11223333343333332211 1 2346777888876666666666788999999999944444443
No 251
>PRK10867 signal recognition particle protein; Provisional
Probab=97.01 E-value=0.0081 Score=56.04 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+|..|+++|++||||||.+..||..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999998888755
No 252
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0012 Score=62.26 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
-|+=|+++||||+|||.+|+.+|-+-|+|++.+
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 466699999999999999999999999998865
No 253
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.99 E-value=0.00041 Score=59.63 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=19.2
Q ss_pred EEcCCCCCchHHHHHHHHHhCC
Q 026464 68 LIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 68 l~G~PGSGKsT~a~~La~~~g~ 89 (238)
|+|||||||||+|+.+.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999998743
No 254
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.98 E-value=0.0015 Score=55.88 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechh
Q 026464 56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (238)
Q Consensus 56 ~~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~ 95 (238)
.+..| ++..++|.|+|||||||+|..++... | +.+++++
T Consensus 15 ~GG~~-~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 15 HGGIP-ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCCc-CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 34555 78889999999999999998766442 3 4456543
No 255
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0019 Score=57.19 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCee--chhhhHHhhcCCCChHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSPRSALYKQIANA 115 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~i--s~~dllr~~~~~~s~~g~~i~~~ 115 (238)
.-|+++||||+|||.+|+.+|-+-+-.++ |..||+.+.+.....+-+.+-++
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFem 220 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEM 220 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHH
Confidence 45999999999999999999999886655 45788888776554444444443
No 256
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.96 E-value=0.00077 Score=62.90 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+|||++++.+|.+++.+++.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 455688999999999999999999998776643
No 257
>PRK04195 replication factor C large subunit; Provisional
Probab=96.96 E-value=0.00078 Score=63.62 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+..++|.||||+||||+++.|++++++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56789999999999999999999999877644
No 258
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.00073 Score=59.22 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
-.++++||||-||||+|..+|.++|+..
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 4699999999999999999999998753
No 259
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0036 Score=60.06 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=40.9
Q ss_pred CcccccccCCCCCC-CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcC
Q 026464 47 SEPMLRLDSAGSPP-RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELS 103 (238)
Q Consensus 47 ~~~~~~~~~~~~~p-~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~ 103 (238)
-.|+...|.+.... .-|-=|+++||||+|||-+|+.+|.+-|..+|++ .+|+-+++-
T Consensus 528 ~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 528 LAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred hhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 36666666422111 2345689999999999999999999998888876 456665543
No 260
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.94 E-value=0.00058 Score=59.31 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELS 103 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~ 103 (238)
-|..|++.||||+|||..|+.||.+.++|.+.+ .+|+-+++.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 467899999999999999999999999887754 455555443
No 261
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.94 E-value=0.00079 Score=60.30 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
+..++|.||||+||||+++.+|+.++....
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 456889999999999999999999987543
No 262
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.93 E-value=0.00061 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g 88 (238)
|.|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998663
No 263
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.93 E-value=0.0008 Score=62.23 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dll 98 (238)
.+|.+|.|.|++||||||+++.|...+. +..|++||+.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4689999999999999999999987662 4567777765
No 264
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.023 Score=55.47 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
.+.-++|.|++|+||||+++.|++.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456899999999999999999999987
No 265
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.93 E-value=0.01 Score=47.88 Aligned_cols=126 Identities=14% Similarity=0.081 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh--CCCeechhhhHHhhcCCCChHHHH-HH-H-HHHcCC-CCC---h---HHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQ-IA-N-AVNEGK-LVP---E---DVIFA 129 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~s~~g~~-i~-~-~l~~g~-~vp---d---~~i~~ 129 (238)
++.+|++-|.|-+|||++|..+..-+ .+.||-+|.++.......-.++.. .. . ....|+ +++ - |....
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~ 101 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMH 101 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHH
Confidence 67889999999999999999998877 456777755544322221111110 00 0 001111 111 1 11111
Q ss_pred HHHHHHHcccccCCceEEEcCCcCCHHHHHH-HHhh-cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEI-LDQI-VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~-l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
-....|+.- ...+..+|.|.+-.+..+... +..+ +.+..+|-+.||+|++.+|-..|.
T Consensus 102 ~~r~ai~a~-ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 102 SRRRAIRAY-ADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred HHHHHHHHH-hccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC
Confidence 122233321 133567899987766554332 3333 344568899999999998877654
No 266
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.92 E-value=0.0019 Score=55.69 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+..++|.|++|+||||+++.+++.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999999876
No 267
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.92 E-value=0.0077 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|.|+||+||||+++.+++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999999876
No 268
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.0086 Score=59.24 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|.|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4567899999999999999999999874
No 269
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.01 Score=51.25 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR 99 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr 99 (238)
.++|.|+||+|||+++..++..+ | +.++++.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 58899999999999999999987 3 34556766664
No 270
>PRK04328 hypothetical protein; Provisional
Probab=96.89 E-value=0.0017 Score=56.06 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..| ++-.++|.|+||+|||++|..++..
T Consensus 18 GGip-~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 18 GGIP-ERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCc-CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444 6788999999999999999987654
No 271
>PRK08181 transposase; Validated
Probab=96.89 E-value=0.012 Score=51.50 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr~ 100 (238)
.+..++|+||||+|||.++..++... | +.++++.+++.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 45669999999999999999998653 3 567788887764
No 272
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00088 Score=59.64 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
..-.|+++||.|||||-+|+.||+.+++|+--.
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 345799999999999999999999999997643
No 273
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.88 E-value=0.00074 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+.+|.|+|+.||||||+++.|-..
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999753
No 274
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.88 E-value=0.0012 Score=55.83 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=27.7
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHHHh------CCCeechhh
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISMGS 96 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~------g~~~is~~d 96 (238)
+..| ++-.++|.|+||||||++|..++... ++.++++++
T Consensus 14 GGip-~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 14 GGIP-KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TSEE-TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCC-CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 3444 67789999999999999999866432 345666533
No 275
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.86 E-value=0.001 Score=54.27 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
...++++||+|+|||.+|+.||+.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999985
No 276
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.86 E-value=0.00088 Score=56.19 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dll 98 (238)
.+..++|.|+||+||||+++.+++... +.+++..++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 456799999999999999999998753 3455555443
No 277
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.86 E-value=0.001 Score=61.50 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+...++|.||||+||||+++.|++..+..++.+
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 334688899999999999999999988776654
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.85 E-value=0.00097 Score=49.95 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
+|+|+|++||||||+.+.|+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999986553
No 279
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.001 Score=64.68 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC--eechhhh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSL 97 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~--~is~~dl 97 (238)
.++++++|.||||+|||++++.+|+.+|-. .+|+|-+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 478999999999999999999999999765 4566554
No 280
>PRK06526 transposase; Provisional
Probab=96.82 E-value=0.0012 Score=57.37 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (238)
.+..++|+||||+|||+++..|+.+. .+.++++.+++.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 45679999999999999999998764 3345556555553
No 281
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.81 E-value=0.0011 Score=59.73 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC--CCe--echhhhHHhhcCCCChHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPH--ISMGSLVRQELSPRSALYKQIAN 114 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g--~~~--is~~dllr~~~~~~s~~g~~i~~ 114 (238)
.+.-|++.||||+|||.+|-.+|+++| +|+ +|-+++...++.....+-+.+++
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~Rr 120 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRR 120 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHH
Confidence 456799999999999999999999996 444 45556655555443333333333
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.80 E-value=0.002 Score=54.68 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
+..| ++-.++|.|+|||||||++..++... .+.+++++
T Consensus 20 gG~~-~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 20 GGIP-FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCCc-CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3444 67788899999999999999997543 34455553
No 283
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.80 E-value=0.00061 Score=53.03 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
.++|.|+||+||||+++.||+..|..+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 37899999999999999999999876553
No 284
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.79 E-value=0.0013 Score=54.02 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (238)
.+..++|.|+||+|||.+|..++.++ .+.++++.+|+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 45679999999999999999999764 4567788888765
No 285
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.79 E-value=0.00073 Score=57.70 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=19.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
-+|+|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 5789999999999998887765
No 286
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.79 E-value=0.0011 Score=62.60 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCC----------ChHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLV----------PEDV 126 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v----------pd~~ 126 (238)
++..++|.|+||+||||++..++... | +.+++.++-..+....-..+|-.+.+++.+|.+. +++.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 77889999999999999999998754 3 4566654322222211122333345555555431 1333
Q ss_pred HHHHHHHHHHcccccCCceEEEcCC
Q 026464 127 IFALLSKRLEEGYYRGESGFILDGI 151 (238)
Q Consensus 127 i~~ll~~~l~~~~~~~~~g~IlDGf 151 (238)
...+.+.+++. ...-+|||+.
T Consensus 342 -~~~i~~~i~~~---~~~~vvIDsi 362 (484)
T TIGR02655 342 -LQIIKSEIADF---KPARIAIDSL 362 (484)
T ss_pred -HHHHHHHHHHc---CCCEEEEcCH
Confidence 33344455542 3467899975
No 287
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.78 E-value=0.0013 Score=55.50 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLV 98 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dll 98 (238)
...++|.|+||+|||++++.++... .+.+++..++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 3458899999999999999999876 55666665543
No 288
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.76 E-value=0.0013 Score=62.64 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
..+.+|.||||+||||..+.||+++|+.++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 347889999999999999999999997655
No 289
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.75 E-value=0.0016 Score=57.86 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
+..|+|+||.|||||.+|-.||++ +...||.|.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 347999999999999999999999 4588988653
No 290
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.01 Score=58.39 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred cccccccCCCCCCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcC
Q 026464 48 EPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELS 103 (238)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~ 103 (238)
-|.+-.+.+++.-.+.-=|++.||||+|||-+|+.+|-++.+.++|+ -+|+-.++-
T Consensus 690 lPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 690 LPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG 747 (953)
T ss_pred CcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence 44444445544333334589999999999999999999999999987 456655543
No 291
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.74 E-value=0.0027 Score=54.20 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
++-.++|.|+||+||||+|..++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998655443
No 292
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0013 Score=62.23 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+|||++|+.+|...+.+++++
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 445799999999999999999999888877765
No 293
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0058 Score=51.92 Aligned_cols=31 Identities=29% Similarity=0.232 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC-Ceech
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEV-PHISM 94 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~ 94 (238)
.-++|.||.|+||+|+.++|-++++. ..+++
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsv 69 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSV 69 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEe
Confidence 55999999999999999999999974 44444
No 294
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.70 E-value=0.0017 Score=57.81 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++|.||||+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999999873
No 295
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.70 E-value=0.0016 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
|.+|.|+|++||||||+.+.+...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999998753
No 296
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.69 E-value=0.0013 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|+|+||+||||++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998876
No 297
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.69 E-value=0.0015 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
++..+++|.|+||+||||+...|+..
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHc
Confidence 46688999999999999999999854
No 298
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.021 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+|..++|.|+||+|||++++.+++++
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l 66 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEEL 66 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHH
Confidence 44569999999999999999999987
No 299
>PRK09183 transposase/IS protein; Provisional
Probab=96.68 E-value=0.0017 Score=56.48 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLV 98 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dll 98 (238)
.++..++|+||||+|||+++..|+... | +.+++..+++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 356678999999999999999997653 3 3455555554
No 300
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.67 E-value=0.00075 Score=54.80 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=23.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
++|.|+||+|||+++..++... .+.+++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999999887653 34566653
No 301
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.67 E-value=0.0015 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+++|+|||||||++..|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999998753
No 302
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.024 Score=51.81 Aligned_cols=110 Identities=12% Similarity=0.154 Sum_probs=63.1
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh---CC-CeechhhhHHhhcCCCChHHHHHHH-HHHcC-------CC-CCh
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQELSPRSALYKQIAN-AVNEG-------KL-VPE 124 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~---g~-~~is~~dllr~~~~~~s~~g~~i~~-~l~~g-------~~-vpd 124 (238)
+...+|-+|.++|--||||||.|..+|-.| |+ +.+-.+|.+|... .. +++. ....+ .. =|-
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA-----fD-QLkqnA~k~~iP~ygsyte~dpv 169 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA-----FD-QLKQNATKARVPFYGSYTEADPV 169 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch-----HH-HHHHHhHhhCCeeEecccccchH
Confidence 444678899999999999999999999887 33 2333345555321 11 1111 11111 11 122
Q ss_pred HHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhh------cCCCE-EEEEecCH
Q 026464 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI------VDVDL-VINFKSIE 177 (238)
Q Consensus 125 ~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~------~~~d~-vI~L~~~~ 177 (238)
.+..+-+.+ .... .-.-+|+|---|...++..|++. ..||. ++++|++.
T Consensus 170 ~ia~egv~~-fKke---~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 170 KIASEGVDR-FKKE---NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHHHHH-HHhc---CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 334444433 3321 23567778777877777777654 35665 44566665
No 303
>PHA03134 thymidine kinase; Provisional
Probab=96.63 E-value=0.15 Score=45.91 Aligned_cols=128 Identities=18% Similarity=0.153 Sum_probs=68.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH--hCCCeechhhhH--HhhcCCCChHHHHHH---HHHHcCCCCChH--HHH---
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL--LEVPHISMGSLV--RQELSPRSALYKQIA---NAVNEGKLVPED--VIF--- 128 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~--~g~~~is~~dll--r~~~~~~s~~g~~i~---~~l~~g~~vpd~--~i~--- 128 (238)
.+-++|.|-|+.|.||||.++.|++. .+-..+.+.+=+ ++.+- .++.-+.|. +...+|+.-..+ .+.
T Consensus 11 ~~~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f-~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~ 89 (340)
T PHA03134 11 VRIVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEPMAYWRTLF-ETDVVSGIYDAQNRKQQGSLAAEDAAGITAHY 89 (340)
T ss_pred ccEEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCcHHHHHHHh-hhhHHHHHHHHHhHHhccCcchhHHHHHHHHH
Confidence 35678999999999999999998864 343344433322 22211 112222232 224566543321 111
Q ss_pred --------HHH----HHHHHc-ccc---cCCceEEEcCCcCC----------------HHHHHHHHhhc---CC-CEEEE
Q 026464 129 --------ALL----SKRLEE-GYY---RGESGFILDGIPRT----------------RIQAEILDQIV---DV-DLVIN 172 (238)
Q Consensus 129 --------~ll----~~~l~~-~~~---~~~~g~IlDGfPrt----------------~~qa~~l~~~~---~~-d~vI~ 172 (238)
.++ ...+.. ... .....+|+|-.|-. ..+...|.... .+ +.+|+
T Consensus 90 Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~pG~niVl 169 (340)
T PHA03134 90 QARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREPPGGNLVV 169 (340)
T ss_pred HHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCCCCCeEEE
Confidence 111 222221 000 12345788865542 12222222111 24 89999
Q ss_pred EecCHHHHHHHHhcCCC
Q 026464 173 FKSIEDQLVKRNLESEA 189 (238)
Q Consensus 173 L~~~~e~l~~Rl~~R~~ 189 (238)
++.+.++-.+|+.+|..
T Consensus 170 ~~l~~~e~~~Rl~~R~R 186 (340)
T PHA03134 170 TTLNPDEHLRRLRARAR 186 (340)
T ss_pred EeCCHHHHHHHHHHcCC
Confidence 99999999999999985
No 304
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.62 E-value=0.0014 Score=53.67 Aligned_cols=28 Identities=14% Similarity=-0.027 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
++..+.|+|++||||||+.+.|...+.-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 5668999999999999999999988753
No 305
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0018 Score=58.16 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.|+.|+++||.|+|||.+|++||+--|.|+|.+
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 678899999999999999999999999998854
No 306
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.62 E-value=0.0024 Score=49.40 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.+..|+|.|+-||||||+++.+++.+|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 56789999999999999999999999874
No 307
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.026 Score=50.66 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHh---CC-CeechhhhHHhh
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQE 101 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~---g~-~~is~~dllr~~ 101 (238)
..+|..|+++|..|+||||...+||..| |. +.+..+|-+|..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa 181 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA 181 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH
Confidence 3578999999999999999999999988 43 456677777753
No 308
>PRK13695 putative NTPase; Provisional
Probab=96.62 E-value=0.0018 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|+|+|+||+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999988765
No 309
>PRK05973 replicative DNA helicase; Provisional
Probab=96.60 E-value=0.003 Score=54.29 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=35.4
Q ss_pred hhhhccC--CCCcccccccCCCCCCCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechh
Q 026464 38 EECDLHG--QASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (238)
Q Consensus 38 ~~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~ 95 (238)
+++.+.. ....|.. +..+..+ ++-.++|.|+||+||||+|-.++... | +.++|.+
T Consensus 40 ~w~~~~~~~~~~~p~~--~l~GGl~-~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 40 SWSLLAAKAAATTPAE--ELFSQLK-PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred hHHHHHHhccCCCCHH--HhcCCCC-CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 5555432 2234544 2334444 77789999999999999999887644 4 3456543
No 310
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.60 E-value=0.0017 Score=52.24 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+..++|.|++|+|||++.+.+.+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999888776
No 311
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.58 E-value=0.0017 Score=55.51 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS 96 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~d 96 (238)
..++|.||||+|||++++.++.... +.+++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4689999999999999999998764 45666654
No 312
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.57 E-value=0.0058 Score=53.00 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh--CC-----CeechhhhHHhhcCCCChHHHHHHHHHHcCC-----CCChHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL--EV-----PHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPEDVIF 128 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~--g~-----~~is~~dllr~~~~~~s~~g~~i~~~l~~g~-----~vpd~~i~ 128 (238)
.....|+|.|++|+||||+|..+++.. .- ..++.+.- .....+...+...+.... ....+...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLGEPDSSISDPKDIEELQ 91 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccccccccccccccccccc
Confidence 466789999999999999999999772 21 12222110 011233344555554441 22334456
Q ss_pred HHHHHHHHcccccCCceEEEcCCcC
Q 026464 129 ALLSKRLEEGYYRGESGFILDGIPR 153 (238)
Q Consensus 129 ~ll~~~l~~~~~~~~~g~IlDGfPr 153 (238)
..+.+.+... ..-+|+|+.-.
T Consensus 92 ~~l~~~L~~~----~~LlVlDdv~~ 112 (287)
T PF00931_consen 92 DQLRELLKDK----RCLLVLDDVWD 112 (287)
T ss_dssp HHHHHHHCCT----SEEEEEEEE-S
T ss_pred ccchhhhccc----cceeeeeeecc
Confidence 6666666643 46789998643
No 313
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.57 E-value=0.0018 Score=62.04 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..+++|+||||+||||+++.|++.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHH
Confidence 55689999999999999999999876
No 314
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.57 E-value=0.0022 Score=57.80 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++.+|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988776
No 315
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.57 E-value=0.002 Score=64.37 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
++..++|.||||+||||+++.||+.++.+++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 44579999999999999999999999877654
No 316
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.57 E-value=0.0017 Score=60.24 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
=|+|.|+||+||||+|+.||+-|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999999987
No 317
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.0023 Score=60.29 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|.||||+||||+|+.+|+.++..
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4458999999999999999999998763
No 318
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0023 Score=63.56 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=27.8
Q ss_pred CCCCe-EEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 60 p~~~~-~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
+.+|. .++|+||||+|||++|+.||+.++.+.+
T Consensus 484 ~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 34554 6899999999999999999999987655
No 319
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.55 E-value=0.018 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..|+|+|-|.|||||.|+.|.+.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l 25 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREAL 25 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHH
Confidence 3568899999999999999999887
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.55 E-value=0.002 Score=53.57 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999887774
No 321
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.54 E-value=0.002 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~ 85 (238)
+|+|+|+||+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 322
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.53 E-value=0.00078 Score=61.18 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC--CCee--chhhhHHhhc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHI--SMGSLVRQEL 102 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g--~~~i--s~~dllr~~~ 102 (238)
.+..|+|.||||+|||.+|-.+|+++| +|++ +..++...++
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~ 93 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV 93 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence 467799999999999999999999997 5555 4455544433
No 323
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=0.0027 Score=61.87 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
..++.+|+||||.||||+|.-+|++-|+.++.+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 456788999999999999999999999988754
No 324
>PLN03025 replication factor C subunit; Provisional
Probab=96.51 E-value=0.0023 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
..++|.||||+||||++..+|+.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999873
No 325
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.49 E-value=0.0099 Score=52.98 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---CC--CeechhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~---g~--~~is~~dllr~ 100 (238)
.+.-++|.|+||+|||.++..|+..+ |. .++++.+++++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 34568999999999999999999887 43 45577777654
No 326
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.49 E-value=0.0026 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..|+|+||+||||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999766
No 327
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.49 E-value=0.0021 Score=68.42 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr 99 (238)
.|.-|+|+||||+|||.+|+.||.+.++|.|+ ..+++.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 34568999999999999999999999998765 466664
No 328
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.48 E-value=0.014 Score=56.57 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=29.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHh-------CCCeechhhhHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQ 100 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~-------g~~~is~~dllr~ 100 (238)
++|.|++|+|||.+++.++... .+.+++..+++.+
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e 358 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE 358 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 8899999999999999999865 3468888877754
No 329
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.48 E-value=0.048 Score=48.88 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.+..++|.||||+||||+++.+++.+...
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34568999999999999999999998654
No 330
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0023 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La 84 (238)
.++-+++|+||+||||||+.+-|-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 477889999999999999998875
No 331
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.002 Score=58.22 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.++-|++.||||+|||.+|+++|++-|..+|++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 456799999999999999999999998887764
No 332
>PRK13768 GTPase; Provisional
Probab=96.46 E-value=0.0027 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..+++.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 5689999999999999999999776
No 333
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.45 E-value=0.0029 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La 84 (238)
.+..++|.||+||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46779999999999999999987
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.43 E-value=0.0029 Score=54.88 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+|-|+||||+||||+...|.+.|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999999887
No 335
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.43 E-value=0.0062 Score=51.42 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
++..++|.|+||+||||++..++... ++.+++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 67889999999999999998876432 34455543
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.0028 Score=57.92 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..++|+||+|+||||++.+|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999764
No 337
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0068 Score=53.91 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCee--chhhhHHhhcCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSP 104 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~i--s~~dllr~~~~~ 104 (238)
.|+.+.|.||||.|||-+|+.+++..|+..+ +.+.++.+.+.+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 5677899999999999999999999988655 556666655443
No 338
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.41 E-value=0.0028 Score=50.53 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4678999999999999999999864
No 339
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.40 E-value=0.012 Score=54.29 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh-----C--CCeechhhhHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL-----E--VPHISMGSLVRQ 100 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~-----g--~~~is~~dllr~ 100 (238)
..++|.|+||+|||++++.++.++ + +.+++..+++.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 347899999999999999999875 2 456777766543
No 340
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.39 E-value=0.0033 Score=62.40 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=29.8
Q ss_pred CCCCe-EEEEEcCCCCCchHHHHHHHHHhCCCe--echhhh
Q 026464 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSL 97 (238)
Q Consensus 60 p~~~~-~i~l~G~PGSGKsT~a~~La~~~g~~~--is~~dl 97 (238)
|.+|. .++|+||||+|||++|+.||+.++.+. ++++++
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 45565 588999999999999999999997654 444443
No 341
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.026 Score=45.34 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=59.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---C-CCeechhhhHHhhcCCC-----ChHHHHHHHHHHcCCCCChHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E-VPHISMGSLVRQELSPR-----SALYKQIANAVNEGKLVPEDVIFALL 131 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g-~~~is~~dllr~~~~~~-----s~~g~~i~~~l~~g~~vpd~~i~~ll 131 (238)
.++..|.++|.+||||||+|-.|.+.+ | +.++=-||=+|.-++.. .+..+.|+. +.-+
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRR-------------igeV 95 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRR-------------IGEV 95 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHH-------------HHHH
Confidence 467778899999999999999999877 2 34444455555443321 011111111 1112
Q ss_pred HHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHH
Q 026464 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
.+-+... +.-.-.-+|.-|-....++..|..-+ ...-|++++|-++...|=
T Consensus 96 aKLFADa-g~iciaSlISPYR~dRdacRel~~~~-~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 96 AKLFADA-GVICIASLISPYRKDRDACRELLPEG-DFIEVFMDVPLEVCEARD 146 (207)
T ss_pred HHHHhcc-ceeeeehhcCchhccHHHHHHhccCC-CeEEEEecCcHHHhhccC
Confidence 2222221 11011122333445566666664433 446789999999887664
No 342
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.39 E-value=0.0029 Score=51.99 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+..++|+|++||||||+.+.|+..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 566799999999999999999987653
No 343
>PF13479 AAA_24: AAA domain
Probab=96.39 E-value=0.0021 Score=54.09 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~ 95 (238)
++.+++|.|+||+||||+|..+ -+..+|+++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E 32 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTE 32 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence 5788999999999999999887 333455543
No 344
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.39 E-value=0.0099 Score=55.60 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-------CCCeechhhhHHhh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQE 101 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~-------g~~~is~~dllr~~ 101 (238)
-++|.||||+|||++++.++.++ .+.+++..+++.+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 48999999999999999999874 34677777766543
No 345
>PRK06921 hypothetical protein; Provisional
Probab=96.39 E-value=0.0049 Score=53.84 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh----CC--CeechhhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL----EV--PHISMGSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~----g~--~~is~~dllr 99 (238)
....++|.|+||+|||+++..+++.+ |. .+++..+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 34568999999999999999999865 33 3555555544
No 346
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.38 E-value=0.0041 Score=51.67 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGS 96 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~d 96 (238)
++..+.|.|+||||||++|..++... .+.+|+++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 77889999999999999999988654 356666654
No 347
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.38 E-value=0.0032 Score=62.93 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
++..++|+||||+||||+++.+++.++.+++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45679999999999999999999999987753
No 348
>PHA03135 thymidine kinase; Provisional
Probab=96.37 E-value=0.26 Score=44.46 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+-++|.|-|+.|+||||+++.+++.
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999999999999985
No 349
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.37 E-value=0.013 Score=54.82 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh-----C--CCeechhhhHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL-----E--VPHISMGSLVRQ 100 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~-----g--~~~is~~dllr~ 100 (238)
-++|.||||+|||++++.++.++ + +.+++..+++.+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 48899999999999999999886 2 346777666543
No 350
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.37 E-value=0.0037 Score=55.36 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
.+..+++.||||+||||+++.+++.++..+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 345666789999999999999999886543
No 351
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.35 E-value=0.0025 Score=53.55 Aligned_cols=25 Identities=44% Similarity=0.711 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..++|+||||+|||++|+++..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999998764
No 352
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.34 E-value=0.0037 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
+..+.|+|++||||||+++.|...+.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999874
No 353
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.34 E-value=0.0035 Score=49.45 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999998876
No 354
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.33 E-value=0.0037 Score=61.84 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
+...++|.||||+||||+++.+++..+..++.+..
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 33467899999999999999999998876665543
No 355
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.33 E-value=0.0028 Score=51.29 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=28.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC-CCeechhhh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLE-VPHISMGSL 97 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g-~~~is~~dl 97 (238)
++=++.+|+||||++..|++-|| +.||.-|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 34478999999999999999999 999988876
No 356
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.33 E-value=0.0032 Score=56.45 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
+..++|.|+||+|||++++.+|+.++.+++.
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 3448899999999999999999999876553
No 357
>PRK04296 thymidine kinase; Provisional
Probab=96.31 E-value=0.0036 Score=51.78 Aligned_cols=25 Identities=8% Similarity=-0.171 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..++++|+||+||||.+-.++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999998876
No 358
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.31 E-value=0.0066 Score=57.43 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
+..| ++..++|.|+|||||||+|..++-
T Consensus 16 GGlp-~g~~~Li~G~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 16 GGLP-IGRSTLVSGTSGTGKTLFSIQFLY 43 (484)
T ss_pred CCCC-CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4445 788899999999999999998843
No 359
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.30 E-value=0.0042 Score=53.10 Aligned_cols=129 Identities=13% Similarity=0.022 Sum_probs=69.3
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHh---hcCC-CChHHH-HH------HH-HHHcCCC--CChH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ---ELSP-RSALYK-QI------AN-AVNEGKL--VPED 125 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~---~~~~-~s~~g~-~i------~~-~l~~g~~--vpd~ 125 (238)
+.....+-+.|+||+||||+|..+++.++...-+.+.-.-. .++. +-++.. ++ ++ ....|.. ....
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 45667789999999999999999998765432211110000 0000 111110 00 00 0112321 2233
Q ss_pred HHHHHHHHHHH---cc------------------cc--cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHH
Q 026464 126 VIFALLSKRLE---EG------------------YY--RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVK 182 (238)
Q Consensus 126 ~i~~ll~~~l~---~~------------------~~--~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~ 182 (238)
+..++++ .|+ .. .| ..+.-+|++|...-.+|-.+=+-....|--.++++.-++..+
T Consensus 196 lfl~l~k-~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 196 LFLQLCK-ILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHH-HHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 4444432 122 11 01 235667888876655554443333344566899999999999
Q ss_pred HHhcCCC
Q 026464 183 RNLESEA 189 (238)
Q Consensus 183 Rl~~R~~ 189 (238)
|+.+|..
T Consensus 275 RVa~RHl 281 (323)
T KOG2702|consen 275 RVAKRHL 281 (323)
T ss_pred HHHHHhh
Confidence 9999875
No 360
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.30 E-value=0.0039 Score=52.06 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
..+..|.|+|++||||||+.+.+.+.++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998864
No 361
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.29 E-value=0.005 Score=51.57 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
++..+.|.|+|||||||+|..++... .+.+++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67889999999999999999999765 34466554
No 362
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.28 E-value=0.0034 Score=49.46 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~ 85 (238)
+|+|+|+|||||||+.+++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999874
No 363
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.28 E-value=0.0038 Score=59.12 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
+..+.+|+||+|+||||..+.|++++|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 3457889999999999999999999998765
No 364
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0028 Score=58.69 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=26.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+|.||||+||||...++|..+++-+.++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 78999999999999999999998876654
No 365
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.28 E-value=0.0041 Score=55.10 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|.|+|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998865
No 366
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.0038 Score=59.34 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
.+..++|.||||+||||+|+.+|+.+++.+
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 345799999999999999999999998754
No 367
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.27 E-value=0.004 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+.|-|.||||||||++...+.+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRAL 37 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3789999999999999988877665
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.26 E-value=0.0031 Score=48.61 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-++.|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56789999999999999999998665
No 369
>COG4240 Predicted kinase [General function prediction only]
Probab=96.25 E-value=0.0046 Score=52.81 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---C---CCeechhhhHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E---VPHISMGSLVR 99 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g---~~~is~~dllr 99 (238)
++|.++.|+||-||||||++..|-..+ | ...+|+||+.-
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 579999999999999999998876654 3 35678888653
No 370
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.012 Score=52.10 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHHhhcCCCChHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSALYKQI 112 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~s~~g~~i 112 (238)
.|.-+++.|+||+|||-+|+.+|......++. -.+|+++++-.+..+-.++
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRql 270 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVREL 270 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHH
Confidence 34558899999999999999999887655543 3567777666655544443
No 371
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.25 E-value=0.0026 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
..+..++|+|+||+||||+|+.|+.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3467799999999999999999974
No 372
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.25 E-value=0.0045 Score=43.90 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=25.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCeechh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMG 95 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~---g~~~is~~ 95 (238)
+++.|.+|+||||++..|+..+ |...+-++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6789999999999999999887 66665555
No 373
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.24 E-value=0.0035 Score=58.55 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+..++|.||||+||||+|+.|+..++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999999999874
No 374
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.23 E-value=0.004 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+|+|.||+||||+..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999853
No 375
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.23 E-value=0.0065 Score=57.73 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCC-----Ch---
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV-----PE--- 124 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v-----pd--- 124 (238)
..| ++..++|.|+||+|||+++..++... .+.+++..+-..+....-..+|-.+.++..+|.+. |.
T Consensus 269 G~~-~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 269 GFF-RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CCC-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCC
Confidence 344 57788899999999999999887553 45566553322111111112222334444444421 21
Q ss_pred -HHHHHHHHHHHHcccccCCceEEEcCC
Q 026464 125 -DVIFALLSKRLEEGYYRGESGFILDGI 151 (238)
Q Consensus 125 -~~i~~ll~~~l~~~~~~~~~g~IlDGf 151 (238)
+.....+...+.+. ...-+|||++
T Consensus 348 ~~~~~~~i~~~i~~~---~~~~vVIDsl 372 (509)
T PRK09302 348 LEDHLIIIKREIEEF---KPSRVAIDPL 372 (509)
T ss_pred HHHHHHHHHHHHHHc---CCCEEEEcCH
Confidence 22333444455542 2467899975
No 376
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.0047 Score=58.18 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|.||||+||||+|+.||+.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4458999999999999999999999874
No 377
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.20 E-value=0.0039 Score=48.94 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+|+|+||+||||+..++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 378
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.19 E-value=0.0053 Score=53.73 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHHHhC---C--CeechhhhHHh
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLE---V--PHISMGSLVRQ 100 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~g---~--~~is~~dllr~ 100 (238)
+..+.+|..|+++|..||||||.+++|-.++. . -.|+++--++.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 44567899999999999999999999998872 2 24566655554
No 379
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.19 E-value=0.0041 Score=51.84 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 380
>PTZ00202 tuzin; Provisional
Probab=96.19 E-value=0.023 Score=53.22 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.+.+++|+|++|+||||+++.+....+.+
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~ 313 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMP 313 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence 34589999999999999999999888754
No 381
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.19 E-value=0.004 Score=56.08 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (238)
..++|.|+||+|||+++..+|+.+ .+.++++.+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 569999999999999999999876 4567777777654
No 382
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.18 E-value=0.0042 Score=50.92 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998544
No 383
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.0041 Score=59.10 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
.+..|+|.||||+||||+++.+++.+.+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4556899999999999999999999865
No 384
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.18 E-value=0.004 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+++|+|||||||+.+++...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999743
No 385
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.18 E-value=0.042 Score=55.25 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+.-++|.|++|+||||+++.|++.+++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4458899999999999999999999874
No 386
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.17 E-value=0.0064 Score=51.23 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
.++..+.|.|+||+|||++|..++... ++.+++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 378889999999999999999998643 35566665
No 387
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.16 E-value=0.0042 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+.|+|++||||||++..|.+.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999876
No 388
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0072 Score=52.84 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcCCCCh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSA 107 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~s~ 107 (238)
.|+-|++.||||+|||..|+.+|.+.+..+|.+ ++|+++.+..+..
T Consensus 210 ppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegar 257 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGAR 257 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHH
Confidence 456689999999999999999999998877754 5667666554433
No 389
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.09 Score=48.54 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.+.-++|.||||+||||+|..+|+.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45669999999999999999999998765
No 390
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.16 E-value=0.0044 Score=51.86 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 367789999999999999999998654
No 391
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.15 E-value=0.0045 Score=52.78 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.++-.+.|+||+||||||+-..|+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4778899999999999999998874
No 392
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.15 E-value=0.0044 Score=60.68 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
-++|.||||+||||+++.++.+++++++.+
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 499999999999999999999999987765
No 393
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.14 E-value=0.0044 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68899999999997666666554
No 394
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.13 E-value=0.0046 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+.+|+++|++|+||||+...|...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999998753
No 395
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.12 E-value=0.0049 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+|+|+|.||+||||+..++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 396
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.12 E-value=0.0046 Score=51.69 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 397
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.12 E-value=0.0048 Score=51.41 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999999654
No 398
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.11 E-value=0.006 Score=61.52 Aligned_cols=42 Identities=31% Similarity=0.497 Sum_probs=32.7
Q ss_pred CCCCCe-EEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHHh
Q 026464 59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (238)
Q Consensus 59 ~p~~~~-~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr~ 100 (238)
.|.+|. .++|+||||+|||.+|+.||+.+ .+..+++.++...
T Consensus 591 ~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 456666 58999999999999999999987 2456777665543
No 399
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.11 E-value=0.02 Score=52.98 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..|.+|.++|--||||||.|..||..|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~l 124 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYL 124 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHH
Confidence 4578899999999999999999999877
No 400
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.10 E-value=0.0054 Score=53.11 Aligned_cols=29 Identities=10% Similarity=0.292 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
.++-+++|+|++|+||||+++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 37889999999999999999999987754
No 401
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.10 E-value=0.0051 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+|+++|.+||||||+...|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999887543
No 402
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.09 E-value=0.0051 Score=51.21 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 403
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.09 E-value=0.004 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~ 85 (238)
+|+|+|++||||||+...+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 404
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.08 E-value=0.005 Score=51.58 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 405
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.08 E-value=0.005 Score=51.35 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 406
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.08 E-value=0.0053 Score=56.05 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+|..|.|+|++||||||+++.|.+++.-.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 78899999999999999999999988643
No 407
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.07 E-value=0.0058 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+.+++|+|++||||||++..|-..+
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999887665
No 408
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.07 E-value=0.0051 Score=50.95 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|++||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 409
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.06 E-value=0.0046 Score=47.62 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+++|+|||||||+...+...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999988643
No 410
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.06 E-value=0.005 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+|+|+|+||+||||+.+.|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999864
No 411
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.03 Score=48.65 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=39.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCee--chhhhHHhhcCCCChH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSPRSAL 108 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~i--s~~dllr~~~~~~s~~ 108 (238)
..|.-+++.||||.|||.+++.+|.+..+.+| |-.+++++.+..++..
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrm 228 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRM 228 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHH
Confidence 35677999999999999999999998877655 5678888887766653
No 412
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.05 E-value=0.0053 Score=51.44 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999998554
No 413
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0048 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+ ++.|+|+.||||||+.+.|+..+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 36 89999999999999999998543
No 414
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.05 E-value=0.0049 Score=52.24 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 367789999999999999999998544
No 415
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.05 E-value=0.0052 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
++|+++|++||||||+.+.|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999754
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0053 Score=52.08 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 417
>PHA02624 large T antigen; Provisional
Probab=96.05 E-value=0.0071 Score=58.32 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~ 95 (238)
+...|+|.||||+||||++..|.+.+|-..+++.
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 4568999999999999999999999966667653
No 418
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.04 E-value=0.0055 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998644
No 419
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.03 E-value=0.0053 Score=48.08 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q 026464 65 QWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~ 85 (238)
+|+++|+|||||||+..++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 420
>PRK05642 DNA replication initiation factor; Validated
Probab=96.03 E-value=0.0061 Score=52.11 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhhHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR 99 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dllr 99 (238)
..++|.|++|+|||++++.++.++ .+.+++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 457899999999999999998643 566888887765
No 421
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0057 Score=50.93 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998643
No 422
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.02 E-value=0.0057 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.++-.|.|+||+|+||||+-+.+|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 56778999999999999999999864
No 423
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.02 E-value=0.0059 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+++.+|-|+|+||+||||+...|..+|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 477899999999999999999999988
No 424
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0055 Score=52.03 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999998654
No 425
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0056 Score=51.80 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998665
No 426
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.0058 Score=51.00 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 427
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.0062 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++.+|+|+||+||||||.+..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999776
No 428
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.006 Score=49.63 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998544
No 429
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.00 E-value=0.0043 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=20.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999885
No 430
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.00 E-value=0.0059 Score=50.36 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-++.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998754
No 431
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.00 E-value=0.072 Score=43.52 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
-+..++|.||||+||||+++.+++.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3467999999999999999999998754
No 432
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.99 E-value=0.0059 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 433
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.0059 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 434
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.98 E-value=0.0051 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+++|+++|.||+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 578999999999999999999754
No 435
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.97 E-value=0.0061 Score=51.35 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 367789999999999999999999765
No 436
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.97 E-value=0.006 Score=51.93 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 367789999999999999999998654
No 437
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.97 E-value=0.0068 Score=53.82 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSL 97 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~dl 97 (238)
...|+|.|++||||||+.+.|.... +...+.+.|-
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 4568899999999999999999876 2345555543
No 438
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.96 E-value=0.0064 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+|+.||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 67789999999999999999998654
No 439
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.96 E-value=0.006 Score=50.65 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+||.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 440
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.0064 Score=57.55 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+.-++|.||||+||||+|+.+|+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4569999999999999999999988764
No 441
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.96 E-value=0.0059 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999998654
No 442
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.95 E-value=0.004 Score=53.86 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeech
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISM 94 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~ 94 (238)
..| ++..++|.|+||||||+++..++... | +.+|++
T Consensus 19 G~p-~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 19 GLP-RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred CCc-CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 344 77789999999999999999888654 3 445554
No 443
>PRK10646 ADP-binding protein; Provisional
Probab=95.95 E-value=0.0091 Score=47.90 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.+..|+|.|.-|+||||+++.|++.+|+.
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45679999999999999999999999873
No 444
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.008 Score=58.64 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|.||||+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999874
No 445
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.0063 Score=51.61 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 366789999999999999999998654
No 446
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.95 E-value=0.0065 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477889999999999999999998654
No 447
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.94 E-value=0.0056 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+++|+|||||||+..++...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988654
No 448
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.006 Score=51.22 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 449
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.93 E-value=0.007 Score=52.55 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=28.7
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
+..| ++..++|.|+||+||||+|..++... .+.++|+.
T Consensus 31 GGip-~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIP-AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeE-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3444 67889999999999999999987643 34566653
No 450
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.0078 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
+..++|.||||+||||+|+.+|+.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345789999999999999999999875
No 451
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.93 E-value=0.0065 Score=51.63 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467889999999999999999998654
No 452
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.93 E-value=0.0065 Score=51.31 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 453
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.0078 Score=55.49 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+.-++|.||||+||||+|..+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4458899999999999999999999774
No 454
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.92 E-value=0.0061 Score=52.27 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999999765
No 455
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.92 E-value=0.007 Score=53.11 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..|.|+|++||||||++..|+..+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988
No 456
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.92 E-value=0.007 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
..+|+++|++|+||||+..++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999864
No 457
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.92 E-value=0.0069 Score=48.82 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 458
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.0067 Score=60.90 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+..++|.||||+||||+|+.||+.+++.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4557899999999999999999999875
No 459
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0067 Score=50.91 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 460
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0069 Score=49.03 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 461
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.91 E-value=0.037 Score=50.68 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=47.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
.++|.||+||||||....|.+.++ ...+.++|-+...+..........+. +-|... ......++..|..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~--evg~~~--~~~~~~l~~aLR~-- 224 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQS--QIGRDV--DSFANGIRLALRR-- 224 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccc--ccCCCc--cCHHHHHHHhhcc--
Confidence 578899999999999999988763 34566665544332211111000000 001111 1234455555543
Q ss_pred ccCCceEEEcCCcCCHHHHHH
Q 026464 140 YRGESGFILDGIPRTRIQAEI 160 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~ 160 (238)
.-.+|+-|--|+.+-++.
T Consensus 225 ---~PD~I~vGEiRd~et~~~ 242 (372)
T TIGR02525 225 ---APKIIGVGEIRDLETFQA 242 (372)
T ss_pred ---CCCEEeeCCCCCHHHHHH
Confidence 245777787777766654
No 462
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.91 E-value=0.0066 Score=51.92 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 463
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.91 E-value=0.0062 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|++||||||+.+.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999999764
No 464
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.91 E-value=0.0071 Score=49.30 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 465
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0067 Score=50.02 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
..+-++.|+|++||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3677899999999999999999985
No 466
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.90 E-value=0.0065 Score=51.29 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999654
No 467
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.90 E-value=0.0061 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 367789999999999999999998654
No 468
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.90 E-value=0.0068 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 367789999999999999999998643
No 469
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.064 Score=51.94 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
-+..++|.||+|+||||+|+.||+.+++.
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34557899999999999999999999864
No 470
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.89 E-value=0.0083 Score=53.03 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.....+-|+|+|||||||+.+.+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998876
No 471
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.89 E-value=0.008 Score=60.70 Aligned_cols=41 Identities=22% Similarity=0.497 Sum_probs=30.3
Q ss_pred CCCCCe-EEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHH
Q 026464 59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (238)
Q Consensus 59 ~p~~~~-~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr 99 (238)
.|.+|. .++|+||||+|||++|+.|++.+. +..+++.++..
T Consensus 593 ~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 593 DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 345554 688999999999999999998762 34456655543
No 472
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.89 E-value=0.0067 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-++.|+|+.||||||+.+.|+..+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67789999999999999999999654
No 473
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.0068 Score=51.74 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+|+.||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999754
No 474
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=95.88 E-value=0.0079 Score=47.20 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+++|+||+||||+..++...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Confidence 368999999999999999988754
No 475
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.0067 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+-.++|+||+||||||+-+.||-
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 556799999999999999999984
No 476
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.88 E-value=0.0075 Score=48.81 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467789999999999999999998654
No 477
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.87 E-value=0.007 Score=49.40 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998665
No 478
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.0075 Score=56.95 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++.++.|+||.|+||||.+.+||..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 479
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.0072 Score=52.00 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+-.+.|+||+|+||||+-+.+|--
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999853
No 480
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.86 E-value=0.0075 Score=50.89 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
..+-++.|+|++||||||+.+.|+..+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 3677899999999999999999986543
No 481
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.86 E-value=0.0071 Score=51.05 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-++.|+|++||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999754
No 482
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.86 E-value=0.0069 Score=51.96 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 367789999999999999999999653
No 483
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.86 E-value=0.0068 Score=54.94 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
++-.+.|+||+||||||+-+.||--
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5667899999999999999999853
No 484
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.078 Score=47.74 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+.+.-++|.||+|+||+|+|..+|+.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 345669999999999999999999998764
No 485
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.86 E-value=0.0075 Score=50.13 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467889999999999999999998543
No 486
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.85 E-value=0.014 Score=55.44 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
+..| ++-.++|.|+||+||||+|..++.
T Consensus 26 GG~p-~Gs~~li~G~pGsGKT~l~~qf~~ 53 (509)
T PRK09302 26 GGLP-KGRPTLVSGTAGTGKTLFALQFLV 53 (509)
T ss_pred CCCC-CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4455 678899999999999999998764
No 487
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.85 E-value=0.0072 Score=48.57 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+|+|.||+||||+.+.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999988743
No 488
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.85 E-value=0.0072 Score=51.38 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+-.+.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36778999999999999999999865
No 489
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.0089 Score=57.18 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.+..++|.||||+||||+|+.+++.+++.
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34558899999999999999999999874
No 490
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0072 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-++.|+|++||||||+.+.|+..+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 367789999999999999999999664
No 491
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.84 E-value=0.0081 Score=48.79 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
+..+|+|+|++||||||+...+..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 567789999999999999999875
No 492
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.008 Score=48.57 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|++||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 367789999999999999999998765
No 493
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.011 Score=58.55 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=36.1
Q ss_pred CCCCCCe-EEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhh
Q 026464 58 SPPRRGV-QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQE 101 (238)
Q Consensus 58 ~~p~~~~-~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~ 101 (238)
..|++|. .++|+||.|+|||-+|+.||+.+. +..|+|+++..++
T Consensus 515 ~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 515 GDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred CCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 4456776 677799999999999999999874 6788888887764
No 494
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.84 E-value=0.0073 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 495
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.83 E-value=0.0076 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+|+|.|||||||+.+++.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998743
No 496
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.0071 Score=57.60 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.|.++.++||||+||||+.+.|..+|-
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 567777999999999999999998873
No 497
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.83 E-value=0.0081 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+++|++||||||+...|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 5778999999999999999999974
No 498
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.0074 Score=51.66 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 367789999999999999999999764
No 499
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.0073 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 500
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.0075 Score=51.37 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
Done!