Query 026464
Match_columns 238
No_of_seqs 207 out of 1709
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 5.1E-43 1.8E-47 293.1 16.3 166 64-234 1-179 (206)
2 3gmt_A Adenylate kinase; ssgci 100.0 1.8E-40 6.2E-45 281.3 18.9 170 62-233 7-192 (230)
3 3umf_A Adenylate kinase; rossm 100.0 2.5E-39 8.5E-44 272.7 19.2 161 61-234 27-188 (217)
4 3tlx_A Adenylate kinase 2; str 100.0 4.4E-34 1.5E-38 243.9 18.7 172 61-234 27-218 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 3.5E-32 1.2E-36 226.7 17.1 169 64-234 1-189 (216)
6 3fb4_A Adenylate kinase; psych 100.0 1.6E-31 5.5E-36 222.5 17.7 169 64-234 1-189 (216)
7 3be4_A Adenylate kinase; malar 100.0 6.7E-31 2.3E-35 219.9 16.3 170 62-233 4-193 (217)
8 1ak2_A Adenylate kinase isoenz 100.0 2.9E-30 9.8E-35 218.3 19.6 173 59-233 12-204 (233)
9 1aky_A Adenylate kinase; ATP:A 100.0 4.3E-30 1.5E-34 215.0 19.2 170 62-233 3-193 (220)
10 1e4v_A Adenylate kinase; trans 100.0 2.7E-30 9.3E-35 215.5 15.3 168 64-233 1-184 (214)
11 2xb4_A Adenylate kinase; ATP-b 100.0 2.9E-29 1E-33 211.1 16.1 167 64-233 1-193 (223)
12 1zd8_A GTP:AMP phosphotransfer 100.0 1.2E-28 4E-33 207.3 17.7 169 62-233 6-189 (227)
13 1zak_A Adenylate kinase; ATP:A 100.0 2.3E-28 7.9E-33 204.7 15.5 172 62-234 4-187 (222)
14 2cdn_A Adenylate kinase; phosp 99.9 2.1E-25 7.2E-30 183.8 16.5 156 60-233 17-177 (201)
15 2c95_A Adenylate kinase 1; tra 99.9 2.3E-24 7.8E-29 175.8 17.8 159 62-233 8-167 (196)
16 1ukz_A Uridylate kinase; trans 99.9 1.5E-24 5.1E-29 178.6 15.9 162 60-233 12-175 (203)
17 2bwj_A Adenylate kinase 5; pho 99.9 4E-24 1.4E-28 174.8 16.9 159 62-233 11-170 (199)
18 3cm0_A Adenylate kinase; ATP-b 99.9 3.9E-24 1.3E-28 173.4 15.6 153 62-233 3-160 (186)
19 1qf9_A UMP/CMP kinase, protein 99.9 1.1E-23 3.7E-28 170.9 17.8 157 62-233 5-165 (194)
20 1tev_A UMP-CMP kinase; ploop, 99.9 1.1E-23 3.7E-28 171.1 16.5 161 62-234 2-169 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.9 2E-21 6.7E-26 165.1 19.3 171 61-234 25-210 (246)
22 3lw7_A Adenylate kinase relate 99.7 5.7E-17 2E-21 128.5 13.4 118 64-189 2-124 (179)
23 1ly1_A Polynucleotide kinase; 99.6 4E-15 1.4E-19 118.9 15.0 140 63-223 2-146 (181)
24 2pbr_A DTMP kinase, thymidylat 99.6 8.3E-15 2.9E-19 118.4 15.9 114 64-188 1-144 (195)
25 4eaq_A DTMP kinase, thymidylat 99.6 8.5E-15 2.9E-19 123.5 13.4 125 60-188 23-170 (229)
26 1ltq_A Polynucleotide kinase; 99.6 2.8E-15 9.5E-20 130.2 7.7 141 63-224 2-147 (301)
27 1kht_A Adenylate kinase; phosp 99.6 3.1E-14 1.1E-18 114.8 12.6 117 63-186 3-135 (192)
28 3vaa_A Shikimate kinase, SK; s 99.6 1.6E-14 5.4E-19 118.5 10.8 139 61-226 23-166 (199)
29 3t61_A Gluconokinase; PSI-biol 99.6 5.8E-14 2E-18 115.1 14.2 116 62-189 17-133 (202)
30 2z0h_A DTMP kinase, thymidylat 99.5 3.3E-13 1.1E-17 109.4 15.9 117 64-188 1-143 (197)
31 1nks_A Adenylate kinase; therm 99.5 8.9E-14 3.1E-18 112.1 12.0 120 63-188 1-140 (194)
32 2wwf_A Thymidilate kinase, put 99.5 9.3E-15 3.2E-19 120.1 5.8 123 62-187 9-151 (212)
33 2rhm_A Putative kinase; P-loop 99.5 5.4E-14 1.8E-18 113.7 8.2 118 61-188 3-126 (193)
34 2v54_A DTMP kinase, thymidylat 99.5 2.4E-13 8.1E-18 111.0 11.9 114 62-182 3-137 (204)
35 1y63_A LMAJ004144AAA protein; 99.5 1.9E-13 6.5E-18 110.8 9.4 112 61-189 8-123 (184)
36 2iyv_A Shikimate kinase, SK; t 99.5 6E-13 2.1E-17 107.2 11.8 110 64-188 3-115 (184)
37 2pt5_A Shikimate kinase, SK; a 99.4 2.5E-13 8.5E-18 107.7 9.2 110 64-188 1-114 (168)
38 1nn5_A Similar to deoxythymidy 99.4 5.7E-13 1.9E-17 109.5 11.1 119 62-187 8-150 (215)
39 1jjv_A Dephospho-COA kinase; P 99.4 1.7E-12 5.7E-17 106.6 13.7 120 63-188 2-145 (206)
40 2plr_A DTMP kinase, probable t 99.4 9.1E-13 3.1E-17 107.8 11.9 116 62-188 3-144 (213)
41 1e6c_A Shikimate kinase; phosp 99.4 5.2E-12 1.8E-16 100.3 16.0 110 63-187 2-116 (173)
42 1vht_A Dephospho-COA kinase; s 99.4 7.7E-13 2.6E-17 109.6 11.4 122 62-188 3-147 (218)
43 3trf_A Shikimate kinase, SK; a 99.4 1.8E-12 6.2E-17 104.4 13.2 109 63-184 5-115 (185)
44 1zuh_A Shikimate kinase; alpha 99.4 1.9E-13 6.6E-18 108.7 7.3 108 62-188 6-118 (168)
45 3kb2_A SPBC2 prophage-derived 99.4 4.4E-12 1.5E-16 100.4 13.9 99 64-188 2-116 (173)
46 1cke_A CK, MSSA, protein (cyti 99.4 3.1E-13 1.1E-17 112.2 7.3 116 63-184 5-158 (227)
47 3v9p_A DTMP kinase, thymidylat 99.4 4.3E-13 1.5E-17 113.1 8.2 125 61-188 23-173 (227)
48 2vli_A Antibiotic resistance p 99.4 3.4E-12 1.2E-16 102.3 12.5 114 61-188 3-126 (183)
49 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 1.5E-12 5E-17 111.5 10.7 110 62-188 3-121 (260)
50 2f6r_A COA synthase, bifunctio 99.4 1.5E-12 5.1E-17 112.9 10.3 124 59-188 71-221 (281)
51 4edh_A DTMP kinase, thymidylat 99.4 1.8E-11 6.3E-16 102.1 16.5 119 62-188 5-153 (213)
52 4eun_A Thermoresistant glucoki 99.4 7E-12 2.4E-16 102.7 13.6 119 62-191 28-149 (200)
53 3iij_A Coilin-interacting nucl 99.4 2.7E-13 9.3E-18 109.0 4.2 110 62-189 10-119 (180)
54 3lv8_A DTMP kinase, thymidylat 99.4 1E-11 3.5E-16 105.3 13.9 121 61-188 25-176 (236)
55 1knq_A Gluconate kinase; ALFA/ 99.3 2.6E-11 8.9E-16 96.7 14.8 114 62-188 7-125 (175)
56 3nwj_A ATSK2; P loop, shikimat 99.3 5.3E-12 1.8E-16 107.9 11.4 112 63-187 48-162 (250)
57 4hlc_A DTMP kinase, thymidylat 99.3 7.5E-11 2.6E-15 97.7 17.7 116 63-189 2-147 (205)
58 1via_A Shikimate kinase; struc 99.3 3E-13 1E-17 108.4 2.9 108 63-187 4-113 (175)
59 2qor_A Guanylate kinase; phosp 99.3 3.4E-12 1.2E-16 104.9 8.7 140 61-226 10-168 (204)
60 4tmk_A Protein (thymidylate ki 99.3 2.5E-11 8.7E-16 101.3 14.0 120 62-188 2-154 (213)
61 2if2_A Dephospho-COA kinase; a 99.3 4.3E-12 1.5E-16 103.8 7.8 117 64-188 2-145 (204)
62 1gvn_B Zeta; postsegregational 99.3 1.3E-11 4.3E-16 107.4 10.5 144 61-224 31-192 (287)
63 2p5t_B PEZT; postsegregational 99.3 5.3E-12 1.8E-16 107.5 7.8 116 61-188 30-158 (253)
64 3zvl_A Bifunctional polynucleo 99.3 2.7E-11 9.4E-16 110.5 12.7 101 60-189 255-359 (416)
65 1uf9_A TT1252 protein; P-loop, 99.2 1.8E-11 6.3E-16 99.5 9.0 120 59-188 4-146 (203)
66 4i1u_A Dephospho-COA kinase; s 99.2 3.3E-11 1.1E-15 100.4 10.6 122 62-188 8-153 (210)
67 1uj2_A Uridine-cytidine kinase 99.2 3.7E-11 1.3E-15 102.0 10.1 117 61-188 20-172 (252)
68 1kag_A SKI, shikimate kinase I 99.2 3.2E-11 1.1E-15 95.8 8.1 113 62-188 3-118 (173)
69 1q3t_A Cytidylate kinase; nucl 99.2 2.7E-10 9.3E-15 95.6 13.9 117 60-184 13-170 (236)
70 3ake_A Cytidylate kinase; CMP 99.2 3.4E-10 1.2E-14 92.2 13.1 114 65-188 4-157 (208)
71 3ld9_A DTMP kinase, thymidylat 99.2 3.9E-10 1.3E-14 94.7 13.3 117 61-184 19-163 (223)
72 2h92_A Cytidylate kinase; ross 99.1 8.8E-11 3E-15 97.0 8.1 38 63-100 3-40 (219)
73 2grj_A Dephospho-COA kinase; T 99.1 1.5E-10 5E-15 95.1 8.5 116 62-185 11-148 (192)
74 1qhx_A CPT, protein (chloramph 99.1 9.4E-10 3.2E-14 87.6 13.1 118 63-189 3-135 (178)
75 2jaq_A Deoxyguanosine kinase; 99.1 1.1E-10 3.8E-15 94.7 6.5 30 64-93 1-30 (205)
76 3hjn_A DTMP kinase, thymidylat 99.1 7.7E-09 2.6E-13 85.0 17.2 113 64-187 1-142 (197)
77 3fdi_A Uncharacterized protein 99.1 1.4E-09 4.9E-14 89.6 12.6 118 63-187 6-137 (201)
78 3hdt_A Putative kinase; struct 99.0 2.9E-09 1E-13 89.3 12.4 40 62-102 13-52 (223)
79 3tmk_A Thymidylate kinase; pho 99.0 1.7E-09 5.6E-14 90.4 10.6 115 62-186 4-146 (216)
80 2yvu_A Probable adenylyl-sulfa 99.0 2.5E-09 8.6E-14 86.1 10.9 107 61-185 11-131 (186)
81 2axn_A 6-phosphofructo-2-kinas 99.0 1.7E-09 5.7E-14 101.4 11.3 153 61-228 33-202 (520)
82 4e22_A Cytidylate kinase; P-lo 99.0 6.5E-09 2.2E-13 88.3 13.8 40 61-100 25-64 (252)
83 2pez_A Bifunctional 3'-phospho 99.0 2.9E-09 9.8E-14 85.3 10.6 109 61-187 3-125 (179)
84 1m7g_A Adenylylsulfate kinase; 99.0 2.5E-09 8.6E-14 88.1 9.8 109 61-184 23-149 (211)
85 2qt1_A Nicotinamide riboside k 98.9 2.4E-09 8.2E-14 87.7 8.9 115 61-188 19-151 (207)
86 1gtv_A TMK, thymidylate kinase 98.9 1.7E-10 5.7E-15 94.6 -0.2 123 64-189 1-155 (214)
87 3tr0_A Guanylate kinase, GMP k 98.9 4.2E-09 1.4E-13 85.6 7.4 121 62-189 6-141 (205)
88 2ze6_A Isopentenyl transferase 98.8 7.9E-09 2.7E-13 87.9 9.0 120 64-188 2-139 (253)
89 1ex7_A Guanylate kinase; subst 98.8 1.3E-08 4.6E-13 83.0 9.8 134 66-225 4-155 (186)
90 3uie_A Adenylyl-sulfate kinase 98.8 3E-08 1E-12 80.9 11.7 105 61-184 23-140 (200)
91 3r20_A Cytidylate kinase; stru 98.8 2.7E-08 9.4E-13 83.9 11.7 41 61-101 7-47 (233)
92 3tau_A Guanylate kinase, GMP k 98.8 2E-09 6.8E-14 88.7 4.3 137 62-224 7-160 (208)
93 2j41_A Guanylate kinase; GMP, 98.8 3.6E-09 1.2E-13 86.0 5.4 119 62-189 5-141 (207)
94 1x6v_B Bifunctional 3'-phospho 98.8 3.1E-08 1E-12 94.5 12.3 112 61-185 50-170 (630)
95 1p5z_B DCK, deoxycytidine kina 98.8 4.9E-09 1.7E-13 89.3 5.7 33 61-93 22-55 (263)
96 1a7j_A Phosphoribulokinase; tr 98.7 3.6E-08 1.2E-12 85.7 7.3 38 62-99 4-46 (290)
97 2bdt_A BH3686; alpha-beta prot 98.6 1.4E-07 4.7E-12 75.9 9.5 110 63-190 2-125 (189)
98 1zp6_A Hypothetical protein AT 98.6 2.6E-07 9E-12 74.0 10.6 113 62-188 8-127 (191)
99 2gks_A Bifunctional SAT/APS ki 98.6 1.7E-07 5.7E-12 88.3 10.2 111 62-185 371-488 (546)
100 1bif_A 6-phosphofructo-2-kinas 98.5 2.8E-07 9.5E-12 85.0 9.9 151 61-228 37-206 (469)
101 3a00_A Guanylate kinase, GMP k 98.5 5.9E-08 2E-12 78.3 4.3 134 64-223 2-153 (186)
102 1rz3_A Hypothetical protein rb 98.5 1.6E-07 5.6E-12 76.7 7.0 119 60-188 19-165 (201)
103 2vp4_A Deoxynucleoside kinase; 98.5 2.6E-07 8.8E-12 77.1 7.9 26 61-86 18-43 (230)
104 3ch4_B Pmkase, phosphomevalona 98.4 9E-07 3.1E-11 73.0 9.7 110 62-185 10-145 (202)
105 2ocp_A DGK, deoxyguanosine kin 98.4 5.1E-07 1.7E-11 75.6 8.1 27 62-88 1-27 (241)
106 1p6x_A Thymidine kinase; P-loo 98.4 1.6E-06 5.4E-11 76.8 11.6 29 61-89 5-33 (334)
107 1m8p_A Sulfate adenylyltransfe 98.4 2.7E-06 9.4E-11 80.5 12.5 112 60-185 393-514 (573)
108 3a8t_A Adenylate isopentenyltr 98.3 7.7E-07 2.6E-11 78.9 7.4 36 62-97 39-74 (339)
109 3asz_A Uridine kinase; cytidin 98.3 1.3E-06 4.4E-11 71.2 7.8 38 62-99 5-44 (211)
110 3c8u_A Fructokinase; YP_612366 98.3 7.5E-07 2.6E-11 73.0 6.4 38 60-97 19-61 (208)
111 1sq5_A Pantothenate kinase; P- 98.3 3.2E-06 1.1E-10 73.7 9.7 38 61-98 78-122 (308)
112 3lnc_A Guanylate kinase, GMP k 98.3 1.8E-06 6.2E-11 71.7 7.2 27 62-88 26-53 (231)
113 2jeo_A Uridine-cytidine kinase 98.2 9E-06 3.1E-10 68.2 10.7 30 61-90 23-52 (245)
114 3tqc_A Pantothenate kinase; bi 98.2 5.6E-07 1.9E-11 79.4 3.0 39 60-98 89-134 (321)
115 1osn_A Thymidine kinase, VZV-T 98.1 4.9E-05 1.7E-09 67.4 13.7 30 61-90 10-40 (341)
116 1of1_A Thymidine kinase; trans 98.1 7.2E-05 2.5E-09 67.1 14.6 28 61-88 47-74 (376)
117 1e2k_A Thymidine kinase; trans 98.1 6.6E-05 2.3E-09 66.3 14.1 27 62-88 3-29 (331)
118 3crm_A TRNA delta(2)-isopenten 98.1 1.4E-06 4.8E-11 76.8 3.3 37 62-98 4-40 (323)
119 1s96_A Guanylate kinase, GMP k 97.9 4.8E-05 1.7E-09 63.1 9.1 27 62-88 15-41 (219)
120 3d3q_A TRNA delta(2)-isopenten 97.9 4.7E-06 1.6E-10 73.9 3.0 35 63-97 7-41 (340)
121 1dek_A Deoxynucleoside monopho 97.9 6.7E-06 2.3E-10 69.6 3.7 40 64-103 2-41 (241)
122 3cr8_A Sulfate adenylyltranfer 97.9 2.5E-05 8.4E-10 73.6 7.9 37 62-98 368-410 (552)
123 3foz_A TRNA delta(2)-isopenten 97.8 1E-05 3.4E-10 70.9 3.6 36 62-97 9-44 (316)
124 3t15_A Ribulose bisphosphate c 97.8 1.5E-05 5E-10 68.9 4.4 39 61-99 34-74 (293)
125 3exa_A TRNA delta(2)-isopenten 97.8 1.2E-05 4E-10 70.7 3.3 35 63-97 3-37 (322)
126 3syl_A Protein CBBX; photosynt 97.7 2.9E-05 9.9E-10 66.7 5.2 26 62-87 66-91 (309)
127 4gp7_A Metallophosphoesterase; 97.7 0.00069 2.3E-08 53.5 12.9 107 62-188 8-122 (171)
128 1kgd_A CASK, peripheral plasma 97.7 2.8E-05 9.6E-10 62.1 3.7 29 60-88 2-30 (180)
129 2ga8_A Hypothetical 39.9 kDa p 97.6 1.8E-05 6.2E-10 70.5 2.4 30 62-91 23-52 (359)
130 1lv7_A FTSH; alpha/beta domain 97.6 5.1E-05 1.7E-09 63.7 4.3 31 64-94 46-76 (257)
131 2qz4_A Paraplegin; AAA+, SPG7, 97.6 4.9E-05 1.7E-09 63.5 4.2 33 62-94 38-70 (262)
132 4b4t_M 26S protease regulatory 97.6 3.9E-05 1.3E-09 70.2 3.7 39 62-100 214-254 (434)
133 3ec2_A DNA replication protein 97.5 6.3E-05 2.1E-09 59.7 4.2 38 62-99 37-80 (180)
134 4b4t_K 26S protease regulatory 97.5 4.6E-05 1.6E-09 69.6 3.7 32 63-94 206-237 (428)
135 4b4t_L 26S protease subunit RP 97.5 4.6E-05 1.6E-09 69.7 3.7 38 62-99 214-253 (437)
136 3eph_A TRNA isopentenyltransfe 97.5 4.1E-05 1.4E-09 69.3 3.1 34 63-96 2-35 (409)
137 3eie_A Vacuolar protein sortin 97.5 6.4E-05 2.2E-09 65.6 4.2 38 62-99 50-89 (322)
138 4b4t_J 26S protease regulatory 97.5 4.3E-05 1.5E-09 69.2 3.2 38 63-100 182-221 (405)
139 3hws_A ATP-dependent CLP prote 97.5 7.2E-05 2.5E-09 66.2 4.0 33 62-94 50-82 (363)
140 3cf0_A Transitional endoplasmi 97.5 6.6E-05 2.3E-09 64.9 3.6 39 62-100 48-88 (301)
141 3te6_A Regulatory protein SIR3 97.5 0.00013 4.3E-09 64.1 5.4 27 61-87 43-69 (318)
142 3b9p_A CG5977-PA, isoform A; A 97.5 6.7E-05 2.3E-09 64.1 3.6 32 62-93 53-84 (297)
143 3h4m_A Proteasome-activating n 97.4 7.3E-05 2.5E-09 63.4 3.7 33 62-94 50-82 (285)
144 1d2n_A N-ethylmaleimide-sensit 97.4 9.3E-05 3.2E-09 62.6 4.1 33 62-94 63-95 (272)
145 2x8a_A Nuclear valosin-contain 97.4 8.2E-05 2.8E-09 63.7 3.8 29 66-94 47-75 (274)
146 1g41_A Heat shock protein HSLU 97.4 7.4E-05 2.5E-09 68.5 3.6 33 63-95 50-82 (444)
147 1odf_A YGR205W, hypothetical 3 97.4 8.7E-05 3E-09 64.2 3.8 39 61-99 29-75 (290)
148 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0001 3.5E-09 64.5 4.1 38 62-99 44-84 (322)
149 4b4t_H 26S protease regulatory 97.4 7E-05 2.4E-09 68.9 3.2 38 62-99 242-281 (467)
150 4b4t_I 26S protease regulatory 97.4 9.3E-05 3.2E-09 67.5 3.7 39 62-100 215-255 (437)
151 1ofh_A ATP-dependent HSL prote 97.4 0.00011 3.7E-09 62.7 3.7 32 63-94 50-81 (310)
152 3ney_A 55 kDa erythrocyte memb 97.3 0.00013 4.5E-09 59.7 3.9 28 61-88 17-44 (197)
153 1g8f_A Sulfate adenylyltransfe 97.3 0.00011 3.7E-09 68.6 3.5 28 62-89 394-421 (511)
154 1um8_A ATP-dependent CLP prote 97.3 0.00013 4.6E-09 64.7 4.0 32 63-94 72-103 (376)
155 2r62_A Cell division protease 97.3 6.8E-05 2.3E-09 63.1 1.6 29 66-94 47-75 (268)
156 1jbk_A CLPB protein; beta barr 97.3 0.00017 5.7E-09 56.4 3.8 26 62-87 42-67 (195)
157 2qp9_X Vacuolar protein sortin 97.3 0.00013 4.4E-09 64.7 3.5 37 63-99 84-122 (355)
158 1ixz_A ATP-dependent metallopr 97.3 0.00015 5.1E-09 60.7 3.6 29 66-94 52-80 (254)
159 3cf2_A TER ATPase, transitiona 97.2 0.00082 2.8E-08 65.8 8.8 119 62-188 510-660 (806)
160 1ye8_A Protein THEP1, hypothet 97.2 0.00016 5.5E-09 58.0 3.1 26 64-89 1-26 (178)
161 2p65_A Hypothetical protein PF 97.2 0.00015 5.1E-09 56.7 2.9 25 63-87 43-67 (187)
162 3czq_A Putative polyphosphate 97.2 0.00056 1.9E-08 59.6 6.7 30 61-90 84-113 (304)
163 3d8b_A Fidgetin-like protein 1 97.2 0.00016 5.4E-09 64.1 3.3 33 62-94 116-148 (357)
164 3bos_A Putative DNA replicatio 97.2 0.00016 5.5E-09 59.0 3.1 37 62-98 51-92 (242)
165 2qmh_A HPR kinase/phosphorylas 97.2 0.00018 6E-09 59.2 3.1 35 62-97 33-67 (205)
166 1in4_A RUVB, holliday junction 97.2 0.00024 8.1E-09 62.3 3.8 29 64-92 52-80 (334)
167 1lvg_A Guanylate kinase, GMP k 97.2 0.00018 6.3E-09 58.3 2.9 27 62-88 3-29 (198)
168 2w58_A DNAI, primosome compone 97.2 0.00026 8.8E-09 57.0 3.7 36 64-99 55-95 (202)
169 2c9o_A RUVB-like 1; hexameric 97.2 0.00024 8.4E-09 64.9 4.0 32 63-94 63-96 (456)
170 2kjq_A DNAA-related protein; s 97.2 0.00017 5.9E-09 56.0 2.6 26 62-87 35-60 (149)
171 1iy2_A ATP-dependent metallopr 97.1 0.00025 8.6E-09 60.2 3.6 29 66-94 76-104 (278)
172 3pfi_A Holliday junction ATP-d 97.1 0.00027 9.4E-09 61.4 3.7 32 64-95 56-87 (338)
173 2ce7_A Cell division protein F 97.1 0.00035 1.2E-08 64.5 4.2 31 64-94 50-80 (476)
174 3n70_A Transport activator; si 97.1 0.00029 9.8E-09 54.1 3.0 23 65-87 26-48 (145)
175 3vfd_A Spastin; ATPase, microt 97.0 0.00034 1.2E-08 62.5 3.8 33 62-94 147-179 (389)
176 2zan_A Vacuolar protein sortin 97.0 0.00031 1E-08 64.2 3.2 39 62-100 166-207 (444)
177 3cf2_A TER ATPase, transitiona 97.0 0.00028 9.6E-09 69.1 2.9 38 62-99 237-276 (806)
178 1kjw_A Postsynaptic density pr 97.0 0.0031 1.1E-07 54.6 9.0 128 62-221 104-249 (295)
179 1sxj_A Activator 1 95 kDa subu 96.9 0.00046 1.6E-08 64.1 3.7 32 63-94 77-108 (516)
180 1z6g_A Guanylate kinase; struc 96.9 0.00043 1.5E-08 57.0 3.0 26 62-87 22-47 (218)
181 4fcw_A Chaperone protein CLPB; 96.9 0.00058 2E-08 58.3 4.0 27 61-87 44-71 (311)
182 1znw_A Guanylate kinase, GMP k 96.9 0.00052 1.8E-08 55.7 3.5 28 61-88 18-45 (207)
183 1svm_A Large T antigen; AAA+ f 96.9 0.00057 2E-08 61.3 3.9 32 62-93 168-199 (377)
184 1l8q_A Chromosomal replication 96.9 0.00051 1.7E-08 59.5 3.5 37 62-98 36-77 (324)
185 1hqc_A RUVB; extended AAA-ATPa 96.9 0.00057 1.9E-08 58.8 3.6 29 64-92 39-67 (324)
186 3aez_A Pantothenate kinase; tr 96.9 0.00063 2.2E-08 59.4 3.9 27 61-87 88-114 (312)
187 3dm5_A SRP54, signal recogniti 96.9 0.0043 1.5E-07 56.7 9.6 26 62-87 99-124 (443)
188 1tue_A Replication protein E1; 96.8 0.00049 1.7E-08 56.9 2.7 30 63-92 58-87 (212)
189 1njg_A DNA polymerase III subu 96.8 0.00077 2.6E-08 54.3 3.8 26 64-89 46-71 (250)
190 1zd9_A ADP-ribosylation factor 96.8 0.00062 2.1E-08 53.9 3.2 27 60-86 19-45 (188)
191 2r44_A Uncharacterized protein 96.8 0.00044 1.5E-08 60.1 2.4 29 65-93 48-76 (331)
192 1xjc_A MOBB protein homolog; s 96.8 0.00074 2.5E-08 53.9 3.4 26 62-87 3-28 (169)
193 3uk6_A RUVB-like 2; hexameric 96.8 0.00068 2.3E-08 59.4 3.5 27 63-89 70-96 (368)
194 3pvs_A Replication-associated 96.8 0.00073 2.5E-08 61.9 3.8 31 64-94 51-81 (447)
195 1c9k_A COBU, adenosylcobinamid 96.8 0.00046 1.6E-08 55.7 2.1 25 66-91 2-26 (180)
196 2chg_A Replication factor C sm 96.8 0.00072 2.4E-08 53.9 3.3 22 66-87 41-62 (226)
197 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00077 2.6E-08 62.6 3.8 30 65-94 66-95 (499)
198 3co5_A Putative two-component 96.8 0.00024 8.2E-09 54.5 0.3 27 65-92 29-55 (143)
199 3pxg_A Negative regulator of g 96.8 0.0011 3.7E-08 61.0 4.6 26 62-87 200-225 (468)
200 3m6a_A ATP-dependent protease 96.7 0.00076 2.6E-08 63.2 3.6 32 62-93 107-138 (543)
201 3hu3_A Transitional endoplasmi 96.7 0.00084 2.9E-08 62.2 3.5 37 62-98 237-275 (489)
202 2qby_B CDC6 homolog 3, cell di 96.7 0.00091 3.1E-08 58.7 3.6 26 62-87 44-69 (384)
203 2ehv_A Hypothetical protein PH 96.7 0.00086 2.9E-08 55.2 3.2 23 62-84 29-51 (251)
204 2v1u_A Cell division control p 96.7 0.00062 2.1E-08 59.5 2.3 26 62-87 43-68 (387)
205 4a74_A DNA repair and recombin 96.7 0.00095 3.3E-08 54.2 3.3 26 62-87 24-49 (231)
206 2gf9_A RAS-related protein RAB 96.7 0.0012 4.1E-08 52.1 3.8 26 61-86 20-45 (189)
207 2wjg_A FEOB, ferrous iron tran 96.6 0.0013 4.5E-08 51.5 3.8 26 61-86 5-30 (188)
208 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0012 4.1E-08 53.5 3.6 26 62-87 22-47 (235)
209 2qby_A CDC6 homolog 1, cell di 96.6 0.00094 3.2E-08 58.2 3.1 33 62-94 44-82 (386)
210 2cvh_A DNA repair and recombin 96.6 0.0012 4.3E-08 53.2 3.3 33 62-94 19-53 (220)
211 1np6_A Molybdopterin-guanine d 96.6 0.0015 5E-08 52.2 3.6 26 62-87 5-30 (174)
212 1vma_A Cell division protein F 96.6 0.0015 5E-08 57.0 3.8 27 61-87 102-128 (306)
213 2qgz_A Helicase loader, putati 96.6 0.0011 3.9E-08 57.5 3.1 38 63-100 152-195 (308)
214 1w5s_A Origin recognition comp 96.6 0.0057 1.9E-07 54.0 7.8 26 62-87 49-76 (412)
215 3u61_B DNA polymerase accessor 96.5 0.0011 3.8E-08 57.2 2.9 32 63-94 48-79 (324)
216 1ypw_A Transitional endoplasmi 96.5 0.001 3.5E-08 65.3 2.9 33 62-94 237-269 (806)
217 2i3b_A HCR-ntpase, human cance 96.5 0.0013 4.4E-08 53.2 3.1 24 64-87 2-25 (189)
218 3e70_C DPA, signal recognition 96.5 0.0017 5.7E-08 57.1 4.0 27 61-87 127-153 (328)
219 1htw_A HI0065; nucleotide-bind 96.5 0.0018 6.3E-08 50.8 3.9 26 62-87 32-57 (158)
220 3pxi_A Negative regulator of g 96.5 0.0019 6.4E-08 62.7 4.6 26 62-87 200-225 (758)
221 3ihw_A Centg3; RAS, centaurin, 96.5 0.0018 6.1E-08 51.2 3.7 26 61-86 18-43 (184)
222 1g8p_A Magnesium-chelatase 38 96.5 0.001 3.5E-08 57.7 2.4 23 66-88 48-70 (350)
223 2bjv_A PSP operon transcriptio 96.5 0.0014 4.7E-08 55.0 3.1 25 64-88 30-54 (265)
224 2v9p_A Replication protein E1; 96.5 0.0016 5.4E-08 56.8 3.6 26 62-87 125-150 (305)
225 1z2a_A RAS-related protein RAB 96.5 0.0016 5.5E-08 49.7 3.2 26 61-86 3-28 (168)
226 1oix_A RAS-related protein RAB 96.5 0.0016 5.4E-08 51.9 3.3 26 62-87 28-53 (191)
227 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0015 5.2E-08 51.3 3.1 27 60-86 4-30 (184)
228 1upt_A ARL1, ADP-ribosylation 96.5 0.0022 7.4E-08 49.2 3.9 26 61-86 5-30 (171)
229 1fnn_A CDC6P, cell division co 96.4 0.0017 5.9E-08 56.9 3.6 24 64-87 45-68 (389)
230 2oil_A CATX-8, RAS-related pro 96.4 0.0018 6.1E-08 51.1 3.4 27 60-86 22-48 (193)
231 1rj9_A FTSY, signal recognitio 96.4 0.0018 6.2E-08 56.3 3.7 26 62-87 101-126 (304)
232 2eyu_A Twitching motility prot 96.4 0.0021 7.4E-08 54.5 4.0 27 61-87 23-49 (261)
233 2z4s_A Chromosomal replication 96.4 0.0019 6.6E-08 58.8 3.8 25 63-87 130-154 (440)
234 2r2a_A Uncharacterized protein 96.4 0.0019 6.6E-08 52.6 3.4 26 61-86 3-28 (199)
235 3b9q_A Chloroplast SRP recepto 96.4 0.0022 7.4E-08 55.7 3.9 27 61-87 98-124 (302)
236 1n0w_A DNA repair protein RAD5 96.4 0.0017 5.9E-08 53.2 3.1 25 62-86 23-47 (243)
237 1sxj_D Activator 1 41 kDa subu 96.4 0.0017 5.9E-08 56.2 3.3 23 66-88 61-83 (353)
238 1sxj_C Activator 1 40 kDa subu 96.4 0.0017 5.8E-08 56.7 3.2 23 66-88 49-71 (340)
239 2h17_A ADP-ribosylation factor 96.4 0.0016 5.4E-08 51.0 2.7 27 60-86 18-44 (181)
240 2orw_A Thymidine kinase; TMTK, 96.4 0.0021 7.1E-08 51.6 3.5 25 63-87 3-27 (184)
241 1r6b_X CLPA protein; AAA+, N-t 96.4 0.002 6.8E-08 62.4 3.9 39 60-98 484-525 (758)
242 2a5j_A RAS-related protein RAB 96.4 0.0027 9.1E-08 50.2 4.0 27 60-86 18-44 (191)
243 2f1r_A Molybdopterin-guanine d 96.4 0.00092 3.1E-08 53.3 1.2 26 63-88 2-27 (171)
244 2px0_A Flagellar biosynthesis 96.3 0.0022 7.6E-08 55.4 3.6 26 62-87 104-129 (296)
245 1kao_A RAP2A; GTP-binding prot 96.3 0.0022 7.5E-08 48.7 3.2 24 63-86 3-26 (167)
246 1z06_A RAS-related protein RAB 96.3 0.0021 7.3E-08 50.6 3.2 26 61-86 18-43 (189)
247 3czp_A Putative polyphosphate 96.3 0.0053 1.8E-07 57.0 6.3 30 61-90 41-70 (500)
248 2dr3_A UPF0273 protein PH0284; 96.3 0.0023 7.8E-08 52.5 3.4 34 62-95 22-60 (247)
249 3tkl_A RAS-related protein RAB 96.3 0.0024 8.2E-08 50.3 3.4 26 61-86 14-39 (196)
250 2dyk_A GTP-binding protein; GT 96.3 0.0025 8.5E-08 48.3 3.4 24 64-87 2-25 (161)
251 1iqp_A RFCS; clamp loader, ext 96.3 0.0025 8.4E-08 54.5 3.7 24 65-88 48-71 (327)
252 2ce2_X GTPase HRAS; signaling 96.3 0.0023 7.9E-08 48.4 3.1 24 63-86 3-26 (166)
253 1ypw_A Transitional endoplasmi 96.3 0.0011 3.9E-08 64.9 1.7 39 62-100 510-550 (806)
254 1cr0_A DNA primase/helicase; R 96.3 0.0025 8.4E-08 54.5 3.6 26 62-87 34-59 (296)
255 1sxj_E Activator 1 40 kDa subu 96.3 0.002 6.8E-08 56.1 3.0 22 66-87 39-60 (354)
256 2wsm_A Hydrogenase expression/ 96.3 0.0029 9.8E-08 51.2 3.8 27 62-88 29-55 (221)
257 2p5s_A RAS and EF-hand domain 96.3 0.0026 8.7E-08 50.7 3.4 27 60-86 25-51 (199)
258 3clv_A RAB5 protein, putative; 96.3 0.0037 1.3E-07 49.0 4.3 26 61-86 5-30 (208)
259 3kl4_A SRP54, signal recogniti 96.2 0.0028 9.4E-08 57.9 3.9 26 62-87 96-121 (433)
260 2f9l_A RAB11B, member RAS onco 96.2 0.0026 8.8E-08 50.7 3.3 25 62-86 4-28 (199)
261 2fn4_A P23, RAS-related protei 96.2 0.0027 9.3E-08 49.0 3.3 26 61-86 7-32 (181)
262 2wji_A Ferrous iron transport 96.2 0.0025 8.7E-08 49.2 3.1 23 63-85 3-25 (165)
263 2bov_A RAla, RAS-related prote 96.2 0.003 1E-07 50.1 3.5 26 61-86 12-37 (206)
264 2hxs_A RAB-26, RAS-related pro 96.2 0.0034 1.2E-07 48.5 3.6 26 61-86 4-29 (178)
265 1ky3_A GTP-binding protein YPT 96.2 0.0029 9.8E-08 48.9 3.2 26 61-86 6-31 (182)
266 3tif_A Uncharacterized ABC tra 96.2 0.0023 7.9E-08 53.4 2.8 27 61-87 29-55 (235)
267 1jr3_A DNA polymerase III subu 96.2 0.0034 1.2E-07 54.8 4.0 27 63-89 38-64 (373)
268 1moz_A ARL1, ADP-ribosylation 96.2 0.0021 7.3E-08 50.0 2.4 24 61-84 16-39 (183)
269 2hf9_A Probable hydrogenase ni 96.2 0.0034 1.2E-07 50.9 3.8 26 62-87 37-62 (226)
270 2gj8_A MNME, tRNA modification 96.2 0.0029 9.8E-08 49.5 3.1 25 62-86 3-27 (172)
271 1u0j_A DNA replication protein 96.2 0.0036 1.2E-07 53.5 4.0 27 63-89 104-130 (267)
272 1u8z_A RAS-related protein RAL 96.2 0.0031 1.1E-07 47.9 3.2 25 62-86 3-27 (168)
273 2og2_A Putative signal recogni 96.2 0.0034 1.2E-07 55.9 3.9 27 61-87 155-181 (359)
274 1lw7_A Transcriptional regulat 96.2 0.0025 8.5E-08 56.4 3.0 28 63-90 170-197 (365)
275 2chq_A Replication factor C sm 96.1 0.0028 9.6E-08 53.9 3.2 22 66-87 41-62 (319)
276 2nzj_A GTP-binding protein REM 96.1 0.0031 1.1E-07 48.5 3.2 25 62-86 3-27 (175)
277 3pxi_A Negative regulator of g 96.1 0.0035 1.2E-07 60.8 4.2 41 60-100 517-563 (758)
278 2a9k_A RAS-related protein RAL 96.1 0.0031 1.1E-07 48.9 3.2 25 62-86 17-41 (187)
279 1fzq_A ADP-ribosylation factor 96.1 0.0033 1.1E-07 49.4 3.4 28 59-86 12-39 (181)
280 2lkc_A Translation initiation 96.1 0.0042 1.4E-07 47.9 3.9 25 61-85 6-30 (178)
281 1c1y_A RAS-related protein RAP 96.1 0.0032 1.1E-07 47.9 3.2 24 63-86 3-26 (167)
282 2erx_A GTP-binding protein DI- 96.1 0.003 1E-07 48.2 3.0 24 62-85 2-25 (172)
283 2y8e_A RAB-protein 6, GH09086P 96.1 0.0029 9.9E-08 48.7 2.9 26 61-86 12-37 (179)
284 1g16_A RAS-related protein SEC 96.1 0.0032 1.1E-07 48.1 3.1 25 62-86 2-26 (170)
285 4dsu_A GTPase KRAS, isoform 2B 96.1 0.003 1E-07 49.2 3.0 26 62-87 3-28 (189)
286 2qm8_A GTPase/ATPase; G protei 96.1 0.0038 1.3E-07 54.9 3.9 27 61-87 53-79 (337)
287 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.003 1E-07 48.7 2.9 25 62-86 6-30 (177)
288 2ged_A SR-beta, signal recogni 96.1 0.0037 1.3E-07 49.2 3.5 27 61-87 46-72 (193)
289 3bc1_A RAS-related protein RAB 96.1 0.0032 1.1E-07 49.1 3.1 26 61-86 9-34 (195)
290 3p32_A Probable GTPase RV1496/ 96.1 0.0038 1.3E-07 55.1 3.9 27 61-87 77-103 (355)
291 1z08_A RAS-related protein RAB 96.1 0.0033 1.1E-07 48.1 3.0 26 61-86 4-29 (170)
292 2pcj_A ABC transporter, lipopr 96.1 0.0026 8.9E-08 52.6 2.6 26 62-87 29-54 (224)
293 3oes_A GTPase rhebl1; small GT 96.1 0.0033 1.1E-07 50.1 3.1 26 61-86 22-47 (201)
294 1nrj_B SR-beta, signal recogni 96.1 0.0038 1.3E-07 50.3 3.5 27 61-87 10-36 (218)
295 1sxj_B Activator 1 37 kDa subu 96.1 0.0034 1.2E-07 53.5 3.3 22 66-87 45-66 (323)
296 1ek0_A Protein (GTP-binding pr 96.0 0.0032 1.1E-07 47.9 2.9 24 63-86 3-26 (170)
297 2cbz_A Multidrug resistance-as 96.0 0.003 1E-07 52.8 2.8 27 61-87 29-55 (237)
298 3b85_A Phosphate starvation-in 96.0 0.0035 1.2E-07 51.4 3.1 25 62-86 21-45 (208)
299 1r2q_A RAS-related protein RAB 96.0 0.0025 8.5E-08 48.6 2.1 25 62-86 5-29 (170)
300 3c5c_A RAS-like protein 12; GD 96.0 0.0037 1.3E-07 49.3 3.2 26 61-86 19-44 (187)
301 3tw8_B RAS-related protein RAB 96.0 0.0033 1.1E-07 48.5 2.8 25 61-85 7-31 (181)
302 1z0j_A RAB-22, RAS-related pro 96.0 0.0034 1.2E-07 47.9 2.8 26 62-87 5-30 (170)
303 1z0f_A RAB14, member RAS oncog 96.0 0.004 1.4E-07 47.9 3.3 27 61-87 13-39 (179)
304 3lxx_A GTPase IMAP family memb 96.0 0.0035 1.2E-07 51.7 3.0 26 61-86 27-52 (239)
305 2www_A Methylmalonic aciduria 96.0 0.0044 1.5E-07 54.7 3.9 26 62-87 73-98 (349)
306 2ew1_A RAS-related protein RAB 96.0 0.0038 1.3E-07 50.3 3.2 26 61-86 24-49 (201)
307 3czp_A Putative polyphosphate 96.0 0.0057 1.9E-07 56.8 4.7 106 61-191 298-429 (500)
308 3q72_A GTP-binding protein RAD 96.0 0.0037 1.3E-07 47.7 2.9 22 63-84 2-23 (166)
309 1mv5_A LMRA, multidrug resista 96.0 0.0035 1.2E-07 52.5 3.0 27 61-87 26-52 (243)
310 2efe_B Small GTP-binding prote 96.0 0.0039 1.3E-07 48.3 3.0 26 61-86 10-35 (181)
311 3kkq_A RAS-related protein M-R 96.0 0.005 1.7E-07 47.9 3.7 26 61-86 16-41 (183)
312 3q85_A GTP-binding protein REM 96.0 0.0041 1.4E-07 47.6 3.1 22 64-85 3-24 (169)
313 1nlf_A Regulatory protein REPA 96.0 0.0036 1.2E-07 53.1 3.0 26 62-87 29-54 (279)
314 2g6b_A RAS-related protein RAB 96.0 0.0046 1.6E-07 47.8 3.4 26 61-86 8-33 (180)
315 2v3c_C SRP54, signal recogniti 95.9 0.004 1.4E-07 56.8 3.4 27 61-87 97-123 (432)
316 2zej_A Dardarin, leucine-rich 95.9 0.0031 1.1E-07 49.6 2.4 22 64-85 3-24 (184)
317 1b0u_A Histidine permease; ABC 95.9 0.0034 1.2E-07 53.2 2.8 27 61-87 30-56 (262)
318 3lxw_A GTPase IMAP family memb 95.9 0.0038 1.3E-07 52.2 3.1 26 61-86 19-44 (247)
319 2yhs_A FTSY, cell division pro 95.9 0.0047 1.6E-07 57.3 3.8 27 61-87 291-317 (503)
320 3gfo_A Cobalt import ATP-bindi 95.9 0.0032 1.1E-07 53.9 2.6 26 62-87 33-58 (275)
321 2ewv_A Twitching motility prot 95.9 0.0049 1.7E-07 55.0 3.8 26 62-87 135-160 (372)
322 2xtp_A GTPase IMAP family memb 95.9 0.0043 1.5E-07 51.8 3.3 26 61-86 20-45 (260)
323 3pqc_A Probable GTP-binding pr 95.9 0.0064 2.2E-07 47.5 4.1 26 61-86 21-46 (195)
324 3t1o_A Gliding protein MGLA; G 95.9 0.0037 1.3E-07 49.0 2.7 28 61-88 12-39 (198)
325 1svi_A GTP-binding protein YSX 95.9 0.0046 1.6E-07 48.6 3.2 26 61-86 21-46 (195)
326 3con_A GTPase NRAS; structural 95.9 0.004 1.4E-07 48.8 2.9 25 62-86 20-44 (190)
327 4g1u_C Hemin import ATP-bindin 95.9 0.0035 1.2E-07 53.3 2.7 26 62-87 36-61 (266)
328 2olj_A Amino acid ABC transpor 95.9 0.0037 1.3E-07 53.1 2.8 27 61-87 48-74 (263)
329 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0044 1.5E-07 52.1 3.2 25 62-86 28-52 (250)
330 1zu4_A FTSY; GTPase, signal re 95.9 0.0055 1.9E-07 53.6 3.9 27 61-87 103-129 (320)
331 2onk_A Molybdate/tungstate ABC 95.9 0.0041 1.4E-07 52.1 2.9 24 64-87 25-48 (240)
332 2b8t_A Thymidine kinase; deoxy 95.9 0.0057 1.9E-07 50.8 3.8 27 61-87 10-36 (223)
333 2zu0_C Probable ATP-dependent 95.9 0.0046 1.6E-07 52.6 3.3 26 61-86 44-69 (267)
334 2ixe_A Antigen peptide transpo 95.9 0.0038 1.3E-07 53.2 2.8 27 61-87 43-69 (271)
335 2ff7_A Alpha-hemolysin translo 95.9 0.0037 1.3E-07 52.6 2.7 26 62-87 34-59 (247)
336 2atv_A RERG, RAS-like estrogen 95.9 0.0053 1.8E-07 48.6 3.5 26 61-86 26-51 (196)
337 1gwn_A RHO-related GTP-binding 95.9 0.0046 1.6E-07 49.9 3.1 26 61-86 26-51 (205)
338 1yrb_A ATP(GTP)binding protein 95.9 0.0062 2.1E-07 50.6 4.0 27 61-87 12-38 (262)
339 2ghi_A Transport protein; mult 95.9 0.004 1.4E-07 52.7 2.8 27 61-87 44-70 (260)
340 1pui_A ENGB, probable GTP-bind 95.8 0.0027 9.1E-08 50.8 1.6 25 61-85 24-48 (210)
341 2bme_A RAB4A, RAS-related prot 95.8 0.0044 1.5E-07 48.3 2.9 25 62-86 9-33 (186)
342 1ji0_A ABC transporter; ATP bi 95.8 0.0039 1.3E-07 52.1 2.7 26 62-87 31-56 (240)
343 1g6h_A High-affinity branched- 95.8 0.0039 1.3E-07 52.7 2.7 26 62-87 32-57 (257)
344 2qen_A Walker-type ATPase; unk 95.8 0.0042 1.4E-07 53.3 3.0 32 64-95 32-63 (350)
345 4bas_A ADP-ribosylation factor 95.8 0.0045 1.5E-07 48.8 2.9 26 60-85 14-39 (199)
346 1vpl_A ABC transporter, ATP-bi 95.8 0.0042 1.4E-07 52.6 2.8 27 61-87 39-65 (256)
347 1pzn_A RAD51, DNA repair and r 95.8 0.0057 1.9E-07 54.0 3.7 26 62-87 130-155 (349)
348 1vg8_A RAS-related protein RAB 95.8 0.0053 1.8E-07 48.7 3.2 27 61-87 6-32 (207)
349 2pze_A Cystic fibrosis transme 95.8 0.0042 1.4E-07 51.5 2.6 26 62-87 33-58 (229)
350 1r8s_A ADP-ribosylation factor 95.8 0.0059 2E-07 46.4 3.3 23 64-86 1-23 (164)
351 1a5t_A Delta prime, HOLB; zinc 95.8 0.0074 2.5E-07 52.6 4.3 30 62-91 23-52 (334)
352 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0031 1.1E-07 58.5 2.0 24 65-88 43-66 (500)
353 2h57_A ADP-ribosylation factor 95.8 0.0041 1.4E-07 48.9 2.4 27 61-87 19-45 (190)
354 2fg5_A RAB-22B, RAS-related pr 95.8 0.0049 1.7E-07 48.7 2.9 26 61-86 21-46 (192)
355 1m2o_B GTP-binding protein SAR 95.8 0.0052 1.8E-07 48.7 3.0 26 61-86 21-46 (190)
356 1qvr_A CLPB protein; coiled co 95.8 0.0038 1.3E-07 61.5 2.7 25 63-87 191-215 (854)
357 3bwd_D RAC-like GTP-binding pr 95.8 0.006 2.1E-07 47.2 3.4 26 61-86 6-31 (182)
358 1sgw_A Putative ABC transporte 95.8 0.0037 1.3E-07 51.5 2.2 26 62-87 34-59 (214)
359 1ojl_A Transcriptional regulat 95.8 0.0048 1.6E-07 53.3 3.0 24 64-87 26-49 (304)
360 3dz8_A RAS-related protein RAB 95.8 0.0032 1.1E-07 49.7 1.7 27 61-87 21-47 (191)
361 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0054 1.9E-07 53.9 3.3 33 62-94 122-156 (331)
362 1qvr_A CLPB protein; coiled co 95.7 0.0042 1.4E-07 61.1 2.9 28 60-87 584-612 (854)
363 1ksh_A ARF-like protein 2; sma 95.7 0.0058 2E-07 47.7 3.2 26 61-86 16-41 (186)
364 1zj6_A ADP-ribosylation factor 95.7 0.0064 2.2E-07 47.7 3.4 25 61-85 14-38 (187)
365 3llu_A RAS-related GTP-binding 95.7 0.0037 1.3E-07 49.6 2.0 27 60-86 17-43 (196)
366 3t5g_A GTP-binding protein RHE 95.7 0.0044 1.5E-07 48.1 2.4 25 62-86 5-29 (181)
367 2yz2_A Putative ABC transporte 95.7 0.0048 1.7E-07 52.4 2.8 27 61-87 31-57 (266)
368 2gf0_A GTP-binding protein DI- 95.7 0.0073 2.5E-07 47.5 3.7 25 62-86 7-31 (199)
369 2qi9_C Vitamin B12 import ATP- 95.7 0.0046 1.6E-07 52.1 2.6 26 62-87 25-50 (249)
370 2b6h_A ADP-ribosylation factor 95.7 0.0065 2.2E-07 48.2 3.4 25 61-85 27-51 (192)
371 2ihy_A ABC transporter, ATP-bi 95.7 0.0046 1.6E-07 53.0 2.6 26 62-87 46-71 (279)
372 3hr8_A Protein RECA; alpha and 95.7 0.0064 2.2E-07 54.0 3.6 38 58-96 57-99 (356)
373 2p67_A LAO/AO transport system 95.7 0.0068 2.3E-07 53.2 3.8 27 61-87 54-80 (341)
374 2il1_A RAB12; G-protein, GDP, 95.7 0.0056 1.9E-07 48.5 2.9 24 62-85 25-48 (192)
375 2j37_W Signal recognition part 95.7 0.0064 2.2E-07 56.5 3.7 27 61-87 99-125 (504)
376 2qu8_A Putative nucleolar GTP- 95.7 0.0075 2.6E-07 49.2 3.7 26 61-86 27-52 (228)
377 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0057 2E-07 47.4 2.9 25 62-86 4-28 (186)
378 2r8r_A Sensor protein; KDPD, P 95.7 0.0085 2.9E-07 50.0 4.0 26 62-87 5-30 (228)
379 2gza_A Type IV secretion syste 95.7 0.0042 1.4E-07 55.1 2.3 27 62-88 174-200 (361)
380 2cxx_A Probable GTP-binding pr 95.6 0.0057 1.9E-07 47.7 2.8 23 64-86 2-24 (190)
381 2iwr_A Centaurin gamma 1; ANK 95.6 0.005 1.7E-07 47.7 2.4 25 62-86 6-30 (178)
382 2f7s_A C25KG, RAS-related prot 95.6 0.0064 2.2E-07 48.9 3.1 25 61-85 23-47 (217)
383 3cph_A RAS-related protein SEC 95.6 0.0074 2.5E-07 48.1 3.4 26 61-86 18-43 (213)
384 2g3y_A GTP-binding protein GEM 95.6 0.0067 2.3E-07 49.6 3.2 25 61-85 35-59 (211)
385 3sop_A Neuronal-specific septi 95.6 0.0069 2.3E-07 51.6 3.4 24 64-87 3-26 (270)
386 2q3h_A RAS homolog gene family 95.6 0.007 2.4E-07 47.9 3.2 26 60-85 17-42 (201)
387 2nq2_C Hypothetical ABC transp 95.6 0.0053 1.8E-07 51.8 2.6 26 62-87 30-55 (253)
388 3jvv_A Twitching mobility prot 95.6 0.0083 2.8E-07 53.2 4.0 34 63-96 123-160 (356)
389 3reg_A RHO-like small GTPase; 95.6 0.0065 2.2E-07 47.9 3.0 26 61-86 21-46 (194)
390 2gco_A H9, RHO-related GTP-bin 95.6 0.0086 2.9E-07 47.7 3.7 26 61-86 23-48 (201)
391 3k53_A Ferrous iron transport 95.6 0.007 2.4E-07 51.1 3.2 24 63-86 3-26 (271)
392 2fh5_B SR-beta, signal recogni 95.6 0.0072 2.5E-07 48.4 3.1 27 61-87 5-31 (214)
393 3fvq_A Fe(3+) IONS import ATP- 95.6 0.0068 2.3E-07 53.9 3.2 26 62-87 29-54 (359)
394 1f6b_A SAR1; gtpases, N-termin 95.5 0.0075 2.6E-07 48.1 3.2 25 61-85 23-47 (198)
395 2j1l_A RHO-related GTP-binding 95.5 0.0072 2.5E-07 48.8 3.1 25 61-85 32-56 (214)
396 1x3s_A RAS-related protein RAB 95.5 0.0068 2.3E-07 47.4 2.9 25 62-86 14-38 (195)
397 2zts_A Putative uncharacterize 95.5 0.0084 2.9E-07 49.1 3.5 24 62-85 29-52 (251)
398 1zcb_A G alpha I/13; GTP-bindi 95.5 0.0074 2.5E-07 53.7 3.3 28 61-88 31-58 (362)
399 2i1q_A DNA repair and recombin 95.5 0.0058 2E-07 52.9 2.5 25 62-86 97-121 (322)
400 2yyz_A Sugar ABC transporter, 95.5 0.0078 2.7E-07 53.5 3.3 26 62-87 28-53 (359)
401 1j8m_F SRP54, signal recogniti 95.5 0.0095 3.3E-07 51.5 3.8 26 62-87 97-122 (297)
402 1r6b_X CLPA protein; AAA+, N-t 95.5 0.009 3.1E-07 57.8 4.0 26 62-87 206-231 (758)
403 3tqf_A HPR(Ser) kinase; transf 95.5 0.0095 3.3E-07 47.8 3.5 32 62-94 15-46 (181)
404 3rlf_A Maltose/maltodextrin im 95.4 0.008 2.7E-07 53.9 3.3 26 62-87 28-53 (381)
405 1xx6_A Thymidine kinase; NESG, 95.4 0.011 3.8E-07 47.8 3.9 27 61-87 6-32 (191)
406 1zbd_A Rabphilin-3A; G protein 95.4 0.0092 3.1E-07 47.3 3.3 25 62-86 7-31 (203)
407 2zr9_A Protein RECA, recombina 95.4 0.0086 2.9E-07 52.9 3.4 34 62-95 60-98 (349)
408 4gzl_A RAS-related C3 botulinu 95.4 0.0092 3.1E-07 47.8 3.3 26 61-86 28-53 (204)
409 1p9r_A General secretion pathw 95.4 0.011 3.6E-07 53.7 4.1 27 62-88 166-192 (418)
410 2bcg_Y Protein YP2, GTP-bindin 95.4 0.0078 2.7E-07 47.9 2.9 26 61-86 6-31 (206)
411 2it1_A 362AA long hypothetical 95.4 0.0084 2.9E-07 53.4 3.3 26 62-87 28-53 (362)
412 2o52_A RAS-related protein RAB 95.4 0.0076 2.6E-07 48.1 2.7 25 61-85 23-47 (200)
413 2fv8_A H6, RHO-related GTP-bin 95.4 0.0068 2.3E-07 48.5 2.4 25 62-86 24-48 (207)
414 2gno_A DNA polymerase III, gam 95.4 0.057 2E-06 46.6 8.5 25 63-87 18-42 (305)
415 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0071 2.4E-07 55.5 2.8 26 62-87 137-162 (460)
416 3cbq_A GTP-binding protein REM 95.4 0.0068 2.3E-07 48.3 2.4 23 62-84 22-44 (195)
417 1z47_A CYSA, putative ABC-tran 95.4 0.0085 2.9E-07 53.2 3.2 26 62-87 40-65 (355)
418 1v43_A Sugar-binding transport 95.4 0.0089 3E-07 53.4 3.3 26 62-87 36-61 (372)
419 2xxa_A Signal recognition part 95.3 0.011 3.8E-07 53.8 4.0 27 61-87 98-124 (433)
420 3a1s_A Iron(II) transport prot 95.3 0.008 2.7E-07 50.6 2.8 25 61-85 3-27 (258)
421 2xkx_A Disks large homolog 4; 95.3 0.2 7E-06 48.3 13.0 115 62-188 530-662 (721)
422 3k1j_A LON protease, ATP-depen 95.3 0.0074 2.5E-07 57.1 2.8 26 64-89 61-86 (604)
423 2pjz_A Hypothetical protein ST 95.3 0.0077 2.6E-07 51.2 2.6 25 63-87 30-54 (263)
424 1ls1_A Signal recognition part 95.3 0.012 3.9E-07 50.8 3.8 26 62-87 97-122 (295)
425 2cjw_A GTP-binding protein GEM 95.3 0.012 4E-07 46.8 3.5 25 62-86 5-29 (192)
426 2bbs_A Cystic fibrosis transme 95.3 0.0079 2.7E-07 51.8 2.7 26 62-87 63-88 (290)
427 2hup_A RAS-related protein RAB 95.3 0.0096 3.3E-07 47.5 3.0 26 61-86 27-52 (201)
428 2fu5_C RAS-related protein RAB 95.3 0.0058 2E-07 47.5 1.6 25 62-86 7-31 (183)
429 3tui_C Methionine import ATP-b 95.3 0.0099 3.4E-07 53.0 3.3 27 61-87 52-78 (366)
430 2atx_A Small GTP binding prote 95.3 0.009 3.1E-07 47.0 2.7 25 62-86 17-41 (194)
431 3lda_A DNA repair protein RAD5 95.2 0.0091 3.1E-07 53.8 3.0 25 62-86 177-201 (400)
432 3nh6_A ATP-binding cassette SU 95.2 0.0053 1.8E-07 53.4 1.5 27 61-87 78-104 (306)
433 1g29_1 MALK, maltose transport 95.2 0.0098 3.4E-07 53.1 3.2 26 62-87 28-53 (372)
434 1v5w_A DMC1, meiotic recombina 95.2 0.013 4.4E-07 51.5 3.9 28 58-86 118-145 (343)
435 2fna_A Conserved hypothetical 95.2 0.014 4.7E-07 50.2 3.9 27 64-90 31-57 (357)
436 2x77_A ADP-ribosylation factor 95.2 0.0084 2.9E-07 47.0 2.3 24 61-84 20-43 (189)
437 3d31_A Sulfate/molybdate ABC t 95.1 0.0071 2.4E-07 53.6 2.0 26 62-87 25-50 (348)
438 2z43_A DNA repair and recombin 95.1 0.012 4.1E-07 51.1 3.4 26 62-87 106-131 (324)
439 3gd7_A Fusion complex of cysti 95.1 0.011 3.9E-07 53.1 3.2 26 61-86 45-70 (390)
440 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.0065 2.2E-07 53.2 1.6 26 63-88 171-196 (330)
441 2j0v_A RAC-like GTP-binding pr 95.1 0.014 4.7E-07 46.7 3.4 25 62-86 8-32 (212)
442 3q3j_B RHO-related GTP-binding 95.1 0.014 4.7E-07 47.2 3.4 26 61-86 25-50 (214)
443 2rcn_A Probable GTPase ENGC; Y 95.1 0.012 4E-07 52.4 3.1 24 62-85 214-237 (358)
444 3gj0_A GTP-binding nuclear pro 95.0 0.012 4.2E-07 47.4 3.0 28 60-87 12-40 (221)
445 3cpj_B GTP-binding protein YPT 95.0 0.013 4.5E-07 47.5 3.1 26 61-86 11-36 (223)
446 1u94_A RECA protein, recombina 95.0 0.014 4.7E-07 51.8 3.5 34 62-95 62-100 (356)
447 3upu_A ATP-dependent DNA helic 95.0 0.013 4.4E-07 53.4 3.4 23 65-87 47-69 (459)
448 3kta_A Chromosome segregation 95.0 0.015 5.1E-07 45.6 3.3 24 65-88 28-51 (182)
449 3ozx_A RNAse L inhibitor; ATP 95.0 0.013 4.5E-07 54.8 3.4 30 58-87 20-49 (538)
450 3b1v_A Ferrous iron uptake tra 95.0 0.013 4.6E-07 49.8 3.2 25 62-86 2-26 (272)
451 3tvt_A Disks large 1 tumor sup 95.0 0.34 1.2E-05 41.6 12.1 115 62-187 99-231 (292)
452 3f9v_A Minichromosome maintena 95.0 0.0048 1.6E-07 58.4 0.4 28 64-91 328-355 (595)
453 3l0i_B RAS-related protein RAB 94.9 0.0041 1.4E-07 49.4 -0.1 24 61-84 31-54 (199)
454 2yv5_A YJEQ protein; hydrolase 94.9 0.014 5E-07 50.3 3.2 25 62-87 164-188 (302)
455 1nij_A Hypothetical protein YJ 94.9 0.016 5.4E-07 50.4 3.4 26 62-87 3-28 (318)
456 1oxx_K GLCV, glucose, ABC tran 94.9 0.0074 2.5E-07 53.5 1.3 26 62-87 30-55 (353)
457 1ega_A Protein (GTP-binding pr 94.9 0.014 4.7E-07 50.3 2.9 26 61-86 6-31 (301)
458 3kfv_A Tight junction protein 94.8 0.098 3.4E-06 45.4 8.3 91 66-188 148-240 (308)
459 2qag_B Septin-6, protein NEDD5 94.8 0.016 5.5E-07 52.7 3.4 23 64-86 43-65 (427)
460 2oap_1 GSPE-2, type II secreti 94.8 0.01 3.6E-07 55.1 2.1 26 62-87 259-284 (511)
461 3e1s_A Exodeoxyribonuclease V, 94.8 0.017 5.9E-07 54.4 3.5 25 63-87 204-228 (574)
462 2ffh_A Protein (FFH); SRP54, s 94.7 0.019 6.6E-07 52.1 3.8 26 62-87 97-122 (425)
463 3iby_A Ferrous iron transport 94.7 0.015 5.2E-07 48.9 2.9 23 64-86 2-24 (256)
464 3bh0_A DNAB-like replicative h 94.7 0.02 6.9E-07 49.6 3.7 26 62-87 67-92 (315)
465 4dhe_A Probable GTP-binding pr 94.7 0.0089 3.1E-07 48.1 1.2 26 61-86 27-52 (223)
466 1tq4_A IIGP1, interferon-induc 94.7 0.018 6E-07 52.2 3.2 25 62-86 68-92 (413)
467 2yc2_C IFT27, small RAB-relate 94.6 0.0071 2.4E-07 47.8 0.5 25 62-86 19-43 (208)
468 2r6a_A DNAB helicase, replicat 94.6 0.021 7.3E-07 51.9 3.7 26 62-87 202-227 (454)
469 1u0l_A Probable GTPase ENGC; p 94.6 0.015 5E-07 50.1 2.5 23 63-85 169-191 (301)
470 2qnr_A Septin-2, protein NEDD5 94.6 0.016 5.5E-07 49.9 2.6 24 62-85 17-40 (301)
471 1ni3_A YCHF GTPase, YCHF GTP-b 94.5 0.02 6.9E-07 51.5 3.3 25 61-85 18-42 (392)
472 4dkx_A RAS-related protein RAB 94.5 0.023 7.9E-07 46.5 3.4 27 60-86 10-36 (216)
473 1tf7_A KAIC; homohexamer, hexa 94.5 0.018 6.2E-07 53.4 3.0 22 62-83 38-59 (525)
474 3i8s_A Ferrous iron transport 94.5 0.022 7.4E-07 48.3 3.2 24 63-86 3-26 (274)
475 3iev_A GTP-binding protein ERA 94.5 0.02 6.8E-07 49.4 3.0 27 60-86 7-33 (308)
476 3th5_A RAS-related C3 botulinu 93.5 0.0069 2.3E-07 48.3 0.0 25 61-85 28-52 (204)
477 2obl_A ESCN; ATPase, hydrolase 94.4 0.024 8.1E-07 50.1 3.5 28 61-88 69-96 (347)
478 1mky_A Probable GTP-binding pr 94.4 0.024 8.2E-07 51.3 3.5 25 62-86 179-203 (439)
479 3io5_A Recombination and repai 94.4 0.025 8.6E-07 49.6 3.5 29 57-87 24-52 (333)
480 4djt_A GTP-binding nuclear pro 94.4 0.0087 3E-07 48.1 0.5 25 61-85 9-33 (218)
481 1xp8_A RECA protein, recombina 94.2 0.027 9.2E-07 50.1 3.4 35 62-96 73-112 (366)
482 2dpy_A FLII, flagellum-specifi 94.2 0.026 8.9E-07 51.4 3.4 28 61-88 155-182 (438)
483 1tf7_A KAIC; homohexamer, hexa 94.2 0.027 9.3E-07 52.2 3.5 26 62-87 280-305 (525)
484 3b5x_A Lipid A export ATP-bind 94.2 0.024 8.2E-07 53.3 3.2 26 62-87 368-393 (582)
485 1yqt_A RNAse L inhibitor; ATP- 94.2 0.025 8.6E-07 52.8 3.3 27 61-87 45-71 (538)
486 3j16_B RLI1P; ribosome recycli 94.1 0.03 1E-06 53.1 3.7 29 59-87 99-127 (608)
487 3b60_A Lipid A export ATP-bind 94.1 0.022 7.4E-07 53.6 2.7 26 62-87 368-393 (582)
488 2yl4_A ATP-binding cassette SU 94.1 0.024 8.2E-07 53.5 2.9 26 62-87 369-394 (595)
489 3r7w_A Gtpase1, GTP-binding pr 94.0 0.029 1E-06 48.3 3.2 25 62-86 2-26 (307)
490 2aka_B Dynamin-1; fusion prote 94.0 0.028 9.7E-07 47.4 3.0 25 62-86 25-49 (299)
491 2j9r_A Thymidine kinase; TK1, 94.0 0.044 1.5E-06 45.2 4.0 27 61-87 26-52 (214)
492 3qf4_B Uncharacterized ABC tra 94.0 0.026 8.9E-07 53.3 2.9 27 62-88 380-406 (598)
493 1h65_A Chloroplast outer envel 93.9 0.032 1.1E-06 46.9 3.1 25 62-86 38-62 (270)
494 3tsz_A Tight junction protein 93.9 0.2 6.9E-06 44.8 8.6 99 61-187 230-330 (391)
495 1t9h_A YLOQ, probable GTPase E 93.9 0.011 3.7E-07 51.5 0.1 24 62-85 172-195 (307)
496 2e87_A Hypothetical protein PH 93.9 0.032 1.1E-06 49.1 3.2 25 62-86 166-190 (357)
497 3o47_A ADP-ribosylation factor 93.9 0.031 1.1E-06 48.7 3.1 25 61-85 163-187 (329)
498 2q6t_A DNAB replication FORK h 93.9 0.037 1.3E-06 50.2 3.6 26 62-87 199-224 (444)
499 2dby_A GTP-binding protein; GD 93.8 0.029 9.8E-07 50.0 2.7 24 64-87 2-25 (368)
500 2qag_C Septin-7; cell cycle, c 93.8 0.027 9.2E-07 51.0 2.6 25 62-86 30-54 (418)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=5.1e-43 Score=293.10 Aligned_cols=166 Identities=28% Similarity=0.425 Sum_probs=155.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|||||||||+|++|+++||++|||+||++|+++..+|++|..+++++.+|.++||+++.+++.+++.+ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999865 3
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC--------CCCCcH
Q 026464 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF--------SAADAA 210 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~--------~~dd~~ 210 (238)
.||||||||||..||+.|+.. ..++.||+|+||++++.+|+.+|+.|+.||+.||..+.+| +.||++
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~ 155 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP 155 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence 689999999999999999754 3689999999999999999999999999999999887765 468899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 211 SAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 211 e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
+.+++|++.|++++.|+++||++.
T Consensus 156 e~i~~Rl~~Y~~~t~pl~~~Y~~~ 179 (206)
T 3sr0_A 156 EVIKKRLEVYREQTAPLIEYYKKK 179 (206)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999874
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.8e-40 Score=281.27 Aligned_cols=170 Identities=24% Similarity=0.433 Sum_probs=157.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
.-++..|+|+|||||||+|+.|+++||++|||+++++|+++..++++|+.+++++.+|.++||+++.+++.++|.+..+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~- 85 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC- 85 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG-
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc-
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC---------------C
Q 026464 142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------S 205 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~ 205 (238)
..|||||||||+..|++.|++. ..+|.||+|++|++++.+|+.+|++|+.||+.||+.+.|| +
T Consensus 86 -~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 86 -ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred -CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 4799999999999999999765 4789999999999999999999999999999999887765 4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 026464 206 AADAASAWKEKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 206 ~dd~~e~v~~Rl~~y~~~~~~l~~~y~~ 233 (238)
.||++|.+++||+.|++++.|+++||++
T Consensus 165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~ 192 (230)
T 3gmt_A 165 DDDKEETVKKRLDVYEAQTKPLITYYGD 192 (230)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999986
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=2.5e-39 Score=272.68 Aligned_cols=161 Identities=25% Similarity=0.368 Sum_probs=145.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
.++.+|+|+|||||||||+|++|+++||++|||+||++|+++..+|++|+.+++++.+|.+|||+++.+++.++|.+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999976433
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHH
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~ 219 (238)
...||||||||||..|++.|+.. ..++.||+|+||++++.+|+.+|+.+. .+.||++|.+++|++.
T Consensus 107 -~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~------------~R~DD~~e~i~~Rl~~ 173 (217)
T 3umf_A 107 -KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETS------------NRVDDNEETIVKRFRT 173 (217)
T ss_dssp -TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------------------CHHHHHHHHHHHHH
T ss_pred -cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccC------------CCCCCCHHHHHHHHHH
Confidence 36799999999999999999765 578999999999999999999997533 1568899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 026464 220 YAEQVRDATLFYLLF 234 (238)
Q Consensus 220 y~~~~~~l~~~y~~~ 234 (238)
|++++.|+++||+++
T Consensus 174 Y~~~t~pl~~~Y~~~ 188 (217)
T 3umf_A 174 FNELTKPVIEHYKQQ 188 (217)
T ss_dssp HHHHTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=4.4e-34 Score=243.91 Aligned_cols=172 Identities=26% Similarity=0.394 Sum_probs=158.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
.++++|+|+|||||||||+|+.|++++|++|+|+++++|+.+..++++|+.+++++.+|..+|++++..++..++....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~- 105 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ- 105 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC----------
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------- 205 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~---------- 205 (238)
...+||+||||++..|++.|++. ..+|.||+|++|++++.+|+.+|+.|+.||+.||+.+.+|.
T Consensus 106 -~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 106 -CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp -GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred -ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 36899999999999999998764 46899999999999999999999999999999998877662
Q ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 206 -----AADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 206 -----~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
.||+++.+++|++.|++++.++++||++.
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~ 218 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNK 218 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999863
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=3.5e-32 Score=226.67 Aligned_cols=169 Identities=28% Similarity=0.424 Sum_probs=155.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.++.+.+++.+|..+|++++..++..++.... .+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD--CE 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--cc
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999998653 36
Q ss_pred ceEEEcCCcCCHHHHHHHHhhc-----CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC-------------
Q 026464 144 SGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS------------- 205 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~------------- 205 (238)
.+||+||||++..|++.+.+.. .+|.+|+|++|++++.+|+.+|+.|+.||+.||+.+.+|.
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence 7999999999999999887642 4899999999999999999999999999999998877653
Q ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 206 --AADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 206 --~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
.+|+++.+++|++.|++++.++.+||.+.
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~ 189 (216)
T 3dl0_A 159 QRADDNEETVTKRLEVNMKQTAPLLDFYDEK 189 (216)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999864
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.98 E-value=1.6e-31 Score=222.48 Aligned_cols=169 Identities=27% Similarity=0.419 Sum_probs=154.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.++.+.+++.+|..+|++++..++..++.... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999998653 25
Q ss_pred ceEEEcCCcCCHHHHHHHHhhc-----CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC-------------
Q 026464 144 SGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS------------- 205 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~------------- 205 (238)
.+||+||||++..|++.+.+.. .+|.+|+|++|++++.+|+.+|+.|+.||+.||+.+.+|.
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence 7999999999999999887642 4899999999999999999999999999999998887653
Q ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 206 --AADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 206 --~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
.+|+++.+++|++.|.+++.++.+||.+.
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~ 189 (216)
T 3fb4_A 159 QRIDDKPETVKNRLDVNMKQTQPLLDFYSQK 189 (216)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHcC
Confidence 46779999999999999999999999863
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=6.7e-31 Score=219.94 Aligned_cols=170 Identities=23% Similarity=0.385 Sum_probs=150.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++++|+|+|+|||||||+|+.|++++|++++++++++++....++++|+.+++++.+|..+|++.+.+++..++....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-- 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGV-- 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--
Confidence 567899999999999999999999999999999999999888888899999999999999999999999998887642
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC-----------
Q 026464 142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS----------- 205 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~----------- 205 (238)
.+.+||+||||++..|++.+.+. ..||.+|+|++|++++.+|+.+|+.++.||+.||+.+.+|.
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 161 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEP 161 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccc
Confidence 35789999999999999888642 36899999999999999999999988899999998776553
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 026464 206 ----AADAASAWKEKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 206 ----~dd~~e~v~~Rl~~y~~~~~~l~~~y~~ 233 (238)
.+|..+.+++|+..|.+++.|+++||++
T Consensus 162 l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~ 193 (217)
T 3be4_A 162 LVWRDDDNAEAVKVRLDVFHKQTAPLVKFYED 193 (217)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456899999999999999999999975
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.97 E-value=2.9e-30 Score=218.32 Aligned_cols=173 Identities=29% Similarity=0.434 Sum_probs=153.2
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcc
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~ 138 (238)
.+.+++.|+|+|+|||||||+|+.|+++++++++++++++++.+..++++|+.+++++..|..++++++.+++..++...
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP 91 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 34567899999999999999999999999999999999999988888899999999999999999999999999988765
Q ss_pred cccCCceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC--------
Q 026464 139 YYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-------- 205 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~-------- 205 (238)
. .+.|||+||||++..|++.|.++ ..+|++|+|++|++++.+|+.+|..++.||+.||+.+.+|.
T Consensus 92 ~--~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~ 169 (233)
T 1ak2_A 92 P--CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDIT 169 (233)
T ss_dssp G--GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTT
T ss_pred c--ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccc
Confidence 3 25789999999999999877654 25899999999999999999999999999999998765542
Q ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 026464 206 -------AADAASAWKEKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 206 -------~dd~~e~v~~Rl~~y~~~~~~l~~~y~~ 233 (238)
.||.++.+++|++.|.+.+.|+++||.+
T Consensus 170 ~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~ 204 (233)
T 1ak2_A 170 GEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSK 204 (233)
T ss_dssp CCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999974
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.97 E-value=4.3e-30 Score=214.97 Aligned_cols=170 Identities=28% Similarity=0.407 Sum_probs=151.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHH-cccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE-EGYY 140 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~-~~~~ 140 (238)
++++|+|+|+|||||||+|+.|++++|++++++|+++++....+++.|..+++++.+|..+|++.+..++..++. ...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~- 81 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA- 81 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc-
Confidence 568899999999999999999999999999999999999888889999999999999999999999999988887 332
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC----------
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------- 205 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~---------- 205 (238)
.+.+||+||||++..|++.|... ..+|++|+|++|++++.+|+.+|..++.||+.||+.+.+|.
T Consensus 82 -~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~ 160 (220)
T 1aky_A 82 -CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE 160 (220)
T ss_dssp -GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred -cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccc
Confidence 35689999999999998877543 36899999999999999999999988999999998765542
Q ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 026464 206 -----AADAASAWKEKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 206 -----~dd~~e~v~~Rl~~y~~~~~~l~~~y~~ 233 (238)
.+|+++.+++|++.|.+...|+++||++
T Consensus 161 ~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~ 193 (220)
T 1aky_A 161 ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKK 193 (220)
T ss_dssp BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999975
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.97 E-value=2.7e-30 Score=215.49 Aligned_cols=168 Identities=24% Similarity=0.430 Sum_probs=150.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.|+.+++++.+|..+|++++..++..++.... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence 3689999999999999999999999999999999999888788889999999999999999999999999887653 24
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCC---------------CCC
Q 026464 144 SGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA 207 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~d 207 (238)
.+||+||||++..|+..|... ..+|++|+|++|++++++|+.+|..++.||+.||+.+.+| +.+
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~d 158 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKD 158 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTT
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCC
Confidence 689999999999999888654 4689999999999999999999988888999999876554 345
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhh
Q 026464 208 DAASAWKEKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 208 d~~e~v~~Rl~~y~~~~~~l~~~y~~ 233 (238)
|+++.+++|++.|.+++.++++||.+
T Consensus 159 d~~~~~~~rl~~y~~~~~~l~~~~~~ 184 (214)
T 1e4v_A 159 DQEETVRKRLVEYHQMTAPLIGYYSK 184 (214)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999975
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.96 E-value=2.9e-29 Score=211.08 Aligned_cols=167 Identities=21% Similarity=0.358 Sum_probs=148.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
++|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.|+.+++++.+|..+|++.+.+++...+... . +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence 468999999999999999999999999999999999988888999999999999999999999999999888763 1 5
Q ss_pred ceEEEcCCcCCHHHHHHHHhh-----cCCCEEEEEecCHHHHHHHHhcCCCCCC-CccccccCCCCCC------------
Q 026464 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSP-HKEFLRLGGARFS------------ 205 (238)
Q Consensus 144 ~g~IlDGfPrt~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~-~~~~~~~~~~~~~------------ 205 (238)
.+||+||||++..|++.|.+. ..||++|+|++|++++.+|+.+|+.++. ||+.||+.+.+|.
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~ 157 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGA 157 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCB
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccc
Confidence 789999999999999988653 3689999999999999999999988776 9999998776543
Q ss_pred ----CCCcHH-HHHHHHHHHHHHHHHHHH---HHhh
Q 026464 206 ----AADAAS-AWKEKFRIYAEQVRDATL---FYLL 233 (238)
Q Consensus 206 ----~dd~~e-~v~~Rl~~y~~~~~~l~~---~y~~ 233 (238)
.||+++ .+++|+..|++.+.|+.+ +|.+
T Consensus 158 l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~ 193 (223)
T 2xb4_A 158 LSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKN 193 (223)
T ss_dssp EECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhh
Confidence 234567 999999999999999999 9986
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.96 E-value=1.2e-28 Score=207.33 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=149.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
+++.|+|+|+|||||||+|+.|++++|++++++|+++++....++++|+.+++++.+|..++++....++..++.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--- 82 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--- 82 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc---
Confidence 56789999999999999999999999999999999999988788899999999999999999998888888888752
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC---------------C
Q 026464 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------------A 206 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~---------------~ 206 (238)
.+.+||+||||++..|++.+.....++.+|+|++|++++.+|+.+|..++.||+.||+...+|. .
T Consensus 83 ~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~ 162 (227)
T 1zd8_A 83 TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE 162 (227)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence 2478999999999999988887778899999999999999999999888888888887665432 2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 026464 207 ADAASAWKEKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 207 dd~~e~v~~Rl~~y~~~~~~l~~~y~~ 233 (238)
++..+.+++|+..|++.+.++++||++
T Consensus 163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~ 189 (227)
T 1zd8_A 163 DDKPETVIKRLKAYEDQTKPVLEYYQK 189 (227)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457899999999999999999999974
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.96 E-value=2.3e-28 Score=204.70 Aligned_cols=172 Identities=22% Similarity=0.343 Sum_probs=150.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
+++.|+|+|+|||||||+++.|+++++++++++|+++++....++..|..+++++.+|..+|++.+..++..++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 82 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA- 82 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence 5678999999999999999999999999999999999988777889999999999999999999988888877764322
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCC-----------CCCc
Q 026464 142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-----------AADA 209 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~-----------~dd~ 209 (238)
...+||+||||++..|++.+... ..++++|+|+++++++.+|+.+|..++.||+.|++...+|. .+|.
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~ 162 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT 162 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence 24689999999999999888764 35899999999999999999999888889999987765542 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 210 ASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 210 ~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
.+.+++|++.|..+..++.++|++.
T Consensus 163 ~~~i~~Rl~~~~~~~~~l~~~y~~~ 187 (222)
T 1zak_A 163 EEKVKLRLETYYQNIESLLSTYENI 187 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999754
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.93 E-value=2.1e-25 Score=183.79 Aligned_cols=156 Identities=29% Similarity=0.490 Sum_probs=135.8
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
+.+++.|+|+|+|||||||+|+.|++++|++++++++++++.+..++..|..+++++.+|..++++....++..++....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 96 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD 96 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence 35678999999999999999999999999999999999998888888999999999999999999998888888776532
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHhhc-----CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHH
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK 214 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~ 214 (238)
.+.+||+||+|++..|++.+.... .++.+|+|++|++++.+|+.+|.. .+++++.++
T Consensus 97 --~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r----------------~~~~~e~~~ 158 (201)
T 2cdn_A 97 --AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR----------------ADDTDDVIL 158 (201)
T ss_dssp --GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC----------------TTCSHHHHH
T ss_pred --CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC----------------CCCCHHHHH
Confidence 357899999999999988776532 489999999999999999998741 245788999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026464 215 EKFRIYAEQVRDATLFYLL 233 (238)
Q Consensus 215 ~Rl~~y~~~~~~l~~~y~~ 233 (238)
+|++.|.+...++.++|..
T Consensus 159 ~r~~~~~~~~~~~~~~~~~ 177 (201)
T 2cdn_A 159 NRMKVYRDETAPLLEYYRD 177 (201)
T ss_dssp HHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHhcC
Confidence 9999999999999988854
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.92 E-value=2.3e-24 Score=175.79 Aligned_cols=159 Identities=23% Similarity=0.381 Sum_probs=136.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|+|+|||||||+|+.|++++|+++++++++++.....++..|+.+.+++.+|..++++.+..++...+.... .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV-N 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-c
Confidence 567899999999999999999999999999999999998877788999999999999999999988888887776532 2
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y 220 (238)
.+.++|+||+|++..|++.+... ..++.+|+|++|++++.+|+.+|.... .+.+++++.+.+|++.|
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~ 154 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETS------------GRVDDNEETIKKRLETY 154 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSS------------SCGGGSHHHHHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcC------------CCCCCCHHHHHHHHHHH
Confidence 35789999999999998877654 568999999999999999998875311 12345678999999999
Q ss_pred HHHHHHHHHHHhh
Q 026464 221 AEQVRDATLFYLL 233 (238)
Q Consensus 221 ~~~~~~l~~~y~~ 233 (238)
.....++.++|++
T Consensus 155 ~~~~~~~~~~~~~ 167 (196)
T 2c95_A 155 YKATEPVIAFYEK 167 (196)
T ss_dssp HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.92 E-value=1.5e-24 Score=178.62 Aligned_cols=162 Identities=26% Similarity=0.426 Sum_probs=135.4
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhc-CCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcc
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~-~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~ 138 (238)
+.++..|+|+|+|||||||+|+.|++++|++++++|+++++.. ..++.+++.+++++.+|...|+++...++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 4577899999999999999999999999999999999999864 356778889999999999999988888887776543
Q ss_pred cccCCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHH
Q 026464 139 YYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl 217 (238)
...+..+||+||+|++..++..|+.. ..+|++|+|++|++++.+|+.+|.... .+.+++.+.+++|+
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~------------~~~~~~~e~~~~r~ 159 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS------------GRSDDNIESIKKRF 159 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH------------CCTTCSHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHH
Confidence 22333689999999999999888764 358999999999999999998875210 02356788999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 026464 218 RIYAEQVRDATLFYLL 233 (238)
Q Consensus 218 ~~y~~~~~~l~~~y~~ 233 (238)
..|.+...|+.++|+.
T Consensus 160 ~~~~~~~~~~~~~~~~ 175 (203)
T 1ukz_A 160 NTFKETSMPVIEYFET 175 (203)
T ss_dssp HHHHHTTHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHh
Confidence 9999999999998864
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=174.75 Aligned_cols=159 Identities=26% Similarity=0.434 Sum_probs=135.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|+|+|||||||+|+.|++++|++++++++++++....+++.+..+.+++.+|..++++.+..++.+.+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence 456899999999999999999999999999999999998876778889999999999999999988888877776432 2
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhc-CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl~~y 220 (238)
.+.++|+||+|.+..|+..+.... .+|++|+|++|++++.+|+.+|.... .+.+++.+.+.+|++.|
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~ 157 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS------------LPVDDTTKTIAKRLEAY 157 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC------------SCHHHHHHHHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC------------CCCCCCHHHHHHHHHHH
Confidence 357899999999999988776543 68999999999999999999986411 12344578899999999
Q ss_pred HHHHHHHHHHHhh
Q 026464 221 AEQVRDATLFYLL 233 (238)
Q Consensus 221 ~~~~~~l~~~y~~ 233 (238)
.....++.++|.+
T Consensus 158 ~~~~~~~~~~~~~ 170 (199)
T 2bwj_A 158 YRASIPVIAYYET 170 (199)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.92 E-value=3.9e-24 Score=173.43 Aligned_cols=153 Identities=27% Similarity=0.480 Sum_probs=130.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.|..+.+++.+|..++++.+..++...+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 567899999999999999999999999999999999998877788999999999999999999988887776553
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhc-----CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQIV-----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~R 216 (238)
.++|+||+|++..|+..+.... .++.+|+|++|++++.+|+.+|.... + +.+++++.+++|
T Consensus 78 --~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~--~----------r~~~~~~~~~~r 143 (186)
T 3cm0_A 78 --ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELE--G----------RSDDNEETVRRR 143 (186)
T ss_dssp --SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHH--T----------CSSCCHHHHHHH
T ss_pred --CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccC--C----------CCCCCHHHHHHH
Confidence 2499999999998887665431 37899999999999999998874100 0 235678899999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026464 217 FRIYAEQVRDATLFYLL 233 (238)
Q Consensus 217 l~~y~~~~~~l~~~y~~ 233 (238)
++.|.+...|+.++|.+
T Consensus 144 ~~~~~~~~~~l~~~~~~ 160 (186)
T 3cm0_A 144 LEVYREKTEPLVGYYEA 160 (186)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999975
No 19
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.92 E-value=1.1e-23 Score=170.91 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=135.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|+|+|||||||+|+.|++++|++++++|+++++....+++.+..+.+++.+|...+++....++...+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 56789999999999999999999999999999999999887677888999999999999999998888888887653
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl 217 (238)
.+.++|+||+|++..+...+... ..+|++|+|++|++++.+|+.+|.... .+.+++.+.+++|+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~~ri 149 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESS------------GRSDDNIESIKKRF 149 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTS------------CCTTCSHHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHH
Confidence 35789999999999988877543 257899999999999999999875311 13466788999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 026464 218 RIYAEQVRDATLFYLL 233 (238)
Q Consensus 218 ~~y~~~~~~l~~~y~~ 233 (238)
+.|.++..++.++|..
T Consensus 150 ~~~~~~~~~~~~~~~~ 165 (194)
T 1qf9_A 150 NTFNVQTKLVIDHYNK 165 (194)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHh
Confidence 9999999999999864
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.91 E-value=1.1e-23 Score=171.12 Aligned_cols=161 Identities=22% Similarity=0.407 Sum_probs=130.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC-CCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc-
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY- 139 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~-~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~- 139 (238)
++..|+|+|+|||||||+|+.|++++|++++++|+++++... ..+.+++.+++++.+|..+++++...++...+....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 367899999999999999999999999999999999988653 456778889999999999999887777766554321
Q ss_pred -ccCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHH
Q 026464 140 -YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK 214 (238)
Q Consensus 140 -~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~ 214 (238)
...+.+||+||+|++..+...+... ..++.+|+|++|++++.+|+.+|.... .+.+++.+.++
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~ 149 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS------------GRSDDNRESLE 149 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS------------SCCSCCHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccC------------CCCCCCHHHHH
Confidence 1235789999999999887765432 247899999999999999998875211 13456788999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 026464 215 EKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 215 ~Rl~~y~~~~~~l~~~y~~~ 234 (238)
+|+..|.+...|++++|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~y~~~ 169 (196)
T 1tev_A 150 KRIQTYLQSTKPIIDLYEEM 169 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHhc
Confidence 99999999999999999864
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.88 E-value=2e-21 Score=165.13 Aligned_cols=171 Identities=25% Similarity=0.372 Sum_probs=140.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
.++.+|+|+|+|||||||+++.|++++|+.+++.|++++......+..+..+..++.++..+|+..+.+.+...+...
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-- 102 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-- 102 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Confidence 356789999999999999999999999999999999998765556678888888888999999988888887766542
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCCCCcccccc-CCCC-----------C---C
Q 026464 141 RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRL-GGAR-----------F---S 205 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~-~~~~-----------~---~ 205 (238)
.+.+|++||+|++..|++.+.....++++|+|++|++++.+|+.+|..++.+|+.+.+ ...| | .
T Consensus 103 -~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~l 181 (246)
T 2bbw_A 103 -RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQ 181 (246)
T ss_dssp -TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCC
T ss_pred -CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccC
Confidence 2468999999999888888776667899999999999999999988777667765443 1111 1 1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026464 206 AADAASAWKEKFRIYAEQVRDATLFYLLF 234 (238)
Q Consensus 206 ~dd~~e~v~~Rl~~y~~~~~~l~~~y~~~ 234 (238)
.+++.+.+.+++..|.++..++++||.+.
T Consensus 182 d~~~~~~i~~~l~~~~~~~~~v~~~~~~~ 210 (246)
T 2bbw_A 182 EDDKPEAVAARLRQYKDVAKPVIELYKSR 210 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 23467899999999999999999999763
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.72 E-value=5.7e-17 Score=128.45 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCC----ChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~----s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
+.|+|+|+|||||||+|+.| +++|++++++++++++..... ...+.....+... .+++....++...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--
Confidence 57899999999999999999 999999999999999865421 2233333333322 1244556666666643
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHhhc-CCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..+..+|+||+ ++..|.+.+.+.. .++.+|+|++|.+++.+|+..|..
T Consensus 76 -~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 76 -SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLR 124 (179)
T ss_dssp -CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-
T ss_pred -cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccC
Confidence 23578999999 9999999987764 678999999999999999999863
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.65 E-value=4e-15 Score=118.92 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH-HhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSK-LLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~-~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
+..|+|.|+|||||||+|+.|++ .+|+.+++.+ .+++.+...+. +. ...+...+.....+++..++...+... .
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSC--S
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 56899999999999999999999 6899999985 45554332111 00 000000000011223444555555321 2
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl 217 (238)
.+.++|+||++.+..+.+.+.+. +.+..+|+|++|.+++.+|+.+|... +..++.+++++
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~----------------~~~~~~i~~~~ 140 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK----------------AVPIDVLRSMY 140 (181)
T ss_dssp SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG----------------CCCHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC----------------CCCHHHHHHHH
Confidence 35789999999998877766543 23457999999999999999988631 23567889999
Q ss_pred HHHHHH
Q 026464 218 RIYAEQ 223 (238)
Q Consensus 218 ~~y~~~ 223 (238)
+.|.+.
T Consensus 141 ~~~~~~ 146 (181)
T 1ly1_A 141 KSMREY 146 (181)
T ss_dssp HHHHHH
T ss_pred HHhhcc
Confidence 988876
No 24
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.63 E-value=8.3e-15 Score=118.44 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHH-----------H
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-----------A 129 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~-----------~ 129 (238)
+.|+|+|+|||||||+++.|++++ |++++++++ ...+..|+.+++++.+|...++.... +
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999998 999998853 33467888888888888766653321 1
Q ss_pred HHHHHHHcccccCCceEEEc----------CCcCCHH--HHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 130 LLSKRLEEGYYRGESGFILD----------GIPRTRI--QAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlD----------GfPrt~~--qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
++...+. .+..+|+| |+|+... +...+..+ ..+|++|+|++|++++.+|+.+|.
T Consensus 75 ~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~ 144 (195)
T 2pbr_A 75 KIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN 144 (195)
T ss_dssp THHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT
T ss_pred HHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC
Confidence 2222232 23557777 7777543 44333221 268999999999999999998653
No 25
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.60 E-value=8.5e-15 Score=123.50 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHH-HHHHHHcc
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRLEEG 138 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~l-l~~~l~~~ 138 (238)
+.++..|+|.|+|||||||+++.|++.++. .+.+ +....+..++.|+.+++++.+|...++....-+ ...+....
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~---~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~ 98 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV---IMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHL 98 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE---EEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHC
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc---eeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999974 3221 222345678999999999998886554433222 12222210
Q ss_pred ------cccCCceEEEc----------CCcCCHHHHH--HHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 139 ------YYRGESGFILD----------GIPRTRIQAE--ILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 139 ------~~~~~~g~IlD----------GfPrt~~qa~--~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
....+..+|+| |+|++..+.. .+..+ ..||++|+|++|++++.+|+.+|+
T Consensus 99 ~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~ 170 (229)
T 4eaq_A 99 VLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNS 170 (229)
T ss_dssp CCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 01134678999 9998876553 34332 479999999999999999999985
No 26
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.57 E-value=2.8e-15 Score=130.19 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
+..|+|.|+|||||||+++.|++++ |+.+++.| .+++.+...+. |.. ..+...+...+.+.+.+++...+... .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 4679999999999999999999985 99999998 55554332111 000 00000000011223334444444210 2
Q ss_pred CCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCCCcHHHHHHHH
Q 026464 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~Rl 217 (238)
.+.++|+||++.+..+.+.+.+. +.++.+|+|++|.+++.+|+.+|..+ +..++.+++++
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~----------------~~~~e~i~~~~ 140 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK----------------AVPIDVLRSMY 140 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG----------------CCCHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC----------------CCCHHHHHHHH
Confidence 35789999999998777776543 23458999999999999999998632 23468999999
Q ss_pred HHHHHHH
Q 026464 218 RIYAEQV 224 (238)
Q Consensus 218 ~~y~~~~ 224 (238)
+.|++..
T Consensus 141 ~~~~~~~ 147 (301)
T 1ltq_A 141 KSMREYL 147 (301)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 9988764
No 27
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.56 E-value=3.1e-14 Score=114.76 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCC--hHHHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP--EDVIFALLSKRL 135 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vp--d~~i~~ll~~~l 135 (238)
++.|+|.|+|||||||+++.|+++++ ++++++++++++........ .... .-....+ ...+...+.+.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRD---QMRKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGG---GGSSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHH---HHhcCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998 99999999988643210000 0000 0011111 112222333333
Q ss_pred HcccccCCceEEEcCCcCCHHHH--------HHHHhhcCCCEEEEEecCHHHHHH-HHhc
Q 026464 136 EEGYYRGESGFILDGIPRTRIQA--------EILDQIVDVDLVINFKSIEDQLVK-RNLE 186 (238)
Q Consensus 136 ~~~~~~~~~g~IlDGfPrt~~qa--------~~l~~~~~~d~vI~L~~~~e~l~~-Rl~~ 186 (238)
... .....+|+||++....++ ..+... .++++|+|++|++++.+ |+..
T Consensus 79 ~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 79 AEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp HHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTS
T ss_pred Hhh--ccCCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhh
Confidence 321 124579999986522111 222222 57899999999999996 8987
No 28
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.6e-14 Score=118.55 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHc-CCCCChHHHHHHHHHHHHccc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~-g~~vpd~~i~~ll~~~l~~~~ 139 (238)
.++..|+|+|+|||||||+++.|++.+|+++++.++++++.... . +.+++.. |.....++...++.. +.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~--~----i~~~~~~~~~~~~~~~e~~~l~~-l~--- 92 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHK--T----VGELFTERGEAGFRELERNMLHE-VA--- 92 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--C----HHHHHHHHHHHHHHHHHHHHHHH-HT---
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCC--c----HHHHHHhcChHHHHHHHHHHHHH-Hh---
Confidence 35678999999999999999999999999999999988764321 1 2222211 111111122222222 21
Q ss_pred ccCCceEEEc---CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHh-cCCCCCCCccccccCCCCCCCCCcHHHHHH
Q 026464 140 YRGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL-ESEAFSPHKEFLRLGGARFSAADAASAWKE 215 (238)
Q Consensus 140 ~~~~~g~IlD---GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~-~R~~~~~~~~~~~~~~~~~~~dd~~e~v~~ 215 (238)
...++|++ |.+......+.+.+ ++.+|+|++|.+++.+|+. .|...+. ..+++.+.+.+
T Consensus 93 --~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp~------------~~~~~~~~~~~ 155 (199)
T 3vaa_A 93 --EFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVLFRRLRIAKQQRPI------------LQGKEDDELMD 155 (199)
T ss_dssp --TCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHHHHHHHHTGGGCGG------------GTTCCHHHHHH
T ss_pred --hcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHHHHHHhcCCCCCCC------------cCCCChhhHHH
Confidence 23568888 66766666555543 5789999999999999998 4432110 11334455566
Q ss_pred HHHHHHHHHHH
Q 026464 216 KFRIYAEQVRD 226 (238)
Q Consensus 216 Rl~~y~~~~~~ 226 (238)
++....+...+
T Consensus 156 ~i~~~~~~r~~ 166 (199)
T 3vaa_A 156 FIIQALEKRAP 166 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555554444
No 29
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.56 E-value=5.8e-14 Score=115.12 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=83.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++.+|+|+|+|||||||+++.|++.+|..+++.+++.... ....+..|....+......+. .+.... .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~-~l~~~~-~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLA-AIGERL-A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHH-HHHHHH-T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHH-HHHHHH-h
Confidence 4678999999999999999999999999999998875321 112233455555443322222 122111 2
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhc-CCCEEEEEecCHHHHHHHHhcCCC
Q 026464 142 GESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.+.++|+|+.+....+.+.+.... .++.+|+|++|.+++.+|+.+|..
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG 133 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS
T ss_pred cCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc
Confidence 356899999888888888776654 457999999999999999998864
No 30
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.53 E-value=3.3e-13 Score=109.41 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHH-------HHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA-------LLSK 133 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~-------ll~~ 133 (238)
+.|+|.|+|||||||+++.|++.+ |++++.+.+ ..+++.|+.+++++..|...|.....- .+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999 999987643 456788999999988777766533221 1122
Q ss_pred HHHcccccCCceEEEc----------CCcCCHHH--HHHHHh----hcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 134 RLEEGYYRGESGFILD----------GIPRTRIQ--AEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 134 ~l~~~~~~~~~g~IlD----------GfPrt~~q--a~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+... ...+..+|+| |+++...+ ...+.. ...||.+|+|++|++++.+|+.+|.
T Consensus 75 -i~~~-l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 143 (197)
T 2z0h_A 75 -IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp -HTTC-----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C
T ss_pred -HHHH-HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC
Confidence 3221 1224567777 55655332 222221 2368999999999999999999883
No 31
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.52 E-value=8.9e-14 Score=112.08 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhc-CCCChHHHHHHHHHHcCCCCCh--HHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPE--DVIFALLSKR 134 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~-~~~s~~g~~i~~~l~~g~~vpd--~~i~~ll~~~ 134 (238)
++.|+|+|+|||||||+++.|+++++ +.+++.++++++.+ ......+. ...+...++ ......+..+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 75 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR-----DEMRKLSVEKQKKLQIDAAKG 75 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH-----HHHTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch-----hhhhcCCHHHHHHHHHHHHHH
Confidence 35799999999999999999999998 88999899887544 21111000 011233343 2223323333
Q ss_pred HHccc-ccCCceEEEcCCcCCHHH--------HHHHHhhcCCCEEEEEecCHHHHHHH-Hhc--CC
Q 026464 135 LEEGY-YRGESGFILDGIPRTRIQ--------AEILDQIVDVDLVINFKSIEDQLVKR-NLE--SE 188 (238)
Q Consensus 135 l~~~~-~~~~~g~IlDGfPrt~~q--------a~~l~~~~~~d~vI~L~~~~e~l~~R-l~~--R~ 188 (238)
+.... ...+..+|+||++....| .+.+... .++.+|+|++|++++.+| +.+ |.
T Consensus 76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~ 140 (194)
T 1nks_A 76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRN 140 (194)
T ss_dssp HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTC
T ss_pred HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 33210 013578999998765444 3344443 589999999999998866 666 64
No 32
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.52 E-value=9.3e-15 Score=120.13 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHH-------H
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK-------R 134 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~-------~ 134 (238)
+++.|+|+|+|||||||+|+.|+++++.+++++ +++++. ..+++.|+.+++++.++..+++.....++.. .
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE 86 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999998888 556643 3457889999999888877886654433321 1
Q ss_pred HHcccccCCceEEEcCCcCC--HHH-------HHHHHh----hcCCCEEEEEecCHHHHHHHHhcC
Q 026464 135 LEEGYYRGESGFILDGIPRT--RIQ-------AEILDQ----IVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 135 l~~~~~~~~~g~IlDGfPrt--~~q-------a~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
+... ...+..+|+|+++.+ ..| .+.+.. ...+|++|+|++|++++.+|+..|
T Consensus 87 i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 151 (212)
T 2wwf_A 87 IKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG 151 (212)
T ss_dssp HHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred HHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence 2111 012467999999864 122 123321 136899999999999999998754
No 33
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.49 E-value=5.4e-14 Score=113.74 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC--CCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS--PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~--~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~ 138 (238)
.++..|+|+|+|||||||+++.|++.+|+++++.+++...... .... ......+.. . --+.+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~--~~~~~~~~~--~-~~~~~~~~~~~~l~-- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSD--REWSRRVGA--T-AIMMLYHTAATILQ-- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCS--HHHHHHHHH--H-HHHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccc--hHHHHHhhH--H-HHHHHHHHHHHHHh--
Confidence 3578899999999999999999999999999999765432111 0000 000000000 0 00111122222232
Q ss_pred cccCCceEEEcCCcCCHHHHHH---HHhh-cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 139 YYRGESGFILDGIPRTRIQAEI---LDQI-VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~~qa~~---l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.+.++|+|+++....+... +... ..++++|+|++|++++.+|+.+|.
T Consensus 76 ---~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 76 ---SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp ---TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ---CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 2468999999843222222 3222 457899999999999999998775
No 34
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.49 E-value=2.4e-13 Score=110.98 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHH--H-----
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS--K----- 133 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~--~----- 133 (238)
+++.|+|+|+|||||||+++.|++++ |++++++.+ ....+..|+.+++++.++..+++... .++. .
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~-----~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF-----PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES-----SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec-----CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 56789999999999999999999999 688887642 12246788889999887765554422 2221 0
Q ss_pred -HHHcccccCCceEEEcCCcCCHH--H------HHHHH---h-hcCCCEEEEEecCHHHHHH
Q 026464 134 -RLEEGYYRGESGFILDGIPRTRI--Q------AEILD---Q-IVDVDLVINFKSIEDQLVK 182 (238)
Q Consensus 134 -~l~~~~~~~~~g~IlDGfPrt~~--q------a~~l~---~-~~~~d~vI~L~~~~e~l~~ 182 (238)
.+... ...+..+|+|+||.+.. | .+.+. . ...+|++|+|++|++++.+
T Consensus 77 ~~i~~~-l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 77 SFIQEQ-LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHHHHH-HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHHHHH-HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence 11111 01246789999987531 1 22222 2 1368999999999998877
No 35
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.46 E-value=1.9e-13 Score=110.80 Aligned_cols=112 Identities=14% Similarity=0.310 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH-hCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCC---ChHHHHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL-LEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV---PEDVIFALLSKRLE 136 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~-~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v---pd~~i~~ll~~~l~ 136 (238)
.++.+|+|+|+|||||||+++.|++. +|++++++|+++++... ....++.. .. ..+ +++...+.+...+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~~----~~-~~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTEL----DT-HIIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHHh----hh-cccCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999 79999999999987421 12222211 11 123 33344444444332
Q ss_pred cccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 137 EGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 137 ~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
. ..++|+|+.... .|.. ..++.+|+|++|.+++.+|+.+|+.
T Consensus 82 ~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~~ 123 (184)
T 1y63_A 82 S-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVLFERLTKRQY 123 (184)
T ss_dssp S-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred c-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHHHHHHHhCCC
Confidence 1 357889876432 1211 2367999999999999999999863
No 36
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.45 E-value=6e-13 Score=107.21 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHH-HcCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l-~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
++|+|+|+|||||||+|+.|++++|+++++.|+++++.... . +.+.+ ..|.....+....++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----- 71 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--S----IADIFATDGEQEFRRIEEDVVRAALAD----- 71 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--C----HHHHHHHHCHHHHHHHHHHHHHHHHHH-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--C----HHHHHHHhChHHHHHHHHHHHHHHHhc-----
Confidence 46999999999999999999999999999999988865321 1 11222 233322333333444432222
Q ss_pred CceEEEcC--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 143 ESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 143 ~~g~IlDG--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+|.+| +.......+.+. .+.+|+|++|.+++.+|+.+|.
T Consensus 72 ~~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 72 HDGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp CCSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHHHHHTTCCC
T ss_pred CCeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHHHHHHhCCC
Confidence 12233334 222222223332 5689999999999999998875
No 37
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.45 E-value=2.5e-13 Score=107.69 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccccC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
++|+|+|+|||||||+++.|++++|+++++++++.++.. |..+.+++. .|....+++...++ ..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~~----- 68 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLSE----- 68 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHTT-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHhc-----
Confidence 468999999999999999999999999999999987643 222333332 22211111112222 22321
Q ss_pred CceEEEc-C--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 143 ~~g~IlD-G--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+|++ | .+......+.+. .++.+|+|++|++++.+|+.+|.
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTT
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCC
Confidence 3456665 4 233434444443 36899999999999999998874
No 38
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.44 E-value=5.7e-13 Score=109.46 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHH-----------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL----------- 130 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~l----------- 130 (238)
+++.|+|+|+|||||||+++.|+++++..++++. .+++. ..++..+..+++++..+..+++.....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 85 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL 85 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999987777773 33332 2246788889998887766666533211
Q ss_pred HHHHHHcccccCCceEEEcCC-----cCCHH----HHHHHHhh----cCCCEEEEEecCHHHHHHHHhcC
Q 026464 131 LSKRLEEGYYRGESGFILDGI-----PRTRI----QAEILDQI----VDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGf-----Prt~~----qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
+...+. .+..+|+|.+ |+... ..+.+... ..+|++|+|++|++++.+|+..|
T Consensus 86 i~~~l~-----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 86 IKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHH-----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 222222 2457888943 22211 12333222 35899999999999999999643
No 39
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.44 E-value=1.7e-12 Score=106.57 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=71.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCC-----CC--------------
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VP-------------- 123 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~-----vp-------------- 123 (238)
+.+|.|+|+|||||||+++.|++ +|+++++.|++.++....+......+.+....... +.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 35799999999999999999987 99999999999887655444433333332221111 10
Q ss_pred ----hHHHHHHHHHHHHccc-ccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 124 ----EDVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 124 ----d~~i~~ll~~~l~~~~-~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++...+...+.+.. ...+.++|+|+ |...+.. +. ...|.+|+|++|++++.+|+.+|.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~-~~l~e~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~ 145 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIENK--LT--ALCDRILVVDVSPQTQLARSAQRD 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTTTT--CG--GGCSEEEEEECCHHHHHHHHC---
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEe-chhhhcC--cH--hhCCEEEEEECCHHHHHHHHHHcC
Confidence 0111112222221100 01235788887 4332211 11 245899999999999999999884
No 40
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.44 E-value=9.1e-13 Score=107.80 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC--eechhhhHHhhcCCCChHHHHHHHHHHcCCC--CChHHHHHHH--HHH-
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALL--SKR- 134 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~s~~g~~i~~~l~~g~~--vpd~~i~~ll--~~~- 134 (238)
+++.|+|.|+|||||||+++.|+++++.. ++.+.+ +.++.+++++.++.. .++.....++ ..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 72 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW----------NSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET----------TCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC----------CcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999874 333211 122234444444332 1222211111 111
Q ss_pred ------HHcccccCCceEEEcCCcCCH--HH---------HHHHHhh-cCCCEEEEEecCHHHHHHHHh-cCC
Q 026464 135 ------LEEGYYRGESGFILDGIPRTR--IQ---------AEILDQI-VDVDLVINFKSIEDQLVKRNL-ESE 188 (238)
Q Consensus 135 ------l~~~~~~~~~g~IlDGfPrt~--~q---------a~~l~~~-~~~d~vI~L~~~~e~l~~Rl~-~R~ 188 (238)
+... ...+..+|+|+||.+. .| ...+... ..+|++|+|++|++++.+|+. .|.
T Consensus 73 ~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 73 DRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 1111 1134679999998763 22 2233222 358999999999999999999 775
No 41
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.43 E-value=5.2e-12 Score=100.33 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
++.|+|+|+|||||||+|+.|++++|+++++.++++++... ......+.. .|.....++...++. .+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g--~~~~~~~~~---~~~~~~~~~~~~~~~-~l~------ 69 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG--MTVADVVAA---EGWPGFRRRESEALQ-AVA------ 69 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC--SCHHHHHHH---HHHHHHHHHHHHHHH-HHC------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC--CCHHHHHHH---cCHHHHHHHHHHHHH-Hhh------
Confidence 35799999999999999999999999999999998876521 122111110 111111111112221 122
Q ss_pred CceEEEc-C--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHh--cC
Q 026464 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL--ES 187 (238)
Q Consensus 143 ~~g~IlD-G--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~--~R 187 (238)
..++|++ | .+........+.. ++.+|+|++|++++.+|+. .|
T Consensus 70 ~~~~vi~~g~~~~~~~~~~~~l~~---~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 70 TPNRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp CSSEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHHHHHHHHHHC
T ss_pred cCCeEEECCCcEEeCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhccC
Confidence 2345554 5 3334444444433 5799999999999999998 77
No 42
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.43 E-value=7.7e-13 Score=109.60 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcC-----CCCChHHH---------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVI--------- 127 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g-----~~vpd~~i--------- 127 (238)
+++.|+|+|++||||||+++.|++ +|+++++.|++.++...++......+.+.+... ..+....+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 467899999999999999999998 999999999999876655554445555443211 11221111
Q ss_pred ---------HHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 128 ---------FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 128 ---------~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+...+.........++++.+.|...... +. ..+|.+|+|++|++++.+|+..|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~ 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS--LY--KKANRVLVVDVSPETQLKRTMQRD 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT--GG--GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccC--cc--ccCCEEEEEECCHHHHHHHHHHcC
Confidence 1111111111000102344555556543332 21 247899999999999999998873
No 43
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.43 E-value=1.8e-12 Score=104.36 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~ 142 (238)
+..|+|+|+|||||||+++.|++++|+++++.++++++.... +..+.+.. .|.....+...+++.. +.. .
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~~~~~~~~---~g~~~~~~~~~~~~~~-~~~----~ 74 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--DIAWIFEM---EGEAGFRRREREMIEA-LCK----L 74 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--CHHHHHHH---HHHHHHHHHHHHHHHH-HHH----S
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--ChhhHHHH---hCHHHHHHHHHHHHHH-HHh----c
Confidence 567999999999999999999999999999999988764321 11111111 1111111222233333 222 1
Q ss_pred CceEEEcC--CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHH
Q 026464 143 ESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 143 ~~g~IlDG--fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
...+|..| .+......+.+... ..+|+|++|.+++.+|+
T Consensus 75 ~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 75 DNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQLKRI 115 (185)
T ss_dssp SSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHHHHHH
T ss_pred CCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHHHHHH
Confidence 23344444 45555555555543 38999999999999999
No 44
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.43 E-value=1.9e-13 Score=108.68 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHcccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
.+..|+|+|+|||||||+++.|++++|++++++++++++... ..+.+++. .|.....+...+++.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~l~~~~~---- 75 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG------LSVREIFEELGEDNFRMFEKNLIDELKT---- 75 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHTCHHHHHHHHHHHHHHHHT----
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC------CCHHHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 456899999999999999999999999999999999887532 12233332 2332222222333333221
Q ss_pred cCCceE-EEc---CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 141 RGESGF-ILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 141 ~~~~g~-IlD---GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+ |++ |++.. .. | ..++.+|+|++|++++.+|+.+|.
T Consensus 76 --~~~~~Vi~~g~g~~~~-~~---l---~~~~~vi~l~~~~e~~~~Rl~~r~ 118 (168)
T 1zuh_A 76 --LKTPHVISTGGGIVMH-EN---L---KGLGTTFYLKMDFETLIKRLNQKE 118 (168)
T ss_dssp --CSSCCEEECCGGGGGC-GG---G---TTSEEEEEEECCHHHHHHHHCC--
T ss_pred --cCCCEEEECCCCEech-hH---H---hcCCEEEEEECCHHHHHHHHhccC
Confidence 1233 443 34444 21 2 346899999999999999998873
No 45
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.41 E-value=4.4e-12 Score=100.38 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~ 143 (238)
..|+|+|+|||||||+++.|++++|+++++.+.+....... .... ...+.+.+|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~-~~~~-~~~~~l~~~------------------------ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGN-EKLF-EHFNKLADE------------------------ 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCH-HHHH-HHHHHHTTC------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHH-HHHH-HHHHHHHhC------------------------
Confidence 47899999999999999999999999999998876643200 0000 001112222
Q ss_pred ceEEEcCC---------------cCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 144 SGFILDGI---------------PRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 144 ~g~IlDGf---------------Prt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..+|.|-+ .....+...+... ..++.+|+|++|.+++.+|+.+|.
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 116 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG 116 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 23343411 1233444444433 468999999999999999998874
No 46
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.41 E-value=3.1e-13 Score=112.18 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC----CCChHH--HHHHHHHH-----------------cC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSALY--KQIANAVN-----------------EG 119 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~s~~g--~~i~~~l~-----------------~g 119 (238)
+.+|.|+|+|||||||+++.|++.+|+++++.|+++++... .+.++. ..+.+... .|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46799999999999999999999999999999999985421 111111 11112111 22
Q ss_pred CCCChHHHH-------------HHHHHHHHcc--cccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHH
Q 026464 120 KLVPEDVIF-------------ALLSKRLEEG--YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 120 ~~vpd~~i~-------------~ll~~~l~~~--~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
..+++.+.. +.+...+... ......++|+||+... ++ ....+|.+|+|+++.+++.+|+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~~----~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--TV----VFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--CC----CCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--ce----EecCCCEEEEEeCCHHHHHHHH
Confidence 222222110 1233333211 0123579999998322 11 1135799999999999999994
No 47
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.41 E-value=4.3e-13 Score=113.12 Aligned_cols=125 Identities=16% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechh---hhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHH--
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG---SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRL-- 135 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~---dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l-- 135 (238)
.+++.|+|.|++||||||+++.|++.++..+++++ .+.++ +.++++|+.+++++.+|.+.|.....-....+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~ 100 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE--PGGTRLGETLREILLNQPMDLETEALLMFAGRREH 100 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999854432222 12332 357899999999999886555433222222221
Q ss_pred -----HcccccCCceEEEcCCcCC------------HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 136 -----EEGYYRGESGFILDGIPRT------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 136 -----~~~~~~~~~g~IlDGfPrt------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
... ...+..+|.|.|..+ ..+...+..+ ..||++|+|++|++++.+|+.+|.
T Consensus 101 ~~~~i~p~-l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 101 LALVIEPA-LARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHTHHHH-HHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHH-HHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 111 012456888966432 2333333322 469999999999999999999885
No 48
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.39 E-value=3.4e-12 Score=102.32 Aligned_cols=114 Identities=12% Similarity=-0.015 Sum_probs=66.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCC----Ch--HHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV----PE--DVIFALLSKR 134 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v----pd--~~i~~ll~~~ 134 (238)
.+++.|+|+|+|||||||+++.|++++|.+++... +..|..+++++..|... +. +.+.+.+...
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~----------~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP----------EEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA 72 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCT----------HHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch----------hhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999988311 12333344333322111 11 2334455554
Q ss_pred HHcccccCCceEEEcCCcCCHHHHH----HHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 135 LEEGYYRGESGFILDGIPRTRIQAE----ILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 135 l~~~~~~~~~g~IlDGfPrt~~qa~----~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+.. .+..+|+|+........+ .+...+.+..+|+|++|++++.+|+..|.
T Consensus 73 l~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 73 SRE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp HHH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred HHh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence 543 135578887665543222 23322333456999999999999999885
No 49
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.39 E-value=1.5e-12 Score=111.46 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH---hCCCee--chhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL---LEVPHI--SMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~---~g~~~i--s~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~ 136 (238)
++..|+|+|+|||||||+|+.|++. +|++++ +.++ +++.+......++.. ........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~~~e~~----------~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKEKYEEF----------IKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCGGGHHH----------HHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhHHHHHH----------HHHHHHHHHHHHhh
Confidence 5678999999999999999999998 788887 7654 444433211111110 00111223333332
Q ss_pred cccccCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 137 EGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 137 ~~~~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
. ..+|+|+.+....+...+... ..++.+|+|++|.+++.+|+.+|.
T Consensus 72 -----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 72 -----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp -----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred -----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 2 679999988776666655433 457899999999999999999886
No 50
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.38 E-value=1.5e-12 Score=112.88 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=79.0
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC-----CCChH--------
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPED-------- 125 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~-----~vpd~-------- 125 (238)
.|.++.+|+|+|+|||||||+|+.|+ ++|+++|++|++.++...+++.....+.+.+.... .+...
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~ 149 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG 149 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence 34567899999999999999999999 69999999999988776665554444443322110 11111
Q ss_pred ----------HHHH----HHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 126 ----------VIFA----LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 126 ----------~i~~----ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
++.. .+...+......+...+|+||...... . +. ..+|.+|+|++|++++.+|+.+|.
T Consensus 150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~--~-~~--~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA--G-WQ--SMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT--T-GG--GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc--c-hH--HhCCEEEEEcCCHHHHHHHHHHcC
Confidence 1111 111222211111245799999642211 0 11 236899999999999999998873
No 51
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.38 E-value=1.8e-11 Score=102.08 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC--CCChHHH------------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVI------------ 127 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~--~vpd~~i------------ 127 (238)
+++.|+|.|++||||||+++.|++.++-..+++ ...++ +.++++|+.+++++.++. .+.+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~ 81 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTRE--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL 81 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEES--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccC--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999985333322 12232 357899999999999875 3443321
Q ss_pred HHHHHHHHHcccccCCceEEEcCCc----------C--CHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 128 FALLSKRLEEGYYRGESGFILDGIP----------R--TRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 128 ~~ll~~~l~~~~~~~~~g~IlDGfP----------r--t~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.+.+...+. .+..+|.|-|. + ...+...+..+ ..||++|+|++|++++.+|+.+|.
T Consensus 82 ~~~i~p~l~-----~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~ 153 (213)
T 4edh_A 82 AGVIRPALA-----RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARG 153 (213)
T ss_dssp HHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred HHHHHHHHH-----CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111222222 24567888542 1 23444444432 479999999999999999999885
No 52
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.38 E-value=7e-12 Score=102.72 Aligned_cols=119 Identities=12% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHH---HHHHHHHHcc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF---ALLSKRLEEG 138 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~---~ll~~~l~~~ 138 (238)
++..|+|+|+|||||||+++.|+..+|..+++.+++.+.. .. .....|....+.... ..+...+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~---------~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE---------NI-ATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHH---------HH-HHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHH---------HH-HHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 5678999999999999999999999999999987764321 00 112234333332211 1122211111
Q ss_pred cccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCCCC
Q 026464 139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (238)
Q Consensus 139 ~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (238)
. ..+..+|+|.......+.+.+.+......+|+|++|.+++.+|+.+|...+
T Consensus 98 ~-~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~ 149 (200)
T 4eun_A 98 A-DAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF 149 (200)
T ss_dssp H-HTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS
T ss_pred H-hcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC
Confidence 0 123567888655556666666665556789999999999999999887533
No 53
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.36 E-value=2.7e-13 Score=108.99 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|+|+|||||||+++.|++.+|++++++++++++.... ...+.. .....+..+.+...+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence 4567999999999999999999999999999999988864110 000000 001112334445555544443
Q ss_pred CCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 142 ~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
.++|+|+....... . ..++.+|+|++|.+++.+|+.+|+.
T Consensus 80 --g~~vv~~~~~~~~~-----~-~~~~~vi~L~~~~e~l~~R~~~r~~ 119 (180)
T 3iij_A 80 --GGVIVDYHGCDFFP-----E-RWFHIVFVLRTDTNVLYERLETRGY 119 (180)
T ss_dssp --CCEEEECSCCTTSC-----G-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred --CCEEEEechhhhcc-----h-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence 46788765432211 0 1268999999999999999999863
No 54
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.36 E-value=1e-11 Score=105.29 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=78.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcC---CCCChHHHH---------
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIF--------- 128 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g---~~vpd~~i~--------- 128 (238)
-++..|+|.|++||||||+++.|++.++..++++..++++ +.++++|+.+++++..+ ..+.+.+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999997666664345554 35789999999998642 234433221
Q ss_pred ---HHHHHHHHcccccCCceEEEcCC----------cCC--HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 129 ---ALLSKRLEEGYYRGESGFILDGI----------PRT--RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 129 ---~ll~~~l~~~~~~~~~g~IlDGf----------Prt--~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+.+...+.. +..+|.|-| ++. ..+...+..+ ..||++|+|++|++++.+|+.+|+
T Consensus 103 ~~~~~I~paL~~-----g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~ 176 (236)
T 3lv8_A 103 LVENVIKPALAR-----GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRG 176 (236)
T ss_dssp HHHHTHHHHHHT-----TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred HHHHHHHHHHHc-----CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 122223332 456788843 222 2333333332 479999999999999999999886
No 55
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.35 E-value=2.6e-11 Score=96.75 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHH---HHHHHHHHHHcc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV---IFALLSKRLEEG 138 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~---i~~ll~~~l~~~ 138 (238)
.+..|+|+|+|||||||+++.|++.+|.++++.+++.+.. .+.+ ...|..+.+.. ....+...+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFAM 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998764320 1111 11233333211 111122222111
Q ss_pred cccCCceEEEc-CCcCCHHHHHHHHhhcCCC-EEEEEecCHHHHHHHHhcCC
Q 026464 139 YYRGESGFILD-GIPRTRIQAEILDQIVDVD-LVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 139 ~~~~~~g~IlD-GfPrt~~qa~~l~~~~~~d-~vI~L~~~~e~l~~Rl~~R~ 188 (238)
. ..+..+|+| |++. ..+.+.+.+.. ++ .+|+|++|.+++.+|+..|.
T Consensus 77 ~-~~~~~~vi~~~~~~-~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 77 Q-RTNKVSLIVCSALK-KHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp H-HHCSEEEEECCCCS-HHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTST
T ss_pred H-hcCCcEEEEeCchH-HHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhcc
Confidence 0 113568888 5543 34445555433 35 79999999999999999886
No 56
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.35 E-value=5.3e-12 Score=107.90 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHccccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
+..|+|+|+|||||||+++.|++.+|+++++.+++++..... .. +.+++. .|.....+...+++.......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~~--- 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-TS----VAEIFEHFGESVFREKETEALKKLSLMY--- 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-SC----HHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-cc----HHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence 567999999999999999999999999999999998876521 12 222222 233323333333444333220
Q ss_pred CCceEEEc--CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 142 GESGFILD--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 142 ~~~g~IlD--GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
...+|.+ |.+........+.. +.+|+|++|.+++.+|+.++
T Consensus 120 -~~~Via~GgG~v~~~~~~~~l~~----~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 120 -HQVVVSTGGGAVIRPINWKYMHK----GISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp -SSEEEECCGGGGGSHHHHHHHTT----SEEEEEECCHHHHHHHHHC-
T ss_pred -CCcEEecCCCeecCHHHHHHHhC----CcEEEEECCHHHHHHHHhhc
Confidence 2344444 56777666666642 78999999999999999864
No 57
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.34 E-value=7.5e-11 Score=97.74 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=79.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh--CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHH----------
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL---------- 130 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~l---------- 130 (238)
+..|+|.|+.||||||+++.|++.+ |..++.+ ..+.+++.|+.+++++.++..++.....-+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~------~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------ESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe------eCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999998 4444432 224678999999999999887776543222
Q ss_pred --HHHHHHcccccCCceEEEcCCc----------CC--HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 131 --LSKRLEEGYYRGESGFILDGIP----------RT--RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 131 --l~~~l~~~~~~~~~g~IlDGfP----------rt--~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+...++ .+..+|.|.|. +. ..+...+... ..||++|+|++|+++..+|+.+|+.
T Consensus 76 ~~i~p~l~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 76 LKVIPALK-----EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp HTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHHHHHH-----cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 222222 23556777543 22 2333333332 4699999999999999999998864
No 58
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.34 E-value=3e-13 Score=108.39 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=68.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH-cCCCCChHHHHHHHHHHHHccccc
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~-~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
+.+|+|+|+|||||||+++.|++++|+++++.++++++.... .+.+.+. .|.....+....++. .+..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~------~~~~~~~~~g~~~~~~~~~~~~~-~l~~---- 72 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ------KVSEIFEQKRENFFREQEQKMAD-FFSS---- 72 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS------CHHHHHHHHCHHHHHHHHHHHHH-HHTT----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCC------CHHHHHHHcCHHHHHHHHHHHHH-HHHc----
Confidence 346999999999999999999999999999999988764221 1112221 232222222233332 2321
Q ss_pred CCceEEEc-CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 142 GESGFILD-GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 142 ~~~g~IlD-GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
...+|++ |.+.... .. |. ..+.+|+|++|.+++.+|+..|
T Consensus 73 -~~~~vi~~g~~~~~~-~~-l~---~~~~~i~l~~~~e~~~~R~~~r 113 (175)
T 1via_A 73 -CEKACIATGGGFVNV-SN-LE---KAGFCIYLKADFEYLKKRLDKD 113 (175)
T ss_dssp -CCSEEEECCTTGGGS-TT-GG---GGCEEEEEECCHHHHTTCCCGG
T ss_pred -cCCEEEECCCCEehh-hH-Hh---cCCEEEEEeCCHHHHHHHHhcc
Confidence 2456665 6543222 11 32 3468999999999999999776
No 59
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.33 E-value=3.4e-12 Score=104.93 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=88.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcCCC---Ch----HHHHHHHHHHcCCCCChH-------
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPED------- 125 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~---s~----~g~~i~~~l~~g~~vpd~------- 125 (238)
.++..|+|+|||||||||+++.|++.++- .+.++.+..|+..... .. ....+.+.+.+|..+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 46678999999999999999999999853 4455545444422100 00 013445555566543321
Q ss_pred -HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcC--CCEEEEEe-cCHHHHHHHHhcCCCCCCCccccccCC
Q 026464 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGG 201 (238)
Q Consensus 126 -~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~--~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~~~~~~ 201 (238)
.....+...+.. +..+|+|+.|....+. .+... -..+|+|+ +|.+++.+|+.+|..
T Consensus 90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~~l---~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~------------ 149 (204)
T 2qor_A 90 GTLKSEYDLAVGE-----GKICLFEMNINGVKQL---KESKHIQDGIYIFVKPPSIDILLGRLKNRNT------------ 149 (204)
T ss_dssp EEEHHHHHHHHHT-----TCEEEEECCHHHHHHH---HHCSSCSCCEEEEEECSCHHHHHHHHHTCTT------------
T ss_pred cCCHHHHHHHHHc-----CCeEEEEECHHHHHHH---HHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC------------
Confidence 011233344443 4789999877554433 33222 23789998 999999999998762
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHH
Q 026464 202 ARFSAADAASAWKEKFRIYAEQVRD 226 (238)
Q Consensus 202 ~~~~~dd~~e~v~~Rl~~y~~~~~~ 226 (238)
++++.+++|+..+.....+
T Consensus 150 ------~~~~~i~~rl~~~~~~~~~ 168 (204)
T 2qor_A 150 ------EKPEEINKRMQELTREMDE 168 (204)
T ss_dssp ------SCHHHHHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHHH
Confidence 2457888999888765543
No 60
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.32 E-value=2.5e-11 Score=101.27 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcC-----CCCChHHH---------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVI--------- 127 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g-----~~vpd~~i--------- 127 (238)
+++.|+|.|++||||||+++.|++.+.-..++...+.++ +.++++|+.+++++..+ ..+.+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 367899999999999999999999984433311122333 46789999999999832 23443321
Q ss_pred ---HHHHHHHHHcccccCCceEEEcCCcC------------CHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 128 ---FALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 128 ---~~ll~~~l~~~~~~~~~g~IlDGfPr------------t~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.+.+...++. +..+|.|-|.- ...+...+... ..||++|+|++|+++..+|+.+|+
T Consensus 80 ~~~~~~i~paL~~-----g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 80 QLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC-----CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1223333332 45678885421 23333334332 479999999999999999999885
No 61
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.30 E-value=4.3e-12 Score=103.79 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC-----CCCh-----------H--
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE-----------D-- 125 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~-----~vpd-----------~-- 125 (238)
++|+|+|++||||||+++.|++ +|++++++|+++++...........+.+...... .+.. +
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 9999999999998766554444444443332110 0110 0
Q ss_pred -----HHHHHH----HHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 126 -----VIFALL----SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 126 -----~i~~ll----~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+....+ ...+... .....+|+||.-..... +. ..+|.+|+|++|++++.+|+.+|+
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~--~~~~~~i~l~~~~e~~~~Rl~~R~ 145 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TY--KNYDKLIVVYAPYEVCKERAIKRG 145 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CG--GGSSEEEEECCCHHHHHHHHHHTC
T ss_pred HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---ch--hhCCEEEEEECCHHHHHHHHHHcC
Confidence 111111 1111111 11167889984221111 11 136899999999999999999884
No 62
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.29 E-value=1.3e-11 Score=107.42 Aligned_cols=144 Identities=14% Similarity=0.073 Sum_probs=87.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh--CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCC-------ChHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV-------PEDVIFALL 131 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~--g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v-------pd~~i~~ll 131 (238)
.++..|+|.|||||||||+++.|++++ ++.+||.| .++........ .+... +... ...+...++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D-~~R~~~~~~~~---~~~~~---~~~a~~~~~~~~~~~~~~~v 103 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND-TFKQQHPNFDE---LVKLY---EKDVVKHVTPYSNRMTEAII 103 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH-HHHTTSTTHHH---HHHHH---GGGCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech-HhHHhchhhHH---HHHHc---cchhhhhhhHHHHHHHHHHH
Confidence 467899999999999999999999999 78888874 45544332111 11111 1111 112223344
Q ss_pred HHHHHcccccCCceEEEcCCcCCHHHHHHHHh----hcCCCEEEEEecCHHHH----HHHHhcCCCCCC-CccccccCCC
Q 026464 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQL----VKRNLESEAFSP-HKEFLRLGGA 202 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~----~~~~d~vI~L~~~~e~l----~~Rl~~R~~~~~-~~~~~~~~~~ 202 (238)
...+.. +..+|+|+.+.+..|...+.+ .+....+++|.+|++.+ .+|+..|..... .++
T Consensus 104 ~~~l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R------- 171 (287)
T 1gvn_B 104 SRLSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTAR------- 171 (287)
T ss_dssp HHHHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCC-------
T ss_pred HHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCC-------
Confidence 444443 467999999988775544432 23344579999999999 888865532110 011
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 026464 203 RFSAADAASAWKEKFRIYAEQV 224 (238)
Q Consensus 203 ~~~~dd~~e~v~~Rl~~y~~~~ 224 (238)
..+.+..+.+.+|+....+.+
T Consensus 172 -~~~~e~~~~i~~rl~~a~~el 192 (287)
T 1gvn_B 172 -ATPKQAHDIVVKNLPTNLETL 192 (287)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHH
Confidence 012245667777776555443
No 63
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.28 E-value=5.3e-12 Score=107.48 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=71.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC--CeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh-------HHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-------DVIFALL 131 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~--~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd-------~~i~~ll 131 (238)
.++..|+|+|+|||||||+++.|++.++. .+++. |.+++...... .+.. ..|..+++ +++..++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~-D~~r~~~~~~~----~i~~--~~g~~~~~~~~~~~~~~~~~~~ 102 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYL----ELQQ--EYGKDSVEYTKDFAGKMVESLV 102 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG-GGGGTTSTTHH----HHHT--TCSSTTHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec-HHHHHhchhHH----HHHH--HcCchHHHHhhHHHHHHHHHHH
Confidence 46789999999999999999999999973 44454 55665432200 0000 01111111 1222233
Q ss_pred HHHHHcccccCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+. .+.++||||++++..|...+... +..-.++++.+|.+++.+|+.+|.
T Consensus 103 ~~~~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 103 TKLSS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHHH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 22222 23589999999987765554332 333346688999999999998774
No 64
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.28 E-value=2.7e-11 Score=110.47 Aligned_cols=101 Identities=15% Similarity=0.060 Sum_probs=76.9
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccc
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~ 139 (238)
+..+..|+|+|+|||||||+++.|++.+++.+|+.+++ + .. ......+...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~~----------------~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------SW----------------QRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------SH----------------HHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------HH----------------HHHHHHHHHHHhc--
Confidence 44678899999999999999999999999999999876 1 01 1122334444443
Q ss_pred ccCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 140 YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 140 ~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+..+|+|+.+.+..+...+.+. .....+|+|+++.+++.+|+..|..
T Consensus 309 ---g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp ---TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred ---CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 4679999998887776665432 3456799999999999999998864
No 65
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.25 E-value=1.8e-11 Score=99.46 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHH----cCCCCChHHHH------
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN----EGKLVPEDVIF------ 128 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~----~g~~vpd~~i~------ 128 (238)
.+.++.+|+|+|++||||||+++.|++. |+++++.+++.++.. .+.+ ..+.+..+ +|. +....+.
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~-i~~~~l~~~~~~~ 78 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGR-LDRRALARLVFSD 78 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTE-ECHHHHHHHHTTS
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCC-cCHHHHHHHHhCC
Confidence 3457789999999999999999999998 999999999987654 2211 22222211 121 2222111
Q ss_pred ------------HHH-HHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 129 ------------ALL-SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 129 ------------~ll-~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.++ ...+......+...+|+|| |..... .+. ..+|.+|+|++|++++.+|+..|.
T Consensus 79 ~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 79 PERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHHHHHHHHcC
Confidence 111 1222221112245678886 432111 011 236899999999999999999874
No 66
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.25 E-value=3.3e-11 Score=100.36 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCC-----CCh------------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE------------ 124 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~-----vpd------------ 124 (238)
.+-.|.|+|++||||||+++.|++ +|+++|++|.+.++.+.+++.....+.+.+..+.. +.-
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 456799999999999999999998 99999999999998888777666666655432211 221
Q ss_pred ------HHHHHHHHHHHHcccc-cCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 125 ------DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 125 ------~~i~~ll~~~l~~~~~-~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.++...+.+.+..... ....-+|+|. |.-.+... +.. .+|.+|+++||+++.++|+.+|.
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~~--~~D~vi~V~ap~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WKA--RCDRVLVVDCPVDTQIARVMQRN 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HHH--HCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-ccc--cCCeEEEEECCHHHHHHHHHhcC
Confidence 1222333333321100 1233466664 54333111 111 36899999999999999999984
No 67
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.23 E-value=3.7e-11 Score=101.99 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC----------eechhhhHHhhcCCCChHHHHHHHHHHcCCCC---ChH--
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGKLV---PED-- 125 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~----------~is~~dllr~~~~~~s~~g~~i~~~l~~g~~v---pd~-- 125 (238)
.++.+|.|.|+|||||||+|+.|++.+|++ ++++|++.+... . ..+.. ...|..+ |+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~----~--~~~~~-~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT----S--EQKAK-ALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC----H--HHHHH-HHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC----h--hhhhh-hccCCCCCCCcchhh
Confidence 367889999999999999999999999988 799999987421 1 11111 1234332 222
Q ss_pred --HHHHHHHHHHHcc-------------------cccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHH
Q 026464 126 --VIFALLSKRLEEG-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 126 --~i~~ll~~~l~~~-------------------~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
.+.+.+....... .......+|+||.+.... . .+.. .+|.+|+|++|++++++|+
T Consensus 93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~-~-~~~~--~~d~vi~l~~~~e~~~~R~ 168 (252)
T 1uj2_A 93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-Q-EVRD--LFQMKLFVDTDADTRLSRR 168 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-H-HHHH--HCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC-H-HHHH--hcCeeEEEeCCHHHHHHHH
Confidence 2233333322100 001346899999764311 1 1222 2579999999999999999
Q ss_pred hcCC
Q 026464 185 LESE 188 (238)
Q Consensus 185 ~~R~ 188 (238)
..|.
T Consensus 169 ~~R~ 172 (252)
T 1uj2_A 169 VLRD 172 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 68
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.21 E-value=3.2e-11 Score=95.78 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHccccc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~ 141 (238)
++..|+|+|+|||||||+++.|++.++.++++.++++++... ..++...+. .|.....+....++. .+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~-~l~~---- 72 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVIN-ELTE---- 72 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHH-HHHT----
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHH-HHHh----
Confidence 346799999999999999999999999999999888775421 122211110 111000001112222 2221
Q ss_pred CCceEEEc---CCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 142 GESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 142 ~~~g~IlD---GfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++++. |.+......+.+.. .+++++|+++.+++.+|+..|.
T Consensus 73 -~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 73 -KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp -SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC----
T ss_pred -CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCC
Confidence 2345553 45555444444443 3679999999999999998874
No 69
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.20 E-value=2.7e-10 Score=95.61 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=73.3
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhc----CCCChH--HHHHHHHH-----------------
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPRSAL--YKQIANAV----------------- 116 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~----~~~s~~--g~~i~~~l----------------- 116 (238)
+.++.+|.|+|++||||||+++.|++++|+++++.|++.+... ..+.+. ...+.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence 3577889999999999999999999999999999999998632 122210 01111111
Q ss_pred -HcCCCCC----hHHHHH-------------HHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHH
Q 026464 117 -NEGKLVP----EDVIFA-------------LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIED 178 (238)
Q Consensus 117 -~~g~~vp----d~~i~~-------------ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e 178 (238)
..|+.++ .+.+.. .+.+.+... ..+.++|+||+.... ..+ ...+++|+|++|++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~--~~~~~~v~~g~~~~~---~~l---~~~d~vi~L~a~~e 164 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI--AQQGGIVMDGRDIGT---VVL---PQAELKIFLVASVD 164 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHH--HTTSCEEEECSSCSS---SSG---GGCSEEEEEECCHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHh--cccCCEEEECCcchh---hhc---cCCCEEEEEECCHH
Confidence 2343221 212221 122222111 124689999986641 011 13589999999999
Q ss_pred HHHHHH
Q 026464 179 QLVKRN 184 (238)
Q Consensus 179 ~l~~Rl 184 (238)
++.+|+
T Consensus 165 ~~~~R~ 170 (236)
T 1q3t_A 165 ERAERR 170 (236)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 70
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.18 E-value=3.4e-10 Score=92.20 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC----CCCh--HHHHHHHHHH-----------------cCCC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSA--LYKQIANAVN-----------------EGKL 121 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~----~~s~--~g~~i~~~l~-----------------~g~~ 121 (238)
.|.|.|++||||||+++.|++.+|+++++.+++.+.... .+.+ ....+.+.+. .|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 799999999999999999999999999999999876421 1110 0011111111 2322
Q ss_pred CChH----H-------------HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHH
Q 026464 122 VPED----V-------------IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 122 vpd~----~-------------i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (238)
++.+ . +.+.+.+.+... . .++|+||.... . . -...+|++|+|++|++++.+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~vi~g~~~~-~---~--~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV---P-PPFVAEGRDMG-T---A--VFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS---C-SCEEEEESSCC-C---C--CCTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh---c-CCEEEEcccee-E---E--EecCCcEEEEEECCHHHHHHHH
Confidence 2211 1 111122222222 1 68999987433 0 0 0124689999999999999999
Q ss_pred hcCC
Q 026464 185 LESE 188 (238)
Q Consensus 185 ~~R~ 188 (238)
.+|.
T Consensus 154 ~~r~ 157 (208)
T 3ake_A 154 ARER 157 (208)
T ss_dssp HHTS
T ss_pred Hhhc
Confidence 8874
No 71
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.17 E-value=3.9e-10 Score=94.73 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=69.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHH-----------
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------- 128 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~----------- 128 (238)
.+++.|+|.|++||||||+++.|++.++. ..+++--+.+ .+.++++|+.+++++............
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr--eP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR--EPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE--SSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee--CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998865 4443321122 245789999999988753324443321
Q ss_pred -HHHHHHHHcccccCCceEEEcCCcC------------CHHHHHHHHhh---cCCCEEEEEecCHHHHHHHH
Q 026464 129 -ALLSKRLEEGYYRGESGFILDGIPR------------TRIQAEILDQI---VDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 129 -~ll~~~l~~~~~~~~~g~IlDGfPr------------t~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl 184 (238)
+++...+. .+..+|.|-|.- ...+...+... ..||++|+|++|+++..+|+
T Consensus 97 ~~~I~paL~-----~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri 163 (223)
T 3ld9_A 97 VKIIKPSLM-----QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS 163 (223)
T ss_dssp HHTHHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------
T ss_pred HHHHHHHHh-----cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh
Confidence 11222222 235677785532 23333444333 36999999999999999998
No 72
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.14 E-value=8.8e-11 Score=96.96 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~ 100 (238)
+..|+|+|+|||||||+++.|++.+|+++++.|++.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 46799999999999999999999999999999999885
No 73
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.12 E-value=1.5e-10 Score=95.08 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcC----CCCC-----------h--
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVP-----------E-- 124 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g----~~vp-----------d-- 124 (238)
....|.|+|++||||||+++.|++.+|+++|++|++.++.... ....+.+..... ..+. .
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence 4568999999999999999999999999999999998876543 111222221110 0011 1
Q ss_pred -----HHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHh
Q 026464 125 -----DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 125 -----~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
.++...+...+..........+|+|+ |...+. . +.. ..|.+|++++|+++..+|+.
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~-~-~~~--~~d~vi~v~a~~e~r~~Rli 148 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM-G-LDQ--LCDHVITVVASRETILKRNR 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT-T-GGG--GCSEEEEEECCHHHHHHHCS
T ss_pred HHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec-C-hHH--hCCEEEEEECCHHHHHHHHH
Confidence 11111222222111001134566764 543332 1 222 36899999999999999983
No 74
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.12 E-value=9.4e-10 Score=87.62 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHHhhcCCCC---hHHHHHHHHHHcCCCC-Ch---HHH---HHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRS---ALYKQIANAVNEGKLV-PE---DVI---FAL 130 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr~~~~~~s---~~g~~i~~~l~~g~~v-pd---~~i---~~l 130 (238)
+..|+|+|+|||||||+++.|+++++.++++ ++++... ..... ..|..+. ..+... .+ .+. ...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhcccc---CCCccccchhHHHHHHHHHHH
Confidence 4679999999999999999999999887664 6655442 22100 0000000 000000 00 111 111
Q ss_pred HHHHHHcccccCCceEEEcCCcC-CHHHHHHH-Hhhc-CCCEEEEEecCHHHHHHHHhcCCC
Q 026464 131 LSKRLEEGYYRGESGFILDGIPR-TRIQAEIL-DQIV-DVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGfPr-t~~qa~~l-~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
+...+. .+..+|+|+... ...+.+.+ .... .+..+|+|++|.+++.+|+.+|..
T Consensus 79 ~~~~~~-----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~ 135 (178)
T 1qhx_A 79 VVAMAR-----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGD 135 (178)
T ss_dssp HHHHHH-----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred HHHHHh-----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCC
Confidence 222222 235689998543 22211122 2222 234688899999999999988864
No 75
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.09 E-value=1.1e-10 Score=94.70 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
+.|+|.|+|||||||+++.|+++++.+++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 368999999999999999999999987764
No 76
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.08 E-value=7.7e-09 Score=84.96 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHH----------HH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------AL 130 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~----------~l 130 (238)
+.|+|.|+.||||||+++.|++.+ |..++.+. .+.+++.++.+++++.++..-|..... ..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr------eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR------EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE------SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999987 66665432 256788999999988877665543221 12
Q ss_pred HHHHHHcccccCCceEEEcCCcCC------------HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcC
Q 026464 131 LSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGfPrt------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
+...+. .+..+|.|-|..+ ......+... ..||++|+|++|+++..+|..++
T Consensus 75 I~~~L~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~ 142 (197)
T 3hjn_A 75 IKQYLS-----EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL 142 (197)
T ss_dssp HHHHHT-----TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---
T ss_pred HHHHHH-----CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc
Confidence 222222 2456777855321 2222333222 36999999999999999996544
No 77
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.07 E-value=1.4e-09 Score=89.57 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHH-HHHHHHHHcCC-CC------------ChHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGK-LV------------PEDVIF 128 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g-~~i~~~l~~g~-~v------------pd~~i~ 128 (238)
.++|.|.|++||||||+++.||+++|+++++ ++++++..... .+. ..+.+.-+... .. .++.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~-g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDG-RYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhc-CCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 4579999999999999999999999999999 89887643221 111 11111111100 00 011112
Q ss_pred HHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 129 ~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
....+.+.+.......++|++|--- . -.|.. ..-.++|+|++|.+++.+|+.++
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g--~--~vl~~-~~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCA--E--EILSD-NPNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTH--H--HHTTT-CTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCc--c--hhcCC-CCCeEEEEEECCHHHHHHHHHHH
Confidence 2223333222100135688887511 1 11111 11258999999999999999865
No 78
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.02 E-value=2.9e-09 Score=89.33 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=35.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~ 102 (238)
..++|.|.|++||||||+++.||+++|+++++ ++++++..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a 52 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLAS 52 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHH
Confidence 35789999999999999999999999999999 77777644
No 79
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.01 E-value=1.7e-09 Score=90.44 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCC-CCChHHH-----------HH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-LVPEDVI-----------FA 129 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~-~vpd~~i-----------~~ 129 (238)
+++.|+|.|++||||||+++.|++.++... .++++ ...++++|+.+++++.++. .+.+... .+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998732 33443 2357899999999998764 2333221 11
Q ss_pred HHHHHHHcccccCCceEEEcCCcCC--HHH---------HHHHHhh----cCCCEEEEE-ecCHHHHHHHHhc
Q 026464 130 LLSKRLEEGYYRGESGFILDGIPRT--RIQ---------AEILDQI----VDVDLVINF-KSIEDQLVKRNLE 186 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDGfPrt--~~q---------a~~l~~~----~~~d~vI~L-~~~~e~l~~Rl~~ 186 (238)
.+...++. +..+|.|-|.-+ ..| .+++.++ ..||++|+| ++|+++..+|+..
T Consensus 79 ~I~paL~~-----g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~ 146 (216)
T 3tmk_A 79 KIKKDLLE-----GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGF 146 (216)
T ss_dssp HHHHHHHT-----TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSS
T ss_pred HHHHHHHc-----CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhcc
Confidence 22223332 456777865322 111 2233322 369999999 9999999888653
No 80
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.00 E-value=2.5e-09 Score=86.12 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=63.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChH---HHHHH--
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFAL-- 130 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~---~i~~l-- 130 (238)
.++..|+|+|+|||||||+++.|++.++ +.+++. |.+++.+..... ..+.+ .+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-d~~~~~~~~~~~-------------~~~~~r~~~~~~~~~ 76 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG-DWARTTVSEGAG-------------FTREERLRHLKRIAW 76 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHTTTTTTCC-------------CCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH-HHHHHHHhhccC-------------CChhhHHHHHHHHHH
Confidence 4678899999999999999999999884 234554 444544332100 11111 11111
Q ss_pred HHHHHHcccccCCceEEEcCCcCCHHHHHHHHh----hcCCCEEEEEecCHHHHHHHHh
Q 026464 131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 131 l~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
+...+.. .+..+|+|++.......+.+.. ...++.+|+|++|.+++.+|+.
T Consensus 77 ~~~~~~~----~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 77 IARLLAR----NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHHHHT----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred HHHHHHh----CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence 1111111 2345667886544333333322 2357899999999999999974
No 81
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.00 E-value=1.7e-09 Score=101.39 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCe-----echhhhHHhhcCCCChHHHHHHHHHHc-CC---CCChHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRSALYKQIANAVNE-GK---LVPEDVIFALL 131 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~-----is~~dllr~~~~~~s~~g~~i~~~l~~-g~---~vpd~~i~~ll 131 (238)
..+..|+++|.|||||||+|+.|++.++..+ ++.|++.++........ .+... +. .+...++...+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999985544 67788655432221000 00000 00 00001111112
Q ss_pred ---HHHHHcccccCCceEEEcCCcCCHHHHHHHHhh----cCCCEEEEEecC-HHHHHHHHhcCCCCCCCccccccCCCC
Q 026464 132 ---SKRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGAR 203 (238)
Q Consensus 132 ---~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~----~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~~~ 203 (238)
...|.. ..+..+|+|+...+..+.+.+.+. +...++|.+.|+ ++.+.+|+..|..... .| . +
T Consensus 108 ~~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rP---dl--~--~ 177 (520)
T 2axn_A 108 RDVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSP---DY--K--D 177 (520)
T ss_dssp HHHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSG---GG--T--T
T ss_pred HHHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCC---cc--c--c
Confidence 222221 235789999999888777665332 222456667777 6777888866653210 00 0 0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH
Q 026464 204 FSAADAASAWKEKFRIYAEQVRDAT 228 (238)
Q Consensus 204 ~~~dd~~e~v~~Rl~~y~~~~~~l~ 228 (238)
...++..+.+.+|+..|....+++.
T Consensus 178 ~d~e~~~~~~~~Ri~~y~~~Yepi~ 202 (520)
T 2axn_A 178 CNSAEAMDDFMKRISCYEASYQPLD 202 (520)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHHHHHhhhhhhcccC
Confidence 0112233566788998887765543
No 82
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.00 E-value=6.5e-09 Score=88.28 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~ 100 (238)
.++.+|.|+||+||||||+++.|++++|+.+++.|.+.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 3567899999999999999999999999999999999854
No 83
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.98 E-value=2.9e-09 Score=85.25 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=62.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeechh-hhHHhhcCCCChHHHHHHHHHHcCCCCC---hHHHHHHH--
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFALL-- 131 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~-dllr~~~~~~s~~g~~i~~~l~~g~~vp---d~~i~~ll-- 131 (238)
.++..|+|+|++||||||+++.|++.+ |++++.++ +.+++.+.... | ..+ ++.+..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~ 69 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNL------------G-FSPEDREENVRRIAEV 69 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTC------------C-SSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcc------------c-cccccHHHHHHHHHHH
Confidence 357789999999999999999999998 98888653 44444322110 0 000 11111111
Q ss_pred HHHHHcccccCCceEEEcCCcCC----HHHHHHH-HhhcCCCEEEEEecCHHHHHHHHhcC
Q 026464 132 SKRLEEGYYRGESGFILDGIPRT----RIQAEIL-DQIVDVDLVINFKSIEDQLVKRNLES 187 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt----~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (238)
...+.. ...+++.|+... ..+...+ .....++.+|+|++|++++.+|+..|
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 70 AKLFAD-----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHHHH-----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHHHH-----CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 111211 122444444322 1222222 22345789999999999999998653
No 84
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.97 E-value=2.5e-09 Score=88.08 Aligned_cols=109 Identities=15% Similarity=0.063 Sum_probs=63.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC------CCeechhhhHHhhcCCCChHH-HHHHHHHHcCCCCChHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSK 133 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g------~~~is~~dllr~~~~~~s~~g-~~i~~~l~~g~~vpd~~i~~ll~~ 133 (238)
.++..|+|+|+|||||||+++.|++.++ +.+++. |.+++.+.....+. ..-...+ +.+..++..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~-d~~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~ 93 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNENI--------RRIAEVAKL 93 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC-hHHhhhhccccCCCHHHHHHHH--------HHHHHHHHH
Confidence 4678899999999999999999999886 667774 44454433210000 0000000 011122223
Q ss_pred HHHcccccCCceEEEcCCcCC-HHHHHHHHhh----------cCCCEEEEEecCHHHHHHHH
Q 026464 134 RLEEGYYRGESGFILDGIPRT-RIQAEILDQI----------VDVDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 134 ~l~~~~~~~~~g~IlDGfPrt-~~qa~~l~~~----------~~~d~vI~L~~~~e~l~~Rl 184 (238)
.+.. +..+|+| |+.. ....+.+.+. ..|+++|+|++|.+++.+|+
T Consensus 94 ~l~~-----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 94 FADS-----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHT-----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHC-----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 3332 3568888 5431 1223333321 24689999999999999994
No 85
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.95 E-value=2.4e-09 Score=87.68 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCCCChHHHHHHHHHHcCC---CC----ChHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGK---LV----PEDVIFALLS 132 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~---~v----pd~~i~~ll~ 132 (238)
.++.+|.|+|+|||||||+++.|++.+ ++.+++.+++++...... . ...+. .+ ....+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~l~~~i~ 89 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIE--T-------DKNGFLQYDVLEALNMEKMMSAIS 89 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSC--B-------CTTSCBCCSSGGGBCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhh--c-------cccCCChhHHHHHhHHHHHHHHHH
Confidence 356789999999999999999999998 899999998876421100 0 00000 01 1112222232
Q ss_pred HHHHccc----------ccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 133 KRLEEGY----------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 133 ~~l~~~~----------~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
..++... ......+|+||++.... +.+ ...+|.+|+++++.++..+|+..|.
T Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~~--~~~~d~~i~l~~~~~~~~~R~~~R~ 151 (207)
T 2qt1_A 90 CWMESARHSVVSTDQESAEEIPILIIEGFLLFNY--KPL--DTIWNRSYFLTIPYEECKRRRSTRV 151 (207)
T ss_dssp HHHHHHTTSSCCC-----CCCCEEEEECTTCTTC--GGG--TTTCSEEEEEECCHHHHHHHHHHSC
T ss_pred HHHhCCCCCCcCCCeeecCCCCEEEEeehHHcCc--HHH--HHhcCeeEEEECCHHHHHHHHHHcC
Confidence 2222100 01246799999754321 111 1357899999999999999998775
No 86
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.89 E-value=1.7e-10 Score=94.63 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChH-HHHHHHHHHc--CCCCChHHHHHHHH--------
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL-YKQIANAVNE--GKLVPEDVIFALLS-------- 132 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~-g~~i~~~l~~--g~~vpd~~i~~ll~-------- 132 (238)
+.|+|.|++||||||+++.|++.++...+++. ++++. ..+++. +..++..+.. |...++.....++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAFP-RYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEESS-EEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEeec-CCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 36899999999999999999999864333321 01100 000111 1222222211 11111222111111
Q ss_pred HHHHcccccCCceEEEcCCcCCH--HHH------------HHHHhh-------cCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 133 KRLEEGYYRGESGFILDGIPRTR--IQA------------EILDQI-------VDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 133 ~~l~~~~~~~~~g~IlDGfPrt~--~qa------------~~l~~~-------~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
..+.... ..+..+|+|+++.+. .|. +.+... ..+|.+|+|++|++++.+|+.+|..
T Consensus 79 ~~i~~~l-~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 79 HTIQGLC-RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155 (214)
T ss_dssp HHHHHEE-EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHh-hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence 1122111 124678999998653 232 222221 1589999999999999999998863
No 87
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.86 E-value=4.2e-09 Score=85.58 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCC---CC----hHHHHHHHHHHcCCCCCh--------HH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP---RS----ALYKQIANAVNEGKLVPE--------DV 126 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~---~s----~~g~~i~~~l~~g~~vpd--------~~ 126 (238)
.+..++|+||+||||||+++.|+..+.-.+++..++.+..... +- ............+..+.. ..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 4668999999999999999999988753333332222211100 00 000122222222211100 00
Q ss_pred HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCCC
Q 026464 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (238)
Q Consensus 127 i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (238)
....+...+.. +..+|+|+.+....+... ....+..++++..+.+++.+|+.+|..
T Consensus 86 ~~~~i~~~l~~-----g~~vi~d~~~~~~~~~~~--~~~~~~~v~~~~~~~e~l~~Rl~~R~~ 141 (205)
T 3tr0_A 86 EKDWVLRQLKA-----GRDVLLEIDWQGARQIRE--LFPPALSIFILPPSIEALRERLIKRRQ 141 (205)
T ss_dssp EHHHHHHHHHT-----TCEEEEECCHHHHHHHHH--HCTTCEEEEEECSCHHHHHHHHHTCTT
T ss_pred hHHHHHHHHHc-----CCeEEEEECHHHHHHHHH--hCCCcEEEEEECcCHHHHHHHHHHhCC
Confidence 01223333443 356889987665554432 223444455555579999999999864
No 88
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.85 E-value=7.9e-09 Score=87.93 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHh-hcCCC--ChHHHHHHH---H-H-----HcCCCCChHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ-ELSPR--SALYKQIAN---A-V-----NEGKLVPEDVIFALL 131 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~-~~~~~--s~~g~~i~~---~-l-----~~g~~vpd~~i~~ll 131 (238)
..|+|+|||||||||+|+.||++++.+++++|++... .+.-. .+....... . + .+| .+......+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence 4789999999999999999999999999999887522 11100 000000000 0 0 000 12223333344
Q ss_pred HHHHHcccccCCceEEEcCCcCCHHHHHHH-Hhh---cCC-CEEEEEecCH-HHHHHHHhcCC
Q 026464 132 SKRLEEGYYRGESGFILDGIPRTRIQAEIL-DQI---VDV-DLVINFKSIE-DQLVKRNLESE 188 (238)
Q Consensus 132 ~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l-~~~---~~~-d~vI~L~~~~-e~l~~Rl~~R~ 188 (238)
...+ +.. ..+..+|++|-.. ...+.+ ... ... -.+|+|++|. +++.+|+.+|.
T Consensus 81 ~~~i-~~~-~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 81 IFEV-DWR-KSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHH-HTT-TTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHH-HHH-hCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 4444 221 2345677775332 222222 220 112 2689999997 99999999875
No 89
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.85 E-value=1.3e-08 Score=83.00 Aligned_cols=134 Identities=12% Similarity=0.084 Sum_probs=84.7
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcCC---CCh----HHHHHHHHHHcCCCCChH--------HHHH
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED--------VIFA 129 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~s~----~g~~i~~~l~~g~~vpd~--------~i~~ 129 (238)
|+|+||+||||+|+++.|.+++.- ..+++...-|.--.. +.+ --+.+.+.+.+|..+.-. +...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~ 83 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA 83 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence 889999999999999999988742 334443333321110 100 124667777777754321 1233
Q ss_pred HHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhc--CCCEEEEEecCHHHHHHHHhcCCCCCCCccccccCCCCCCCC
Q 026464 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAA 207 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~d 207 (238)
-+...+.+ +..+|+|.-+....| +.+.. .+..++++..+.++|.+||.+|+.
T Consensus 84 ~v~~~l~~-----g~~vil~id~~g~~~---~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~------------------ 137 (186)
T 1ex7_A 84 SVKQVSKS-----GKTCILDIDMQGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGRGT------------------ 137 (186)
T ss_dssp HHHHHHHH-----TSEEEEECCHHHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHHCC------------------
T ss_pred eeeehhhC-----CCEEEecCCHHHHHH---HHHhcccCceEEEEeCCCHHHHHHHHHhcCC------------------
Confidence 34455554 367899876544444 43332 344556666678999999999873
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 026464 208 DAASAWKEKFRIYAEQVR 225 (238)
Q Consensus 208 d~~e~v~~Rl~~y~~~~~ 225 (238)
++++.+++||.....+..
T Consensus 138 e~~e~i~~Rl~~a~~e~~ 155 (186)
T 1ex7_A 138 ETEESINKRLSAAQAELA 155 (186)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 467899999998887654
No 90
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.83 E-value=3e-08 Score=80.89 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=63.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHH----H--
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----A-- 129 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g~~--~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~----~-- 129 (238)
.++..|+|+|++||||||+++.|+..+ |.. +++.+++. ..+... ....++... .
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~-~~~~~~--------------~~~~~~~~~~~~~~~~ 87 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR-HGLNRD--------------LSFKAEDRAENIRRVG 87 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-TTTTTT--------------CCSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh-hHhhcc--------------cCcChHHHHHHHHHHH
Confidence 367889999999999999999999998 665 77766543 222211 111111111 0
Q ss_pred HHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcC--CCEEEEEecCHHHHHHHH
Q 026464 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN 184 (238)
Q Consensus 130 ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl 184 (238)
.+...+.. ....+|.++.-......+.+.+... ...+|+|++|.+++.+|+
T Consensus 88 ~~~~~~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 88 EVAKLFAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHHHHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHHHHHHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 11112221 2345666554333444455544432 345799999999999997
No 91
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.83 E-value=2.7e-08 Score=83.94 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~ 101 (238)
.+++.|+|.|||||||||+++.|++++|+++++.|++.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 35678999999999999999999999999999999997763
No 92
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=2e-09 Score=88.73 Aligned_cols=137 Identities=16% Similarity=0.200 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcCC---CCh----HHHHHHHHHHcCCCCChH--------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED-------- 125 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~s~----~g~~i~~~l~~g~~vpd~-------- 125 (238)
++..|+|+||+||||||+++.|++.++- ...++....+..... +.. -...+.+.+.++..+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 5678999999999999999999998853 333332222211100 000 012334444444332110
Q ss_pred HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecC-HHHHHHHHhcCCCCCCCccccccCCCCC
Q 026464 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARF 204 (238)
Q Consensus 126 ~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~~~~ 204 (238)
+....+...+.. +..+|+|+.+....+ +.+......+|++..| .+++.+|+.+|+.
T Consensus 87 ~~~~~i~~~l~~-----g~~vild~~~~g~~~---~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~--------------- 143 (208)
T 3tau_A 87 TPLEYVEEKLAA-----GVDIFLEIEVQGAMQ---VRKAMPEGIFIFLTPPDLSELKNRIIGRGT--------------- 143 (208)
T ss_dssp EEHHHHHHHHHT-----TCCEEEECCHHHHHH---HHHHCTTSEEEEEECTTTTTSSCC---------------------
T ss_pred CcHHHHHHHHHc-----CCeEEEEeeHHHHHH---HHHhCCCeEEEEEeCCCHHHHHHHHHhcCC---------------
Confidence 011223444443 467899986554443 3332222245555554 8999999988863
Q ss_pred CCCCcHHHHHHHHHHHHHHH
Q 026464 205 SAADAASAWKEKFRIYAEQV 224 (238)
Q Consensus 205 ~~dd~~e~v~~Rl~~y~~~~ 224 (238)
++++.+++|+.......
T Consensus 144 ---~~~e~i~~Rl~~~~~e~ 160 (208)
T 3tau_A 144 ---ESMEVVEERMETAKKEI 160 (208)
T ss_dssp ----CCHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHH
Confidence 23467777777766543
No 93
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.81 E-value=3.6e-09 Score=86.03 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCeechhhhHHhhcCC---CC----hHHHHHHHHHHcCCCCChHH-------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSP---RS----ALYKQIANAVNEGKLVPEDV------- 126 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is~~dllr~~~~~---~s----~~g~~i~~~l~~g~~vpd~~------- 126 (238)
++..|+|+||+||||||+++.|+..+ .-..+.++...+..... +. .-...+...+.+|..+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 46789999999999999999999877 22222333322221100 00 00123344445544332111
Q ss_pred -HHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEE-EEEe-cCHHHHHHHHhcCCC
Q 026464 127 -IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLV-INFK-SIEDQLVKRNLESEA 189 (238)
Q Consensus 127 -i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~v-I~L~-~~~e~l~~Rl~~R~~ 189 (238)
..+.+...+.. +..+|+|+.+....+.. ... ++.+ |++. ++.+++.+|+.+|..
T Consensus 85 ~~~~~i~~~l~~-----g~~vv~d~~~~~~~~~~---~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~ 141 (207)
T 2j41_A 85 TPVQYVKDTMDE-----GHDVFLEIEVEGAKQVR---KKF-PDALFIFLAPPSLEHLRERLVGRGT 141 (207)
T ss_dssp EEHHHHHHHHHT-----TCEEEEECCGGGHHHHH---HHC-TTSEEEEEECCC-------------
T ss_pred CCHHHHHHHHHc-----CCeEEEEECHHHHHHHH---Hhc-CCeEEEEEECCCHHHHHHHHHhcCC
Confidence 11223333432 46799998766544332 222 3433 3333 567899999988863
No 94
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.81 E-value=3.1e-08 Score=94.54 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=65.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeechh-hhHHhhcCCCChHH-HHHHHHHHcCCCCChHHHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSKRL 135 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~---g~~~is~~-dllr~~~~~~s~~g-~~i~~~l~~g~~vpd~~i~~ll~~~l 135 (238)
.++..|+|+|+|||||||+++.|++.+ |++++.++ |.+|..+....... ..-.+.+ +.+.+++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHH
Confidence 367899999999999999999999999 99888774 66665443211000 0000000 01122222222
Q ss_pred HcccccCCceEEEcC-CcCC--HHHHHHH-HhhcCCCEEEEEecCHHHHHHHHh
Q 026464 136 EEGYYRGESGFILDG-IPRT--RIQAEIL-DQIVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 136 ~~~~~~~~~g~IlDG-fPrt--~~qa~~l-~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
.. +..+|.|+ .|.. ..+...+ .....++++|+|++|.+++.+|+.
T Consensus 122 ~~-----G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 122 DA-----GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp HT-----TCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred hC-----CCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 21 23344442 2221 2222222 222346889999999999999976
No 95
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.79 E-value=4.9e-09 Score=89.28 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh-CCCeec
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHIS 93 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~-g~~~is 93 (238)
.+++.|+|.|++||||||+++.|++.+ +..++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 467899999999999999999999998 665553
No 96
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.66 E-value=3.6e-08 Score=85.66 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dllr 99 (238)
++.+|.|.|++||||||+|+.|++.+| +++|++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 566899999999999999999999887 78999999876
No 97
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.63 E-value=1.4e-07 Score=75.88 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcCCCChHHHHHHHHHHcCCCCCh-------HHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-------DVIFALLSKR 134 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd-------~~i~~ll~~~ 134 (238)
+..++|+||+||||||+++.|++.++. .+++.+++.+. ... ..+++ ..+.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~l~~~ 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVG---------------GYRPPWESDELLALTWKNITDL 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCT---------------TCCCGGGCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hcc---------------ccccCccchhHHHHHHHHHHHH
Confidence 357899999999999999999988765 67777665432 111 01111 1122222211
Q ss_pred HHcccccCCceEEEcCCcCCHHHHHHHHhh----c-C-CCEEEEEecCHHHHHHHHhcCCCC
Q 026464 135 LEEGYYRGESGFILDGIPRTRIQAEILDQI----V-D-VDLVINFKSIEDQLVKRNLESEAF 190 (238)
Q Consensus 135 l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~----~-~-~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (238)
..... .....+|+|++- .....+.+.+. + . ...+++|.++.+++.+|+..|..+
T Consensus 66 ~~~~~-~~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d 125 (189)
T 2bdt_A 66 TVNFL-LAQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD 125 (189)
T ss_dssp HHHHH-HTTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred HHHHH-hcCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence 11100 123468999852 22222222221 1 1 234688999999999999988643
No 98
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.61 E-value=2.6e-07 Score=74.05 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=66.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC--eechhhhHHhhcCCCChHHHHHHHHHHcCCCCC-----hHHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVP-----EDVIFALLSKR 134 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~--~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vp-----d~~i~~ll~~~ 134 (238)
++..++|+|+|||||||+++.|+..++.. +++.+++.... ..... -..++ ...+.+.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~-----------~~~~~~~~~~~~~v~~~l~~~ 75 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRI-----------DPWLPQSHQQNRMIMQIAADV 75 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCC-----------CTTSSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccc-----------cCCccchhhhhHHHHHHHHHH
Confidence 56789999999999999999999887655 66766654421 11000 00111 11222222211
Q ss_pred HHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 135 LEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 135 l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
.... ...+..+++|++.... +.+.+......-.++++.++.++++.|+..|.
T Consensus 76 ~~~~-~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 76 AGRY-AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHHH-HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred HHHH-hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC
Confidence 1110 0123457889876532 22223322223358999999999999999875
No 99
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.59 E-value=1.7e-07 Score=88.29 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC-----CeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~-----~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~ 136 (238)
.+..|+|+|+|||||||+++.|++.++. .+++. |.+++.+.........-+... -+.+..++...+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l~ 442 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIVK 442 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-------HHHHHHHHHHHHh
Confidence 4678999999999999999999998863 56665 456655432211100000000 0011122222222
Q ss_pred cccccCCceEEEcCCcCCHHHHHHHHhhc-CCC-EEEEEecCHHHHHHHHh
Q 026464 137 EGYYRGESGFILDGIPRTRIQAEILDQIV-DVD-LVINFKSIEDQLVKRNL 185 (238)
Q Consensus 137 ~~~~~~~~g~IlDGfPrt~~qa~~l~~~~-~~d-~vI~L~~~~e~l~~Rl~ 185 (238)
.+.++|+|+..-.......+.+.. ..+ .+|+|++|.+++.+|+.
T Consensus 443 -----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 443 -----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred -----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence 246899997443333323333332 356 89999999999999985
No 100
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.54 E-value=2.8e-07 Score=85.02 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCe-----echhhhHHhhcCCCC------hHHHHHHHHHHcCCCCChHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRS------ALYKQIANAVNEGKLVPEDVIFA 129 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~-----is~~dllr~~~~~~s------~~g~~i~~~l~~g~~vpd~~i~~ 129 (238)
.++.+|+|+|.|||||||+++.|++.++... ++.+++.++...... ..|+..... -...+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~-------re~~~~~ 109 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKI-------RKQCALA 109 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHH-------HHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHH-------HHHHHHH
Confidence 4678999999999999999999999986444 444443333111100 001000000 0011112
Q ss_pred HH---HHHHHcccccCCceEEEcCCcCCHHHHHHHHhhc--CCCEEEEEe---cCHHHHHHHHhcCCCCCCCccccccCC
Q 026464 130 LL---SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFK---SIEDQLVKRNLESEAFSPHKEFLRLGG 201 (238)
Q Consensus 130 ll---~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~--~~d~vI~L~---~~~e~l~~Rl~~R~~~~~~~~~~~~~~ 201 (238)
.+ ...+.. ..+.++|+|+...+..+.+.+.+.. ....+++|+ .+++.+.+|+..+..... .| .
T Consensus 110 ~l~~~~~~l~~---~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp---~~--~- 180 (469)
T 1bif_A 110 ALNDVRKFLSE---EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSP---DY--V- 180 (469)
T ss_dssp HHHHHHHHHHT---TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTST---TT--T-
T ss_pred HHHHHHHHHHh---CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCC---cc--c-
Confidence 22 233322 2356799999888876666653221 112356666 457888888765432110 00 0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 026464 202 ARFSAADAASAWKEKFRIYAEQVRDAT 228 (238)
Q Consensus 202 ~~~~~dd~~e~v~~Rl~~y~~~~~~l~ 228 (238)
....++..+.+.+|+..|....+++.
T Consensus 181 -~~~~e~~~~~~~~R~~~y~~~ye~l~ 206 (469)
T 1bif_A 181 -NRDSDEATEDFMRRIECYENSYESLD 206 (469)
T ss_dssp -TSCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred -CCCHHHHHHHHHHHHHHhccEeEECC
Confidence 00011223566777887776655543
No 101
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=5.9e-08 Score=78.28 Aligned_cols=134 Identities=11% Similarity=0.044 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcC---CCC----hHHHHHHHHHHcCCCCChH--------HH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELS---PRS----ALYKQIANAVNEGKLVPED--------VI 127 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~---~~s----~~g~~i~~~l~~g~~vpd~--------~i 127 (238)
..++|+||+||||||+++.|+..+.- ..+++...-+..-. .+. .....+...+.++..+... +-
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 45889999999999999999987631 11111110110000 000 0012333334443332100 00
Q ss_pred HHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHh-hcCCCEEEEEecCH-HHHHHHHhcCCCCCCCccccccCCCCCC
Q 026464 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIE-DQLVKRNLESEAFSPHKEFLRLGGARFS 205 (238)
Q Consensus 128 ~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~-~~~~d~vI~L~~~~-e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (238)
.+.+...+.. +..+|+|.. ...+..+.. ...-..+|++..|. +++.+|+.+|+.
T Consensus 82 ~~~i~~~l~~-----g~~~il~~~---~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~---------------- 137 (186)
T 3a00_A 82 VASVKQVSKS-----GKTCILDID---MQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT---------------- 137 (186)
T ss_dssp HHHHHHHHHT-----TCEEEEECC---HHHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred HHHHHHHHHc-----CCeEEEEEc---HHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCC----------------
Confidence 1223334443 356788743 344444554 33334578888866 999999998873
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 026464 206 AADAASAWKEKFRIYAEQ 223 (238)
Q Consensus 206 ~dd~~e~v~~Rl~~y~~~ 223 (238)
++++.+++||.....+
T Consensus 138 --~~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 138 --ETEESINKRLSAAQAE 153 (186)
T ss_dssp ------------------
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 2345667777666544
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.52 E-value=1.6e-07 Score=76.66 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eechhhhHHhh---cCCCChHHHHHHHHHHcCCCCChHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQE---LSPRSALYKQIANAVNEGKLVPEDVIFALL 131 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~---g~~--~is~~dllr~~---~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll 131 (238)
+.++..|.|+|++||||||+++.|+..+ +.. +++.+.+.+.. ...+...+..+ . .| .+.-+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~---~-~~-~~d~~~l~~~v 93 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEY---Y-YL-QWDVEWLTHQL 93 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHH---H-HT-SSCHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCC---C-cc-ccCHHHHHHHH
Confidence 3577899999999999999999999876 443 33445443221 11222222211 1 11 11212222222
Q ss_pred HHHHHc--------------------ccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 132 SKRLEE--------------------GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 132 ~~~l~~--------------------~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
...+.. ........+|+||......+ +. ..+|.+|++++|.++.++|+..|.
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~--~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR--PFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG--GGCSEEEEECCC------------
T ss_pred HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH--hhcCEEEEEeCCHHHHHHHHhcCC
Confidence 111110 00112456889986432111 11 236899999999999999998874
No 103
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.50 E-value=2.6e-07 Score=77.11 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.++..|.|.|+.||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999976
No 104
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.45 E-value=9e-07 Score=72.97 Aligned_cols=110 Identities=8% Similarity=0.128 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC---CCeechhhhHHhhcC-C-C---Ch-----------------HHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELS-P-R---SA-----------------LYKQIANAV 116 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g---~~~is~~dllr~~~~-~-~---s~-----------------~g~~i~~~l 116 (238)
.+++|+|.|.|||||+|+++.|.+.+| ++.++++|.++++.. . + .. +|+++++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~-- 87 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ-- 87 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHH--
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh--
Confidence 567999999999999999999998885 778999999995321 1 0 11 1111111
Q ss_pred HcCCCCChHHHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcC-CCEEEEEecCHHHHHHHHh
Q 026464 117 NEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 117 ~~g~~vpd~~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~ 185 (238)
.|. ..+..++. .. .....|||||. |....++.|.+... --.+|.+.+++++..+|..
T Consensus 88 -~d~----~~~~~~~~---~~---~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~ 145 (202)
T 3ch4_B 88 -ADP----GFFCRKIV---EG---ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGW 145 (202)
T ss_dssp -HCT----TTTHHHHS---BT---CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTC
T ss_pred -cCc----hHHHHHHH---Hh---cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhh
Confidence 111 11112221 11 12357999998 88888888877533 2458999999999999953
No 105
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=5.1e-07 Score=75.62 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
+++.|+|.|++||||||+++.|++.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999999993
No 106
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.43 E-value=1.6e-06 Score=76.81 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
.+++.|+|.|+-||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35789999999999999999999999864
No 107
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.38 E-value=2.7e-06 Score=80.45 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhC----CC--eechhhhHHhhcCCCChHHH-HHHHHHHcCCCCChHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE----VP--HISMGSLVRQELSPRSALYK-QIANAVNEGKLVPEDVIFALLS 132 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g----~~--~is~~dllr~~~~~~s~~g~-~i~~~l~~g~~vpd~~i~~ll~ 132 (238)
..++..|+|+|+|||||||+|+.|+++++ .+ +++ +|.++..+........ .-.+.+ +.+..++.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD-~D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~ 463 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL-GDTVRHELSSELGFTREDRHTNI--------QRIAFVAT 463 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE-HHHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC-cHHHHHHhccccCCChhHHHHHH--------HHHHHHHH
Confidence 34678899999999999999999999986 43 444 3556654332110000 000000 01112333
Q ss_pred HHHHcccccCCceEEEcCCcC---CHHHHHHHHhhcCCCEEEEEecCHHHHHHHHh
Q 026464 133 KRLEEGYYRGESGFILDGIPR---TRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (238)
Q Consensus 133 ~~l~~~~~~~~~g~IlDGfPr---t~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (238)
..+.. +..+|.|..-. ...++..+......+.+|+|++|.+++.+|..
T Consensus 464 ~~~~~-----g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 464 ELTRA-----GAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHHT-----TCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred HHHhC-----CCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence 22222 34456663221 12222222221124589999999999999963
No 108
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.35 E-value=7.7e-07 Score=78.88 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
++..|+|+||+||||||++..||++++..+||+|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456899999999999999999999999999998876
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.33 E-value=1.3e-06 Score=71.25 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC--CCeechhhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g--~~~is~~dllr 99 (238)
++.+|.|+||+||||||+++.|+..++ +.+++.+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 567899999999999999999999998 88888877654
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.33 E-value=7.5e-07 Score=72.97 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhh
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL 97 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dl 97 (238)
..++.+|.|+||+||||||+++.|+..+. ..+|+.++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 35788999999999999999999999875 556666543
No 111
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.28 E-value=3.2e-06 Score=73.71 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeechhhhH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-------~~~is~~dll 98 (238)
.++.+|.|+|++||||||+++.|+..++ +.++++++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4678999999999999999999999876 5566666643
No 112
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.25 E-value=1.8e-06 Score=71.67 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=17.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHH-HHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLS-KLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La-~~~g 88 (238)
++..++|+||+||||||+++.|+ ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 56789999999999999999999 7663
No 113
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.21 E-value=9e-06 Score=68.20 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
.++.+|.|+||.||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 467889999999999999999999988865
No 114
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.20 E-value=5.6e-07 Score=79.35 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeechhhhH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g-------~~~is~~dll 98 (238)
..++..|.|+||+||||||+++.|+..++ +..+++++..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 35788999999999999999999998875 3457776654
No 115
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.11 E-value=4.9e-05 Score=67.40 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCCchHHH-HHHHHHhCCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYA-DNLSKLLEVP 90 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a-~~La~~~g~~ 90 (238)
.+++.|+|-|+-||||||++ +.|++.++-.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 35688999999999999999 9999988643
No 116
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.09 E-value=7.2e-05 Score=67.10 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+++.|+|.|+-||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678899999999999999999999875
No 117
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.09 E-value=6.6e-05 Score=66.30 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
+++.|+|.|+-||||||+++.|++.++
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999998875
No 118
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.09 E-value=1.4e-06 Score=76.78 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dll 98 (238)
++..|+|+||+||||||++..||++++..+|++|++.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 4568999999999999999999999999999998763
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.89 E-value=4.8e-05 Score=63.15 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
++..++|+||+||||||+.+.|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 567899999999999999999998764
No 120
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.89 E-value=4.7e-06 Score=73.91 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
+..|+|.||+||||||+|..|++.++..+||+|++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 35799999999999999999999999999999886
No 121
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.88 E-value=6.7e-06 Score=69.56 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~ 103 (238)
++|.|+|++||||||+++.|.+.+|++++++++.+++++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5799999999999999999999999999999988877543
No 122
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.88 E-value=2.5e-05 Score=73.59 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC------CCeechhhhH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLV 98 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g------~~~is~~dll 98 (238)
++..|+|+|++||||||+++.|+..++ +.+++.+++.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 678899999999999999999999984 3346665543
No 123
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.81 E-value=1e-05 Score=70.94 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
.+..|+|+||+||||||++..|+++++..+||.|.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 567899999999999999999999999988888653
No 124
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.79 E-value=1.5e-05 Score=68.94 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR 99 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr 99 (238)
..|..++|.||||+|||++|+.+|+.+|.+++. .+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES 74 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence 356678889999999999999999999887664 445543
No 125
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.76 E-value=1.2e-05 Score=70.67 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
+..|+|.||+||||||++..|+++++..+||.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45789999999999999999999999999988765
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.73 E-value=2.9e-05 Score=66.66 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|.||||+|||++++.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999987
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.72 E-value=0.00069 Score=53.48 Aligned_cols=107 Identities=19% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHH----HHHHHHHHHc
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI----FALLSKRLEE 137 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i----~~ll~~~l~~ 137 (238)
++-.++|+||+||||||+++.+. .+...++.+ .++..+.... |........ .......+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d-~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD-FCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH-HHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH-HHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHhC
Confidence 67789999999999999999854 244455543 3333322110 111111111 1112222222
Q ss_pred ccccCCceEEEcCCcCCH---HHHHHHHh-hcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 138 GYYRGESGFILDGIPRTR---IQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 138 ~~~~~~~g~IlDGfPrt~---~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+...++|...... .|.-.+.. ....-.+++||-|...+-.|...|.
T Consensus 73 -----g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 73 -----GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -----TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -----CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 3456777654432 22222222 2222358999999999999888775
No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=2.8e-05 Score=62.07 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
|.++..++|+||+||||||+++.|+..+.
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34667899999999999999999998764
No 129
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.63 E-value=1.8e-05 Score=70.54 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
....|+|+|+|||||||+++.|++.+++++
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 445799999999999999999999999887
No 130
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=5.1e-05 Score=63.65 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.-++|+||||+||||+++.|+..++.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3489999999999999999999998776644
No 131
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.56 E-value=4.9e-05 Score=63.47 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+||||+++.+++.++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 345588999999999999999999999877643
No 132
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=3.9e-05 Score=70.18 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~ 100 (238)
.+.-|+|.||||+|||++|+.+|.++|.+++++ .+++..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 356799999999999999999999999887654 445443
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.53 E-value=6.3e-05 Score=59.66 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeechhhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~----g--~~~is~~dllr 99 (238)
.+..++|+||||+||||+++.++..+ | +.+++..+++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 46679999999999999999999876 4 35566666554
No 134
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=4.6e-05 Score=69.59 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+.-|+|.||||+|||++|+.+|.++|++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 45589999999999999999999999887755
No 135
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=4.6e-05 Score=69.74 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr 99 (238)
.+.-|+|.||||+|||++|+.+|.++|++++.+ ++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 356699999999999999999999999887654 44443
No 136
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.51 E-value=4.1e-05 Score=69.33 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~d 96 (238)
+..|+|.||+||||||++..|++.++..+||+|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3578999999999999999999999998998876
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.51 E-value=6.4e-05 Score=65.55 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr 99 (238)
.+..++|.||||+|||++|+.+++.++.+++. ..+++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 45679999999999999999999999887654 444443
No 138
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=4.3e-05 Score=69.22 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~ 100 (238)
+.-|+|.||||+|||++|+.+|.+.+.+++++ .+++..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 45589999999999999999999999987754 444443
No 139
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.46 E-value=7.2e-05 Score=66.18 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+|||++|+.|++.++.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 345689999999999999999999999888755
No 140
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.46 E-value=6.6e-05 Score=64.89 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~ 100 (238)
.+..++|+||||+||||+++.|++.++.+++.+ .+++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 345689999999999999999999998776644 455543
No 141
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00013 Score=64.15 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..++|.||||+|||++++.+++++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999999988
No 142
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.45 E-value=6.7e-05 Score=64.13 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
.+..++|.||||+||||+++.+++.++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 35678999999999999999999999876554
No 143
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.44 E-value=7.3e-05 Score=63.43 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+||||+++.+++.++.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 344589999999999999999999998876644
No 144
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.43 E-value=9.3e-05 Score=62.62 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+|||++|+.+++..+.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 556799999999999999999999999887654
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.42 E-value=8.2e-05 Score=63.69 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.6
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
++|+||||+||||+++.|+..++...+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999988765544
No 146
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.41 E-value=7.4e-05 Score=68.50 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeechh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~ 95 (238)
+..|+|+||||+||||+++.||+.++.+++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 456999999999999999999999999988765
No 147
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.41 E-value=8.7e-05 Score=64.25 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCee-chhhhHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHI-SMGSLVR 99 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g-------~~~i-s~~dllr 99 (238)
.++.+|.|.|++||||||+++.|+..++ ...+ +.++++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 5788999999999999999999999875 3445 7777654
No 148
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.40 E-value=0.0001 Score=64.50 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCee--chhhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHI--SMGSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-g~~~i--s~~dllr 99 (238)
.+.-|+|.||||+|||++|+.+++.+ +.+++ +..+++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 34678999999999999999999998 65544 4444443
No 149
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=7e-05 Score=68.87 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr 99 (238)
.+.-|+|.||||+|||++|+.+|.+++++++++ .+++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 456699999999999999999999999887654 44444
No 150
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=9.3e-05 Score=67.50 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~ 100 (238)
.+.-|+|.||||+|||++|+.+|.+++.+++++ .+++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 345699999999999999999999999887654 455443
No 151
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.36 E-value=0.00011 Score=62.74 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+..++|.||||+|||++++.+++.++.+++.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34588999999999999999999998876643
No 152
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.34 E-value=0.00013 Score=59.71 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4677899999999999999999998875
No 153
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.32 E-value=0.00011 Score=68.58 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
.+..|+|+|.+||||||+++.|+++++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999999986
No 154
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.31 E-value=0.00013 Score=64.68 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+..++|.||||+||||+|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34589999999999999999999999887754
No 155
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.29 E-value=6.8e-05 Score=63.14 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=25.9
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
++|.||||+||||+++.+++.++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 78999999999999999999998776654
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.00017 Score=56.38 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999986
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.28 E-value=0.00013 Score=64.67 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVR 99 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr 99 (238)
+..|+|.||||+|||++|+.+++.++.+++. ..+++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 3458899999999999999999999887654 445543
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.27 E-value=0.00015 Score=60.66 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.7
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
++|+||||+||||+++.|+..++...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 89999999999999999999987766544
No 159
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.24 E-value=0.00082 Score=65.85 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHHhhcCCCChHHHHHHHHHH---c------------------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSALYKQIANAVN---E------------------ 118 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr~~~~~~s~~g~~i~~~l~---~------------------ 118 (238)
.+.-++|.||||+|||.+|+.+|.+.+.+++++ .+++.+.+..... .+++.+. +
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~---~vr~lF~~Ar~~~P~IifiDEiDsl~~~R 586 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA---NVREIFDKARQAAPCVLFFDELDSIAKAR 586 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHH---HHHHHHHHHHTTCSEEEECSCGGGCC---
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHH---HHHHHHHHHHHcCCceeechhhhHHhhcc
Confidence 345689999999999999999999999987754 5666554433221 2222111 0
Q ss_pred ------CCCCChHHHHHHHHHHHHcccccCCceEEEcC---CcCCHHHHHHHHhhcCCCEEEEEecCHHHHHHHHhcCC
Q 026464 119 ------GKLVPEDVIFALLSKRLEEGYYRGESGFILDG---IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 119 ------g~~vpd~~i~~ll~~~l~~~~~~~~~g~IlDG---fPrt~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+....+.++.+++ ..|... ....++++=| .|..+..| +-.-+.+|..|++..|+..-+..+.+..
T Consensus 587 ~~~~~~~~~~~~rv~~~lL-~~mdg~--~~~~~V~vi~aTN~p~~lD~A--llRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 587 GGNIGDGGGAADRVINQIL-TEMDGM--STKKNVFIIGATNRPDIIDPA--ILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp -----------CHHHHHHH-HHHHSS--CSSSSEEEECC-CCSSSSCHH--HHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred CCCCCCCchHHHHHHHHHH-HHHhCC--CCCCCEEEEEeCCCchhCCHh--HcCCCcceEEEEECCcCHHHHHHHHHHH
Confidence 0112233444444 345433 1233444433 45555543 2344578999999999987777766543
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.22 E-value=0.00016 Score=57.96 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
+++.|+||+||||||+.+.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36889999999999999999999874
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.22 E-value=0.00015 Score=56.68 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999999987
No 162
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.21 E-value=0.00056 Score=59.57 Aligned_cols=30 Identities=13% Similarity=0.010 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+.++.|+|-|.-||||||+.++|.+.++-.
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr 113 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPR 113 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 368999999999999999999999998543
No 163
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.21 E-value=0.00016 Score=64.08 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+||||+++.+++.++.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 456799999999999999999999998876543
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.21 E-value=0.00016 Score=59.01 Aligned_cols=37 Identities=11% Similarity=-0.059 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeechhhhH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g-----~~~is~~dll 98 (238)
.+..++|.||||+||||+++.+++.++ +.+++..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 456789999999999999999998864 3455555544
No 165
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.20 E-value=0.00018 Score=59.22 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dl 97 (238)
.+..|+|+||+||||||+|..|+++.+ ..|+.|.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 456799999999999999999998877 77777643
No 166
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=0.00024 Score=62.29 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
..++|+||||+||||+++.++..++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45899999999999999999999987543
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.16 E-value=0.00018 Score=58.28 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+..++|+||+||||||+.+.|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345789999999999999999998763
No 168
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.16 E-value=0.00026 Score=56.95 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh---CCC--eechhhhHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVR 99 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~---g~~--~is~~dllr 99 (238)
..++|.|+||+||||+++.++..+ +.+ +++..+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 678999999999999999999877 333 355555443
No 169
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.15 E-value=0.00024 Score=64.95 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC--CCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g--~~~is~ 94 (238)
+..++|.||||+|||++|+.+|+.++ ++++.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 45689999999999999999999998 666543
No 170
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00017 Score=56.04 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|+||+|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999887
No 171
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.13 E-value=0.00025 Score=60.25 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
++|+||||+||||+++.|+..++...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 89999999999999999999987766654
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.11 E-value=0.00027 Score=61.39 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~ 95 (238)
..++|.||||+||||+++.+++.++.+++.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 45899999999999999999999998877553
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.07 E-value=0.00035 Score=64.54 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.-++|+||||+||||+++.++.+.+.+++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 3488999999999999999999999887654
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.06 E-value=0.00029 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.|+|.|+||+|||++|+.+++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999875
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.05 E-value=0.00034 Score=62.49 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..++|.||||+|||++++.+++.++.+++.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 346799999999999999999999998876643
No 176
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.01 E-value=0.00031 Score=64.18 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-CCCee--chhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHI--SMGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-g~~~i--s~~dllr~ 100 (238)
.+.-|+|.||||+|||++|+.++..+ +.+++ +..+++..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 34678999999999999999999998 65544 45555543
No 177
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.99 E-value=0.00028 Score=69.10 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech--hhhHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR 99 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~--~dllr 99 (238)
.|.-|+|.||||+|||++|+.+|+++|.+++.+ .+++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 456799999999999999999999999877654 44443
No 178
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.96 E-value=0.0031 Score=54.56 Aligned_cols=128 Identities=9% Similarity=0.063 Sum_probs=70.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCC-CeechhhhHHhhcCC---CCh-----HHHHHHHHHHcCCCCChH-------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA-----LYKQIANAVNEGKLVPED------- 125 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~-~~is~~dllr~~~~~---~s~-----~g~~i~~~l~~g~~vpd~------- 125 (238)
.+..|+|+|| ||+|+.+.|.+.+.- ..+++...-|.--.. +.+ --+.+.+.+.+|..+.-.
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y 180 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 180 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence 4556888887 799999999987641 223332222211000 000 124666777777755211
Q ss_pred -HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecC-HHHHHHHHhcCCCCCCCccccccCCCC
Q 026464 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGAR 203 (238)
Q Consensus 126 -~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~~~ 203 (238)
+-.+-+.+.+++ +..+|||.-+....+... ....| .+|++..| .+++. +|.+|..
T Consensus 181 Gt~~~~V~~~~~~-----G~~vildid~~g~~~l~~--~~~~p-i~IfI~pps~~~L~-~L~~R~t-------------- 237 (295)
T 1kjw_A 181 GTSVQSVREVAEQ-----GKHCILDVSANAVRRLQA--AHLHP-IAIFIRPRSLENVL-EINKRIT-------------- 237 (295)
T ss_dssp EEEHHHHHHHHHT-----TCEEEECCCTTHHHHHHH--TTCCC-EEEEECCSSHHHHH-HHCTTSC--------------
T ss_pred eeeHHHHHHHHhc-----CCeEEEEeCHHHHHHHHh--cccCC-eEEEEECCCHHHHH-HHHhcCC--------------
Confidence 112223344443 467899976554433322 11234 78888876 45554 4766541
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 026464 204 FSAADAASAWKEKFRIYA 221 (238)
Q Consensus 204 ~~~dd~~e~v~~Rl~~y~ 221 (238)
++.+++|++...
T Consensus 238 ------~~~i~~rl~~a~ 249 (295)
T 1kjw_A 238 ------EEQARKAFDRAT 249 (295)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH
Confidence 245788887774
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00046 Score=64.14 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+..++|.||||+||||+++.+++.+|++++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45789999999999999999999999877643
No 180
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.92 E-value=0.00043 Score=56.98 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..++|+||+||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56779999999999999999999877
No 181
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.92 E-value=0.00058 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.5
Q ss_pred CCCe-EEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGV-QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~-~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++. .++|.||||+||||+++.|++.+
T Consensus 44 ~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 44 NRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3443 68999999999999999999987
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.91 E-value=0.00052 Score=55.72 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++..+.|+||+||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3677899999999999999999998874
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.91 E-value=0.00057 Score=61.31 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
.+..++|.|||||||||+++.|+..++..+++
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 56689999999999999999999988766555
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.90 E-value=0.00051 Score=59.50 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eechhhhH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLV 98 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~---g~~--~is~~dll 98 (238)
.+..++|.||||+||||+++.+++.+ +.+ +++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34558899999999999999999987 554 45555543
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.88 E-value=0.00057 Score=58.78 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
..++|.|+||+||||+++.+++.++.+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45889999999999999999999987765
No 186
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.88 E-value=0.00063 Score=59.37 Aligned_cols=27 Identities=26% Similarity=0.132 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|.|+||+||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 578899999999999999999999876
No 187
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.88 E-value=0.0043 Score=56.75 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++.+|+++|++||||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
No 188
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.85 E-value=0.00049 Score=56.86 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
...++|.||||+||||+|..|++.++-..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 345899999999999999999998864444
No 189
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.83 E-value=0.00077 Score=54.32 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
..++|.|+||+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46899999999999999999998754
No 190
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.83 E-value=0.00062 Score=53.88 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+..+|+|+|.+|+||||+...|...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999999854
No 191
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.82 E-value=0.00044 Score=60.06 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
.++|.||||+|||++++.+++.++.+++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 48999999999999999999999876543
No 192
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.80 E-value=0.00074 Score=53.87 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|.|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999875
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.80 E-value=0.00068 Score=59.43 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
+..++|.||||+|||++++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467999999999999999999999874
No 194
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.79 E-value=0.00073 Score=61.86 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
..++|.||||+||||+++.|++.++.+++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4689999999999999999999998876654
No 195
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.78 E-value=0.00046 Score=55.68 Aligned_cols=25 Identities=16% Similarity=0.027 Sum_probs=22.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
++|+|++||||||+|+.|+.. +.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 789999999999999999977 6543
No 196
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.78 E-value=0.00072 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|.||||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999876
No 197
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.77 E-value=0.00077 Score=62.63 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
-++|+||||+||||+++.|+...+.+++.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 399999999999999999999998776654
No 198
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.76 E-value=0.00024 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCee
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g~~~i 92 (238)
.|+|.|+||+|||++|+.+++..+ +++
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 388999999999999999998776 443
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.75 E-value=0.0011 Score=60.97 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
....++|+||||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999997
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.75 E-value=0.00076 Score=63.21 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is 93 (238)
++..++|+||||+||||+++.|+..++.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 46689999999999999999999999766543
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.70 E-value=0.00084 Score=62.20 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLV 98 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dll 98 (238)
.+.-++|.||||+|||++++.+++.++.+++. ..++.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 34568999999999999999999999877664 44444
No 202
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.70 E-value=0.00091 Score=58.72 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|.||||+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999986
No 203
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.69 E-value=0.00086 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La 84 (238)
++-.++|+||+||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 67789999999999999999988
No 204
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.68 E-value=0.00062 Score=59.53 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|.||||+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999999987
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.68 E-value=0.00095 Score=54.23 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.+.|+||+||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999999754
No 206
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.67 E-value=0.0012 Score=52.07 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999999864
No 207
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.65 E-value=0.0013 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
-+..+|+|+|++|+||||+.+.|+..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999863
No 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.62 E-value=0.0012 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..++|+|+|||||||++..|+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999653
No 209
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.00094 Score=58.24 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh------CCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~------g~~~is~ 94 (238)
.+..++|.||||+||||+++.+++.+ +..++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 45578999999999999999999987 6655543
No 210
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.0012 Score=53.19 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC--CCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g--~~~is~ 94 (238)
++..++|+|+|||||||++..++...+ +.+++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 667899999999999999999987433 334444
No 211
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.56 E-value=0.0015 Score=52.24 Aligned_cols=26 Identities=15% Similarity=-0.002 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+...++|.|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999999875
No 212
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.56 E-value=0.0015 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 467789999999999999999999876
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.55 E-value=0.0011 Score=57.46 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC----CC--eechhhhHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE----VP--HISMGSLVRQ 100 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g----~~--~is~~dllr~ 100 (238)
+..++|.||||+|||+++..++..+. .. ++++.+++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 46789999999999999999998654 43 3566666553
No 214
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.55 E-value=0.0057 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCeEEEE--EcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVL--IGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l--~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++| .|+||+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4456777 9999999999999999876
No 215
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.53 E-value=0.0011 Score=57.19 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
+..+++.||||+||||+++.+++.++..++.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34567777799999999999999998766644
No 216
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.53 E-value=0.001 Score=65.26 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+..|+|+||||+||||+++.|+..++.+++.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 456799999999999999999999998876654
No 217
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0013 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358899999999999999999887
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.52 E-value=0.0017 Score=57.13 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..+.|+||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999876
No 219
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.52 E-value=0.0018 Score=50.80 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999999887
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.50 E-value=0.0019 Score=62.68 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|+||||+||||+++.|++.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999997
No 221
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.49 E-value=0.0018 Score=51.22 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+..++...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999888754
No 222
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.49 E-value=0.001 Score=57.71 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=22.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g 88 (238)
++|.||||+|||++++.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 99999999999999999999886
No 223
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.49 E-value=0.0014 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
..++|.|+||+|||++|+.+++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3488999999999999999998764
No 224
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.48 E-value=0.0016 Score=56.76 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|+||+||||||+++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 67789999999999999999999887
No 225
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.48 E-value=0.0016 Score=49.70 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|++||||||+...|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 35688999999999999999999864
No 226
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.48 E-value=0.0016 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
...+|+|+|++||||||+.+.|+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998653
No 227
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.47 E-value=0.0015 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+....+|+|+|++|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999999864
No 228
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.47 E-value=0.0022 Score=49.18 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999754
No 229
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.0017 Score=56.88 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..++|.||||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999988
No 230
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.44 E-value=0.0018 Score=51.13 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+.+..+|+|+|.+|+||||+...|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999999999864
No 231
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.44 E-value=0.0018 Score=56.25 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 232
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.42 E-value=0.0021 Score=54.49 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.++|+||+||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 366789999999999999999999865
No 233
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.40 E-value=0.0019 Score=58.81 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..++|.||||+||||+++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999877
No 234
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.40 E-value=0.0019 Score=52.65 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+++++++|+||||||++|..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999886544
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.39 E-value=0.0022 Score=55.70 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..+.|+||.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0017 Score=53.18 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
++..+.|+|||||||||++..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 6778999999999999999999984
No 237
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0017 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g 88 (238)
++|.||||+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998864
No 238
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0017 Score=56.66 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHhC
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g 88 (238)
++|.||||+||||+++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 88999999999999999999864
No 239
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.38 E-value=0.0016 Score=51.03 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+.+..+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999999753
No 240
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.38 E-value=0.0021 Score=51.59 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..++++|+|||||||.+-.++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999997777665
No 241
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.37 E-value=0.002 Score=62.41 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCCCe-EEEEEcCCCCCchHHHHHHHHHhCCCee--chhhhH
Q 026464 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLV 98 (238)
Q Consensus 60 p~~~~-~i~l~G~PGSGKsT~a~~La~~~g~~~i--s~~dll 98 (238)
|.++. .++|.||||+|||++|+.|++.++.+++ ++.++.
T Consensus 484 ~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 34454 6999999999999999999999986554 454443
No 242
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.37 E-value=0.0027 Score=50.17 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+....+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999999999864
No 243
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.00092 Score=53.27 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
+..+.|+|++||||||+++.|+..+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999999998874
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.33 E-value=0.0022 Score=55.43 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++.+++|+|++||||||++..||..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999765
No 245
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.33 E-value=0.0022 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+|+|++|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998754
No 246
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.33 E-value=0.0021 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 46689999999999999999999754
No 247
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.32 E-value=0.0053 Score=57.01 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+.++.|+|-|..||||+|+.+.|.+.++-.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~pr 70 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPR 70 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGG
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCcc
Confidence 478999999999999999999999998543
No 248
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0023 Score=52.47 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
++-.++|.|+|||||||++..++... ++.+++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56688999999999999998887643 34455543
No 249
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.31 E-value=0.0024 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|++|+||||+...|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999864
No 250
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.30 E-value=0.0025 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+|+|+|++|+||||+...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998653
No 251
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0025 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++|.||||+||||+++.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999864
No 252
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.29 E-value=0.0023 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999865
No 253
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.29 E-value=0.0011 Score=64.90 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeec--hhhhHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQ 100 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is--~~dllr~ 100 (238)
.+..++|+||||+||||+++.||..++..++. ..+++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 44568899999999999999999998766554 4455443
No 254
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.29 E-value=0.0025 Score=54.46 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.++|+|+||+||||++..|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999998764
No 255
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.002 Score=56.10 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|.||||+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 256
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.27 E-value=0.0029 Score=51.18 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
+..+|+|+|.+||||||+...|+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998753
No 257
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.27 E-value=0.0026 Score=50.70 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+.+..+|+|+|.+|+||||+...|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999999999754
No 258
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.26 E-value=0.0037 Score=48.99 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|++|+||||+...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999999875
No 259
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.24 E-value=0.0028 Score=57.88 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..|+++|++||||||++..||..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
No 260
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.24 E-value=0.0026 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|++||||||+.+.|+..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999865
No 261
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.23 E-value=0.0027 Score=49.00 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999865
No 262
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.22 E-value=0.0025 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
..+|+|+|++|+||||+.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999975
No 263
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.22 E-value=0.003 Score=50.11 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+||||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45679999999999999999999854
No 264
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.19 E-value=0.0034 Score=48.49 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 35689999999999999999999743
No 265
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.18 E-value=0.0029 Score=48.91 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|++||||||+...|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45688999999999999999998764
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.18 E-value=0.0023 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+||.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 367789999999999999999998543
No 267
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.18 E-value=0.0034 Score=54.77 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
+..++|.||||+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889999999999999999999865
No 268
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0021 Score=49.98 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La 84 (238)
.+..+|+|+|++|+||||+...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 577899999999999999999886
No 269
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.17 E-value=0.0034 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..+|+|+|.+||||||+...|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999875
No 270
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.16 E-value=0.0029 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+.+|+|+|.||+||||+...|+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 271
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.16 E-value=0.0036 Score=53.50 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
...++|.||||+|||++|..||..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 446999999999999999999997644
No 272
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.16 E-value=0.0031 Score=47.88 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999999864
No 273
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0034 Score=55.91 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++.++.|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467899999999999999999999876
No 274
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.15 E-value=0.0025 Score=56.40 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
+.++.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999987654
No 275
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.14 E-value=0.0028 Score=53.93 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|.||||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 276
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.14 E-value=0.0031 Score=48.46 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|+||+||||+..+|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 4578999999999999999998743
No 277
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.14 E-value=0.0035 Score=60.78 Aligned_cols=41 Identities=27% Similarity=0.562 Sum_probs=31.0
Q ss_pred CCCCe-EEEEEcCCCCCchHHHHHHHHHh---C--CCeechhhhHHh
Q 026464 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (238)
Q Consensus 60 p~~~~-~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~dllr~ 100 (238)
|.+|. .++|+||||+|||++|+.|++.+ + +..++++++...
T Consensus 517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 517 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 44554 69999999999999999999986 3 345566555543
No 278
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.13 E-value=0.0031 Score=48.90 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4578999999999999999999864
No 279
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.13 E-value=0.0033 Score=49.41 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.|....+|+|+|++|+||||+..+|...
T Consensus 12 ~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 12 APDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457789999999999999999998754
No 280
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.13 E-value=0.0042 Score=47.94 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999999999975
No 281
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.13 E-value=0.0032 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+|+|.+|+||||+...|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999864
No 282
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.003 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
...+|+|+|.+|+||||+...|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999975
No 283
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.11 E-value=0.0029 Score=48.74 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|++|+||||+...|...
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Confidence 35578999999999999999999853
No 284
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.11 E-value=0.0032 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|++|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhC
Confidence 3578999999999999999999753
No 285
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.10 E-value=0.003 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..+|+|+|++|+||||+...|....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 56789999999999999999998643
No 286
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.10 E-value=0.0038 Score=54.88 Aligned_cols=27 Identities=37% Similarity=0.526 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..+.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 367889999999999999999998654
No 287
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.10 E-value=0.003 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|++|+||||+...|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 5678999999999999999999754
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0037 Score=49.18 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
....+|+|+|++||||||+...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998643
No 289
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.09 E-value=0.0032 Score=49.10 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 46689999999999999999999863
No 290
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.08 E-value=0.0038 Score=55.10 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366789999999999999999999876
No 291
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.08 E-value=0.0033 Score=48.11 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999854
No 292
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.07 E-value=0.0026 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56679999999999999999997543
No 293
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.07 E-value=0.0033 Score=50.11 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 46789999999999999999999864
No 294
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.07 E-value=0.0038 Score=50.27 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+|+|+|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998754
No 295
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.05 E-value=0.0034 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHh
Q 026464 66 WVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|.||||+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 296
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.04 E-value=0.0032 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+|+|++|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998754
No 297
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.04 E-value=0.003 Score=52.78 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+||.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999997543
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.03 E-value=0.0035 Score=51.41 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+-++.|+||.||||||+.+.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557889999999999999999864
No 299
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.03 E-value=0.0025 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 5678999999999999999999853
No 300
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.02 E-value=0.0037 Score=49.34 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+..++...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 46689999999999999999998764
No 301
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.02 E-value=0.0033 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
....+|+|+|.+|+||||+...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4668999999999999999999864
No 302
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.01 E-value=0.0034 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..+|+|+|++|+||||+.+.|....
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45789999999999999999997653
No 303
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.01 E-value=0.004 Score=47.94 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
....+|+|+|.+|+||||+...|...-
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 456899999999999999999998653
No 304
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.00 E-value=0.0035 Score=51.74 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|++|+||||+...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 35689999999999999999999754
No 305
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.00 E-value=0.0044 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
....|.|+|+|||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999999754
No 306
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0038 Score=50.26 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 46689999999999999999999864
No 307
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.99 E-value=0.0057 Score=56.78 Aligned_cols=106 Identities=10% Similarity=-0.014 Sum_probs=62.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g---~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~ 137 (238)
+.++.|+|-|..||||+|+.++|.+.++ +.++++..=-..+. +.. .+......
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~----------------~~~--------yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER----------------AQP--------YLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH----------------TSC--------TTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh----------------cch--------HHHHHHHh
Confidence 4789999999999999999999999884 44443321000000 000 11122222
Q ss_pred ccccCCceEEEcCCcC------------C-------HHHHHHHHhh----cCCCEEEEEecCHHHHHHHHhcCCCCC
Q 026464 138 GYYRGESGFILDGIPR------------T-------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFS 191 (238)
Q Consensus 138 ~~~~~~~g~IlDGfPr------------t-------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (238)
.. ..+.-.|.|.+-. + ..+...|+.. +.+++.++|+++.++..+|+..|..++
T Consensus 354 lP-~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 354 IP-ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp CC-CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred CC-CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 11 1233455564321 1 1233333222 457899999999999999999886543
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.98 E-value=0.0037 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La 84 (238)
..+|+|+|.||+||||+.+++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999885
No 309
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.97 E-value=0.0035 Score=52.46 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+||.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 310
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.97 E-value=0.0039 Score=48.27 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999754
No 311
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.97 E-value=0.005 Score=47.89 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35679999999999999999999864
No 312
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.96 E-value=0.0041 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+|+|+|+||+||||+...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999863
No 313
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.96 E-value=0.0036 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.++|+|+|||||||++..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999998643
No 314
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0046 Score=47.80 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 46689999999999999999999764
No 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.95 E-value=0.004 Score=56.77 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+..|+|+|+||+||||++..|+..+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999876
No 316
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.94 E-value=0.0031 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+|+|+|++|+||||+.++++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 317
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.94 E-value=0.0034 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+||.||||||+.+.|+..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 318
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.94 E-value=0.0038 Score=52.17 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...++|+|+|.||+||||+...|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 36789999999999999999998753
No 319
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.93 E-value=0.0047 Score=57.30 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++.+|.|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 468899999999999999999999876
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.93 E-value=0.0032 Score=53.90 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 67789999999999999999998654
No 321
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.92 E-value=0.0049 Score=54.96 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.++|+||+||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56689999999999999999999876
No 322
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.92 E-value=0.0043 Score=51.76 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.|||||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999754
No 323
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.92 E-value=0.0064 Score=47.51 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 35578999999999999999999755
No 324
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.90 E-value=0.0037 Score=48.97 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
....+|+|+|.+|+||||+.+.+...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3567899999999999999988876653
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.90 E-value=0.0046 Score=48.61 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|++|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999754
No 326
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.90 E-value=0.004 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999865
No 327
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.90 E-value=0.0035 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 67789999999999999999998644
No 328
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.89 E-value=0.0037 Score=53.15 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+||.||||||+.+.|+-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 367789999999999999999998654
No 329
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.89 E-value=0.0044 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+-.+.|+||.||||||+.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6678999999999999999999864
No 330
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.88 E-value=0.0055 Score=53.59 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999876
No 331
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.87 E-value=0.0041 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
-.+.|+||.||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999998654
No 332
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.87 E-value=0.0057 Score=50.82 Aligned_cols=27 Identities=15% Similarity=-0.103 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..++++|+||+||||.+-.++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999888877
No 333
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.87 E-value=0.0046 Score=52.56 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+-++.|+||.||||||+.+.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36778999999999999999999864
No 334
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.87 E-value=0.0038 Score=53.21 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+||.||||||+.+.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 366789999999999999999998654
No 335
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.87 E-value=0.0037 Score=52.56 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-++.|+||.||||||+.+.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 66789999999999999999998654
No 336
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0053 Score=48.58 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999864
No 337
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.86 E-value=0.0046 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46689999999999999999999864
No 338
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.85 E-value=0.0062 Score=50.55 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+...+++.|.+||||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999765
No 339
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.85 E-value=0.004 Score=52.75 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+||.||||||+.+.|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 367789999999999999999998654
No 340
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.85 E-value=0.0027 Score=50.82 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
..+.+|+|+|++||||||+.+.|+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999999998864
No 341
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.84 E-value=0.0044 Score=48.26 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|++|+||||+...|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 5689999999999999999999854
No 342
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.84 E-value=0.0039 Score=52.13 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66789999999999999999998654
No 343
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.84 E-value=0.0039 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66789999999999999999998654
No 344
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.84 E-value=0.0042 Score=53.34 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCeechh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~ 95 (238)
..++|.|++|+||||+++.+++..++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 47889999999999999999999886666654
No 345
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.83 E-value=0.0045 Score=48.75 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.8
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
+....+|+|+|.+|+||||+...|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34678999999999999999998864
No 346
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.82 E-value=0.0042 Score=52.59 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+||.||||||+.+.|+-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 347
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.80 E-value=0.0057 Score=54.03 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|+|+|||||||++..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 77889999999999999999999876
No 348
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.79 E-value=0.0053 Score=48.72 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
....+|+|+|.+|+||||+...|....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 456899999999999999999998653
No 349
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.79 E-value=0.0042 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.+.|+||.||||||+.+.|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66789999999999999999998654
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.78 E-value=0.0059 Score=46.42 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+|+|.+|+||||+...+...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999754
No 351
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.78 E-value=0.0074 Score=52.65 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
.+..++|.||||+||||+++.+++.+....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 345699999999999999999999987643
No 352
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.77 E-value=0.0031 Score=58.54 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++|.||||+|||++|+.|++..+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 589999999999999999998874
No 353
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.77 E-value=0.0041 Score=48.94 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+|+|+|.+|+||||+...|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999987554
No 354
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0049 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999864
No 355
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.77 E-value=0.0052 Score=48.68 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|++|+||||+..++...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999863
No 356
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.77 E-value=0.0038 Score=61.45 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..++|+|+||+||||+++.|++.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999987
No 357
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.77 E-value=0.006 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999754
No 358
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.77 E-value=0.0037 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-++.|+||.||||||+.+.|+..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56678999999999999999997654
No 359
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.77 E-value=0.0048 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..|+|.|+||+|||++|+.+++..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEEECCCCchHHHHHHHHHHhC
Confidence 348899999999999999999864
No 360
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0032 Score=49.69 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
....+|+|+|.+|+||||+...|...-
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 366899999999999999999998654
No 361
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.76 E-value=0.0054 Score=53.91 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh--CCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~--g~~~is~ 94 (238)
++..++|.||||+||||+|..++... .+.++++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34567899999999999999999764 3567777
No 362
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.75 E-value=0.0042 Score=61.12 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=24.3
Q ss_pred CCCCe-EEEEEcCCCCCchHHHHHHHHHh
Q 026464 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 60 p~~~~-~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
|.+|. .++|+||||+|||++|+.|++.+
T Consensus 584 ~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 584 PNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 44554 79999999999999999999987
No 363
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.74 E-value=0.0058 Score=47.73 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|++|+||||+...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999998754
No 364
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.73 E-value=0.0064 Score=47.65 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|.+|+||||+..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999999984
No 365
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.72 E-value=0.0037 Score=49.65 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+.+..+|+|+|.+|+||||+.+.+...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 346789999999999999999877654
No 366
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.72 E-value=0.0044 Score=48.12 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+...|...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 5678999999999999999999843
No 367
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.72 E-value=0.0048 Score=52.37 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-.+.|+||.||||||+.+.|+..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0073 Score=47.52 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.+|+||||+...|...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 5678999999999999999999863
No 369
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.71 E-value=0.0046 Score=52.10 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.+.|+||.||||||+.+.|+..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56689999999999999999998644
No 370
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.70 E-value=0.0065 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|++|+||||+..++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999863
No 371
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.70 E-value=0.0046 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-++.|+||.||||||+.+.|+-.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 67789999999999999999998654
No 372
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.70 E-value=0.0064 Score=54.04 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeechhh
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGS 96 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~---g--~~~is~~d 96 (238)
..| ++..+.|+|||||||||++..++... | +.+|+..+
T Consensus 57 Gi~-~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYP-RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEE-TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred Ccc-CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 344 67789999999999999999999764 2 34565543
No 373
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.70 E-value=0.0068 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++.+|.|+|+||+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998765
No 374
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.69 E-value=0.0056 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
...+|+|+|.+|+||||+...|..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999999864
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.68 E-value=0.0064 Score=56.49 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++.+|+|+|+|||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999765
No 376
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.67 E-value=0.0075 Score=49.16 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999998753
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.67 E-value=0.0057 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+...+...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999753
No 378
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.67 E-value=0.0085 Score=49.99 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..++|++.|+||+||||++-.++..+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34789999999999999988888765
No 379
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.66 E-value=0.0042 Score=55.13 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+..++|+||.||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456899999999999999999998764
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.64 E-value=0.0057 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999754
No 381
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.62 E-value=0.005 Score=47.67 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 382
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.62 E-value=0.0064 Score=48.87 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|.+|+||||+...|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4668999999999999999999875
No 383
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.61 E-value=0.0074 Score=48.10 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999854
No 384
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0067 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
....+|+|+|.||+||||+..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557899999999999999999873
No 385
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.61 E-value=0.0069 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999765
No 386
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.60 E-value=0.007 Score=47.92 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.3
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
+.+..+|+|+|.+|+||||+...+..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 35678999999999999999999874
No 387
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.60 E-value=0.0053 Score=51.82 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999998654
No 388
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.60 E-value=0.0083 Score=53.24 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh----CCCeechhh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGS 96 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~----g~~~is~~d 96 (238)
+-.++|+||+||||||+.+.|+..+ +-..+..+|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed 160 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED 160 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence 3489999999999999999998765 334444444
No 389
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.60 E-value=0.0065 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+...+...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999864
No 390
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.58 E-value=0.0086 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999999864
No 391
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.55 E-value=0.007 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+|+|+|||||||+...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999754
No 392
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.55 E-value=0.0072 Score=48.44 Aligned_cols=27 Identities=11% Similarity=-0.071 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+|+|+|.+|+||||+..+|....
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998653
No 393
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.55 E-value=0.0068 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-..
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 56789999999999999999998644
No 394
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.55 E-value=0.0075 Score=48.13 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|++|+||||+..++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999864
No 395
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.54 E-value=0.0072 Score=48.79 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|.+|+||||+...|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3568999999999999999999974
No 396
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0068 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
+..+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 5678999999999999999999864
No 397
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.52 E-value=0.0084 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
++-.++|.|+||+||||+|..++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 667899999999999999988764
No 398
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.52 E-value=0.0074 Score=53.70 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.+..+|+|+|.+||||||+++.+.-.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 5688999999999999999999954443
No 399
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.48 E-value=0.0058 Score=52.91 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
++..+.|.|+|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778999999999999999999975
No 400
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.48 E-value=0.0078 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 66789999999999999999998654
No 401
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.46 E-value=0.0095 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..++++|++|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37788899999999999999999776
No 402
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.46 E-value=0.009 Score=57.75 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|+|+||+||||+++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 403
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.46 E-value=0.0095 Score=47.81 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCCeech
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~ 94 (238)
.+.-++|.|++|+||||+|..|.+ .|...++=
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaD 46 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVCD 46 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEES
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecC
Confidence 345689999999999999999987 47666644
No 404
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.44 E-value=0.008 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 66789999999999999999998654
No 405
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.43 E-value=0.011 Score=47.78 Aligned_cols=27 Identities=15% Similarity=-0.069 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++...+++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346789999999999999999999887
No 406
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.43 E-value=0.0092 Score=47.31 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998754
No 407
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.42 E-value=0.0086 Score=52.94 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
++..+.|.|+|||||||+|..++... .+.+++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 67789999999999999999998654 34566654
No 408
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.42 E-value=0.0092 Score=47.77 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+..++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 35689999999999999999999854
No 409
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.41 E-value=0.011 Score=53.70 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
++-.++|+||+||||||+.+.|+..+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999998874
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.41 E-value=0.0078 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999999764
No 411
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.40 E-value=0.0084 Score=53.37 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 66789999999999999999998654
No 412
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.40 E-value=0.0076 Score=48.05 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
....+|+|+|.+|+||||+...|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3668999999999999999999874
No 413
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0068 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.+|+||||+...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 414
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.38 E-value=0.057 Score=46.64 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..++|.||||+||||.+..|++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999864
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.0071 Score=55.53 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+.++.|+||.||||||+++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 66789999999999999999998754
No 416
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.37 E-value=0.0068 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La 84 (238)
...+|+|+|.+|+||||+..+|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999999885
No 417
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.36 E-value=0.0085 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999998544
No 418
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.36 E-value=0.0089 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 66789999999999999999998654
No 419
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.34 E-value=0.011 Score=53.79 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++..|+++|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457788899999999999999999765
No 420
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.33 E-value=0.008 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|.||+||||+...|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999975
No 421
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.33 E-value=0.2 Score=48.28 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC-CCeechhhhHHhhcC---CCC---h--HHHHHHHHHHcCCCCChH-------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELS---PRS---A--LYKQIANAVNEGKLVPED------- 125 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g-~~~is~~dllr~~~~---~~s---~--~g~~i~~~l~~g~~vpd~------- 125 (238)
.+..|+|+|| ||+|+.++|.+.+. -..+++...-|.--. .+. - --+++.+.+.+|..+.-.
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 4566888888 49999999998774 122333322332110 010 0 124566667777654311
Q ss_pred -HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCHHHHHHHHhcCC
Q 026464 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESE 188 (238)
Q Consensus 126 -~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (238)
+-.+-+...+++ +..+|||.-+.. +..+... ..| .+|++..|.-..+++|.+|.
T Consensus 607 Gt~~~~v~~~~~~-----g~~~ildi~~~~---~~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~ 662 (721)
T 2xkx_A 607 GTSVQSVREVAEQ-----GKHCILDVSANA---VRRLQAAHLHP-IAIFIRPRSLENVLEINKRI 662 (721)
T ss_pred eeeHHHHHHHHHC-----CCcEEEeCCHHH---HHHHHhcccCC-EEEEEeCCcHHHHHHHhccC
Confidence 123334444443 467899975432 3333321 234 78888877544445576665
No 422
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.33 E-value=0.0074 Score=57.07 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~ 89 (238)
..++|+||||+||||+++.|+..++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 46899999999999999999998753
No 423
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.32 E-value=0.0077 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+-++.|+||.||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998654
No 424
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.31 E-value=0.012 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999776
No 425
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.30 E-value=0.012 Score=46.81 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.||+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999854
No 426
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.30 E-value=0.0079 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-++.|+||.||||||+.+.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 66789999999999999999998654
No 427
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.30 E-value=0.0096 Score=47.55 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 35689999999999999999999753
No 428
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.28 E-value=0.0058 Score=47.53 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=11.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999998743
No 429
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.27 E-value=0.0099 Score=53.01 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++-.+.|+||.||||||+.+.|+--+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 367789999999999999999998644
No 430
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.009 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.+|+||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999999865
No 431
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.25 E-value=0.0091 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
++-.+.|+|+|||||||++..|+-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 6778999999999999999988743
No 432
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.25 E-value=0.0053 Score=53.39 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+||.||||||+.+.|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 367789999999999999999998765
No 433
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.23 E-value=0.0098 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 56679999999999999999998644
No 434
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.23 E-value=0.013 Score=51.47 Aligned_cols=28 Identities=11% Similarity=-0.067 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..| ++..+.|.|+|||||||+|..++..
T Consensus 118 Gl~-~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIE-SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBC-SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344 6778999999999999999999986
No 435
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.20 E-value=0.014 Score=50.16 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCC
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVP 90 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~ 90 (238)
..++|.|++|+||||+++.+++..+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 378999999999999999999987543
No 436
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.18 E-value=0.0084 Score=46.98 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La 84 (238)
.+..+|+|+|.+|+||||+...+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999999885
No 437
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.15 E-value=0.0071 Score=53.56 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 66789999999999999999998644
No 438
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.12 E-value=0.012 Score=51.14 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|.|+|||||||+|..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 56789999999999999999999764
No 439
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.12 E-value=0.011 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+-.+.|+||.||||||+.+.|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 36778999999999999999999853
No 440
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.11 E-value=0.0065 Score=53.24 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
+..++|+||+||||||+.+.|+..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45799999999999999999997763
No 441
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.11 E-value=0.014 Score=46.68 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.+|+||||+...+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999854
No 442
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.09 E-value=0.014 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 35689999999999999999999764
No 443
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.06 E-value=0.012 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..++|+|++||||||+.+.|+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 345799999999999999999974
No 444
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.04 E-value=0.012 Score=47.43 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCCchHHHHH-HHHHh
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADN-LSKLL 87 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~-La~~~ 87 (238)
+.+..+|+|+|.+|+||||+... +...+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34668999999999999999998 54544
No 445
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.013 Score=47.45 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999864
No 446
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.02 E-value=0.014 Score=51.79 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~ 95 (238)
++..++|.|+||+||||+|..++... .+.+|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 66789999999999999999998754 34566663
No 447
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.01 E-value=0.013 Score=53.41 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++|.|+|||||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999876
No 448
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.01 E-value=0.015 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q 026464 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 65 ~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
..+|+|+.||||||+.+.|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999987765
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.99 E-value=0.013 Score=54.80 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 58 ~~p~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+.|.++-++.|+||.||||||+.+.|+-.+
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 446788899999999999999999998654
No 450
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.99 E-value=0.013 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.||+||||+...|...
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999853
No 451
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=94.98 E-value=0.34 Score=41.64 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhCCC-eechhhhHHhh----cCCCC----hHHHHHHHHHHcCCCCChH-------
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP-HISMGSLVRQE----LSPRS----ALYKQIANAVNEGKLVPED------- 125 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g~~-~is~~dllr~~----~~~~s----~~g~~i~~~l~~g~~vpd~------- 125 (238)
.+.-|+|+|| ||+|+.++|.+++.-. ..++..--|.- ..... ..-+.+.+.+.+|..+.-.
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~Y 175 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLY 175 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcccee
Confidence 3344778887 5999999999987532 23332222211 00000 0123566666776544211
Q ss_pred -HHHHHHHHHHHcccccCCceEEEcCCcCCHHHHHHHHhhcCCCEEEEEecC-HHHHHHHHhcC
Q 026464 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLES 187 (238)
Q Consensus 126 -~i~~ll~~~l~~~~~~~~~g~IlDGfPrt~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R 187 (238)
+..+-+.+.+++ +..+|||--+.... .+.....--.+|++..| .+++.+|+..|
T Consensus 176 GT~~~~V~~~~~~-----gk~viLdid~qg~~---~lk~~~~~pi~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 176 GTSVASVREVAEK-----GKHCILDVSGNAIK---RLQVAQLYPVAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp EEEHHHHHHHHHH-----TCEEEECCCTHHHH---HHHHTTCCCEEEEECCSCHHHHHHTCTTS
T ss_pred EEehHHHHHHHHc-----CCcEEEeccchhhh---hcccccccceEEEEECCCHHHHHHHHhCC
Confidence 123334445554 46788986554433 34333222356777765 46666655443
No 452
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.0048 Score=58.44 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~g~~~ 91 (238)
..++|+||||+|||++|+.+++.++...
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCce
Confidence 3699999999999999999999876443
No 453
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.94 E-value=0.0041 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La 84 (238)
....+|+|+|.+|+||||+...|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999988775
No 454
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.89 E-value=0.014 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+.|+|++||||||+.+.|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 35678999999999999999998 43
No 455
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.88 E-value=0.016 Score=50.36 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+...++|+|+.||||||+.+.|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45678999999999999999999653
No 456
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.87 E-value=0.0074 Score=53.51 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+-.+.|+||.||||||+.+.|+--+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 66789999999999999999998643
No 457
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.85 E-value=0.014 Score=50.32 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+|+|+|+||+||||+.+.|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35568999999999999999999753
No 458
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.098 Score=45.45 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=47.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccccCCce
Q 026464 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESG 145 (238)
Q Consensus 66 i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~~~~~g 145 (238)
|+|+|| ||+|+.++|.+.+.-.+-..-. +.. .+.+|+.++-+.+.++ +++ +..
T Consensus 148 vVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~r--------------~i~~~~fis~~~V~~v----l~~-----Gk~ 200 (308)
T 3kfv_A 148 VVILGP---VADIAMQKLTAEMPDQFEIAET-VSR--------------TDSPSKIIKLDTVRVI----AEK-----DKH 200 (308)
T ss_dssp EEEEST---THHHHHHHHHHHCTTTEEECCC-C----------------------CCCHHHHHHH----HHT-----TCE
T ss_pred EEEeCc---cHHHHHHHHHHhCccccccccc-ccc--------------cccCCCeecHHHHHHH----HHC-----CCc
Confidence 788899 7999999999887432221100 000 1456677765554444 333 577
Q ss_pred EEEcCCcCCHHHHHHHHhh-cCCCEEEEEec-CHHHHHHHHhcCC
Q 026464 146 FILDGIPRTRIQAEILDQI-VDVDLVINFKS-IEDQLVKRNLESE 188 (238)
Q Consensus 146 ~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~-~~e~l~~Rl~~R~ 188 (238)
+|||=-|. -++.+... ..| .+|++.- +.++|.+| .+|.
T Consensus 201 ~ILDId~Q---Ga~~lk~~~~~p-i~IFI~PPS~eeL~~r-r~R~ 240 (308)
T 3kfv_A 201 ALLDVTPS---AIERLNYVQYYP-IVVFFIPESRPALKAL-RQWL 240 (308)
T ss_dssp EEECCCHH---HHHHHHHTTCCC-EEEEEEESCHHHHHHH-HHHH
T ss_pred EEEEECHH---HHHHHHhcCCCC-EEEEEeCCCHHHHHHH-HhcC
Confidence 89984443 33444332 345 4555555 45667664 4443
No 459
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.80 E-value=0.016 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+.|+|++||||||+.+.|+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCc
Confidence 34999999999999999999854
No 460
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.78 E-value=0.01 Score=55.12 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..++|+||+||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45569999999999999999998766
No 461
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.75 E-value=0.017 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
...++|.|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998765
No 462
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.74 E-value=0.019 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..|+|+|++||||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999876
No 463
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.73 E-value=0.015 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchHHHHHHHHH
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999754
No 464
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.72 E-value=0.02 Score=49.58 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.++|.|+||+||||++..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999998664
No 465
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.67 E-value=0.0089 Score=48.12 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
....+|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998765
No 466
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.65 E-value=0.018 Score=52.19 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
.+..+.|+|++||||||+.+.|+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4458999999999999999999863
No 467
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.62 E-value=0.0071 Score=47.85 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=6.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.+|+||||+...|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 5578999999999999999988754
No 468
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.61 E-value=0.021 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.++|.|+||+||||++..++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999988753
No 469
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.60 E-value=0.015 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCchHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
+..+.|+|++||||||+.+.|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 45789999999999999998863
No 470
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.55 E-value=0.016 Score=49.95 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
-...|+|+|++|+||||+.+.|+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 446789999999999999999864
No 471
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.54 E-value=0.02 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.++.++.|+|+||+||||+.+.|+.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4678999999999999999999997
No 472
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.52 E-value=0.023 Score=46.54 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.6
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
|-+..+|+|+|.+|+|||++..++...
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhC
Confidence 445678999999999999999998753
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.51 E-value=0.018 Score=53.43 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNL 83 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~L 83 (238)
++-.++|+|++||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 6788999999999999999994
No 474
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.47 E-value=0.022 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCchHHHHHHHHH
Q 026464 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 63 ~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
..+|+|+|.||+||||+...|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999754
No 475
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.45 E-value=0.02 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 60 p~~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
|..+-.|.|+|.||+||||+...|...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445668999999999999999998743
No 476
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.47 E-value=0.0069 Score=48.25 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|.+|+||||+...+..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4678899999999999999988864
No 477
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.44 E-value=0.024 Score=50.06 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++-++.|+|++|+||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3678899999999999999999998764
No 478
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.40 E-value=0.024 Score=51.34 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+++|+|+||+||||+.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999754
No 479
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.40 E-value=0.025 Score=49.62 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.9
Q ss_pred CCCCCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 57 ~~~p~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
+..| ++ .+.|.|+||+||||+|-.++...
T Consensus 24 GGl~-~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 24 GGMQ-SG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CCBC-SE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCc-CC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 4455 45 68999999999999988877543
No 480
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.38 E-value=0.0087 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
....+|+|+|.+|+||||+...|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999998873
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.24 E-value=0.027 Score=50.13 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeechhh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGS 96 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~-----g~~~is~~d 96 (238)
++..++|.|+||+||||+|..++... .+.+|+++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 56678889999999999999998764 345666643
No 482
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.23 E-value=0.026 Score=51.41 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
.++-++.|+||+||||||+.+.|+....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3677899999999999999999998764
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.19 E-value=0.027 Score=52.21 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.+.|.|+|||||||+++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66789999999999999999998654
No 484
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.19 E-value=0.024 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+.|+||.||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998766
No 485
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.18 E-value=0.025 Score=52.81 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998654
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.03 Score=53.15 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.3
Q ss_pred CCCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 59 ~p~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.+..+-.+.|+||.||||||+.+.|+-.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35678899999999999999999998654
No 487
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.12 E-value=0.022 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|+||.||||||+.+.|+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 56789999999999999999998766
No 488
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.10 E-value=0.024 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++..+.|+||.||||||+.+.|+..+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 56679999999999999999998765
No 489
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.04 E-value=0.029 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.||+||||+...+...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999998654
No 490
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.03 E-value=0.028 Score=47.42 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+|+|.||+||||+...|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999754
No 491
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.98 E-value=0.044 Score=45.20 Aligned_cols=27 Identities=15% Similarity=-0.098 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
.++...+++|++||||||.+-.++..+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788999999999999999998877
No 492
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.97 E-value=0.026 Score=53.29 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~g 88 (238)
++..+.|+||.||||||+.+.|+..+.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 567899999999999999999987653
No 493
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.92 E-value=0.032 Score=46.90 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+|+++|.+|+||||+...|...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999743
No 494
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=93.92 E-value=0.2 Score=44.80 Aligned_cols=99 Identities=8% Similarity=0.018 Sum_probs=52.2
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeechhhhHHhhcCCCChHHHHHHHHHHcCCCCChHHHHHHHHHHHHcccc
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~~~g~~~is~~dllr~~~~~~s~~g~~i~~~l~~g~~vpd~~i~~ll~~~l~~~~~ 140 (238)
.++..|+|+||+| +|++++|.+.+.-.+.++ .|. ...+..-|. + -..++ ..-+++.+++
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~-pR~gE~dG~---~----Y~Fv~----~~~V~~~~~~--- 288 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSE-PRDAGTDQR---S----SGIIR----LHTIKQIIDQ--- 288 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCC-CCCSSSCCC---------CCCC----HHHHHHHHTT---
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCC-CCCcccCCc---c----CCcCc----HHHHHHHHHc---
Confidence 4566688999998 899999998875444442 221 111110000 0 01233 2334444443
Q ss_pred cCCceEEEcCCcCCHHHHHHHHhh-cCCCEEEEEecCH-HHHHHHHhcC
Q 026464 141 RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIE-DQLVKRNLES 187 (238)
Q Consensus 141 ~~~~g~IlDGfPrt~~qa~~l~~~-~~~d~vI~L~~~~-e~l~~Rl~~R 187 (238)
+..+|||=-| .-++.+... ..| .+|++..|. ++|.+| .+|
T Consensus 289 --Gk~~iLdId~---qg~~~l~~~~~~p-~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 289 --DKHALLDVTP---NAVDRLNYAQWYP-IVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp --TCEEEECCCH---HHHHHHHHTTCCC-EEEEEECCCHHHHHHH-HHH
T ss_pred --CCEEEEEeCH---HHHHHHHhCCCCC-EEEEEeCcCHHHHHHH-Hhc
Confidence 5778999543 344444433 344 566666654 666554 444
No 495
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.90 E-value=0.011 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+.|+|++||||||+.+.|+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 456899999999999999998863
No 496
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.90 E-value=0.032 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
...+++|+|+||+||||+...|+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999754
No 497
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.89 E-value=0.031 Score=48.67 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCchHHHHHHHH
Q 026464 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (238)
Q Consensus 61 ~~~~~i~l~G~PGSGKsT~a~~La~ 85 (238)
.+..+|+|+|.+|+||||+..+|..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred cCcceEEEECCCCccHHHHHHHHhC
Confidence 3567999999999999999988854
No 498
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.85 E-value=0.037 Score=50.17 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHHh
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++-.++|.|+||+||||+|..++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999988653
No 499
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.82 E-value=0.029 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchHHHHHHHHHh
Q 026464 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (238)
Q Consensus 64 ~~i~l~G~PGSGKsT~a~~La~~~ 87 (238)
++|.|+|.||+||||+.+.|....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998763
No 500
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.80 E-value=0.027 Score=51.03 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCchHHHHHHHHH
Q 026464 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (238)
Q Consensus 62 ~~~~i~l~G~PGSGKsT~a~~La~~ 86 (238)
-...|+|+|++||||||+.+.|+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCC
Confidence 3456899999999999999999754
Done!