Query 026465
Match_columns 238
No_of_seqs 250 out of 985
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vut_I AREA, nitrogen regulato 99.7 9.4E-18 3.2E-22 111.6 2.9 37 199-238 2-38 (43)
2 1gnf_A Transcription factor GA 99.7 2.7E-17 9.2E-22 110.9 3.7 39 197-238 3-41 (46)
3 3dfx_A Trans-acting T-cell-spe 99.6 8E-17 2.7E-21 115.3 4.0 39 196-237 5-43 (63)
4 4gat_A Nitrogen regulatory pro 99.6 2E-16 6.8E-21 114.2 2.6 39 197-238 8-46 (66)
5 2kae_A GATA-type transcription 99.6 6.4E-16 2.2E-20 113.0 2.9 40 196-237 6-45 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 5.8E-14 2E-18 111.4 3.8 38 197-237 58-95 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 2E-12 6.8E-17 102.6 2.9 38 197-237 4-41 (115)
8 3ogl_Q JAZ1 incomplete degron 98.7 7.1E-09 2.4E-13 58.3 2.0 18 130-147 4-21 (21)
9 3ogk_Q JAZ1 incomplete degron 98.7 5.5E-09 1.9E-13 59.6 1.3 22 132-154 1-22 (22)
10 2zjr_Z 50S ribosomal protein L 70.4 1.4 4.7E-05 30.6 1.0 27 196-234 28-54 (60)
11 3v2d_5 50S ribosomal protein L 66.0 1.7 5.7E-05 30.1 0.7 27 197-235 29-55 (60)
12 2yrk_A Zinc finger homeobox pr 65.3 1.8 6.2E-05 29.6 0.7 19 216-234 7-25 (55)
13 3cw2_K Translation initiation 60.8 3.6 0.00012 33.0 1.8 32 197-231 102-133 (139)
14 2d74_B Translation initiation 57.2 3.8 0.00013 33.2 1.4 30 199-231 105-134 (148)
15 1nee_A EIF-2-beta, probable tr 55.6 3.7 0.00013 32.9 1.1 30 199-231 103-132 (138)
16 1k81_A EIF-2-beta, probable tr 52.8 1.6 5.4E-05 27.1 -1.2 30 200-232 2-31 (36)
17 1pft_A TFIIB, PFTFIIBN; N-term 52.6 3.2 0.00011 26.9 0.2 31 198-233 5-35 (50)
18 2iqj_A Stromal membrane-associ 52.4 9 0.00031 30.3 2.9 36 197-236 26-61 (134)
19 2owa_A Arfgap-like finger doma 52.0 8.4 0.00029 30.8 2.6 37 197-237 35-71 (138)
20 2olm_A Nucleoporin-like protei 50.4 9.4 0.00032 30.5 2.7 36 198-237 25-60 (140)
21 2crr_A Stromal membrane-associ 50.3 9.8 0.00033 30.4 2.8 36 197-236 28-63 (141)
22 2crw_A ARF GAP 3, ADP-ribosyla 50.3 9.4 0.00032 30.9 2.7 37 197-237 28-64 (149)
23 2e29_A ATP-dependent RNA helic 46.7 7.2 0.00024 29.0 1.3 30 68-98 52-81 (92)
24 1dl6_A Transcription factor II 46.2 11 0.00039 25.4 2.2 32 198-234 11-42 (58)
25 2p57_A GTPase-activating prote 44.3 9.5 0.00032 30.8 1.8 37 197-237 36-72 (144)
26 3dwd_A ADP-ribosylation factor 44.0 14 0.0005 29.8 2.9 36 198-237 38-73 (147)
27 2ds5_A CLPX, ATP-dependent CLP 43.8 13 0.00043 24.8 2.1 31 198-230 11-41 (51)
28 1ovx_A ATP-dependent CLP prote 42.3 12 0.0004 26.5 1.8 31 198-230 18-48 (67)
29 3sub_A ADP-ribosylation factor 42.1 15 0.0005 30.3 2.7 37 197-237 21-57 (163)
30 2jrb_A ORF 1 protein; RNA bind 40.8 23 0.00079 26.3 3.3 25 69-95 46-70 (88)
31 1twf_L ABC10-alpha, DNA-direct 38.2 7.7 0.00026 27.5 0.3 34 195-235 25-60 (70)
32 2b0o_E UPLC1; arfgap, structur 36.5 20 0.0007 30.7 2.9 36 197-236 41-76 (301)
33 2cr8_A MDM4 protein; ZF-ranbp 35.4 19 0.00064 24.3 1.8 23 191-215 4-26 (53)
34 2g2k_A EIF-5, eukaryotic trans 34.8 6.2 0.00021 32.7 -0.7 31 199-231 97-128 (170)
35 3o47_A ADP-ribosylation factor 34.3 17 0.00056 32.0 1.9 35 198-236 37-71 (329)
36 3soo_A LINE-1 type transposase 33.2 37 0.0013 25.1 3.4 26 68-95 45-70 (88)
37 4ar0_A Type IV pilus biogenesi 31.0 62 0.0021 25.0 4.6 22 77-98 65-87 (128)
38 2lvu_A Zinc finger and BTB dom 36.5 11 0.00037 19.2 0.0 13 224-236 4-16 (26)
39 2e9h_A EIF-5, eukaryotic trans 30.1 9.4 0.00032 31.2 -0.4 31 199-231 104-135 (157)
40 2ctu_A Zinc finger protein 483 28.4 26 0.0009 22.3 1.7 38 197-237 17-54 (73)
41 1qyp_A RNA polymerase II; tran 24.4 11 0.00039 25.0 -0.8 37 198-234 15-55 (57)
42 2lvt_A Zinc finger and BTB dom 30.0 16 0.00055 18.9 0.0 13 224-236 4-16 (29)
43 3jue_A Arfgap with coiled-coil 23.8 44 0.0015 29.8 2.9 36 197-236 44-79 (368)
44 3h0g_L DNA-directed RNA polyme 23.3 37 0.0013 23.6 1.7 31 194-231 17-47 (63)
45 2lvr_A Zinc finger and BTB dom 28.8 18 0.0006 18.7 0.0 13 224-236 5-17 (30)
46 2k1p_A Zinc finger RAN-binding 23.0 37 0.0013 20.2 1.5 24 197-230 5-28 (33)
47 1lko_A Rubrerythrin all-iron(I 22.6 13 0.00045 30.7 -0.9 27 197-231 154-180 (191)
48 2nnz_A Hypothetical protein; b 22.5 1.1E+02 0.0037 24.5 4.7 32 67-98 27-61 (153)
49 2kfq_A FP1; protein, de novo p 22.0 19 0.00066 19.5 0.0 14 224-237 4-17 (32)
50 2j9u_B VPS36, vacuolar protein 21.6 23 0.00078 25.6 0.4 37 195-232 14-50 (76)
51 3mhs_E SAGA-associated factor 21.6 19 0.00065 27.2 -0.1 11 223-233 76-86 (96)
52 2kdx_A HYPA, hydrogenase/ureas 21.0 28 0.00096 26.3 0.8 28 196-231 71-99 (119)
53 3j20_Y 30S ribosomal protein S 20.8 18 0.00063 23.8 -0.3 32 195-232 16-47 (50)
54 2fiy_A Protein FDHE homolog; F 20.1 25 0.00087 31.4 0.4 39 194-233 218-264 (309)
No 1
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.68 E-value=9.4e-18 Score=111.65 Aligned_cols=37 Identities=51% Similarity=0.963 Sum_probs=34.6
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV 238 (238)
Q Consensus 199 ~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l 238 (238)
..|++|+++ +||+||+||+|+ +|||||||+|++||++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 579999997 999999999997 9999999999999964
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.67 E-value=2.7e-17 Score=110.90 Aligned_cols=39 Identities=38% Similarity=0.839 Sum_probs=35.7
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV 238 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l 238 (238)
....|+||+++ +||+||+||+|+ +|||||||||++||+.
T Consensus 3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence 35689999997 999999999997 9999999999999963
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.64 E-value=8e-17 Score=115.28 Aligned_cols=39 Identities=36% Similarity=0.797 Sum_probs=36.0
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 196 ~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
.....|+||+++ .||+||+||+|+ +|||||||+|+++|+
T Consensus 5 ~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 5 RAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNI 43 (63)
T ss_dssp CTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred CCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence 456789999997 999999999997 999999999999985
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.60 E-value=2e-16 Score=114.22 Aligned_cols=39 Identities=49% Similarity=0.913 Sum_probs=36.0
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV 238 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l 238 (238)
....|+||+++ +||+||+||+|. +|||||||||++||++
T Consensus 8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCC
Confidence 46799999997 999999999996 9999999999999863
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.57 E-value=6.4e-16 Score=113.00 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=33.3
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 196 ~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
.....|+||+++ +||+||+||.+..+|||||||||+++|+
T Consensus 6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNK 45 (71)
T ss_dssp --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCC
Confidence 356899999997 9999999544444999999999999986
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.42 E-value=5.8e-14 Score=111.40 Aligned_cols=38 Identities=37% Similarity=0.830 Sum_probs=35.5
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
....|+||+++ .||+||+||+| ++|||||||||++||+
T Consensus 58 ~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 58 AGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNI 95 (115)
T ss_dssp TTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred ccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCC
Confidence 35799999997 99999999999 8999999999999986
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.25 E-value=2e-12 Score=102.56 Aligned_cols=38 Identities=42% Similarity=0.878 Sum_probs=34.0
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
..+.|.||+++ +||+||+||.| .+|||||||||+.+|.
T Consensus 4 ~~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 4 MGRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQ 41 (115)
T ss_dssp --CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhccc
Confidence 46799999997 99999999999 6999999999999885
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=98.67 E-value=7.1e-09 Score=58.34 Aligned_cols=18 Identities=56% Similarity=0.741 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHhhhhhh.....
Q 026465 130 PQRAASLDRFRQKRKERC..... 147 (238)
Q Consensus 130 paRkaSL~RF~eKRK~R~..... 147 (238)
.+|++||+||+||||+|+
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 499999999999999984
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=98.66 E-value=5.5e-09 Score=59.60 Aligned_cols=22 Identities=55% Similarity=0.777 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhhhcccccch....
Q 026465 132 RAASLDRFRQKRKERCFDKKVRY.... 154 (238)
Q Consensus 132 RkaSL~RF~eKRK~R~~~kk~~Y.... 154 (238)
|++||+||+||||+|..+ +.||
T Consensus 1 Rk~SLqRFleKRk~R~~~-~~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTS-KAPYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhc-cCCC....
Confidence 789999999999999876 5677
No 10
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=70.44 E-value=1.4 Score=30.57 Aligned_cols=27 Identities=26% Similarity=0.789 Sum_probs=19.8
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhhhhhh
Q 026465 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 234 (238)
Q Consensus 196 ~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~ 234 (238)
.....|.+||.. --+..+|..|| +|+-
T Consensus 28 p~l~~c~~cG~~-----------~~pH~vc~~CG-~Y~g 54 (60)
T 2zjr_Z 28 PNLTECPQCHGK-----------KLSHHICPNCG-YYDG 54 (60)
T ss_dssp CCCEECTTTCCE-----------ECTTBCCTTTC-BSSS
T ss_pred CCceECCCCCCE-----------eCCceEcCCCC-cCCC
Confidence 457799999984 23468999999 4443
No 11
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=66.04 E-value=1.7 Score=30.13 Aligned_cols=27 Identities=26% Similarity=0.897 Sum_probs=19.6
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhh
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~ 235 (238)
....|.+||.. --+..+|-.|| +|+-+
T Consensus 29 ~l~~c~~cGe~-----------~~~H~vc~~CG-~Y~gr 55 (60)
T 3v2d_5 29 TLVPCPECKAM-----------KPPHTVCPECG-YYAGR 55 (60)
T ss_dssp CCEECTTTCCE-----------ECTTSCCTTTC-EETTE
T ss_pred ceeECCCCCCe-----------ecceEEcCCCC-cCCCE
Confidence 47799999985 23467999999 55443
No 12
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=65.33 E-value=1.8 Score=29.58 Aligned_cols=19 Identities=26% Similarity=0.798 Sum_probs=13.1
Q ss_pred cCCCCCcccchhhhhhhhh
Q 026465 216 RGPSGPRSLCNACGLFWAN 234 (238)
Q Consensus 216 ~gp~G~~~lCNaCGl~~~~ 234 (238)
.+|+||++-|.-||..|.-
T Consensus 7 ~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCccccccCccccc
Confidence 4667777777777776643
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=60.76 E-value=3.6 Score=33.03 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=21.6
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhh
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~ 231 (238)
.--.|..|+.+ .|-+-+++..= -.-|+|||-.
T Consensus 102 ~yVlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECSTCKSL--DTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp CCSSCCSSSSS--CCCSCSSCSTT-TSSCCC----
T ss_pred HeeECCCCCCc--CcEEEEeCCeE-EEEecCCCCC
Confidence 34689999998 88888875332 5789999954
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=57.21 E-value=3.8 Score=33.21 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=23.0
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhhh
Q 026465 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (238)
Q Consensus 199 ~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~ 231 (238)
-.|..|+.+ .|-+-+.+-. --.-|+|||-.
T Consensus 105 VlC~~C~sP--dT~L~k~~r~-~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRDRF-HFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCT--TCCCCBSSSS-BCCCCSSSCCC
T ss_pred EECCCCCCc--CcEEEEeCCE-EEEEecCCCCC
Confidence 589999998 8888886532 24789999954
No 15
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=55.58 E-value=3.7 Score=32.89 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=23.2
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhhh
Q 026465 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (238)
Q Consensus 199 ~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~ 231 (238)
-.|..|+.+ .|-+-+++-.= -.-|+|||-.
T Consensus 103 VlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRP--DTRIIREGRIS-LLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSC--SSCCEEETTTT-EEECSTTSCC
T ss_pred EECCCCCCc--CcEEEEcCCeE-EEEccCCCCC
Confidence 589999998 88888875332 5789999953
No 16
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=52.76 E-value=1.6 Score=27.12 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=20.6
Q ss_pred cccccccccCCCCccccCCCCCcccchhhhhhh
Q 026465 200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232 (238)
Q Consensus 200 ~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~ 232 (238)
.|..|+-+ +|-+-+++..- -.-|+|||-..
T Consensus 2 lC~~C~~p--eT~l~~~~~~~-~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEGRVH-LLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSC--EEEEEEETTEE-EEEEETTTEEE
T ss_pred CCcCCCCC--CcEEEEeCCcE-EEEhhcCCCcc
Confidence 58899987 77777764221 24599999643
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.59 E-value=3.2 Score=26.92 Aligned_cols=31 Identities=19% Similarity=0.566 Sum_probs=17.1
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhhhhh
Q 026465 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA 233 (238)
Q Consensus 198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~ 233 (238)
...|.+|+.+ ++ +..+......|..||+-|.
T Consensus 5 ~~~CP~C~~~----~l-~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA----EL-IYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC----CE-EEETTTTEEEESSSCCBCC
T ss_pred cEeCcCCCCc----ce-EEcCCCCeEECcccCCccc
Confidence 3467777651 22 2233333577777777654
No 18
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=52.41 E-value=9 Score=30.35 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=30.4
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhc
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV 236 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g 236 (238)
....|..||. .-|.|=.=..| -.+|-.|.-..+.-|
T Consensus 26 ~N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~lG 61 (134)
T 2iqj_A 26 DNKFCADCQS---KGPRWASWNIG-VFICIRCAGIHRNLG 61 (134)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCCcCCcCcC---CCCCeEEecCC-EEEhHhhhHHHhcCC
Confidence 4679999998 56999998889 699999987777766
No 19
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=52.05 E-value=8.4 Score=30.77 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=30.6
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
....|..||. .-|.|=.=..| -.+|-.|.-..+.-|+
T Consensus 35 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 35 ENRTCFDCES---RNPTWLSLSFA-VFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHTTCT
T ss_pred CCCcCCCCcC---CCCCeEEecCC-EEEhHhhhHHHhCCCC
Confidence 3569999998 56999998889 6999999887777663
No 20
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=50.44 E-value=9.4 Score=30.45 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=30.1
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
+..|..||. .-|.|=.=..| -.+|-.|.-..+.-|+
T Consensus 25 N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQ---RGPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCS---SCCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCC---CCCCceeeccC-EEEchhccchhccCCC
Confidence 569999998 58999998889 6999999877776664
No 21
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.31 E-value=9.8 Score=30.40 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=30.1
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhc
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV 236 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g 236 (238)
....|+.|+. .-|.|=.=..| -.||-.|.-..+.-|
T Consensus 28 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG 63 (141)
T 2crr_A 28 DNKYCADCEA---KGPRWASWNIG-VFICIRCAGIHRNLG 63 (141)
T ss_dssp GGSSCSSSCC---SSCCSEETTTT-EECCHHHHHHHHHHC
T ss_pred cCCcCCCCCC---CCCCeEEeccC-eEEhhhhhHhHhcCC
Confidence 4569999998 57999988888 699999987777766
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.28 E-value=9.4 Score=30.90 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=30.7
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
.+..|..|+. .-|.|=.=..| -.+|-.|.-..+.-|+
T Consensus 28 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 28 TNKVCFDCGA---KNPSWASITYG-VFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTSBCSSSCC---BSCCCEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCCcCCCCcC---CCCCcEEeccC-EEEchhcchhhccCCC
Confidence 4669999998 67999998889 6999999877776663
No 23
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=46.69 E-value=7.2 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=25.5
Q ss_pred CCcceeEEeCCEEEEEcCCChHHHHHHHHHh
Q 026465 68 NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLL 98 (238)
Q Consensus 68 ~~~qLTIfY~G~V~Vfd~vp~dKaqaim~la 98 (238)
.-..||+.=++.-.||| ||.+.+++|+...
T Consensus 52 ~v~~m~l~~d~~GavFD-vP~e~~~~~~~~~ 81 (92)
T 2e29_A 52 QITRMCLLKGNMGVCFD-VPTTESERLQAEW 81 (92)
T ss_dssp TCEEEEECTTSSEEEEE-EEHHHHHHHHHHC
T ss_pred hhCeEEEecCCCEEEEE-CcHHHHHHHHhhC
Confidence 34578999999999998 9999999999653
No 24
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=46.25 E-value=11 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=20.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhhhhhh
Q 026465 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 234 (238)
Q Consensus 198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~ 234 (238)
...|..|+.+ +....-..| ...|..|||-+..
T Consensus 11 ~~~Cp~C~~~----~lv~D~~~g-e~vC~~CGlVl~e 42 (58)
T 1dl6_A 11 RVTCPNHPDA----ILVEDYRAG-DMICPECGLVVGD 42 (58)
T ss_dssp CCSBTTBSSS----CCEECSSSC-CEECTTTCCEECC
T ss_pred cccCcCCCCC----ceeEeCCCC-eEEeCCCCCEEec
Confidence 4478888863 244444445 6888888887653
No 25
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=44.31 E-value=9.5 Score=30.77 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=30.3
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
....|.+||. .-|.|=.=..| ..+|-.|.-..+.-|+
T Consensus 36 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 36 TNKACFDCGA---KNPSWASITYG-VFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGGBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCCCcC---CCCCeEEeccC-EEEhhhchHHHcCCCC
Confidence 3669999998 56999988888 6999999877776663
No 26
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=44.01 E-value=14 Score=29.81 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.0
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
+..|..|+. .-|.|=.=..| -.||-.|.-..+.-|+
T Consensus 38 N~~CaDCga---~~P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 38 NNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCccCCCCC---CCCCeEEeccc-EeEhHhhChHHhcCCC
Confidence 569999998 56999998889 7999999877776653
No 27
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=43.78 E-value=13 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=21.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhh
Q 026465 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (238)
Q Consensus 198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl 230 (238)
..+|+-||.+.......=.|| | ...||-|=.
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~ 41 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVD 41 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-C-CEehHHHHH
Confidence 358999999755555555666 3 479999953
No 28
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=42.32 E-value=12 Score=26.50 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=22.0
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhh
Q 026465 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (238)
Q Consensus 198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl 230 (238)
..+|+-||.+.......=.|| | ...||-|=.
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHH
Confidence 358999999754555555666 3 489999953
No 29
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=42.10 E-value=15 Score=30.28 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=30.3
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
....|+.|+. .-|.|=.=..| -.||-.|.-..+.-|+
T Consensus 21 ~N~~CaDCga---~~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 21 SNNKCFDCGI---SNPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCCccccCCC---CCCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 3669999998 57999998889 7999999776666553
No 30
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=40.83 E-value=23 Score=26.25 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.0
Q ss_pred CcceeEEeCCEEEEEcCCChHHHHHHH
Q 026465 69 SSQLTLSFRGQVYVFDSVTPDKVQAVL 95 (238)
Q Consensus 69 ~~qLTIfY~G~V~Vfd~vp~dKaqaim 95 (238)
++-|+++|+|++..|.+ .+|.++.+
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHHH
Confidence 67899999999999985 77777765
No 31
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.20 E-value=7.7 Score=27.51 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=21.8
Q ss_pred CcccccccccccccCCCCccccCCCCCcccchhhhh--hhhhh
Q 026465 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL--FWANK 235 (238)
Q Consensus 195 ~~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl--~~~~~ 235 (238)
..-.-.|..||.. .... .+...-|..||- +|+++
T Consensus 25 ~~v~Y~C~~CG~~--~e~~-----~~d~irCp~CG~RILyK~R 60 (70)
T 1twf_L 25 ATLKYICAECSSK--LSLS-----RTDAVRCKDCGHRILLKAR 60 (70)
T ss_dssp CCCCEECSSSCCE--ECCC-----TTSTTCCSSSCCCCCBCCC
T ss_pred ceEEEECCCCCCc--ceeC-----CCCCccCCCCCceEeEecC
Confidence 4556799999984 2222 223468999996 55543
No 32
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=36.46 E-value=20 Score=30.66 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=28.9
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhc
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV 236 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g 236 (238)
....|..|+. .-|.|-.-..| ..+|-.|--..+.-|
T Consensus 41 ~n~~c~dc~~---~~p~w~s~~~g-~~~c~~cs~~hr~lg 76 (301)
T 2b0o_E 41 GNSQCCDCGA---ADPTWLSTNLG-VLTCIQCSGVHRELG 76 (301)
T ss_dssp TTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCCcCCCCCC---CCCCeEEeecC-eEEcHHHHHHHHhhC
Confidence 3669999998 46999999999 799999965555544
No 33
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=35.37 E-value=19 Score=24.29 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=17.4
Q ss_pred CCCCCcccccccccccccCCCCccc
Q 026465 191 GQDDSPSETSCTHCGISSKSTPMMR 215 (238)
Q Consensus 191 ~~~~~~~~~~C~~C~~t~~~Tp~wR 215 (238)
|.......|.|..|.+ ..+|+-|
T Consensus 4 ~~~~~eD~WkC~~C~k--~N~Pl~r 26 (53)
T 2cr8_A 4 GSSGSEDEWQCTECKK--FNSPSKR 26 (53)
T ss_dssp CSSCCSCCEECSSSCC--EECSSCC
T ss_pred CcCCCcceeecccccc--cCCCccc
Confidence 3445678999999998 4888755
No 34
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=34.81 E-value=6.2 Score=32.72 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=20.7
Q ss_pred ccccccccccCCCCccccCCCC-Ccccchhhhhh
Q 026465 199 TSCTHCGISSKSTPMMRRGPSG-PRSLCNACGLF 231 (238)
Q Consensus 199 ~~C~~C~~t~~~Tp~wR~gp~G-~~~lCNaCGl~ 231 (238)
-.|..|+.+ .|-+-+..-.+ --.-|+|||-.
T Consensus 97 VlC~~C~sP--dT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENP--ETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSS--CEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCC--ccEEEEecCCCEEEEEccccCCc
Confidence 479999997 88887731112 13669999853
No 35
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=34.32 E-value=17 Score=31.97 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.4
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhhhhhhhc
Q 026465 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV 236 (238)
Q Consensus 198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g 236 (238)
...|+.|+. .-|.|=.=..| -.+|-.|.--.+.-|
T Consensus 37 n~~c~dc~~---~~~~~~~~~~~-~~~c~~c~~~hr~~~ 71 (329)
T 3o47_A 37 NNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLG 71 (329)
T ss_dssp TTBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHC
T ss_pred CCcCCCCCC---CCCCeEEecCC-EEEChhhhhhhcccC
Confidence 559999998 68899888888 699999987777665
No 36
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=33.25 E-value=37 Score=25.14 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCcceeEEeCCEEEEEcCCChHHHHHHH
Q 026465 68 NSSQLTLSFRGQVYVFDSVTPDKVQAVL 95 (238)
Q Consensus 68 ~~~qLTIfY~G~V~Vfd~vp~dKaqaim 95 (238)
=++.|+++|.|++..|.+ .+|.++.+
T Consensus 45 YPakLsf~~eGeiksF~d--kqkl~eFi 70 (88)
T 3soo_A 45 CEVXLAFXCDGEIXTFSD--LQSLRXFA 70 (88)
T ss_dssp CCCCEEEECSSSEEEESS--HHHHHHHH
T ss_pred ccceEEEEecCceeccCC--HHHccchh
Confidence 367899999999999986 67777765
No 37
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=30.99 E-value=62 Score=24.96 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=11.0
Q ss_pred CCEEEE-EcCCChHHHHHHHHHh
Q 026465 77 RGQVYV-FDSVTPDKVQAVLLLL 98 (238)
Q Consensus 77 ~G~V~V-fd~vp~dKaqaim~la 98 (238)
.|.|.+ ++++|.++|-.+++-.
T Consensus 65 ~G~VTl~l~~v~~~~al~~iL~~ 87 (128)
T 4ar0_A 65 NGKMTLSLKDVPWDQALDLVMQA 87 (128)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHH
T ss_pred CceeeEeecCCCHHHHHHHHHHH
Confidence 344444 4556666554444333
No 38
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.52 E-value=11 Score=19.19 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=8.6
Q ss_pred cchhhhhhhhhhc
Q 026465 224 LCNACGLFWANKV 236 (238)
Q Consensus 224 lCNaCGl~~~~~g 236 (238)
.|+-||..|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 4 VCERCGKRFVQSS 16 (26)
Confidence 5777777776544
No 39
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.13 E-value=9.4 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=20.9
Q ss_pred ccccccccccCCCCccccCCCC-Ccccchhhhhh
Q 026465 199 TSCTHCGISSKSTPMMRRGPSG-PRSLCNACGLF 231 (238)
Q Consensus 199 ~~C~~C~~t~~~Tp~wR~gp~G-~~~lCNaCGl~ 231 (238)
-.|..|+.+ .|-+-+..-.+ --.-|+|||-.
T Consensus 104 VlC~~C~sP--dT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENP--ETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCS--CCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCC--ccEEEEecCCCEEEEEccCCCCC
Confidence 479999997 88887621112 13669999853
No 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.40 E-value=26 Score=22.25 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=25.2
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~ 237 (238)
....|..|+..-.....+++ .....|..||..|.....
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~ 54 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAA 54 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCS
T ss_pred CCeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHH
Confidence 35689999875334444444 334789999998876543
No 41
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=24.36 E-value=11 Score=24.96 Aligned_cols=37 Identities=24% Similarity=0.605 Sum_probs=24.4
Q ss_pred cccccccccccCC--CCccccCCCCC--cccchhhhhhhhh
Q 026465 198 ETSCTHCGISSKS--TPMMRRGPSGP--RSLCNACGLFWAN 234 (238)
Q Consensus 198 ~~~C~~C~~t~~~--Tp~wR~gp~G~--~~lCNaCGl~~~~ 234 (238)
...|..||-.... +-+||....+. -..|..||-.|+-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5689999973111 22588766553 2589999988864
No 42
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.99 E-value=16 Score=18.86 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=8.4
Q ss_pred cchhhhhhhhhhc
Q 026465 224 LCNACGLFWANKV 236 (238)
Q Consensus 224 lCNaCGl~~~~~g 236 (238)
.|+-||..|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 4 QCVMCGKAFTQAS 16 (29)
Confidence 5777777766543
No 43
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=23.79 E-value=44 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=29.8
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhc
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV 236 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g 236 (238)
....|..|+. .-|.|=.=..| -.+|-.|.--.+.-|
T Consensus 44 ~n~~c~dc~~---~~p~w~s~~~g-~~~c~~c~~~hr~lg 79 (368)
T 3jue_A 44 GNAQCCDCRE---PAPEWASINLG-VTLCIQCSGIHRSLG 79 (368)
T ss_dssp TTTBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CcCcCCCCCC---CCCCeEEecCC-eEEcHhHHHHHhccC
Confidence 4669999998 57999998889 799999976666655
No 44
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.34 E-value=37 Score=23.59 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=19.7
Q ss_pred CCcccccccccccccCCCCccccCCCCCcccchhhhhh
Q 026465 194 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (238)
Q Consensus 194 ~~~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~ 231 (238)
...-.-.|..||.. .... .+...-|.-||-+
T Consensus 17 ~~~v~Y~C~~Cg~~--~~l~-----~~~~iRC~~CG~R 47 (63)
T 3h0g_L 17 PATMIYLCADCGAR--NTIQ-----AKEVIRCRECGHR 47 (63)
T ss_dssp --CCCCBCSSSCCB--CCCC-----SSSCCCCSSSCCC
T ss_pred CCCeEEECCCCCCe--eecC-----CCCceECCCCCcE
Confidence 33456799999994 3322 1335789999854
No 45
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.76 E-value=18 Score=18.66 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=7.8
Q ss_pred cchhhhhhhhhhc
Q 026465 224 LCNACGLFWANKV 236 (238)
Q Consensus 224 lCNaCGl~~~~~g 236 (238)
.|+-||..|....
T Consensus 5 ~C~~C~k~f~~~~ 17 (30)
T 2lvr_A 5 VCIHCQRQFADPG 17 (30)
Confidence 5667776665443
No 46
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.96 E-value=37 Score=20.21 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=16.4
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhh
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl 230 (238)
..|.|..|+. ..-.|| .-||.||.
T Consensus 5 gDW~C~~C~~---~Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 5 NDWQCKTCSN---VNWARR-------SECNMCNT 28 (33)
T ss_dssp SSCBCSSSCC---BCCTTC-------SBCSSSCC
T ss_pred CCcccCCCCC---cccccc-------ccccccCC
Confidence 4688999987 333333 57888874
No 47
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.63 E-value=13 Score=30.66 Aligned_cols=27 Identities=33% Similarity=0.818 Sum_probs=18.3
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhhh
Q 026465 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (238)
Q Consensus 197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~ 231 (238)
..|+|.+||-. -+ |..-| ..|-.||-.
T Consensus 154 ~~~~C~~CG~~--~~-----g~~~p-~~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYV--HE-----GTGAP-ELCPACAHP 180 (191)
T ss_dssp EEEEETTTCCE--EE-----EEECC-SBCTTTCCB
T ss_pred ceEEECCCCCE--ee-----CCCCC-CCCCCCcCC
Confidence 47899999985 21 33333 289999863
No 48
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=22.51 E-value=1.1e+02 Score=24.49 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=24.9
Q ss_pred CCCcceeEEeCCEEEE---EcCCChHHHHHHHHHh
Q 026465 67 SNSSQLTLSFRGQVYV---FDSVTPDKVQAVLLLL 98 (238)
Q Consensus 67 ~~~~qLTIfY~G~V~V---fd~vp~dKaqaim~la 98 (238)
...-+++|-++|+.++ +|+-.|.-|++++.++
T Consensus 27 ~~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 27 GVEMRLRIRFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp SSCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred cCCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 4567799999998775 5666777888888776
No 49
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=22.02 E-value=19 Score=19.52 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=9.3
Q ss_pred cchhhhhhhhhhcC
Q 026465 224 LCNACGLFWANKVG 237 (238)
Q Consensus 224 lCNaCGl~~~~~g~ 237 (238)
-|+-||..|.....
T Consensus 4 ~C~~C~k~f~~~~~ 17 (32)
T 2kfq_A 4 ACPACPKRFMRSDA 17 (32)
T ss_dssp SSSSSCTTHHHHHT
T ss_pred CCCCCCcccCCHHH
Confidence 57778877765543
No 50
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=21.62 E-value=23 Score=25.64 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=23.3
Q ss_pred CcccccccccccccCCCCccccCCCCCcccchhhhhhh
Q 026465 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232 (238)
Q Consensus 195 ~~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~ 232 (238)
....|+|.-|..+ ..+|.+=.--..+..-|-+||++-
T Consensus 14 ~~~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIkP 50 (76)
T 2j9u_B 14 VVSTWVCPICMVS-NETQGEFTKDTLPTPICINCGVPA 50 (76)
T ss_dssp -CEEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCBC
T ss_pred cccceECcccccc-CcCccccCCCCCCCCcccccCccC
Confidence 4468999999854 344444322225677899999753
No 51
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=21.60 E-value=19 Score=27.17 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.5
Q ss_pred ccchhhhhhhh
Q 026465 223 SLCNACGLFWA 233 (238)
Q Consensus 223 ~lCNaCGl~~~ 233 (238)
.+||+||...+
T Consensus 76 RvCn~CGkPI~ 86 (96)
T 3mhs_E 76 RVCEKCGKPLA 86 (96)
T ss_dssp EEETTTCCEEC
T ss_pred hhhhccCCcee
Confidence 47888886544
No 52
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.96 E-value=28 Score=26.31 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=19.2
Q ss_pred cccccccccccccCCCCccccCCCCCcc-cchhhhhh
Q 026465 196 PSETSCTHCGISSKSTPMMRRGPSGPRS-LCNACGLF 231 (238)
Q Consensus 196 ~~~~~C~~C~~t~~~Tp~wR~gp~G~~~-lCNaCGl~ 231 (238)
+..++|.+||.. -.. ..+.. .|-.||-.
T Consensus 71 p~~~~C~~CG~~--~e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHV--FKP------NALDYGVCEKCHSK 99 (119)
T ss_dssp CCEEECSSSSCE--ECS------CCSTTCCCSSSSSC
T ss_pred cceEEcCCCCCE--EeC------CCCCCCcCccccCC
Confidence 457899999985 222 22345 89999865
No 53
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.81 E-value=18 Score=23.75 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=22.1
Q ss_pred CcccccccccccccCCCCccccCCCCCcccchhhhhhh
Q 026465 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232 (238)
Q Consensus 195 ~~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~ 232 (238)
.+..+.|..||.. . .|.. .+.+..|..||.-+
T Consensus 16 ~~~~k~CP~CG~~---~-fm~~--~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 16 IRKNKFCPRCGPG---V-FMAD--HGDRWACGKCGYTE 47 (50)
T ss_dssp ECSSEECSSSCSS---C-EEEE--CSSEEECSSSCCEE
T ss_pred EEecccCCCCCCc---e-EEec--CCCeEECCCCCCEE
Confidence 4567899999983 2 3332 34578999999643
No 54
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.06 E-value=25 Score=31.41 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCcccccccccccccCCCCccccCC-----C--C-Ccccchhhhhhhh
Q 026465 194 DSPSETSCTHCGISSKSTPMMRRGP-----S--G-PRSLCNACGLFWA 233 (238)
Q Consensus 194 ~~~~~~~C~~C~~t~~~Tp~wR~gp-----~--G-~~~lCNaCGl~~~ 233 (238)
+......|.+||.+ +..-.|--.. . + .-..|..||-|++
T Consensus 218 W~~~R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 218 WHYVRIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp EECCTTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred EeecCcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 34556688888886 4455564433 1 1 1378888887765
Done!