Query 026466
Match_columns 238
No_of_seqs 52 out of 54
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 14:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 86.2 2 6.7E-05 34.5 6.7 98 60-180 14-112 (131)
2 1oey_A P67-PHOX, neutrophil cy 33.4 23 0.00077 26.6 2.2 27 130-156 14-40 (83)
3 1kdx_B CREB; complex (transcri 31.8 23 0.00077 22.3 1.7 13 138-150 12-24 (28)
4 2hnh_A DNA polymerase III alph 23.7 31 0.0011 35.1 1.9 49 106-157 404-453 (910)
5 2vzs_A CSXA, EXO-beta-D-glucos 22.4 33 0.0011 34.8 1.9 37 118-155 374-411 (1032)
6 1rp3_A RNA polymerase sigma fa 22.0 1.1E+02 0.0036 23.6 4.3 39 141-179 20-58 (239)
7 2jwk_A Protein TOLR; periplasm 21.1 1.1E+02 0.0036 20.3 3.7 39 118-156 30-74 (74)
8 4dnd_A Syntaxin-10, SYN10; str 20.7 65 0.0022 25.5 2.9 54 60-125 69-122 (130)
9 2al3_A TUG long isoform; TUG U 18.9 50 0.0017 25.2 1.8 18 139-156 29-46 (90)
10 4eu0_A PELD; C-DI-GMP, signali 18.6 30 0.001 30.9 0.5 50 141-194 2-53 (298)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=86.17 E-value=2 Score=34.53 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=61.7
Q ss_pred cHHHHHHHHhhChHHHHHHHHHhcccCCCCc-cchhccccCCcchHHHHhhhHHHHHHHHHHHHHHhhhcccccchhcCC
Q 026466 60 DPELRSVLELATDSELYELERILFGPSYFSP-LLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGW 138 (238)
Q Consensus 60 ~~ELr~~LeLATdEEL~~Lt~ILf~~r~fsP-LlkS~~k~~~~Dy~~i~~~~~~R~~~~~~IE~RFrfLAAD~~TvLRG~ 138 (238)
.|.+...+..++-++|..|..|||++.=-.. +-+++..=.|..+ +.+++++++-.+.|+.
T Consensus 14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~Gk~~~~KknI~~FsGF~~---~~~~~~~~k~~e~l~K---------------- 74 (131)
T 2jx3_A 14 IERIHFFLSKKKTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPF---EKGSVQYKKKEEMLKK---------------- 74 (131)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSSCCCSHHHHHHHHTSSCSSC---CCSSHHHHHHHHHHHH----------------
T ss_pred cHHHHHHHcccCHHHHHHHHHHHcCCCChHhHHHHHHHhcCCCCC---CccHHHHHHHHHHHHc----------------
Confidence 5677788888888999999999999642222 1222221111211 1233444454444442
Q ss_pred CchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhcc
Q 026466 139 RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS 180 (238)
Q Consensus 139 ~vsYReVLl~VC~kLKV~ys~klsT~dLEaEIFLhLL~~~ss 180 (238)
...+-|.++|+=|+|+++. +.++|-+.|+-.|+.=.++
T Consensus 75 --~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~P~~~ 112 (131)
T 2jx3_A 75 --FRNAMLKSICEVLDLERSG--VNSELVKRILNFLMHPKPS 112 (131)
T ss_dssp --HHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTSCC--
T ss_pred --cCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhCcccc
Confidence 1357899999999999984 5788888888777665553
No 2
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=33.39 E-value=23 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=21.4
Q ss_pred cccchhcCCCchHHHHHHHHHhhcCCC
Q 026466 130 DARSTLRGWRPSYRNVLLAVRKNLNIP 156 (238)
Q Consensus 130 D~~TvLRG~~vsYReVLl~VC~kLKV~ 156 (238)
|++.+==.++++|++..-.||+||+++
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 443333357999999999999999997
No 3
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=31.76 E-value=23 Score=22.32 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.7
Q ss_pred CCchHHHHHHHHH
Q 026466 138 WRPSYRNVLLAVR 150 (238)
Q Consensus 138 ~~vsYReVLl~VC 150 (238)
++||||.||-+.-
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 5899999998753
No 4
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=23.66 E-value=31 Score=35.12 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=36.5
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhcccccchh-cCCCchHHHHHHHHHhhcCCCC
Q 026466 106 IEQDLEEREDFIASLESRFLFLAADARSTL-RGWRPSYRNVLLAVRKNLNIPC 157 (238)
Q Consensus 106 i~~~~~~R~~~~~~IE~RFrfLAAD~~TvL-RG~~vsYReVLl~VC~kLKV~y 157 (238)
|+...+.|+..++-+.+++ |.|-+..+ -=....-|.++-||++-|++|+
T Consensus 404 iDf~~~rR~evi~Yv~~kY---G~~~va~i~T~~t~~~k~aiRDvgrvlg~~~ 453 (910)
T 2hnh_A 404 VDFCMEKRDQVIEHVADMY---GRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 453 (910)
T ss_dssp CEECGGGHHHHHHHHHHHH---CGGGEEEECCEEECCHHHHHHHHHHHTTCCH
T ss_pred eecccccHHHHHHHHHHHh---CcccEEEEeehhhhhHHHHHHHHHHHhCCCH
Confidence 5666889999999999985 66653221 1125667899999999999886
No 5
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=22.43 E-value=33 Score=34.79 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHhhhcccccchhc-CCCchHHHHHHHHHhhcCC
Q 026466 118 ASLESRFLFLAADARSTLR-GWRPSYRNVLLAVRKNLNI 155 (238)
Q Consensus 118 ~~IE~RFrfLAAD~~TvLR-G~~vsYReVLl~VC~kLKV 155 (238)
+.++..|+.+-.-++|++| ++.+ ..+.+.+.||++||
T Consensus 374 e~~~~dl~~~k~~g~N~iR~~h~~-~~~~fydlcDelGi 411 (1032)
T 2vzs_A 374 TAAADKLKYVLNLGLNTVRLEGHI-EPDEFFDIADDLGV 411 (1032)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCC-CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEECCCCC-CcHHHHHHHHHCCC
Confidence 4456667777777799999 5677 88999999999998
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=22.02 E-value=1.1e+02 Score=23.56 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhc
Q 026466 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYA 179 (238)
Q Consensus 141 sYReVLl~VC~kLKV~ys~klsT~dLEaEIFLhLL~~~s 179 (238)
.|...+..+|.++.-.+......+||-+|.|+.++....
T Consensus 20 ~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~ 58 (239)
T 1rp3_A 20 KYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVD 58 (239)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 366677777777654446677899999999999986543
No 7
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=21.08 E-value=1.1e+02 Score=20.26 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcc---cccchhcC-CCchHHHH--HHHHHhhcCCC
Q 026466 118 ASLESRFLFLAA---DARSTLRG-WRPSYRNV--LLAVRKNLNIP 156 (238)
Q Consensus 118 ~~IE~RFrfLAA---D~~TvLRG-~~vsYReV--Ll~VC~kLKV~ 156 (238)
+.|+++++-+.+ |..=+||+ +.+.|..| +++.|++.|+.
T Consensus 30 ~~L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 30 EMVTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 345555554432 34568898 69999998 47788887763
No 8
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.68 E-value=65 Score=25.51 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=32.7
Q ss_pred cHHHHHHHHhhChHHHHHHHHHhcccCCCCccchhccccCCcchHHHHhhhHHHHHHHHHHHHHHh
Q 026466 60 DPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFL 125 (238)
Q Consensus 60 ~~ELr~~LeLATdEEL~~Lt~ILf~~r~fsPLlkS~~k~~~~Dy~~i~~~~~~R~~~~~~IE~RFr 125 (238)
-.||+..|+-+ +++|.||.+-.---. -+| .++++|-. ..+.|.+|+..+.+++.
T Consensus 69 ~~EL~~~l~si-e~dLeDLe~sI~ivE-~np------~kF~l~~~----Ei~~Rr~fV~~~r~~I~ 122 (130)
T 4dnd_A 69 TNELRNGLRSI-EWDLEDLEETIGIVE-ANP------GKFKLPAG----DLQERKVFVERMREAVQ 122 (130)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH-HCH------HHHCCCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH-hCH------HhcCCCHH----HHHHHHHHHHHHHHHHH
Confidence 45778888766 456666665443211 133 22333322 46789999999998875
No 9
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=18.85 E-value=50 Score=25.18 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHhhcCCC
Q 026466 139 RPSYRNVLLAVRKNLNIP 156 (238)
Q Consensus 139 ~vsYReVLl~VC~kLKV~ 156 (238)
.-+-.|||.++|+|+|++
T Consensus 29 ~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 29 STVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp TSBHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 567889999999999995
No 10
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=18.65 E-value=30 Score=30.90 Aligned_cols=50 Identities=28% Similarity=0.251 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhhcCCCCCCCCChHHH-H-HHHHHHHHhhhcccccCCCCCcccccc
Q 026466 141 SYRNVLLAVRKNLNIPCSSKLSTEDL-E-AEIFLHLLQEYASEESGVFPGSWENSE 194 (238)
Q Consensus 141 sYReVLl~VC~kLKV~ys~klsT~dL-E-aEIFLhLL~~~ss~~~g~~~~~~~~~~ 194 (238)
|-|+.|.++++++.-.-. ...-+ + ++.||++|.+|-.=+++++ +.|++..
T Consensus 2 SLR~~L~~Lr~~~~~~~~---~~~~l~~~a~~lL~llaq~~~l~~Aal-y~~~~~~ 53 (298)
T 4eu0_A 2 SLRSSLLGLRQLLRELPG---DEAPLDALAETVLALLAQYGSLRIAGL-YRVRYDR 53 (298)
T ss_dssp HHHHHHHHHHHHHHHSCS---SSCHHHHTHHHHHHHHHHHHTCSEEEE-EEBCTTS
T ss_pred CHHHHHHHHHHHHhhhcc---ccCcChHHHHHHHHHHHHhcCeeEEEE-EEEECCc
Confidence 568999999999873211 12223 4 7999999999999888888 8888775
Done!