Query 026467
Match_columns 238
No_of_seqs 204 out of 870
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08613 Cyclin: Cyclin; Inte 100.0 1.6E-34 3.4E-39 238.4 11.7 134 54-187 2-149 (149)
2 KOG1674 Cyclin [General functi 100.0 9.8E-30 2.1E-34 222.4 13.8 165 44-208 24-199 (218)
3 KOG1675 Predicted cyclin [Gene 99.6 4E-16 8.7E-21 141.1 5.5 114 93-206 191-305 (343)
4 PF00134 Cyclin_N: Cyclin, N-t 99.3 1.2E-11 2.7E-16 97.0 8.6 93 94-188 33-127 (127)
5 cd00043 CYCLIN Cyclin box fold 98.8 3.3E-08 7.1E-13 71.1 8.4 84 94-180 4-88 (88)
6 smart00385 CYCLIN domain prese 98.6 3.5E-07 7.7E-12 65.1 7.9 81 97-180 1-82 (83)
7 KOG0656 G1/S-specific cyclin D 97.9 5.8E-05 1.2E-09 70.3 9.8 134 57-198 47-189 (335)
8 KOG0653 Cyclin B and related k 97.8 8.7E-05 1.9E-09 70.4 8.5 95 95-191 161-258 (391)
9 TIGR00569 ccl1 cyclin ccl1. Un 97.4 0.0015 3.3E-08 60.2 10.9 105 96-203 60-172 (305)
10 KOG0655 G1/S-specific cyclin E 97.4 0.00044 9.6E-09 64.2 6.9 103 86-189 137-243 (408)
11 COG5024 Cyclin [Cell division 96.9 0.0026 5.6E-08 61.4 7.4 99 94-194 215-316 (440)
12 COG5333 CCL1 Cdk activating ki 96.8 0.0033 7.1E-08 57.7 6.9 92 97-190 50-148 (297)
13 KOG4164 Cyclin ik3-1/CABLES [C 95.9 0.01 2.2E-07 56.4 4.7 108 94-203 384-495 (497)
14 KOG0794 CDK8 kinase-activating 92.8 0.13 2.8E-06 46.0 3.8 95 93-189 42-150 (264)
15 KOG0834 CDK9 kinase-activating 92.4 0.7 1.5E-05 43.2 8.3 109 95-205 42-166 (323)
16 PRK00423 tfb transcription ini 91.2 1.3 2.8E-05 40.8 8.8 95 89-186 213-307 (310)
17 PRK00423 tfb transcription ini 91.0 2.4 5.2E-05 39.1 10.2 92 95-189 125-216 (310)
18 KOG1674 Cyclin [General functi 89.2 0.21 4.5E-06 44.0 1.6 94 112-205 3-107 (218)
19 KOG2496 Cdk activating kinase 87.0 1.8 4E-05 40.1 6.3 95 107-204 73-173 (325)
20 KOG0835 Cyclin L [General func 86.4 7.3 0.00016 36.7 9.9 103 98-202 29-153 (367)
21 PF00382 TFIIB: Transcription 80.7 11 0.00023 26.7 7.0 71 99-172 1-71 (71)
22 PF02984 Cyclin_C: Cyclin, C-t 70.9 11 0.00024 28.2 5.1 85 94-180 2-86 (118)
23 COG1405 SUA7 Transcription ini 64.6 37 0.0008 31.2 8.0 90 89-181 188-277 (285)
24 KOG0654 G2/Mitotic-specific cy 53.3 22 0.00047 33.9 4.6 97 94-192 139-237 (359)
25 COG1405 SUA7 Transcription ini 52.1 1.6E+02 0.0034 27.1 9.9 107 92-201 97-205 (285)
26 PF11357 Spy1: Cell cycle regu 50.9 70 0.0015 26.2 6.6 96 94-196 14-116 (131)
27 PHA02054 hypothetical protein 31.6 1.2E+02 0.0027 23.0 4.8 73 52-124 1-81 (94)
No 1
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=100.00 E-value=1.6e-34 Score=238.43 Aligned_cols=134 Identities=40% Similarity=0.759 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHhccccccccCC----------C-CcccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 026467 54 KILSLIGRLLEKSVQKNEMLLDTIKT----------K-DVTIFHGLRAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDR 122 (238)
Q Consensus 54 ~~l~~la~~Le~~i~~nd~~~~~~~~----------~-~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~llALiYidR 122 (238)
+++..|+.++++++..|+.....++. . ..+.|++..+|+++|.+|+.||+++++|+++|+++|++||+|
T Consensus 2 ~~~~~i~~~l~~~~~~n~~~~~~s~~~~~~~~~~~~~~~~~~F~~~~~p~i~i~~fl~ri~~~~~~s~~~~i~aliYl~R 81 (149)
T PF08613_consen 2 KLVQSIARQLDRLINNNESTAQSSSSSSSPSSPFQQSPKISQFHSQSVPSISIRDFLSRILKYTQCSPECLILALIYLDR 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------T---------T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCchhhhhcccccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 58899999999999999865433211 1 277899999999999999999999999999999999999999
Q ss_pred Hhc---cCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHHHHHHHHhCCCce
Q 026467 123 FLQ---KTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRMEVKFLFSLDFRL 187 (238)
Q Consensus 123 l~~---~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN~LE~~FL~lLdf~L 187 (238)
+.+ .+.+.+++.|+|||+++|+|||+||+||.+|+|++||+|+|++++|||.||++||.+|||+|
T Consensus 82 l~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 82 LRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT--
T ss_pred HHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCCHHHHHHHHHHHHHHCCCcC
Confidence 998 68899999999999999999999999999999999999999999999999999999999997
No 2
>KOG1674 consensus Cyclin [General function prediction only]
Probab=99.96 E-value=9.8e-30 Score=222.44 Aligned_cols=165 Identities=42% Similarity=0.780 Sum_probs=150.3
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHhccccccc---cCCCCcccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHH
Q 026467 44 DLGKGTVGSPKILSLIGRLLEKSVQKNEMLLDT---IKTKDVTIFHGLRAPTISIQQYIDRIFKYGACSPSCFVIAHIYM 120 (238)
Q Consensus 44 ~~~~~~~~~p~~l~~la~~Le~~i~~nd~~~~~---~~~~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~llALiYi 120 (238)
..+.....+|.++..++.++++....|+..... .....++.|++...|+|++++|++||.++++|+++|+++|++|+
T Consensus 24 ~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yleri~k~~~~s~~~lv~al~Yl 103 (218)
T KOG1674|consen 24 PTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYLERIFKYSKCSPECLVLALVYL 103 (218)
T ss_pred cccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHHHHHHHHhcCCchhhhhhhhhh
Confidence 345667789999999999999999999865321 11223899999999999999999999999999999999999999
Q ss_pred HHHhcc-------CCCcccccc-HHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHHHHHHHHhCCCceeecHH
Q 026467 121 DRFLQK-------TDGHLTSLN-VHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRMEVKFLFSLDFRLQVNVE 192 (238)
Q Consensus 121 dRl~~~-------~~~~l~~~n-~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN~LE~~FL~lLdf~L~Vs~e 192 (238)
||+.++ +...+++.| +||++++++++|+||.+|.+|+|.+||++||++.+|||.||++||..+||+|.|+.+
T Consensus 104 dr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~vggl~~~eln~lE~~~l~~~~~~l~i~~~ 183 (218)
T KOG1674|consen 104 DRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKVGGLTTDELNKLELDLLFLLDFRLIISRS 183 (218)
T ss_pred hhhhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHhCCCChHhhhhhhHHHHhhCCeEEEechh
Confidence 999974 678899999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 026467 193 TFHKFCSQLGKEAAEG 208 (238)
Q Consensus 193 ef~~Y~~~L~~~~~~~ 208 (238)
+|..|+..++++...+
T Consensus 184 ~~~~~~~~~~~~~~~~ 199 (218)
T KOG1674|consen 184 EFNLYEDLLEREENLN 199 (218)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998644
No 3
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=99.62 E-value=4e-16 Score=141.12 Aligned_cols=114 Identities=23% Similarity=0.413 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc-CCCHHH
Q 026467 93 ISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG-GVSTAE 171 (238)
Q Consensus 93 isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg-Gis~~E 171 (238)
.-+..|+...+.+.++..+|-++.|+|++|+....+..+.+.||+|..+.++++|+|.|+|..++|-.|+++. .+++.+
T Consensus 191 ~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd~tveD 270 (343)
T KOG1675|consen 191 VRIKKFVRILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKDQSVDD 270 (343)
T ss_pred hheehhhhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhhccHhh
Confidence 3588899999999999999999999999999986666689999999999999999999999999999999995 699999
Q ss_pred HHHHHHHHHHhCCCceeecHHHHHHHHHHHHHHhh
Q 026467 172 MNRMEVKFLFSLDFRLQVNVETFHKFCSQLGKEAA 206 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~Vs~eef~~Y~~~L~~~~~ 206 (238)
||.|||+||.+|+||+.|...+|.+|++.|+..+.
T Consensus 271 mNe~ERqfLelLqfNinvp~svYAKyYfdlr~Lae 305 (343)
T KOG1675|consen 271 MNALERQFLELLQFNINVPSSEYAKYYFDLRCLAE 305 (343)
T ss_pred HHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999998874
No 4
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.29 E-value=1.2e-11 Score=97.04 Aligned_cols=93 Identities=22% Similarity=0.320 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAE 171 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--Gis~~E 171 (238)
.+.+|+..+....++++.++..|+.|+||+..+. .+...+++.+.++|+++|+|+.++...+...|..++ .++.++
T Consensus 33 ~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~--~~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~ 110 (127)
T PF00134_consen 33 IIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKR--PVNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKKD 110 (127)
T ss_dssp HHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS---TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhc--ccccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHH
Confidence 4788999999999999999999999999998764 367889999999999999999999888888888775 479999
Q ss_pred HHHHHHHHHHhCCCcee
Q 026467 172 MNRMEVKFLFSLDFRLQ 188 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~ 188 (238)
+..||+.+|..|+|+|+
T Consensus 111 i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 111 ILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHCCCCcC
Confidence 99999999999999985
No 5
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.80 E-value=3.3e-08 Score=71.09 Aligned_cols=84 Identities=23% Similarity=0.198 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCC-CHHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGV-STAEM 172 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGi-s~~EL 172 (238)
...+|+.++.+..++++++...|..|++|+.....+ ...+.+.+.++|+.+|+|+.++ ..+++.+.+++|. +.+++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~~~~~i 80 (88)
T cd00043 4 TPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSV--LGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYATEEEI 80 (88)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCCCHHHH
Confidence 578999999999999999999999999999875433 4788999999999999999998 8888999999999 99999
Q ss_pred HHHHHHHH
Q 026467 173 NRMEVKFL 180 (238)
Q Consensus 173 N~LE~~FL 180 (238)
..+|.++|
T Consensus 81 ~~~e~~il 88 (88)
T cd00043 81 LRMEKLLL 88 (88)
T ss_pred HHHHHHhC
Confidence 99999875
No 6
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.57 E-value=3.5e-07 Score=65.07 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCC-CHHHHHHH
Q 026467 97 QYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGV-STAEMNRM 175 (238)
Q Consensus 97 ~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGi-s~~ELN~L 175 (238)
+|+.++.+..++++.+..+|..|++|+.....+ ...+.+.+..+|+.+|+|..+.. .++..+.++.|. +.+++..+
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~--~~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~~~~~~i~~~ 77 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKF--LKYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGYFTEEEILRM 77 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc--ccCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCCCCHHHHHHH
Confidence 489999999999999999999999999874333 33789999999999999999876 577888888888 99999999
Q ss_pred HHHHH
Q 026467 176 EVKFL 180 (238)
Q Consensus 176 E~~FL 180 (238)
|+++|
T Consensus 78 ~~~il 82 (83)
T smart00385 78 EKLLL 82 (83)
T ss_pred HHHHh
Confidence 99987
No 7
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=5.8e-05 Score=70.28 Aligned_cols=134 Identities=22% Similarity=0.226 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhccccccccCCCCccccc-CC-CCCc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCc-c
Q 026467 57 SLIGRLLEKSVQKNEMLLDTIKTKDVTIFH-GL-RAPT--ISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGH-L 131 (238)
Q Consensus 57 ~~la~~Le~~i~~nd~~~~~~~~~~~~~F~-~~-~~P~--isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~-l 131 (238)
+.|+++|++--+.+.... ..|. ++ -.|. ----+++.++.+.-+|++.|+.+|+=|+||++....++ -
T Consensus 47 ~~i~~ll~kEe~~~p~~~--------~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~ 118 (335)
T KOG0656|consen 47 RVLANLLEKEEQHNPSLD--------YFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKD 118 (335)
T ss_pred HHHHHHHHHHHHhCCCCc--------hhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCC
Confidence 467777777776654331 0111 11 1122 13468999999999999999999999999999743332 2
Q ss_pred ccccHHHHHHHHHHhhhhhcccCccccccccccc---CCCHHHHHHHHHHHHHhCCCcee-ecHHHHHHHH
Q 026467 132 TSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG---GVSTAEMNRMEVKFLFSLDFRLQ-VNVETFHKFC 198 (238)
Q Consensus 132 ~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg---Gis~~ELN~LE~~FL~lLdf~L~-Vs~eef~~Y~ 198 (238)
.+....-|-++||-||+|+-+-...--..+--.+ -+..+.|-+||+-.|..|+|++. |++-.|-+|.
T Consensus 119 k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~f 189 (335)
T KOG0656|consen 119 KPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHF 189 (335)
T ss_pred chHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHH
Confidence 3344778889999999999877544333332222 26799999999999999999996 6888877775
No 8
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=8.7e-05 Score=70.36 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHH-hhhhhcccCcccccccccc--cCCCHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVM-VAAKFIDDAFFNNAYYARV--GGVSTAE 171 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~-lAsKf~dD~~y~N~~~AkV--gGis~~E 171 (238)
+-+++..++.+++++++++.+|+-+|||+..... +...-..-+-++|+. ||+||-+.....-..+.-+ +.++.++
T Consensus 161 Lvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~--v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~ 238 (391)
T KOG0653|consen 161 LVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVK--VPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREE 238 (391)
T ss_pred HHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhc--ccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHH
Confidence 6789999999999999999999999999997643 344445566678867 9999944334445556655 5689999
Q ss_pred HHHHHHHHHHhCCCceeecH
Q 026467 172 MNRMEVKFLFSLDFRLQVNV 191 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~Vs~ 191 (238)
+-.||+..|..|+|++.+..
T Consensus 239 il~mE~~il~~L~f~l~~p~ 258 (391)
T KOG0653|consen 239 ILRMEKYILNVLEFDLSVPT 258 (391)
T ss_pred HHHHHHHHHhccCeeecCCc
Confidence 99999999999999999954
No 9
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=97.42 E-value=0.0015 Score=60.23 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc-CC---CH
Q 026467 96 QQYIDRIFKYGA--CSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG-GV---ST 169 (238)
Q Consensus 96 ~~yl~rI~~~~~--~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg-Gi---s~ 169 (238)
..++.++....+ ++..+.-.|.+|++|+..+..+ .....+-+.+||+-+|+|+-+-. .+-..+.... +- ..
T Consensus 60 ~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv--~~~~p~~Ia~tclfLA~KvEE~~-~si~~fv~~~~~~~~~~~ 136 (305)
T TIGR00569 60 EKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSV--MEYHPKIIMLTCVFLACKVEEFN-VSIDQFVGNLKETPLKAL 136 (305)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCch--hhcCHHHHHHHHHHHHHhccccC-cCHHHHHhhccCCchhhH
Confidence 345667778888 9999999999999999876443 45678999999999999976543 3334444322 22 35
Q ss_pred HHHHHHHHHHHHhCCCceeec-H-HHHHHHHHHHHH
Q 026467 170 AEMNRMEVKFLFSLDFRLQVN-V-ETFHKFCSQLGK 203 (238)
Q Consensus 170 ~ELN~LE~~FL~lLdf~L~Vs-~-eef~~Y~~~L~~ 203 (238)
.+|-.+|..+|..|+|+|.|. + .-+..|...+..
T Consensus 137 ~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~ 172 (305)
T TIGR00569 137 EQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKT 172 (305)
T ss_pred HHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHH
Confidence 899999999999999999993 2 334456555543
No 10
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.00044 Score=64.24 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=84.9
Q ss_pred cCCCCCcc--cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccc
Q 026467 86 HGLRAPTI--SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYAR 163 (238)
Q Consensus 86 ~~~~~P~i--si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~Ak 163 (238)
|..--|.. =+-+++-.+..-.++-.++|.+|.=|+||+.... ..++..+..-+=++||.||+|+-+-...+-..||-
T Consensus 137 Hpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~-~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAy 215 (408)
T KOG0655|consen 137 HPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQ-VEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAY 215 (408)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhhhhhHHHhhHHHHHHHHHHhhccCccccceee
Confidence 44445554 2678888888888899999999999999998633 44455667777899999999988777778888998
Q ss_pred c--cCCCHHHHHHHHHHHHHhCCCceee
Q 026467 164 V--GGVSTAEMNRMEVKFLFSLDFRLQV 189 (238)
Q Consensus 164 V--gGis~~ELN~LE~~FL~lLdf~L~V 189 (238)
| |-.|-.+|-.||+-.|+.|+|+|.-
T Consensus 216 vTDgAcs~ddIltmE~iilkal~W~l~P 243 (408)
T KOG0655|consen 216 VTDGACSEDDILTMELIILKALKWELSP 243 (408)
T ss_pred eccCccchHHHHHHHHHHHHHhcccccc
Confidence 8 5589999999999999999999963
No 11
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.0026 Score=61.40 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccc--cCCCHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV--GGVSTAE 171 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkV--gGis~~E 171 (238)
.|-+|+..++..+++.|+++.+|.-.|||++..+.+.++- ..-+-++|+.||+||-+=.+-.-+.|+-+ |.++.++
T Consensus 215 ~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l~k--~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~~ 292 (440)
T COG5024 215 ILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEK--YQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDD 292 (440)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccHHH--HHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHHH
Confidence 3788999999999999999999999999999876665442 23445789999999988777777776666 6789999
Q ss_pred HHHHHHHHHHhCCCceeec-HHHH
Q 026467 172 MNRMEVKFLFSLDFRLQVN-VETF 194 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~Vs-~eef 194 (238)
+-.+|+..|..++|++... +--|
T Consensus 293 i~~aE~~ml~~l~f~is~P~P~sF 316 (440)
T COG5024 293 IIRAERYMLEVLDFNISWPSPMSF 316 (440)
T ss_pred HHHHHHHHhhhcccccCCCChHHH
Confidence 9999999999999999874 4444
No 12
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0033 Score=57.70 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcc---c----CcccccccccccCCCH
Q 026467 97 QYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFID---D----AFFNNAYYARVGGVST 169 (238)
Q Consensus 97 ~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~d---D----~~y~N~~~AkVgGis~ 169 (238)
.++.++-.+.+++..++=.|.+|..|+.-+.. +...+.+-+..+++.+|+|+-| | .+-.+.-|++.---+.
T Consensus 50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~s--v~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~sr 127 (297)
T COG5333 50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNS--VEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSSR 127 (297)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcc--cccccHHHHHHhheeeeeecccccchhhHHHHHhhccccccccccH
Confidence 67888999999999999999999999986533 5777899999999999999887 2 1234555888888899
Q ss_pred HHHHHHHHHHHHhCCCceeec
Q 026467 170 AEMNRMEVKFLFSLDFRLQVN 190 (238)
Q Consensus 170 ~ELN~LE~~FL~lLdf~L~Vs 190 (238)
+.+-.+|.+.|+.|+|+++|.
T Consensus 128 ~~Il~~E~~lLEaL~fd~~V~ 148 (297)
T COG5333 128 ERILEYEFELLEALDFDLHVH 148 (297)
T ss_pred HHHHHHHHHHHHHcccceEec
Confidence 999999999999999999994
No 13
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=0.01 Score=56.41 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccc----cccCCCH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYA----RVGGVST 169 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~A----kVgGis~ 169 (238)
||..=+.+|-.-+++...+.-+|.+|.+++.-+ -.++..|-+-..-+|++||+|+-|=.--.-+.+- ..+.++.
T Consensus 384 SlKREMr~l~~d~~id~~TVa~AyVYFEKliLk--glisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~nr 461 (497)
T KOG4164|consen 384 SLKREMRELGEDCGIDVVTVAMAYVYFEKLILK--GLISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRLNR 461 (497)
T ss_pred HHHHHHHHhhhccCccceeehhHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccH
Confidence 578889999999999999999999999999854 2346667777778999999998832322333322 2467889
Q ss_pred HHHHHHHHHHHHhCCCceeecHHHHHHHHHHHHH
Q 026467 170 AEMNRMEVKFLFSLDFRLQVNVETFHKFCSQLGK 203 (238)
Q Consensus 170 ~ELN~LE~~FL~lLdf~L~Vs~eef~~Y~~~L~~ 203 (238)
+||-..|.-.|..|+|.|+++..|..-.+..|..
T Consensus 462 rdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~~ 495 (497)
T KOG4164|consen 462 RDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQQ 495 (497)
T ss_pred HhhhhhhhhHHHhhhhhccCChhhcchHHHHHhh
Confidence 9999999999999999999999888777666653
No 14
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=92.78 E-value=0.13 Score=46.02 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-c-------cccc-----
Q 026467 93 ISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-F-------FNNA----- 159 (238)
Q Consensus 93 isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~-~-------y~N~----- 159 (238)
|-..+++..+..+.++-..++-.|.+|+.|+.-+.+ +...+..-+..||+-+|+|.-+=- . +.+.
T Consensus 42 i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S--~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f 119 (264)
T KOG0794|consen 42 IFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKS--LKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRF 119 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhc
Confidence 344577888888888889999999999999987644 456678889999999999987652 1 1111
Q ss_pred -ccccccCCCHHHHHHHHHHHHHhCCCceee
Q 026467 160 -YYARVGGVSTAEMNRMEVKFLFSLDFRLQV 189 (238)
Q Consensus 160 -~~AkVgGis~~ELN~LE~~FL~lLdf~L~V 189 (238)
+|.+-.....+.+-.+|-..|..||+-|.|
T Consensus 120 ~~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIV 150 (264)
T KOG0794|consen 120 SYWPEKFPYERKDILEMEFYLLEALDCYLIV 150 (264)
T ss_pred ccchhhcCCCcCcchhhhhhHHhhhceeEEE
Confidence 366666678889999999999999999998
No 15
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=92.37 E-value=0.7 Score=43.19 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-------cccccccccc---
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-------FFNNAYYARV--- 164 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~-------~y~N~~~AkV--- 164 (238)
-..||..+-.+.+++.-++-.|.+|..|+.-...+. ....+-+-.+|+.+|.|.-|-- .-++.++...
T Consensus 42 ~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~--~~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~~~~~ 119 (323)
T KOG0834|consen 42 GAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFK--KFDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNPKDLE 119 (323)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccc--cCcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCccccc
Confidence 457999999999999999999999999998654443 3334567788899999975432 1122222221
Q ss_pred ----cCCCHHHHHHHHHHHHHhCCCceeecH--HHHHHHHHHHHHHh
Q 026467 165 ----GGVSTAEMNRMEVKFLFSLDFRLQVNV--ETFHKFCSQLGKEA 205 (238)
Q Consensus 165 ----gGis~~ELN~LE~~FL~lLdf~L~Vs~--eef~~Y~~~L~~~~ 205 (238)
.-=..+++-.+|+-.|..|+|++.|.- .-..+|+..+....
T Consensus 120 ~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~ 166 (323)
T KOG0834|consen 120 LEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADE 166 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhh
Confidence 111368899999999999999999954 44557777766654
No 16
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=91.22 E-value=1.3 Score=40.76 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=74.3
Q ss_pred CCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCC
Q 026467 89 RAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVS 168 (238)
Q Consensus 89 ~~P~isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis 168 (238)
..|.++-.+|+.|+....+++..+.-.|...+.+.... ++ ....++.-+..+|+-+|++.... .-+.+..|++.|++
T Consensus 213 ~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~-~l-~~Gr~P~sIAAAaIYlA~~~~g~-~~t~keIa~v~~Vs 289 (310)
T PRK00423 213 KLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEK-GL-TSGKGPTGLAAAAIYIASLLLGE-RRTQREVAEVAGVT 289 (310)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Cc-ccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHcCCC
Confidence 46677889999999999999999888887666666543 32 45678889999999999997653 35677888999999
Q ss_pred HHHHHHHHHHHHHhCCCc
Q 026467 169 TAEMNRMEVKFLFSLDFR 186 (238)
Q Consensus 169 ~~ELN~LE~~FL~lLdf~ 186 (238)
..++..-=++++..++..
T Consensus 290 ~~tI~~~ykel~~~l~~~ 307 (310)
T PRK00423 290 EVTVRNRYKELAEKLDIK 307 (310)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 999887767777666543
No 17
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=90.98 E-value=2.4 Score=39.05 Aligned_cols=92 Identities=17% Similarity=0.074 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNR 174 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN~ 174 (238)
-...|.++....+++..+.=-|..+..++.....+ ...+..-++.+|+-+|.|. ++...+-+.++.+.+++.+|+..
T Consensus 125 a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~--rgrs~~~i~AAclYiACR~-~~~prtl~eI~~~~~v~~k~i~~ 201 (310)
T PRK00423 125 ALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLI--RGRSIEGVVAAALYAACRR-CKVPRTLDEIAEVSRVSRKEIGR 201 (310)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--cCCCHHHHHHHHHHHHHHH-cCCCcCHHHHHHHhCCCHHHHHH
Confidence 34567888999999999988898888888775333 4456788889999999996 66677888899999999999999
Q ss_pred HHHHHHHhCCCceee
Q 026467 175 MEVKFLFSLDFRLQV 189 (238)
Q Consensus 175 LE~~FL~lLdf~L~V 189 (238)
.++.++..|++++.+
T Consensus 202 ~~~~l~k~L~~~~~~ 216 (310)
T PRK00423 202 CYRFLLRELNLKLPP 216 (310)
T ss_pred HHHHHHHHhCCCCCC
Confidence 999999999988765
No 18
>KOG1674 consensus Cyclin [General function prediction only]
Probab=89.19 E-value=0.21 Score=44.02 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=72.2
Q ss_pred HHHHHHHHHH--HHhccCC--CccccccHHHHHHHHHHhhhhhcccCcc-----cccccccc-cC-CCHHHHHHHHHHHH
Q 026467 112 CFVIAHIYMD--RFLQKTD--GHLTSLNVHRLLITSVMVAAKFIDDAFF-----NNAYYARV-GG-VSTAEMNRMEVKFL 180 (238)
Q Consensus 112 ~~llALiYid--Rl~~~~~--~~l~~~n~hRL~ltal~lAsKf~dD~~y-----~N~~~AkV-gG-is~~ELN~LE~~FL 180 (238)
+.+++..|++ |+..... ......+.++.++++++.+.|...|..- +++.|+.- .| ......|.+|+++|
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yl 82 (218)
T KOG1674|consen 3 TLMTMSVYINPDKLRLNLPDNPTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYL 82 (218)
T ss_pred hhhHhHhhcCccchhhccCcccccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHH
Confidence 5677788888 7776422 2344567899999999999999988765 68888853 34 47889999999999
Q ss_pred HhCCCceeecHHHHHHHHHHHHHHh
Q 026467 181 FSLDFRLQVNVETFHKFCSQLGKEA 205 (238)
Q Consensus 181 ~lLdf~L~Vs~eef~~Y~~~L~~~~ 205 (238)
..++|...+++++|-.=+.-+.+..
T Consensus 83 eri~k~~~~s~~~lv~al~Yldr~~ 107 (218)
T KOG1674|consen 83 ERIFKYSKCSPECLVLALVYLDRFV 107 (218)
T ss_pred HHHHHHhcCCchhhhhhhhhhhhhh
Confidence 9999999999999875444444443
No 19
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=86.96 E-value=1.8 Score=40.15 Aligned_cols=95 Identities=16% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccC----CCHHHHHHHHHHHHHh
Q 026467 107 ACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGG----VSTAEMNRMEVKFLFS 182 (238)
Q Consensus 107 ~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgG----is~~ELN~LE~~FL~l 182 (238)
.+++++.-.|+.|.-|+.-... +....+.-++.||+-+|.|. ++.+.+-..|++-.. =....+-..|...|..
T Consensus 73 ~lp~~Vv~TA~~fFkRffL~ns--vme~~pk~I~~tc~flA~Ki-eef~ISieqFvkn~~~~~~k~~e~vLk~E~~llqs 149 (325)
T KOG2496|consen 73 NLPTSVVSTAIEFFKRFFLENS--VMEYSPKIIMATCFFLACKI-EEFYISIEQFVKNMNGRKWKTHEIVLKYEFLLLQS 149 (325)
T ss_pred CCchHHHHHHHHHHHHHHHhcc--hhhcChHHHHHHHHHHHhhh-HhheecHHHHHhhccCcccccHHHHHhchHHHHHh
Confidence 5889999999999999874322 23456678889999999995 455656666655322 3578888999999999
Q ss_pred CCCceeec--HHHHHHHHHHHHHH
Q 026467 183 LDFRLQVN--VETFHKFCSQLGKE 204 (238)
Q Consensus 183 Ldf~L~Vs--~eef~~Y~~~L~~~ 204 (238)
|+|+|.|- -.-++-|+..++..
T Consensus 150 L~f~L~vh~PyRPleGFl~D~kt~ 173 (325)
T KOG2496|consen 150 LKFSLTVHNPYRPLEGFLLDMKTR 173 (325)
T ss_pred hhhhheecCCCCchHHHHHHHHHH
Confidence 99999993 34556666666655
No 20
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=86.38 E-value=7.3 Score=36.70 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCc-----cc----------cccc-
Q 026467 98 YIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAF-----FN----------NAYY- 161 (238)
Q Consensus 98 yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~-----y~----------N~~~- 161 (238)
+|..----.+++..|...++|++.|++....+. -.+..-+..+|+.||+|.-+.-. ++ +...
T Consensus 29 ~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v--~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~~~ 106 (367)
T KOG0835|consen 29 LIQEAGILLNLPQVAMATGQVLFQRFCYSKSFV--RHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEAAE 106 (367)
T ss_pred HHHhhhHhhcCcHHHHHHHHHHHHHHHhccccc--cccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccCcc
Confidence 333333345689999999999999998653332 23566789999999999875421 11 1110
Q ss_pred ----ccccCCCHHHHHHHHHHHHHhCCCceeec--HHHHHHHHHHHH
Q 026467 162 ----ARVGGVSTAEMNRMEVKFLFSLDFRLQVN--VETFHKFCSQLG 202 (238)
Q Consensus 162 ----AkVgGis~~ELN~LE~~FL~lLdf~L~Vs--~eef~~Y~~~L~ 202 (238)
++-.-=-....-..|++.|..|+|.++|. -..+..|+..|+
T Consensus 107 ~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~ 153 (367)
T KOG0835|consen 107 HLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQ 153 (367)
T ss_pred hhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhc
Confidence 10000013456678999999999999994 356667766543
No 21
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=80.67 E-value=11 Score=26.68 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=53.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHH
Q 026467 99 IDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEM 172 (238)
Q Consensus 99 l~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~EL 172 (238)
+.|+....++++.+.=.|.-+..+..... + ....+..-+..+|+-+|.+.. +...+-+..+++.||+..++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~-~-~~Gr~~~~iaAA~iY~acr~~-~~~~t~~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERG-L-LKGRSPESIAAACIYLACRLN-GVPRTLKEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTT-T-STTS-HHHHHHHHHHHHHHHT-TSSSSHHHHHHHCTSSHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcC-C-cccCCHHHHHHHHHHHHHHHc-CCCcCHHHHHHHhCCCCCcC
Confidence 56888999999998888888877776543 2 344567889999999999866 55567788888999988775
No 22
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=70.92 E-value=11 Score=28.25 Aligned_cols=85 Identities=8% Similarity=0.122 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 173 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN 173 (238)
+..+|+.++.+..+.+....-+|.+.++--..... .-....-.+-.+|+.+|.+.++.....+.......|++.+++.
T Consensus 2 Tp~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~--fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~~~l~ 79 (118)
T PF02984_consen 2 TPYDFLRRFLKISNADQEVRNLARYLLELSLLDYE--FLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGYDKEDLK 79 (118)
T ss_dssp -HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHH--HTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS-HHHHH
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhcc--ccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCCCHHHHH
Confidence 45789999977777777788888777775443322 2334556788899999999877433444444556677666655
Q ss_pred HHHHHHH
Q 026467 174 RMEVKFL 180 (238)
Q Consensus 174 ~LE~~FL 180 (238)
..=..+.
T Consensus 80 ~c~~~i~ 86 (118)
T PF02984_consen 80 ECIELIQ 86 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5433333
No 23
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=64.59 E-value=37 Score=31.21 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=66.3
Q ss_pred CCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCC
Q 026467 89 RAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVS 168 (238)
Q Consensus 89 ~~P~isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis 168 (238)
..|++...+|+.|+....+++.++--.|.-.+.+.... +.. .....--+-.+|+.+|++..+ ..-+.+.-|+|.|++
T Consensus 188 ~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~-g~~-~Gk~P~glAaaaiy~as~l~~-~~~tq~eva~v~~vt 264 (285)
T COG1405 188 KIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRA-GLT-AGKSPAGLAAAAIYLASLLLG-ERRTQKEVAKVAGVT 264 (285)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-Ccc-cCCCchhHHHHHHHHHHHHhC-CchHHHHHHHHhCCe
Confidence 35557899999999999999999998887777777653 222 244566788899999999877 445677788889988
Q ss_pred HHHHHHHHHHHHH
Q 026467 169 TAEMNRMEVKFLF 181 (238)
Q Consensus 169 ~~ELN~LE~~FL~ 181 (238)
...|..-=.++..
T Consensus 265 evTIrnrykel~~ 277 (285)
T COG1405 265 EVTIRNRYKELAD 277 (285)
T ss_pred eeHHHHHHHHHHH
Confidence 6666544333333
No 24
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=53.27 E-value=22 Score=33.87 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccc--cCCCHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV--GGVSTAE 171 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkV--gGis~~E 171 (238)
.+.+++-.+.+-.....+++-++..|++|+... ..++....|++=.+|+.+|+||..-..-.-..|..+ .-+.-.+
T Consensus 139 ilvdwlvevsee~r~~~e~l~ls~~~~drfl~~--~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~q 216 (359)
T KOG0654|consen 139 ILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSY--KEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQ 216 (359)
T ss_pred hhhhhhhHHHHHHHhhhhheeecHHHHHHHhcc--CccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHH
Confidence 578888888888899999999999999999865 334555567777899999999987654322222222 2356789
Q ss_pred HHHHHHHHHHhCCCceeecHH
Q 026467 172 MNRMEVKFLFSLDFRLQVNVE 192 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~Vs~e 192 (238)
+-.||...|..+.|.+.+...
T Consensus 217 v~~~~~~il~~l~~~~~~pt~ 237 (359)
T KOG0654|consen 217 VLRMEIDILNALTFELVRPTS 237 (359)
T ss_pred HHHHHHHHHHHhHHHHhCchH
Confidence 999999999999999988653
No 25
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=52.14 E-value=1.6e+02 Score=27.11 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHH
Q 026467 92 TISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAE 171 (238)
Q Consensus 92 ~isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~E 171 (238)
-+....++.++....+++..+---|....-+...+.-. ...++.-++.+|+-+|.+ .....-+-...+++.+++.++
T Consensus 97 l~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~--rGRsie~v~AA~iY~acR-~~~~prtl~eIa~a~~V~~ke 173 (285)
T COG1405 97 LITALEELERIASALGLPESVRETAARIYRKAVDKGLL--RGRSIESVAAACIYAACR-INGVPRTLDEIAKALGVSKKE 173 (285)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCC--cCCcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCHHH
Confidence 34577889999999999999888776555555544222 334555666666666666 566777788889999999999
Q ss_pred HHHHHHHHHHhCCCcee-ecHHHHH-HHHHHH
Q 026467 172 MNRMEVKFLFSLDFRLQ-VNVETFH-KFCSQL 201 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~-Vs~eef~-~Y~~~L 201 (238)
+.+..+.....|+=.+- +++.+|- +|+..|
T Consensus 174 i~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L 205 (285)
T COG1405 174 IGRTYRLLVRELKLKIPPVDPSDYIPRFASKL 205 (285)
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence 99999988777765555 4555544 444433
No 26
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=50.89 E-value=70 Score=26.23 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHH--HHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCc-ccccccccccCCC--
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAH--IYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAF-FNNAYYARVGGVS-- 168 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llAL--iYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~-y~N~~~AkVgGis-- 168 (238)
-|++||.- =+..++|.- +++|+ +|..|.- +.....+- --|..||=+|+-+-+|.. .+..-+.=+.|-.
T Consensus 14 ~I~~FL~~-D~~~~~sDK-YLLAmV~~YF~Rag----l~~~~Y~r-i~FFlALYLAndmEED~~~~K~~If~f~~G~~w~ 86 (131)
T PF11357_consen 14 VIQKFLAW-DKCLRVSDK-YLLAMVIAYFSRAG----LFSWQYQR-IHFFLALYLANDMEEDDEEPKYEIFPFLYGKNWR 86 (131)
T ss_pred HHHHHHHh-CcchhhhhH-HHHHHHHHHHHhcc----cchhhcch-HHHHHHHHHhhHHHhccchHHHHHHHHHHCcchH
Confidence 35666553 122234433 44444 5666653 32232222 235677999999998874 4444444444543
Q ss_pred --HHHHHHHHHHHHHhCCCceeecHHHHHH
Q 026467 169 --TAEMNRMEVKFLFSLDFRLQVNVETFHK 196 (238)
Q Consensus 169 --~~ELN~LE~~FL~lLdf~L~Vs~eef~~ 196 (238)
......+-.+|...++|+..||.++.+.
T Consensus 87 ~~~~~F~klr~~~~~~m~~Ra~Vsre~cEE 116 (131)
T PF11357_consen 87 SQIPQFHKLRDQFWRRMDWRAWVSREECEE 116 (131)
T ss_pred HHhHHHHHHHHHHHHHcCCceeeCHHHHHH
Confidence 5678889999999999999999986443
No 27
>PHA02054 hypothetical protein
Probab=31.62 E-value=1.2e+02 Score=22.95 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHHHH--Hhcccccccc-CCCC-cccccCCCCCcc----cHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 026467 52 SPKILSLIGRLLEKSV--QKNEMLLDTI-KTKD-VTIFHGLRAPTI----SIQQYIDRIFKYGACSPSCFVIAHIYMDRF 123 (238)
Q Consensus 52 ~p~~l~~la~~Le~~i--~~nd~~~~~~-~~~~-~~~F~~~~~P~i----si~~yl~rI~~~~~~s~~~~llALiYidRl 123 (238)
+|+++..+|-++..+- +.|.+...-. --.+ .-++-.+-.|++ .+.+++..-....+|+..||++...=-.-+
T Consensus 1 m~k~~~~ial~~a~~h~v~a~pe~Gsydeym~GAmIVY~N~IvpS~dnSv~Flehl~~kw~svkCsd~Cfq~Gy~eAk~F 80 (94)
T PHA02054 1 MPKIIAAVALLVATVHLVSANPEVGSYDEFMQGAMIVYTNDIVHSKDNSVQFLEYLDTKWGSVGCSDTCFQLGYQEAKLF 80 (94)
T ss_pred CchhHHHHHHHHHHhheeecCCCCCCHHHHhCccEEEEecccccccccHHHHHHHHHHHHhhcchhHHHHHHhhHHHHHH
Confidence 4677777777665442 2221110000 0001 223444556766 255666666888999999999985444444
Q ss_pred h
Q 026467 124 L 124 (238)
Q Consensus 124 ~ 124 (238)
.
T Consensus 81 v 81 (94)
T PHA02054 81 V 81 (94)
T ss_pred h
Confidence 4
Done!