Query 026467
Match_columns 238
No_of_seqs 204 out of 870
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:15:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 5.3E-39 1.8E-43 289.2 12.9 151 52-202 32-185 (293)
2 1f5q_B Gamma herpesvirus cycli 98.7 5.8E-08 2E-12 85.4 10.9 103 94-198 51-156 (252)
3 1g3n_C V-cyclin; cyclin-depend 98.7 9.8E-08 3.3E-12 83.4 11.4 102 95-198 54-158 (257)
4 3g33_B CCND3 protein; Ser/Thr 98.7 6.8E-08 2.3E-12 87.0 9.6 101 95-197 74-177 (306)
5 2f2c_A Cyclin homolog, V-cycli 98.7 8.8E-08 3E-12 83.6 9.6 100 95-196 55-157 (254)
6 2cch_B Cyclin A2, cyclin-A; co 98.6 1.2E-07 4.3E-12 82.9 10.4 101 95-197 42-145 (260)
7 2w96_A G1/S-specific cyclin-D1 98.6 1.6E-07 5.6E-12 82.6 11.2 100 95-196 60-162 (271)
8 2b9r_A Human cyclin B1; cell c 98.6 2.4E-07 8.1E-12 81.6 12.0 101 95-197 41-144 (269)
9 1w98_B Cyclin E, G1/S-specific 98.6 2.6E-07 8.8E-12 82.1 11.7 104 95-200 53-160 (283)
10 2i53_A Cyclin K; cell cycle, t 98.3 6.6E-06 2.3E-10 71.3 11.5 98 95-195 44-155 (258)
11 1zp2_A RNA polymerase II holoe 98.2 7.5E-06 2.6E-10 70.4 10.7 98 94-194 30-137 (235)
12 2ivx_A Cyclin-T2; transcriptio 98.2 1.2E-05 4.3E-10 69.7 11.6 98 95-195 34-150 (257)
13 3rgf_B Cyclin-C; protein kinas 98.1 2.6E-05 8.7E-10 69.2 11.3 105 95-201 46-168 (285)
14 2pk2_A Cyclin-T1, protein TAT; 98.0 8.5E-06 2.9E-10 74.9 6.2 93 95-190 41-151 (358)
15 1jkw_A Cyclin H; cell cycle, c 97.9 0.00014 4.9E-09 65.6 13.2 103 97-202 62-175 (323)
16 1c9b_A General transcription f 97.7 0.00025 8.5E-09 59.5 11.1 104 95-201 8-113 (207)
17 1ais_B TFB TFIIB, protein (tra 97.2 0.0014 4.9E-08 54.4 9.4 105 94-201 11-119 (200)
18 1ais_B TFB TFIIB, protein (tra 93.1 0.28 9.6E-06 40.3 7.6 94 90-186 101-196 (200)
19 3k7a_M Transcription initiatio 92.8 0.12 4.1E-06 46.8 5.2 88 94-184 128-215 (345)
20 1c9b_A General transcription f 90.9 0.71 2.4E-05 38.0 7.6 86 91-179 98-183 (207)
21 2i53_A Cyclin K; cell cycle, t 81.8 11 0.00038 31.7 10.2 89 94-184 150-250 (258)
22 3rgf_B Cyclin-C; protein kinas 80.6 4.9 0.00017 34.9 7.7 96 95-195 157-253 (285)
23 2ivx_A Cyclin-T2; transcriptio 80.2 16 0.00055 30.7 10.6 89 94-183 145-238 (257)
24 4bbr_M Transcription initiatio 78.6 6.7 0.00023 35.3 8.1 90 94-186 128-217 (345)
25 2pk2_A Cyclin-T1, protein TAT; 74.0 9.1 0.00031 34.5 7.7 90 94-184 152-246 (358)
26 1zp2_A RNA polymerase II holoe 69.5 8.4 0.00029 32.2 6.0 84 94-182 133-217 (235)
27 2f2c_A Cyclin homolog, V-cycli 65.3 13 0.00044 31.5 6.3 87 94-182 151-245 (254)
28 3k7a_M Transcription initiatio 64.9 1.3 4.6E-05 39.8 0.0 89 90-181 230-318 (345)
29 2b9r_A Human cyclin B1; cell c 63.8 11 0.00038 32.2 5.7 83 94-179 137-219 (269)
30 4bbr_M Transcription initiatio 57.1 2.2 7.6E-05 38.5 0.0 92 90-184 230-321 (345)
31 2cch_B Cyclin A2, cyclin-A; co 56.9 29 0.00099 29.3 7.1 86 94-181 138-224 (260)
32 3g33_B CCND3 protein; Ser/Thr 51.4 25 0.00087 30.7 5.9 87 94-182 170-264 (306)
33 1g3n_C V-cyclin; cyclin-depend 49.1 49 0.0017 27.8 7.3 87 94-182 150-245 (257)
34 2w96_A G1/S-specific cyclin-D1 46.6 72 0.0025 26.9 8.0 87 94-182 156-254 (271)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=5.3e-39 Score=289.23 Aligned_cols=151 Identities=29% Similarity=0.407 Sum_probs=137.7
Q ss_pred cchHHHHHHHHHHHHHHhccccccccCC--CCcccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhc-cCC
Q 026467 52 SPKILSLIGRLLEKSVQKNEMLLDTIKT--KDVTIFHGLRAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQ-KTD 128 (238)
Q Consensus 52 ~p~~l~~la~~Le~~i~~nd~~~~~~~~--~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~llALiYidRl~~-~~~ 128 (238)
..+++.+||.+|+++|+.||..+..... ..++.||++.+|+|+|++|+.||+++++|+++|+++|++||+|+.. .++
T Consensus 32 ~~dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~ 111 (293)
T 2pmi_B 32 RTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPD 111 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCC
Confidence 4579999999999999999987543221 2388999999999999999999999999999999999999999997 588
Q ss_pred CccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHHHHHHHHhCCCceeecHHHHHHHHHHHH
Q 026467 129 GHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRMEVKFLFSLDFRLQVNVETFHKFCSQLG 202 (238)
Q Consensus 129 ~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN~LE~~FL~lLdf~L~Vs~eef~~Y~~~L~ 202 (238)
+.+++.|||||+++|+|||+||+||.+|+|++||+|||++++|||.||++||.+|||+|+|+.++|..|+.++.
T Consensus 112 ~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 112 FTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQK 185 (293)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTHHHHHHHHSC
T ss_pred CccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887653
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.73 E-value=5.8e-08 Score=85.35 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccc--cCCCHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV--GGVSTAE 171 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkV--gGis~~E 171 (238)
.+-+|+..+....+++++++.+|..|+||+..... +.....+-+-++|+.||+|+-+-...+-+.+..+ +.++.+|
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~--v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR--IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 37789999999999999999999999999997643 4556788899999999999988766666666655 4589999
Q ss_pred HHHHHHHHHHhCCCceee-cHHHHHHHH
Q 026467 172 MNRMEVKFLFSLDFRLQV-NVETFHKFC 198 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~V-s~eef~~Y~ 198 (238)
+-+||+..|..|+|+|.+ ++-.|-.++
T Consensus 129 i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 999999999999999987 666666544
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.70 E-value=9.8e-08 Score=83.40 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 172 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--Gis~~EL 172 (238)
+.+|+..+....+++++++.+|..|+||+..... +.....+-+-++|+.+|+|+-+-...+-+.+..++ .++.+|+
T Consensus 54 lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 54 LGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHH
Confidence 6789999999999999999999999999997643 45567888999999999999877666667777774 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHHH
Q 026467 173 NRMEVKFLFSLDFRLQV-NVETFHKFC 198 (238)
Q Consensus 173 N~LE~~FL~lLdf~L~V-s~eef~~Y~ 198 (238)
.+||+..|..|+|+|.+ ++..|-.++
T Consensus 132 ~~mE~~iL~~L~~~l~~~tp~~fl~~~ 158 (257)
T 1g3n_C 132 IDQEKELLEKLAWRTEAVLATDVTSFL 158 (257)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 99999999999999987 666665443
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.67 E-value=6.8e-08 Score=86.97 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccC--CCHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGG--VSTAEM 172 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgG--is~~EL 172 (238)
+.+|+..+....+++++++.+|..|+||+..+.. +.....+-+-++|+.||+|+-+-...+.+.+..+.+ ++.+|+
T Consensus 74 lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~--v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i 151 (306)
T 3g33_B 74 LAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQL 151 (306)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHH
Confidence 6789999999999999999999999999997643 466788999999999999998876667777776643 799999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHH
Q 026467 173 NRMEVKFLFSLDFRLQV-NVETFHKF 197 (238)
Q Consensus 173 N~LE~~FL~lLdf~L~V-s~eef~~Y 197 (238)
.+||+..|..|+|+|.+ ++-.|-.+
T Consensus 152 ~~mE~~IL~~L~f~l~~~tp~~fl~~ 177 (306)
T 3g33_B 152 RDWEVLVLGKLKWDLAAVIAHDFLAF 177 (306)
T ss_dssp HHHHHHHHHHTTTCCCCCCGGGGHHH
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999987 44444433
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.66 E-value=8.8e-08 Score=83.56 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 172 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--Gis~~EL 172 (238)
+.+|+..+....+++++++.+|..|+||+..... +.....+-+-++|+.+|+|+-+-...+-+.+..++ .++.+|+
T Consensus 55 lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 55 LLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC--cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 6789999999999999999999999999997643 45567889999999999999887776777777774 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHH
Q 026467 173 NRMEVKFLFSLDFRLQV-NVETFHK 196 (238)
Q Consensus 173 N~LE~~FL~lLdf~L~V-s~eef~~ 196 (238)
-+||+..|..|+|+|.+ ++..|-.
T Consensus 133 ~~mE~~IL~~L~~~l~~~tp~~fl~ 157 (254)
T 2f2c_A 133 INQEKDILEALKWDTEAVLATDFLI 157 (254)
T ss_dssp HHHHHHHHHHTTTCCCCCCGGGSHH
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHH
Confidence 99999999999999986 4555444
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.65 E-value=1.2e-07 Score=82.87 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 172 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--Gis~~EL 172 (238)
+.+|+..+....+++++++.+|..|+||+..... +...+.+-+.++|+.+|+|+-+....+-+.+..++ .++.+|+
T Consensus 42 lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i 119 (260)
T 2cch_B 42 LVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQV 119 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCC--CCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHH
Confidence 6789999999999999999999999999998644 35567888999999999999887666767777665 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHH
Q 026467 173 NRMEVKFLFSLDFRLQV-NVETFHKF 197 (238)
Q Consensus 173 N~LE~~FL~lLdf~L~V-s~eef~~Y 197 (238)
.+||+..|..|+|++.+ ++..|-.+
T Consensus 120 ~~mE~~iL~~L~~~l~~~tp~~fl~~ 145 (260)
T 2cch_B 120 LRMEHLVLKVLTFDLAAPTVNQFLTQ 145 (260)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999987 55555433
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.65 E-value=1.6e-07 Score=82.57 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 172 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--Gis~~EL 172 (238)
+.+|+..+....+++++++.+|..|+||+..... +...+.+-+.++|+.+|+|+-+-...+-+.++.++ .++.+|+
T Consensus 60 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 60 VATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP--VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCC--cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHH
Confidence 6788999999999999999999999999997644 35567899999999999999876555666666664 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHH
Q 026467 173 NRMEVKFLFSLDFRLQV-NVETFHK 196 (238)
Q Consensus 173 N~LE~~FL~lLdf~L~V-s~eef~~ 196 (238)
.+||+..|..|+|+|.+ ++..|-.
T Consensus 138 ~~mE~~IL~~L~~~l~~~tp~~fl~ 162 (271)
T 2w96_A 138 LQMELLLVNKLKWNLAAMTPHDFIE 162 (271)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCccCCCCHHHHHH
Confidence 99999999999999987 5555553
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.64 E-value=2.4e-07 Score=81.63 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 172 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--Gis~~EL 172 (238)
+.+|+..+....+++++++.+|..|+||+..... +...+.+-+.++|+.+|+|+-+-...+-+.+..++ .++.+|+
T Consensus 41 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 41 LIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHH
Confidence 6788999999999999999999999999998644 45668899999999999999877666666777765 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHH
Q 026467 173 NRMEVKFLFSLDFRLQV-NVETFHKF 197 (238)
Q Consensus 173 N~LE~~FL~lLdf~L~V-s~eef~~Y 197 (238)
.+||+..|..|+|+|.+ ++..|-..
T Consensus 119 ~~mE~~IL~~L~f~l~~~tp~~fl~~ 144 (269)
T 2b9r_A 119 RQMEMKILRALNFGLGRPLPLHFLRR 144 (269)
T ss_dssp HHHHHHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999986 56555443
No 9
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.62 E-value=2.6e-07 Score=82.13 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhcc-CCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQK-TDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAE 171 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~-~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--Gis~~E 171 (238)
+.+|+..+....+++++++.+|..|+||+... .. +...+.+-+.++|+.+|+|+-+-...+.+.+..++ .++.+|
T Consensus 53 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 53 LLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN--VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 67889999999999999999999999999975 33 35678899999999999999887666677777775 489999
Q ss_pred HHHHHHHHHHhCCCceee-cHHHHHHHHHH
Q 026467 172 MNRMEVKFLFSLDFRLQV-NVETFHKFCSQ 200 (238)
Q Consensus 172 LN~LE~~FL~lLdf~L~V-s~eef~~Y~~~ 200 (238)
+.+||+..|..|+|+|.+ ++..|-.++..
T Consensus 131 i~~mE~~IL~~L~~~l~~~tp~~fL~~f~~ 160 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSPLTIVSWLNVYMQ 160 (283)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHHHH
Confidence 999999999999999986 66666655443
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.27 E-value=6.6e-06 Score=71.31 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccc-----------
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYAR----------- 163 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~Ak----------- 163 (238)
..+++.++....+++++++-.|..|+||+..+..+ ...+.+-+.++|+.+|+|+-+ ...+-+.+..
T Consensus 44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~~~ 120 (258)
T 2i53_A 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF--KQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQF 120 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCh--hhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchhhh
Confidence 45789999999999999999999999999876444 456788889999999999876 3333333332
Q ss_pred --ccCCCHHHHHHHHHHHHHhCCCceee-cHHHHH
Q 026467 164 --VGGVSTAEMNRMEVKFLFSLDFRLQV-NVETFH 195 (238)
Q Consensus 164 --VgGis~~ELN~LE~~FL~lLdf~L~V-s~eef~ 195 (238)
.+.-+.+++-.||+.+|..|+|+|.+ ++..|-
T Consensus 121 ~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl 155 (258)
T 2i53_A 121 GQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155 (258)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHH
Confidence 22335789999999999999999987 455444
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.22 E-value=7.5e-06 Score=70.36 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCcccc-ccHHHHHHHHHHhhhhhcccCccccccccccc-------
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTS-LNVHRLLITSVMVAAKFIDDAFFNNAYYARVG------- 165 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~-~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg------- 165 (238)
...+++.++....+++++++-.|..|++|+..+..+ .. .+.+-+.++||.+|+|+-+ ...+-+.++.+.
T Consensus 30 ~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~--~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNE--EKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCS--CCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccch
Confidence 456789999999999999999999999999876444 34 6788999999999999876 444444454443
Q ss_pred -CCCHHHHHHHHHHHHHhCCCceee-cHHHH
Q 026467 166 -GVSTAEMNRMEVKFLFSLDFRLQV-NVETF 194 (238)
Q Consensus 166 -Gis~~ELN~LE~~FL~lLdf~L~V-s~eef 194 (238)
.++.+++-.+|+.+|..|+|++.+ ++..|
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~ 137 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTS 137 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHH
Confidence 578999999999999999999987 44444
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.20 E-value=1.2e-05 Score=69.69 Aligned_cols=98 Identities=21% Similarity=0.194 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc---------
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--------- 165 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVg--------- 165 (238)
..+++.++....+++++++-.|..|++|+..+..+ ...+.+-+.++||.+|+|+-+. ..+-+.+..+.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~~ 110 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSF--TKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLEP 110 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCCh--hhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCCC
Confidence 56789999999999999999999999999976443 5567899999999999999775 44444444332
Q ss_pred --C-----CC--HHHHHHHHHHHHHhCCCceee-cHHHHH
Q 026467 166 --G-----VS--TAEMNRMEVKFLFSLDFRLQV-NVETFH 195 (238)
Q Consensus 166 --G-----is--~~ELN~LE~~FL~lLdf~L~V-s~eef~ 195 (238)
. +. .+++-.||+.+|..|+|+|.+ ++..|-
T Consensus 111 ~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl 150 (257)
T 2ivx_A 111 LLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV 150 (257)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence 1 11 799999999999999999987 454443
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.08 E-value=2.6e-05 Score=69.23 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccc----------
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV---------- 164 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkV---------- 164 (238)
..+++.++....+++++++-.|.+|++|+..+..+ ...+.+-+.++||.+|+|+-+-...+......+
T Consensus 46 ~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYSL--KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCT--TTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCc--hhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 56889999999999999999999999999876444 456789999999999999865543222222111
Q ss_pred ------cCCCHHHHHHHHHHHHHhCCCceeec-HHH-HHHHHHHH
Q 026467 165 ------GGVSTAEMNRMEVKFLFSLDFRLQVN-VET-FHKFCSQL 201 (238)
Q Consensus 165 ------gGis~~ELN~LE~~FL~lLdf~L~Vs-~ee-f~~Y~~~L 201 (238)
...+.+++-.||+.+|..|+|+|.|. +.. ..+|+..+
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 12578999999999999999999883 433 34555444
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.97 E-value=8.5e-06 Score=74.88 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccC--------
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGG-------- 166 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgG-------- 166 (238)
+.+||.++....+++++++.+|..|+||+.....+ ...+.+-+.++||.||+|+-+. ..+-+.+..+..
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv--~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~~ 117 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSF--TRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQES 117 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhccccc
Confidence 67789999999999999999999999999976443 5567899999999999999765 333333333220
Q ss_pred --------C--CHHHHHHHHHHHHHhCCCceeec
Q 026467 167 --------V--STAEMNRMEVKFLFSLDFRLQVN 190 (238)
Q Consensus 167 --------i--s~~ELN~LE~~FL~lLdf~L~Vs 190 (238)
+ ..++|-.||+.+|..|+|+|.+.
T Consensus 118 ~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~ 151 (358)
T 2pk2_A 118 LPDTRSEAYLQQVQDLVILESIILQTLGFELTID 151 (358)
T ss_dssp CCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCC
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHcCCceeCC
Confidence 1 26789999999999999999873
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.91 E-value=0.00014 Score=65.64 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=79.0
Q ss_pred HHHHHHHHHcC--CChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCC-------
Q 026467 97 QYIDRIFKYGA--CSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGV------- 167 (238)
Q Consensus 97 ~yl~rI~~~~~--~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGi------- 167 (238)
+++.++....+ +++.++-.|.+|++|+..+..+ ...+.+-+.++||.+|+|+-+- ..+-+.+..+...
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~~ 138 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSV--MEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQEK 138 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCCh--hhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhHH
Confidence 56788888899 9999999999999999976444 4567899999999999998664 3444555544322
Q ss_pred CHHHHHHHHHHHHHhCCCceee-cHHH-HHHHHHHHH
Q 026467 168 STAEMNRMEVKFLFSLDFRLQV-NVET-FHKFCSQLG 202 (238)
Q Consensus 168 s~~ELN~LE~~FL~lLdf~L~V-s~ee-f~~Y~~~L~ 202 (238)
..++|-.||+.+|..|+|+|.| ++-. ...|+..+.
T Consensus 139 ~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~ 175 (323)
T 1jkw_A 139 ALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175 (323)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHH
Confidence 2689999999999999999988 3443 345655553
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.74 E-value=0.00025 Score=59.45 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNR 174 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN~ 174 (238)
-.+++.++....+++..+.-.|..|++|+..+..+ ...+..-+..+|+-+|+|.-+ ...+-+.++.+.+++.+++..
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~--~~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~~ 84 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL--KGRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIGR 84 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCS--TTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--CCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHH
Confidence 35688899999999999999999999999876444 445788999999999999855 467888899999999999999
Q ss_pred HHHHHHHhCCCceeec--HHHHHHHHHHH
Q 026467 175 MEVKFLFSLDFRLQVN--VETFHKFCSQL 201 (238)
Q Consensus 175 LE~~FL~lLdf~L~Vs--~eef~~Y~~~L 201 (238)
+|+.+|+.|+|++.+. .....+|+..|
T Consensus 85 ~~~~ll~~L~~~l~~~~p~~~l~r~~~~l 113 (207)
T 1c9b_A 85 CFKLILKALETSVDLITTGDFMSRFCSNL 113 (207)
T ss_dssp HHHHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence 9999999999999773 34444555433
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.25 E-value=0.0014 Score=54.37 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 173 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN 173 (238)
.-.+++.++....++++.+.=.|..|.+|+..+..+ ...+..-+..+|+-+|+|..+ ...+-+.++.+.|++.+++.
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~--~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~v~~~~i~ 87 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLI--RGRSIESVMAACVYAACRLLK-VPRTLDEIADIARVDKKEIG 87 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTT--TTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc--CCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHH
Confidence 356789999999999999999999999999876433 345678889999999999866 67788889999999999999
Q ss_pred HHHHHHHHhCCCceee---cHHH-HHHHHHHH
Q 026467 174 RMEVKFLFSLDFRLQV---NVET-FHKFCSQL 201 (238)
Q Consensus 174 ~LE~~FL~lLdf~L~V---s~ee-f~~Y~~~L 201 (238)
..++.++..|++++.+ ++.. ..+|+..|
T Consensus 88 ~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L 119 (200)
T 1ais_B 88 RSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 119 (200)
T ss_dssp HHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence 9999999999999874 3433 33555444
No 18
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=93.13 E-value=0.28 Score=40.28 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=74.5
Q ss_pred CCc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCC
Q 026467 90 APT--ISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGV 167 (238)
Q Consensus 90 ~P~--isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGi 167 (238)
.|. +.-.+|+.|+.+..+++.++.-.|..++.+.... +. ....++.-+..+|+-+|++..+. ..+.+.++++.|+
T Consensus 101 ~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~-~~-~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~v 177 (200)
T 1ais_B 101 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKR-GL-TSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVARV 177 (200)
T ss_dssp TTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHT-TC-CTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHTC
T ss_pred CCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-Cc-ccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhCC
Confidence 444 5778999999999999999888888777777653 22 34577889999999999998764 3467788999999
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 026467 168 STAEMNRMEVKFLFSLDFR 186 (238)
Q Consensus 168 s~~ELN~LE~~FL~lLdf~ 186 (238)
+..++..-=+++...++.+
T Consensus 178 s~~ti~~~~~~l~~~l~~~ 196 (200)
T 1ais_B 178 TEVTVRNRYKELVEKLKIK 196 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHcCCC
Confidence 9999988888887777644
No 19
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.12 Score=46.78 Aligned_cols=88 Identities=8% Similarity=-0.044 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 173 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN 173 (238)
....++.++....+++..+.=.|..|..|+.....+ ...+..-+..+||-+|.|. +....+-+.++.+.+++.+||.
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~--kgr~~~~vaaAclyiAcR~-e~~prtl~ei~~~~~v~~keIg 204 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTL--KGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSS--CCCCSHHHHTTTTTTTSBT-TBSSCCHHHHHHSSSCCSHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--cCCcHHHHHHHHHHHHHHH-cCCCccHHHHHHHHCCCHHHHH
Confidence 456889999999999999999999999998876433 3445678889999999994 5567788888999999999999
Q ss_pred HHHHHHHHhCC
Q 026467 174 RMEVKFLFSLD 184 (238)
Q Consensus 174 ~LE~~FL~lLd 184 (238)
..++.+++.|+
T Consensus 205 r~~~~l~~~L~ 215 (345)
T 3k7a_M 205 KTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=90.91 E-value=0.71 Score=38.04 Aligned_cols=86 Identities=8% Similarity=0.059 Sum_probs=64.6
Q ss_pred CcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHH
Q 026467 91 PTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTA 170 (238)
Q Consensus 91 P~isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ 170 (238)
|.+.-..|+.|+.+..+++.++.-.|...+.+... .+. .....++-+..+|+-+|++..+ ...+.+.|+++.|++..
T Consensus 98 ~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~-~~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~v~~~ 174 (207)
T 1c9b_A 98 DLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVE-LDL-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAGVADV 174 (207)
T ss_dssp CCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTC-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHTCCHH
T ss_pred CcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCc-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCHH
Confidence 44566899999999999999887788766666554 222 3456788999999999999875 44566788888998888
Q ss_pred HHHHHHHHH
Q 026467 171 EMNRMEVKF 179 (238)
Q Consensus 171 ELN~LE~~F 179 (238)
++..-=+++
T Consensus 175 tI~~~~~~l 183 (207)
T 1c9b_A 175 TIRQSYRLI 183 (207)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776554433
No 21
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=81.83 E-value=11 Score=31.67 Aligned_cols=89 Identities=9% Similarity=-0.017 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-c-----cccccccc
Q 026467 94 SIQQYIDRIFKYGACSP----SCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-F-----FNNAYYAR 163 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~----~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~-~-----y~N~~~Ak 163 (238)
.-.+|+.++.+..+.+. ...-.|..+++...... . .-....+-+-++|+.+|.+.++-. . .....|-.
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~-~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~ 227 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTT-L-SLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWE 227 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTT-G-GGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGG
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCC-c-hhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHH
Confidence 46789999999999887 45666766666655432 2 234677899999999999988642 1 12234544
Q ss_pred c--cCCCHHHHHHHHHHHHHhCC
Q 026467 164 V--GGVSTAEMNRMEVKFLFSLD 184 (238)
Q Consensus 164 V--gGis~~ELN~LE~~FL~lLd 184 (238)
. .|++..++...-.+++.+.+
T Consensus 228 ~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 228 QFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp GTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HhccCCCHHHHHHHHHHHHHHHh
Confidence 3 59999999999999887754
No 22
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=80.64 E-value=4.9 Score=34.91 Aligned_cols=96 Identities=5% Similarity=-0.087 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHH
Q 026467 95 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNR 174 (238)
Q Consensus 95 i~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN~ 174 (238)
-++|+.++++..+.+....-.|..++......+ . .-....+-+..+|+.+|.+.++... ..|..+.|++.+++..
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~-~-~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~~ 231 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTD-L-CLLYPPFMIALACLHVACVVQQKDA---RQWFAELSVDMEKILE 231 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-H-HHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC-h-hhccCHHHHHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHHH
Confidence 368999999998988888888877777655322 2 2235678899999999999887432 5688889999999999
Q ss_pred HHHHHHHhC-CCceeecHHHHH
Q 026467 175 MEVKFLFSL-DFRLQVNVETFH 195 (238)
Q Consensus 175 LE~~FL~lL-df~L~Vs~eef~ 195 (238)
.-.++|.+. .|+-+-..+++.
T Consensus 232 ~~~~il~ly~~~~~~~~~~~~~ 253 (285)
T 3rgf_B 232 IIRVILKLYEQWKNFDERKEMA 253 (285)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhhHH
Confidence 999999875 344443444443
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=80.19 E-value=16 Score=30.73 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcc---cccccccc--cCCC
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFF---NNAYYARV--GGVS 168 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y---~N~~~AkV--gGis 168 (238)
.-+.|+.++++..+.+....-.|..++.......... -....+-+-.+|+.+|.+.++-..- ....|... .|++
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~-l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~ 223 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFC-LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVT 223 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGG-GTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCC
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHH-HcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCC
Confidence 4678999999999999888788877775544222222 2356788999999999999863321 23457664 4799
Q ss_pred HHHHHHHHHHHHHhC
Q 026467 169 TAEMNRMEVKFLFSL 183 (238)
Q Consensus 169 ~~ELN~LE~~FL~lL 183 (238)
..++...-.+++.+.
T Consensus 224 ~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 224 LELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=78.59 E-value=6.7 Score=35.30 Aligned_cols=90 Identities=8% Similarity=-0.052 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 173 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN 173 (238)
.....|.++....+++..+.=.|..+..|+.....+ .-.+..-+..+|+-+|.|- .....+-+.++.+.+++.+||.
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~--rGrs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~keig 204 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTL--KGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTT--TTCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cCCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHHHH
Confidence 566789999999999999999998888888765333 3446788899999999995 4577788888999999999999
Q ss_pred HHHHHHHHhCCCc
Q 026467 174 RMEVKFLFSLDFR 186 (238)
Q Consensus 174 ~LE~~FL~lLdf~ 186 (238)
...+.++..|+..
T Consensus 205 r~~k~l~~~L~l~ 217 (345)
T 4bbr_M 205 KTLNIMKNILRGK 217 (345)
T ss_dssp HHHHHHHHCC---
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999864
No 25
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=73.97 E-value=9.1 Score=34.53 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCc---ccccccccc--cCCC
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAF---FNNAYYARV--GGVS 168 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~---y~N~~~AkV--gGis 168 (238)
.-+.||.++++..+.+.+..-+|..++........+. -....+-+-++||.+|.++++-.. .....|..+ .+++
T Consensus 152 ~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~-l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt 230 (358)
T 2pk2_A 152 HPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS-LQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVT 230 (358)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGG-GTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCC
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCC
Confidence 3457999999999999888888877776654322322 235678888999999999986331 123557766 4789
Q ss_pred HHHHHHHHHHHHHhCC
Q 026467 169 TAEMNRMEVKFLFSLD 184 (238)
Q Consensus 169 ~~ELN~LE~~FL~lLd 184 (238)
..+|...-.++|.+++
T Consensus 231 ~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 231 LELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 26
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=69.52 E-value=8.4 Score=32.17 Aligned_cols=84 Identities=6% Similarity=0.004 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcc-cccccccccCCCHHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFF-NNAYYARVGGVSTAEM 172 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y-~N~~~AkVgGis~~EL 172 (238)
.-.+|+.++++..+++++..-.|..++....... . .-.....-+-.+|+.+|.+..+...- ....|+ |++..++
T Consensus 133 ~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~-~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~---~~~~~~i 207 (235)
T 1zp2_A 133 HPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASS-L-CLMAHPHQLAYAALLISCCNDENTIPKLLDLIK---STDAFKV 207 (235)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTT-G-GGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC---HHHHHHH
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-c-hhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh---cCCHHHH
Confidence 4568999999988999998888888887765432 2 23456788999999999998753211 112222 5666666
Q ss_pred HHHHHHHHHh
Q 026467 173 NRMEVKFLFS 182 (238)
Q Consensus 173 N~LE~~FL~l 182 (238)
...=.+++.+
T Consensus 208 ~~~~~~i~~l 217 (235)
T 1zp2_A 208 ILCVQRIISI 217 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=65.27 E-value=13 Score=31.46 Aligned_cols=87 Identities=6% Similarity=-0.029 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHcCCChHHH----HHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccc----cccccccc
Q 026467 94 SIQQYIDRIFKYGACSPSCF----VIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFN----NAYYARVG 165 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~----llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~----N~~~AkVg 165 (238)
+-.+|+.++++..+.+.+.. -.|..+++.-.. ..........-+-.+|+.+|.+...+..++ ....+++.
T Consensus 151 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~--d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t 228 (254)
T 2f2c_A 151 LATDFLIPLCNALKIPEDLWPQLYEAASTTICKALI--QPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL 228 (254)
T ss_dssp CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTT--SGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHc--CcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 45688899988888877642 234444543322 222344567788889999999986333332 34445567
Q ss_pred CCCHHHHHHHHHHHHHh
Q 026467 166 GVSTAEMNRMEVKFLFS 182 (238)
Q Consensus 166 Gis~~ELN~LE~~FL~l 182 (238)
|++..++...=..+..+
T Consensus 229 g~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 229 NFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 88877777665555544
No 28
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=64.90 E-value=1.3 Score=39.78 Aligned_cols=89 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCH
Q 026467 90 APTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVST 169 (238)
Q Consensus 90 ~P~isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~ 169 (238)
.|.+...+|+.|+.+..+++..+.-.|.-++.+.... . .....+++-+..+||.+|++.++.. .+.+.|+++.||+.
T Consensus 230 ~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~-~-l~~Gr~P~~IAaAaIylAa~~~~~~-~t~~eIa~~~~Vse 306 (345)
T 3k7a_M 230 MSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI-K-EIAGKSPITIAVVSIYLNILLFQIP-ITAAKVGQTLQVTE 306 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-c-hhcCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCH
Confidence 4445566888888888888777777776666655442 1 2344567788899999999987643 46788999999987
Q ss_pred HHHHHHHHHHHH
Q 026467 170 AEMNRMEVKFLF 181 (238)
Q Consensus 170 ~ELN~LE~~FL~ 181 (238)
..|..-=.+++.
T Consensus 307 ~TIr~~ykel~~ 318 (345)
T 3k7a_M 307 GTIKSGYKILYE 318 (345)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 777654444443
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=63.77 E-value=11 Score=32.24 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 026467 94 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 173 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~ELN 173 (238)
+-.+|+.++.+..+.+....-+|..+++.-..... .......-+-.+|+.+|.+.++... ++...+.+.|++..++.
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~--~~~~~Ps~iAaAai~lA~~~l~~~~-w~~~l~~~tg~~~~~l~ 213 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYD--MVHFPPSQIAAGAFSLALKILDNGE-WTPTLQHYLSYTEESLL 213 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGG--GSSSCTTHHHHHHHHHHHHHHTCCC-SCTTHHHHSCCCSSTTT
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhh--hhcCCHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHCCCHHHHH
Confidence 56799999999999998888788777776554322 2345566888999999999887652 33444556788766654
Q ss_pred HHHHHH
Q 026467 174 RMEVKF 179 (238)
Q Consensus 174 ~LE~~F 179 (238)
..=..+
T Consensus 214 ~~~~~l 219 (269)
T 2b9r_A 214 PVMQHL 219 (269)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 443333
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=57.12 E-value=2.2 Score=38.51 Aligned_cols=92 Identities=9% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCH
Q 026467 90 APTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVST 169 (238)
Q Consensus 90 ~P~isi~~yl~rI~~~~~~s~~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~ 169 (238)
.|.+...+|+.|+....+++.++.-.|.-.+.+.... ....-.+..-+..+||.+|+...+. -.+.+..+++.||+.
T Consensus 230 ~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~--~i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v~~Vse 306 (345)
T 4bbr_M 230 MSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI--KEIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQVTE 306 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--ccccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHHHCCCH
Confidence 5677788999999999999888877776666666542 2234456777888999999998764 457788889999987
Q ss_pred HHHHHHHHHHHHhCC
Q 026467 170 AEMNRMEVKFLFSLD 184 (238)
Q Consensus 170 ~ELN~LE~~FL~lLd 184 (238)
..|..-=.+|+..++
T Consensus 307 ~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 307 GTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 777665555554443
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=56.95 E-value=29 Score=29.28 Aligned_cols=86 Identities=9% Similarity=0.018 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHH
Q 026467 94 SIQQYIDRIFKYGACSP-SCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEM 172 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~-~~~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~AkVgGis~~EL 172 (238)
+-.+|+.++++..+.+. ...-+|..+++.-..... ........-+-.+|+.+|.+.++... ++...+.+.|++..++
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~-~~~~~~Ps~iAaAai~lA~~~~~~~~-w~~~l~~~~g~~~~~i 215 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDAD-PYLKYLPSVIAGAAFHLALYTVTGQS-WPESLIRKTGYTLESL 215 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHH-HHTTSCHHHHHHHHHHHHHHHHHSCC-SCHHHHHHHCCCHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHH-HHhCCCHHHHHHHHHHHHHHHhCCCc-chHHHHHHhCcCHHHH
Confidence 67899999999998775 666667666655332211 02335567888999999999887522 2233344567777666
Q ss_pred HHHHHHHHH
Q 026467 173 NRMEVKFLF 181 (238)
Q Consensus 173 N~LE~~FL~ 181 (238)
...=..++.
T Consensus 216 ~~~~~~l~~ 224 (260)
T 2cch_B 216 KPCLMDLHQ 224 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 654444443
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=51.39 E-value=25 Score=30.74 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHcCCChHHH----HHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccc----cccc
Q 026467 94 SIQQYIDRIFKYGACSPSCF----VIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYY----ARVG 165 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~----llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~~y~N~~~----AkVg 165 (238)
+..+|+.++++..+.+.... -.|..+++--... ...-.....-+-.+|+.+|.+.++....+...| +++.
T Consensus 170 tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d--~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t 247 (306)
T 3g33_B 170 IAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATD--YTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGIT 247 (306)
T ss_dssp CGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHC--GGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh--hhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence 45678888888877764422 2344445432222 222345667888999999999998655443333 3456
Q ss_pred CCCHHHHHHHHHHHHHh
Q 026467 166 GVSTAEMNRMEVKFLFS 182 (238)
Q Consensus 166 Gis~~ELN~LE~~FL~l 182 (238)
|++..++...-..++.+
T Consensus 248 g~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 248 GTEVDCLRACQEQIEAA 264 (306)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77777766654444443
No 33
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=49.12 E-value=49 Score=27.79 Aligned_cols=87 Identities=8% Similarity=-0.108 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHcCCChHH----HHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-----cccccccccc
Q 026467 94 SIQQYIDRIFKYGACSPSC----FVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-----FFNNAYYARV 164 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~----~llALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD~-----~y~N~~~AkV 164 (238)
+-.+|+.++++..+.+.+. .-.|..+++.-... .........-+-.+|+.+|.+.++-. ..+....+++
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~ 227 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVD--PLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASI 227 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTS--TTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhC--cchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH
Confidence 6789999999988887654 22344555433322 22344567788899999999988621 1122223335
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 026467 165 GGVSTAEMNRMEVKFLFS 182 (238)
Q Consensus 165 gGis~~ELN~LE~~FL~l 182 (238)
.|++..++...=..++.+
T Consensus 228 t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 228 LGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHH
Confidence 677777666554444443
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=46.57 E-value=72 Score=26.93 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHcCCChHHHH----HHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhccc----Cccccc----cc
Q 026467 94 SIQQYIDRIFKYGACSPSCFV----IAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDD----AFFNNA----YY 161 (238)
Q Consensus 94 si~~yl~rI~~~~~~s~~~~l----lALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsKf~dD----~~y~N~----~~ 161 (238)
+-.+|+.++++..+.+....- .|..+++.... ..........-+-.+|+.+|.+.++- ...+.. ..
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~--d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l 233 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCAT--DVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFL 233 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHT--STHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHh--hhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHH
Confidence 688999999999998876531 34444443222 22223456778888889999887742 122222 22
Q ss_pred ccccCCCHHHHHHHHHHHHHh
Q 026467 162 ARVGGVSTAEMNRMEVKFLFS 182 (238)
Q Consensus 162 AkVgGis~~ELN~LE~~FL~l 182 (238)
+++.|++..++..-=.+++.+
T Consensus 234 ~~~~~v~~~~l~~c~~~i~~l 254 (271)
T 2w96_A 234 SRVIKCDPDCLRACQEQIEAL 254 (271)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHH
Confidence 334666666655544444443
Done!