Query 026468
Match_columns 238
No_of_seqs 58 out of 60
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r9z_A WHY2 protein; stwhy2, s 100.0 8.7E-73 3E-77 482.8 17.8 166 50-215 2-169 (178)
2 1l3a_A PBF-2, P24: plant trans 100.0 4.1E-70 1.4E-74 480.3 18.5 172 52-223 31-204 (227)
3 1aoc_A Coagulogen; coagulation 53.4 8 0.00027 32.2 2.7 52 60-118 78-129 (175)
4 3pm7_A Uncharacterized protein 25.4 48 0.0016 24.9 2.8 22 184-205 54-75 (80)
5 1vq8_1 50S ribosomal protein L 24.2 23 0.00079 25.1 0.8 14 103-116 42-55 (57)
6 2quo_A Heat-labIle enterotoxin 20.2 1.4E+02 0.0048 23.4 4.6 61 107-174 36-100 (126)
7 1ylx_A Hypothetical protein AP 20.0 1.9E+02 0.0064 22.6 5.2 41 54-97 39-79 (103)
8 3j21_e 50S ribosomal protein L 16.0 38 0.0013 24.4 0.4 14 103-116 42-55 (62)
9 3iz5_l 60S ribosomal protein L 12.0 59 0.002 25.1 0.5 14 103-116 40-53 (94)
10 4g06_A Uncharacterized protein 11.4 1.5E+02 0.0051 22.2 2.6 17 184-200 61-77 (79)
No 1
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=8.7e-73 Score=482.79 Aligned_cols=166 Identities=65% Similarity=1.023 Sum_probs=150.3
Q ss_pred ccCCCCCCeeeeceeEeecceeEEEeecCCceeecCCCCeEEeeeceEEEEEeecccCcccccccceEEEeChhhhhhhh
Q 026468 50 SAKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLL 129 (238)
Q Consensus 50 ~~~~~~~~rvf~~ysVYkgKAALsv~pi~P~F~~~~sG~~kv~R~G~IlLeFAPavG~rqYDW~kKq~FsLS~tEvG~LL 129 (238)
+++|.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||||++|+|||||+|||+|+||++|||+||
T Consensus 2 ~~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Ll 81 (178)
T 3r9z_A 2 ADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLI 81 (178)
T ss_dssp -----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHH
T ss_pred CCCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeeeeCcCccCCCcccceeeEEEeeCCCC--ceEEEEEeecccCCCceEEEeecHHHHHHHHHHHHhhhhhhc
Q 026468 130 TMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACSVCTNEIA 207 (238)
Q Consensus 130 sl~~~~s~effHDP~~g~S~~g~v~K~Lkiep~pdG--~f~nLsV~n~~~~~~~~~~vpVT~gEf~v~rsl~~y~lP~LL 207 (238)
+++++++|||||||+|++|++|+++|+|+|||+||| +||||+|+|++++++++++||||+|||+|||++|+|+|||||
T Consensus 82 sl~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~~~~~~~~~vpvt~gEfav~~~~~~~~lP~Ll 161 (178)
T 3r9z_A 82 SMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIM 161 (178)
T ss_dssp TCCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETTTTEEEEEEEEEEHHHHHHHHHHHHHHHHHHT
T ss_pred HhcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEecccccccccEEEEecHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 026468 208 SRSQLGSP 215 (238)
Q Consensus 208 GW~a~~np 215 (238)
|||+++|.
T Consensus 162 Gw~~~~~~ 169 (178)
T 3r9z_A 162 GWDRFTNR 169 (178)
T ss_dssp TGGGCCC-
T ss_pred chHHHhCC
Confidence 99997664
No 2
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=4.1e-70 Score=480.31 Aligned_cols=172 Identities=40% Similarity=0.706 Sum_probs=162.7
Q ss_pred CCCCCCeeeeceeEeecceeEEEeecCCceeecCCCCeEEeeeceEEEEEeecccCcccccccceEEEeChhhhhhhhhc
Q 026468 52 KGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTM 131 (238)
Q Consensus 52 ~~~~~~rvf~~ysVYkgKAALsv~pi~P~F~~~~sG~~kv~R~G~IlLeFAPavG~rqYDW~kKq~FsLS~tEvG~LLsl 131 (238)
++.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||||++|+|||||+|||+|+||++|||+||++
T Consensus 31 a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEFAPa~g~RqYDW~kKq~FsLS~tEvG~LLsl 110 (227)
T 1l3a_A 31 QGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISL 110 (227)
T ss_dssp ----CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEEEEBCSTTCBCGGGCEEEEECHHHHHHHHTC
T ss_pred CCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEEeeccCccccccccceEEEeCHHHHhHHHhc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeCcCccCCCcccceeeEEEeeCCCC--ceEEEEEeecccCCCceEEEeecHHHHHHHHHHHHhhhhhhccc
Q 026468 132 GPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACSVCTNEIASR 209 (238)
Q Consensus 132 ~~~~s~effHDP~~g~S~~g~v~K~Lkiep~pdG--~f~nLsV~n~~~~~~~~~~vpVT~gEf~v~rsl~~y~lP~LLGW 209 (238)
+++++|||||||+|++|++|+++|+|+|||+||| +||||+|+|++++.+++|+||||+|||+|||++|+|+|||||||
T Consensus 111 ~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~~~de~~~VpVs~gEfaV~rsl~~f~LP~LlGw 190 (227)
T 1l3a_A 111 GTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGW 190 (227)
T ss_dssp CTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTEEEEEEEEEEHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeecccCCcceEEEechHHHHHHHHHHHHhhchhhcch
Confidence 9999999999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccee
Q 026468 210 SQLGSPAVICCSQV 223 (238)
Q Consensus 210 ~a~~np~~~~~~~~ 223 (238)
|+++|+.+.||+.-
T Consensus 191 ~a~~~~~~~~~~~~ 204 (227)
T 1l3a_A 191 HTAVNSFKPEDASR 204 (227)
T ss_dssp HHHHTTCSCC----
T ss_pred hhccccCChhhccc
Confidence 99999999999863
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=53.38 E-value=8 Score=32.21 Aligned_cols=52 Identities=27% Similarity=0.577 Sum_probs=44.2
Q ss_pred eeceeEeecceeEEEeecCCceeecCCCCeEEeeeceEEEEEeecccCcccccccceEE
Q 026468 60 FAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHF 118 (238)
Q Consensus 60 f~~ysVYkgKAALsv~pi~P~F~~~~sG~~kv~R~G~IlLeFAPavG~rqYDW~kKq~F 118 (238)
|+||+-|++.+-.+.+..-|.|.---+|-|. |+.| ||.+|-||--|+.|-.|
T Consensus 78 f~pf~hf~secpvstrdcepvfgyt~a~efr------vivq-apragfrqcvwqhkcry 129 (175)
T 1aoc_A 78 FPPFTHFKSECPVSTRDCEPVFGYTVAGEFR------VIVQ-APRAGFRQCVWQHKCRF 129 (175)
T ss_dssp STTCCCCSSBCCEEEECCCCSEEEBTTCCEE------EECC-BTTTTBCBCCCEEEETT
T ss_pred CCCcccccccCCcccccccccccceecceEE------EEEe-CchhhhHHHHHhhhccc
Confidence 5999999999999999999999877676654 4444 79999999999998765
No 4
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=25.40 E-value=48 Score=24.95 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.2
Q ss_pred EEeecHHHHHHHHHHHHhhhhh
Q 026468 184 VVPVSTAEFAVMKTACSVCTNE 205 (238)
Q Consensus 184 ~vpVT~gEf~v~rsl~~y~lP~ 205 (238)
.|++|..|+.+|+.+++.++-+
T Consensus 54 GITLT~eE~~~Lk~~L~~~~~~ 75 (80)
T 3pm7_A 54 GITLTNEEFAELSKTIKSMLEH 75 (80)
T ss_dssp EEEECHHHHHHHHHHHHHTCC-
T ss_pred cceeCHHHHHHHHHHHHHHHHh
Confidence 5999999999999999987754
No 5
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=24.20 E-value=23 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=11.3
Q ss_pred ecccCcccccccce
Q 026468 103 PAIGERKYDWAKKQ 116 (238)
Q Consensus 103 PavG~rqYDW~kKq 116 (238)
|+.--|+|+|+.|-
T Consensus 42 pa~r~R~ynWs~Ka 55 (57)
T 1vq8_1 42 KSAKRRDYEWQSKA 55 (57)
T ss_dssp TCSSCCCCGGGSCT
T ss_pred chhhhcCcchhhhh
Confidence 66667999999873
No 6
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=20.18 E-value=1.4e+02 Score=23.39 Aligned_cols=61 Identities=16% Similarity=0.378 Sum_probs=41.6
Q ss_pred CcccccccceEEEeChhhhhhhhhcCCCCceeeeeCcCccCCCcccceeeEEEee-CCCC---ceEEEEEee
Q 026468 107 ERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKA-NADG---FFISLNVAN 174 (238)
Q Consensus 107 ~rqYDW~kKq~FsLS~tEvG~LLsl~~~~s~effHDP~~g~S~~g~v~K~Lkiep-~pdG---~f~nLsV~n 174 (238)
...|-|++|...-|+.+.-|+--.+.+.+-+.|-... + +-....++|. +.|| +|+.++...
T Consensus 36 snsypwtqklnlhltitatgqkyrilaskivdfniys-----n--nfnnlvkleqslgdgvkdhyvdislda 100 (126)
T 2quo_A 36 SNSYPWTQKLNLHLTITATGQKYRILASKIVDFNIYS-----N--NFNNLVKLEQSLGDGVKDHYVDISLDA 100 (126)
T ss_dssp SSCBCTTCCEEEEEEECSSSEEEEEEECTTEEEEEEE-----C--TTSSCEEEEEECCCSSSCEEEEEEECS
T ss_pred cCCCcchheeeeEEEEEecCcEEeeeeeeeeeeEeec-----c--chhHHHHHHHHhcccchhceEEEEecC
Confidence 3578899999999999999988777776666554321 1 1123345555 6677 888887643
No 7
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=20.01 E-value=1.9e+02 Score=22.63 Aligned_cols=41 Identities=22% Similarity=0.501 Sum_probs=32.3
Q ss_pred CCCCeeeeceeEeecceeEEEeecCCceeecCCCCeEEeeeceE
Q 026468 54 SLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVI 97 (238)
Q Consensus 54 ~~~~rvf~~ysVYkgKAALsv~pi~P~F~~~~sG~~kv~R~G~I 97 (238)
.+.+|.|.+|+|=|..-++.+.- | |..-.+|.+.+.|.++-
T Consensus 39 Gegn~YY~GYTVkKdd~~~~ih~--P-fikdedG~La~ekqeWT 79 (103)
T 1ylx_A 39 GEGNRYYVGYTINKDDEMITIHM--P-FVKNERGELALEKQEWT 79 (103)
T ss_dssp CSTTEEEEEEEEEETTEEEEEEE--E-EEECTTSCEEECCSCEE
T ss_pred CCCceEEEEEEEccCCeEEEEec--c-ceecCCCceeeecceeE
Confidence 56799999999999998887752 3 77778888877776653
No 8
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=16.00 E-value=38 Score=24.41 Aligned_cols=14 Identities=43% Similarity=0.677 Sum_probs=10.6
Q ss_pred ecccCcccccccce
Q 026468 103 PAIGERKYDWAKKQ 116 (238)
Q Consensus 103 PavG~rqYDW~kKq 116 (238)
|+.--|+|+|+.|-
T Consensus 42 ps~r~R~YnWs~Ka 55 (62)
T 3j21_e 42 RSRRLRKYRWSKKW 55 (62)
T ss_dssp TCSSCCCCTTCSHH
T ss_pred hhhhhccccHHHHh
Confidence 55556899999873
No 9
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=11.97 E-value=59 Score=25.13 Aligned_cols=14 Identities=50% Similarity=0.952 Sum_probs=11.6
Q ss_pred ecccCcccccccce
Q 026468 103 PAIGERKYDWAKKQ 116 (238)
Q Consensus 103 PavG~rqYDW~kKq 116 (238)
|+.--|+|+|+.|.
T Consensus 40 ps~r~R~YnWs~Ka 53 (94)
T 3iz5_l 40 PAARIRKYNWSVKA 53 (94)
T ss_dssp SCSSCCCCSSSCHH
T ss_pred chhhcccccHHHhh
Confidence 76778999999874
No 10
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=11.41 E-value=1.5e+02 Score=22.21 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.6
Q ss_pred EEeecHHHHHHHHHHHH
Q 026468 184 VVPVSTAEFAVMKTACS 200 (238)
Q Consensus 184 ~vpVT~gEf~v~rsl~~ 200 (238)
.|++|..|+.+|+.+++
T Consensus 61 GITLT~eE~~~L~~~L~ 77 (79)
T 4g06_A 61 GITLSNEEFQTMVDAFK 77 (79)
T ss_dssp CEEECHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHc
Confidence 49999999999999986
Done!