BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026469
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 76/93 (81%)
Query: 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQR 114
+ REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVSE+ISFIT EA+ERC +E+R
Sbjct: 1 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKR 60
Query: 115 KTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE 147
KTI ED+L+AMS LGFD Y+EPL +YL ++RE
Sbjct: 61 KTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 76/93 (81%)
Query: 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQR 114
+ REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVSE+ISFIT EA+ERC +E+R
Sbjct: 2 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKR 61
Query: 115 KTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE 147
KTI ED+L+AMS LGFD Y+EPL +YL ++RE
Sbjct: 62 KTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 94
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 79/92 (85%)
Query: 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 115
++EQDR++PIANV RIM+ LP++AKI+ +AKE +QECVSE+ISFIT EA+E+CQ+E+RK
Sbjct: 1 MKEQDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRK 60
Query: 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE 147
T+ ED+L+AM+ LGF++Y E L +YL +YRE
Sbjct: 61 TVNGEDILFAMTSLGFENYAEALKIYLSKYRE 92
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTI 117
+ D +P A + +++++ LP + ++++DA+E + C +E+I I+ EANE C + ++KTI
Sbjct: 11 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 69
Query: 118 TAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
+ E V+ A+ LGF YI + L + + +R
Sbjct: 70 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 104
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
R +D +P A + R++++ LP+ A +S +A+ I S + F+T + ++ KT
Sbjct: 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKT 63
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYR 146
ITA+D+L +++L F+ ++ LT L YR
Sbjct: 64 ITAKDILQTLTELDFESFVPSLTQDLEVYR 93
>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From Methanothermus
Fervidus
Length = 69
Score = 34.3 bits (77), Expect = 0.054, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA + RI++ + ++SDDA+ T+ + + E I EA + + RKTI AED+
Sbjct: 3 LPIAPIGRIIKDAGAE--RVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 123 LWAMSKL 129
A+ +
Sbjct: 61 ELAVRRF 67
>pdb|1KU5|A Chain A, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1KU5|B Chain B, Crystal Structure Of Recombinant Histone Hpha From
Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 70
Score = 33.9 bits (76), Expect = 0.076, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA V R++RK + ++S+ A + + E + EY I +A E + RKT+ ED+
Sbjct: 7 LPIAPVDRLIRKAGAE--RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 64
Query: 123 LWAM 126
A+
Sbjct: 65 KLAI 68
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 33.9 bits (76), Expect = 0.079, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA + RI++ + ++SDDA+ T+ + + E I EA + + RKTI AED+
Sbjct: 3 LPIAPIGRIIKDAGAE--RVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 123 LWAMSKL 129
A+ +
Sbjct: 61 ELAVRRF 67
>pdb|3B0C|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form I
pdb|3B0D|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
pdb|3B0D|B Chain B, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
Length = 111
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 71 IMRKILPQHAK--ISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSK 128
++++I + K ++ DA + +++C Y I+ + Q RKT+ DV M +
Sbjct: 12 LIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71
Query: 129 LGFDDYIEPLTVYLHRYREME 149
G PL V + R+ +E
Sbjct: 72 QGLVTDKMPLHVLVERHLPLE 92
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
Length = 69
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA + RI++ + ++SDDA+ + + + E I EA + + RKTI AED+
Sbjct: 4 LPIAPIGRIIKNAGAE--RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
Length = 68
Score = 32.7 bits (73), Expect = 0.16, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA + RI++ + ++SDDA+ + + + E I EA + + RKTI AED+
Sbjct: 3 LPIAPIGRIIKNAGAE--RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|E Chain E, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|A Chain A, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|B Chain B, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|K Chain K, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 388
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAED 121
+ P + V RI R+ LP K++ D K E +Y +F+ + E +R+ R D
Sbjct: 83 YEPYSKVSRIFRESLP---KVAIDIKFASNE--EDYYNFLHELSLEYTRRKLRSAAQKRD 137
Query: 122 VLWAMSKLGFDDYIEPLTVYLHRYRE 147
+L + DD + + ++ R RE
Sbjct: 138 LLAIQAVRAMDDIDKTINLFSERLRE 163
>pdb|3AZL|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
Length = 106
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 134
+IS E + + ++ + +A + QRKT+TA DV++A+ + G Y
Sbjct: 49 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAQRKTVTAMDVVYALKRQGRTLY 102
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 81 KISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDY 134
+IS E ++ + ++ + +A + +RKT+T+ DV++A+ + G Y
Sbjct: 46 RISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
Length = 268
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAED 121
+ P + V RI R+ LP K++ D K E +Y +F+ + E +R+ R D
Sbjct: 83 YEPYSKVSRIFRESLP---KVAIDIKFASNE--EDYYNFLHELSLEYTRRKLRSAAQKRD 137
Query: 122 VLWAMSKLGFDDYIEPLTVYLHRYRE 147
+L + DD + + ++ R RE
Sbjct: 138 LLAIQAVRAMDDIDKTINLFSERLRE 163
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+P A + RI R+ + + ++S DAK+TI + V ++ A +KT+ E+
Sbjct: 5 LPKAAIERIFRQGIGER-RLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLX-EEH 62
Query: 123 LWAMSKL----GFDDY 134
L A++ + G +DY
Sbjct: 63 LKALADVLXVEGVEDY 78
>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|H Chain H, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 126
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 68 VIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAM 126
V ++++++ P IS A + V++ I GEA+ +R TIT+ ++ A+
Sbjct: 42 VYKVLKQVHPDTG-ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 99
>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 93
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 68 VIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMS 127
V ++++++ P IS A + V++ I GEA+ +R TIT+ ++ A+
Sbjct: 9 VYKVLKQVHPDTG-ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVR 67
Query: 128 KL 129
L
Sbjct: 68 LL 69
>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|D Chain D, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|H Chain H, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1ZBB|D Chain D, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|H Chain H, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|DD Chain d, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|HH Chain h, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|D Chain D, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|H Chain H, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|D Chain D, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|H Chain H, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|D Chain D, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|H Chain H, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|D Chain D, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|H Chain H, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3KUY|D Chain D, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|H Chain H, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LEL|D Chain D, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|H Chain H, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|N Chain N, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|R Chain R, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|D Chain D, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|H Chain H, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|D Chain D, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|H Chain H, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|D Chain D, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|H Chain H, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|D Chain D, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|H Chain H, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|D Chain D, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|H Chain H, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3UT9|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 125
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 68 VIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAM 126
V ++++++ P IS A + V++ I GEA+ +R TIT+ ++ A+
Sbjct: 41 VYKVLKQVHPDTG-ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 125
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 68 VIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAM 126
V ++++++ P IS A + V++ I GEA+ +R TIT+ ++ A+
Sbjct: 41 VYKVLKQVHPDTG-ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAV 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,001,002
Number of Sequences: 62578
Number of extensions: 195090
Number of successful extensions: 414
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 38
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)