BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026469
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 221 bits (562), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 127/159 (79%), Gaps = 12/159 (7%)
Query: 1 MERTGGFRGYRQQLPNAS--RGPGLK----FTETNIRLASAHEINQTNNNNHTNYEDNEC 54
MER GGF GYR+ N + PGL E ++R ++ N+T+N + EC
Sbjct: 1 MER-GGFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNKTSNGG-----EEEC 54
Query: 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQR 114
TVREQDRFMPIANVIRIMR+ILP HAKISDD+KETIQECVSEYISFITGEANERCQREQR
Sbjct: 55 TVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQR 114
Query: 115 KTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGERG 153
KTITAEDVLWAMSKLGFDDYIEPLT+YLHRYRE+EGERG
Sbjct: 115 KTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERG 153
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/123 (73%), Positives = 108/123 (87%), Gaps = 1/123 (0%)
Query: 43 NNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFIT 102
NN + C REQD++MPIANVIRIMRK LP HAKISDDAKETIQECVSEYISF+T
Sbjct: 44 NNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVT 103
Query: 103 GEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGERGS-IRGEPPL 161
GEANERCQREQRKTITAED+LWAMSKLGFD+Y++PLTV+++RYRE+E +RGS +RGEPP
Sbjct: 104 GEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPS 163
Query: 162 VKR 164
+++
Sbjct: 164 LRQ 166
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 97/117 (82%)
Query: 41 TNNNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISF 100
++N++ + + + REQDRF+PIANV RIM+K LP +AKIS DAKET+QECVSE+ISF
Sbjct: 4 SDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 63
Query: 101 ITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGERGSIRG 157
ITGEA+++CQRE+RKTI +D+LWAM+ LGF+DY+EPL VYL +YRE+EGE+ + G
Sbjct: 64 ITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 71/103 (68%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
REQDRF+PIANV RIM+K LP +AKIS DAKET+QECVSE+ISF+TGEA+++CQ+E+RKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGERGSIRGEP 159
I +D+LWAM+ LGF+DY+EPL VYL R+RE+EGER + G P
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGL-GRP 127
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 92/110 (83%), Gaps = 1/110 (0%)
Query: 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 115
VREQDRF+PIAN+ RIM++ LP + KI+ DAKE +QECVSE+ISF+T EA+++CQRE+RK
Sbjct: 28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87
Query: 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGE-RGSIRGEPPLVKR 164
TI +D+LWAM+ LGF+DY+EPL VYL RYREMEG+ +GS +G P K+
Sbjct: 88 TINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKK 137
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 85/96 (88%)
Query: 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 115
VREQDRF+PIAN+ RIM+K +P + KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGE 151
TI +D+LWAM+ LGF+DYIEPL VYL +YREMEG+
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 92/110 (83%), Gaps = 1/110 (0%)
Query: 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 115
VREQDRF+PIAN+ RIM++ LP + KI+ DAKET+QECVSE+ISF+T EA+++CQRE+RK
Sbjct: 27 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGE-RGSIRGEPPLVKR 164
TI +D+LWAM+ LGF+DYI+PL VYL RYREMEG+ +GS +G KR
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKR 136
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 85/96 (88%)
Query: 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 115
VREQDRF+PIAN+ RIM+K +P + KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGE 151
TI +D+LWAM+ LGF+DYIEPL VYL +YREMEG+
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 85/97 (87%)
Query: 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQR 114
+VREQDR++PIAN+ RIM+K LP + KI DAK+T+QECVSE+ISFIT EA+++CQ+E+R
Sbjct: 18 SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKR 77
Query: 115 KTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGE 151
KT+ +D+LWAM+ LGF+DY+EPL +YL RYRE+EG+
Sbjct: 78 KTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD 114
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 85/96 (88%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
+EQDRF+PIANV RIM+K+LP + KIS DAKET+QECVSE+ISF+TGEA+++CQRE+RKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
I +D++WA++ LGF+DY+ PL VYL +YR+ EGE+
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 36 HEINQTNNNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVS 95
H+ + + N+H + ++ + REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVS
Sbjct: 32 HDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 91
Query: 96 EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-MEGERG 153
E+ISFIT EA+ERC +E+RKTI ED+L+AMS LGFD Y+EPL +YL ++RE M+GE+G
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 36 HEINQTNNNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVS 95
H+ + + N+H + ++ + REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVS
Sbjct: 32 HDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 91
Query: 96 EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-MEGERG 153
E+ISFIT EA+ERC +E+RKTI ED+L+AMS LGFD Y+EPL +YL ++RE M+GE+G
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 36 HEINQTNNNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVS 95
H+ + + N+H + ++ + REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVS
Sbjct: 32 HDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 91
Query: 96 EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-MEGERG 153
E+ISFIT EA+ERC +E+RKTI ED+L+AMS LGFD Y+EPL +YL ++RE M+GE+G
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 36 HEINQTNNNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVS 95
H+ + + N+H + ++ + REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVS
Sbjct: 32 HDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 91
Query: 96 EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-MEGERG 153
E+ISFIT EA+ERC +E+RKTI ED+L+AMS LGFD Y+EPL +YL ++RE M+GE+G
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 36 HEINQTNNNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVS 95
H+ + + N+H + ++ + REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVS
Sbjct: 32 HDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 91
Query: 96 EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-MEGERG 153
E+ISFIT EA+ERC +E+RKTI ED+L+AMS LGFD Y+EPL +YL ++RE M+GE+G
Sbjct: 92 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 150
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 36 HEINQTNNNNHTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVS 95
H+ + + N+H + ++ + REQD ++PIANV RIM+ +PQ KI+ DAKE +QECVS
Sbjct: 30 HDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 89
Query: 96 EYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-MEGERG 153
E+ISFIT EA+ERC +E+RKTI ED+L+AMS LGFD Y+EPL +YL ++RE M+GE+G
Sbjct: 90 EFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKG 148
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 84/96 (87%)
Query: 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 115
VREQDRF+PIAN+ RIM+K +P + KI+ DAKET+QECVSE+ISF+T EA+++CQ+E+RK
Sbjct: 32 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRK 91
Query: 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGE 151
TI ED+L+AM LGF++Y++PL +YLH+YRE+ G+
Sbjct: 92 TINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGD 127
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 84/103 (81%)
Query: 56 VREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 115
V+EQDR +PIANV RIM+ ILP +AK+S +AKET+QECVSE+ISF+TGEA+++C +E+RK
Sbjct: 49 VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108
Query: 116 TITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGERGSIRGE 158
T+ +D+ WAM+ LGFDDY L YLHRYR +EGE+ + G+
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGK 151
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 94/132 (71%), Gaps = 10/132 (7%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
+EQDRF+PIAN+ RIMR+ +P++ KI+ D+KE++QECVSE+ISFIT EA+++C +E+RKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGE-RGSIRGEPPLVKRPPVEFRTLGVA 175
I +D++W+M LGF+DY+EPL +YL YRE EG+ +GS E P+ K V
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASELPVKK---------DVV 131
Query: 176 AFAAPAAAFHHM 187
P ++F M
Sbjct: 132 LNGDPGSSFEGM 143
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 83/100 (83%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
REQDR++PIAN+IRIM+K LP +AK++ DAKET+Q+CVSE+ISFIT EA+++CQ+E+RKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGERGSIR 156
I ED++ AM LGF++Y+EPL VYL +YRE E + R
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNNKR 146
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
REQD ++PIANV RIM+ +P KI+ DAKE +QECVSE+ISFIT EA+ERC +E+RKT
Sbjct: 54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 113
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-MEGERG 153
I ED+L+AMS LGFD Y+EPL YL +YRE M+GE+G
Sbjct: 114 INGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKG 151
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 76/95 (80%)
Query: 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTI 117
++DR +PIANV R+M++ILP +AKIS +AK+T+QEC +E+ISF+T EA+E+C RE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 118 TAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
+D+ WA+S LG D+Y + + +LH+YRE E ER
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERER 97
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 75/95 (78%)
Query: 62 FMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAED 121
+PIANV RIM+ LP++AKIS +AK+ +Q+CVSE+ISF+TGEA+E+C +E+RKTIT ED
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 122 VLWAMSKLGFDDYIEPLTVYLHRYREMEGERGSIR 156
VL A++ LGF++Y E L + L +YRE + S++
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYREQQARSASMK 105
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 76/104 (73%)
Query: 55 TVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQR 114
T+REQDR++PI NV R+M+ LP AK+S DAKE +QECVSE ISF+T EA++RC ++R
Sbjct: 34 TLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKR 93
Query: 115 KTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGERGSIRGE 158
KTI ED+L ++ LGF++Y E L +YL +YR+ + + + E
Sbjct: 94 KTINGEDILISLHALGFENYAEVLKIYLAKYRQQQALKNQLMYE 137
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 46 HTNYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEA 105
H NY + + EQDR++PI NV R+M+ LP K+S DAKE +QECVSE+ISF+T EA
Sbjct: 13 HNNYLNE---LAEQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEA 69
Query: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEG 150
+RC +RKTI ED+L ++ LGF++Y E L +YL +YR+ +
Sbjct: 70 CDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQQQA 114
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%), Gaps = 1/65 (1%)
Query: 90 IQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE-M 148
+QECVSE+ISFIT EA+ERC +E+RKTI ED+L+AMS LGFD Y+EPL +YL ++RE M
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 149 EGERG 153
+GE+G
Sbjct: 61 KGEKG 65
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 58/87 (66%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+P+AN++R+++K+LP AKI AK +C E++ F+ EA+E+ + E R+T+ ED
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 123 LWAMSKLGFDDYIEPLTVYLHRYREME 149
L + LGFD Y++P+ Y+H YRE E
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 61/90 (67%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
+E + +P A V ++++++LPQ K S++ ++ I EC E+I I+ EAN+ C REQ++T
Sbjct: 7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRT 66
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYR 146
I AE V+ A+++LGF DY + ++ +++
Sbjct: 67 IAAEHVIKALTELGFSDYTQKVSDVYDKHK 96
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTI 117
++D +P A + +I++++LP +++ DA++ + EC E+I+ ++ E+N+ C +E ++TI
Sbjct: 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 70
Query: 118 TAEDVLWAMSKLGFDDYIEPLTVYL----HRYREMEGERGSIRGEP 159
E VL A+ LGF +YIE VY H+Y M+ + S++ P
Sbjct: 71 APEHVLKALQVLGFGEYIE--EVYAAYEQHKYETMQDTQRSVKWNP 114
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 8/103 (7%)
Query: 50 EDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERC 109
ED+E T +P A++ +I+++++P +++++++E I C SE+I I+ EANE C
Sbjct: 14 EDDELT-------LPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVC 65
Query: 110 QREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
+KTI AE VL A+ +LGF DY + LH +E+ +R
Sbjct: 66 NMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKR 108
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+P A V +++ ILP + +A++ + EC E+I ++ EANE C++E +KTI AE +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 123 LWAMSKLGFDDYI-EPLTVYL-HRYREMEGERGSIRGEPPLVKRPPV 167
+ A+ L F +YI E L V H+ ++ E+ S + E V R +
Sbjct: 72 IKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGVSRDEL 118
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTI 117
+ D +P A + +++++ LP + ++++DA+E + C +E+I I+ EANE C + ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 118 TAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
+ E V+ A+ LGF YI + L + + +R
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTI 117
+ D +P A + +++++ LP + ++++DA+E + C +E+I I+ EANE C + ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 118 TAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
+ E V+ A+ LGF YI + L + + +R
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTI 117
+ D +P A + +++++ LP + ++++DA+E + C +E+I I+ EANE C + ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 118 TAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
+ E V+ A+ LGF YI + L + + +R
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 58 EQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTI 117
+ D +P A + +++++ LP + ++++DA+E + C +E+I I+ EANE C + ++KTI
Sbjct: 8 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 66
Query: 118 TAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGER 152
+ E V+ A+ LGF YI + L + + +R
Sbjct: 67 SPEHVIQALESLGFGSYISEVKEVLQECKTVALKR 101
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
R +D +P A + RI+++ LP IS +A+ I S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRYR 146
+ A DVL AM ++ F +I PL L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFITPLKEALEAYR 93
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
R +D +P A + RI+++ LP IS +A+ I S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRY-REMEGER 152
+ A DVL AM ++ F ++ PL L Y RE +G++
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
R +D +P A + RI+++ LP IS +A+ I S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRY-REMEGER 152
+ A DVL AM ++ F ++ PL L Y RE +G++
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
R +D +P A + RI+++ LP IS +A+ I S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRY-REMEGER 152
+ A DVL AM ++ F ++ PL L Y RE +G++
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 57 REQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 116
R +D +P A + RI+++ LP IS +A+ I S ++ + T AN + +RKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 117 ITAEDVLWAMSKLGFDDYIEPLTVYLHRY-REMEGER 152
+ A DVL AM ++ F ++ PL L Y RE +G++
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+P A V +++ +IL Q + DA+E I E+I ++ A+E E +KTI E V
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 123 LWAMSKLGFDDYIEPLTVYLHRYR 146
+ A+ +L ++++I L L ++
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFK 93
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 53/98 (54%)
Query: 48 NYEDNECTVREQDRFMPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANE 107
N + ++ T D +P + ++R+++ +LP+ + + +A + + + ++SF+T + E
Sbjct: 2 NQDKSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGE 61
Query: 108 RCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRY 145
RK + +DVL A+ ++ + ++ + L +L Y
Sbjct: 62 IATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAY 99
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+P+A V R++RK + ++S DA E + E + +Y + +A E + RKT+TA+D+
Sbjct: 4 LPMAPVDRLIRKAGAE--RVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDI 61
Query: 123 LWAMS 127
A+S
Sbjct: 62 KLALS 66
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 38.5 bits (88), Expect = 0.038, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+P+A V R++RK +++S+DAK + + + EY I +A E + RKT+ +D+
Sbjct: 8 LPLAPVERLLRK--AGASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 123 LWAMSKL 129
A+ +L
Sbjct: 66 KLALREL 72
>sp|O27731|HMT2_METTH DNA-binding protein HMt-1.2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA2 PE=3 SV=3
Length = 68
Score = 37.7 bits (86), Expect = 0.077, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA V RI++ Q +ISDDA+E + + + E I EA + + RKT+ A D+
Sbjct: 4 LPIAPVGRIIKNAGAQ--RISDDAREALAKILEEKGEEIAKEAVKLAKHAGRKTVKASDI 61
Query: 123 LWAMSKL 129
A KL
Sbjct: 62 ELAAKKL 68
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 37.4 bits (85), Expect = 0.083, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA V RI++ Q +ISDDAKE + + + E I+ +A E + RKT+ A D+
Sbjct: 4 LPIAPVGRIIKNAGAQ--RISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATDI 61
Query: 123 LWAMSKL 129
A +L
Sbjct: 62 EMAAKQL 68
>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio
GN=taf8 PE=1 SV=1
Length = 308
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 88 ETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRE 147
ET+ E + YI+ + A C+ R T T DV+ + ++GF+ ++ L VY R +
Sbjct: 61 ETLTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITLVEMGFN--VDTLPVYAKRSQR 118
Query: 148 MEGERGSIRGEPPLVKRPPV 167
M + PP+ P V
Sbjct: 119 M------VITAPPITNAPVV 132
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 37.0 bits (84), Expect = 0.13, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA + R++RK + ++S+DA + + E + EY + +A E + RKT+ AEDV
Sbjct: 4 LPIAPIDRLIRKAGAE--RVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAEDV 61
Query: 123 LWAM 126
A+
Sbjct: 62 RLAV 65
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC BAA-918
/ JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA V R++RK + ++S+DA + + E + EY ++ +A + + RKT+ AED+
Sbjct: 4 LPIAPVDRLIRKAGAE--RVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDI 61
Query: 123 LWAM 126
A+
Sbjct: 62 KLAI 65
>sp|P48783|HFO2_METFO Archaeal histone A2 OS=Methanobacterium formicicum GN=hfoA2 PE=1
SV=3
Length = 68
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 63 MPIANVIRIMRKILPQHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDV 122
+PIA V RI++ Q +ISDDAKE + + + E + +A E + RKT+ AED+
Sbjct: 4 LPIAPVGRIIKNAGAQ--RISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAEDI 61
Query: 123 LWAM 126
A+
Sbjct: 62 EMAV 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,817,085
Number of Sequences: 539616
Number of extensions: 3880738
Number of successful extensions: 33523
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 33406
Number of HSP's gapped (non-prelim): 140
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)